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{
"packages": [
{
"name": "assertr",
"description": "Assertive Programming for R Analysis Pipelines",
"details": "Provides functionality to assert conditions that have to be met so that errors in data used in analysis pipelines can fail quickly. Similar to 'stopifnot()' but more powerful, friendly, and easier for use in pipelines.",
"maintainer": "Tony Fischetti",
"keywords": "analysis-pipeline, assertion-library, assertion-methods, assertions, peer-reviewed, predicate-functions",
"github": "https://github.com/ropensci/assertr",
"status": "https://www.repostatus.org#active",
"onboarding": "https://github.com/ropensci/software-review/issues/23",
"on_cran": true,
"on_bioc": false,
"type": "active",
"url": "https://github.com/ropensci/assertr",
"ropensci_category": "scalereprod",
"ropenscilabs": false,
"date_last_commit": "2024-04-11 23:36:15",
"cran_archived": false,
"staff_maintained": false
},
{
"name": "auk",
"description": "eBird Data Extraction and Processing in R",
"details": "Extract and process bird sightings records from eBird (<http://ebird.org>), an online tool for recording bird observations. Public access to the full eBird database is via the eBird Basic Dataset (EBD; see <http://ebird.org/ebird/data/download> for access), a downloadable text file. This package is an interface to AWK for extracting data from the EBD based on taxonomic, spatial, or temporal filters, to produce a manageable file size that can be imported into R.",
"maintainer": "Matthew Strimas-Mackey",
"keywords": "dataset, ebird",
"github": "https://github.com/CornellLabofOrnithology/auk",
"status": "https://www.repostatus.org#active",
"onboarding": "https://github.com/ropensci/software-review/issues/136",
"on_cran": true,
"on_bioc": false,
"type": "active",
"url": "https://github.com/CornellLabofOrnithology/auk",
"ropensci_category": "data-access",
"ropenscilabs": false,
"date_last_commit": "2025-01-03 15:00:42",
"cran_archived": false,
"staff_maintained": false
},
{
"name": "autotest",
"description": "Automatic Package Testing",
"details": "Automatic testing of R packages via a simple YAML schema.",
"maintainer": "Mark Padgham",
"keywords": "",
"github": "https://github.com/ropensci-review-tools/autotest",
"status": "https://www.repostatus.org#concept",
"onboarding": "",
"on_cran": false,
"on_bioc": false,
"type": "experimental",
"url": "https://github.com/ropensci-review-tools/autotest",
"ropensci_category": "scalereprod",
"ropenscilabs": false,
"date_last_commit": "2024-10-23 12:25:13",
"cran_archived": false,
"staff_maintained": true
},
{
"name": "babeldown",
"description": "Helpers for Automatic Translation of Markdown-based Content",
"details": "Provide workflows and guidance for automatic translation of Markdown-based R content using DeepL API.",
"maintainer": "Maëlle Salmon",
"keywords": "",
"github": "https://github.com/ropensci-review-tools/babeldown",
"status": "https://www.repostatus.org#active",
"onboarding": "",
"on_cran": false,
"on_bioc": false,
"type": "active",
"url": "https://github.com/ropensci-review-tools/babeldown",
"ropensci_category": "scalereprod",
"ropenscilabs": false,
"date_last_commit": "2025-02-20 16:18:26",
"cran_archived": false,
"staff_maintained": true
},
{
"name": "babelquarto",
"description": "Renders a Multilingual Quarto Book",
"details": "Automate rendering and cross-linking of Quarto books following a prescribed structure.",
"maintainer": "Maëlle Salmon",
"keywords": "",
"github": "https://github.com/ropensci-review-tools/babelquarto",
"status": "https://www.repostatus.org#active",
"onboarding": "",
"on_cran": false,
"on_bioc": false,
"type": "active",
"url": "https://github.com/ropensci-review-tools/babelquarto",
"ropensci_category": "scalereprod",
"ropenscilabs": false,
"date_last_commit": "2025-02-07 09:32:16",
"cran_archived": false,
"staff_maintained": true
},
{
"name": "commonmark",
"description": "High Performance CommonMark and Github Markdown Rendering in R",
"details": "The CommonMark specification <https://github.github.com/gfm/> defines a rationalized version of markdown syntax. This package uses the 'cmark' reference implementation for converting markdown text into various formats including html, latex and groff man. In addition it exposes the markdown parse tree in xml format. Also includes opt-in support for GFM extensions including tables, autolinks, and strikethrough text.",
"maintainer": "Jeroen Ooms",
"keywords": "cmark, cmark-gfm, gfm, markdown",
"github": "https://github.com/r-lib/commonmark",
"status": "https://www.repostatus.org#active",
"onboarding": "",
"on_cran": true,
"on_bioc": false,
"type": "active",
"url": "https://github.com/r-lib/commonmark",
"ropensci_category": "data-extraction",
"ropenscilabs": false,
"date_last_commit": "2024-10-12 17:50:40",
"cran_archived": false,
"staff_maintained": true
},
{
"name": "commonmetar",
"description": "Wraps Commonmeta For rOpenSci Blog's Needs",
"details": "Uses the commonmeta Go library to generate random DOI strings.",
"maintainer": "Maëlle Salmon",
"keywords": "",
"github": "https://github.com/maelle/commonmetar",
"status": "https://www.repostatus.org#active",
"onboarding": "",
"on_cran": false,
"on_bioc": false,
"type": "active",
"url": "https://github.com/maelle/commonmetar",
"date_last_commit": "2025-02-19 06:41:03",
"cran_archived": false,
"staff_maintained": false
},
{
"name": "credentials",
"description": "Tools for Managing SSH and Git Credentials",
"details": "Setup and retrieve HTTPS and SSH credentials for use with 'git' and other services. For HTTPS remotes the package interfaces the 'git-credential' utility which 'git' uses to store HTTP usernames and passwords. For SSH remotes we provide convenient functions to find or generate appropriate SSH keys. The package both helps the user to setup a local git installation, and also provides a back-end for git/ssh client libraries to authenticate with existing user credentials.",
"maintainer": "Jeroen Ooms",
"keywords": "git, password, ssh",
"github": "https://github.com/r-lib/credentials",
"status": "https://www.repostatus.org#active",
"onboarding": "",
"on_cran": true,
"on_bioc": false,
"type": "active",
"url": "https://github.com/r-lib/credentials",
"ropensci_category": "scalereprod",
"ropenscilabs": false,
"date_last_commit": "2024-10-03 18:19:01",
"cran_archived": false,
"staff_maintained": true
},
{
"name": "emodnet.wfs",
"description": "Access 'EMODnet' Web Feature Service data through R",
"details": "Access and interrogate 'EMODnet' (European Marine Observation and Data Network) Web Feature Service data through R.",
"maintainer": "Salvador Fernández-Bejarano",
"keywords": "biology, dataproducts, emodnet, marine-data, wfs",
"github": "https://github.com/EMODnet/emodnet.wfs",
"status": "https://www.repostatus.org#active",
"onboarding": "https://github.com/ropensci/software-review/issues/653",
"on_cran": false,
"on_bioc": false,
"type": "active",
"url": "https://github.com/EMODnet/emodnet.wfs",
"date_last_commit": "2025-02-04 11:03:34",
"cran_archived": false,
"staff_maintained": false
},
{
"name": "frictionless",
"description": "Read and Write Frictionless Data Packages",
"details": "Read and write Frictionless Data Packages. A 'Data Package' (<https://specs.frictionlessdata.io/data-package/>) is a simple container format and standard to describe and package a collection of (tabular) data. It is typically used to publish FAIR (<https://www.go-fair.org/fair-principles/>) and open datasets.",
"maintainer": "Peter Desmet",
"keywords": "frictionlessdata, oscibio",
"github": "https://github.com/frictionlessdata/frictionless-r",
"status": "https://www.repostatus.org#active",
"onboarding": "https://github.com/ropensci/software-review/issues/495",
"on_cran": true,
"on_bioc": false,
"type": "active",
"url": "https://github.com/frictionlessdata/frictionless-r",
"ropensci_category": "data-publication",
"ropenscilabs": false,
"date_last_commit": "2024-09-26 15:18:17",
"cran_archived": false,
"staff_maintained": false
},
{
"name": "gert",
"description": "Simple Git Client for R",
"details": "Simple git client for R based on 'libgit2' <https://libgit2.org> with support for SSH and HTTPS remotes. All functions in 'gert' use basic R data types (such as vectors and data-frames) for their arguments and return values. User credentials are shared with command line 'git' through the git-credential store and ssh keys stored on disk or ssh-agent.",
"maintainer": "Jeroen Ooms",
"keywords": "libgit2",
"github": "https://github.com/r-lib/gert",
"status": "https://www.repostatus.org#active",
"onboarding": "",
"on_cran": true,
"on_bioc": false,
"type": "active",
"url": "https://github.com/r-lib/gert",
"ropensci_category": "scalereprod",
"ropenscilabs": false,
"date_last_commit": "2024-11-02 08:55:26",
"cran_archived": false,
"staff_maintained": true
},
{
"name": "gitcellar",
"description": "Helps Download Archives of GitHub Repositories",
"details": "Provide functionality to download archives (backups) for all repositories in a GitHub organization (useful for backups!).",
"maintainer": "Maëlle Salmon",
"keywords": "github, github-backup, github-backups",
"github": "https://github.com/ropensci-org/gitcellar",
"status": "https://www.repostatus.org#active",
"onboarding": "",
"on_cran": false,
"on_bioc": false,
"type": "active",
"url": "https://github.com/ropensci-org/gitcellar",
"ropensci_category": "scalereprod",
"ropenscilabs": false,
"date_last_commit": "2025-02-14 05:53:51",
"cran_archived": false,
"staff_maintained": true
},
{
"name": "goodpractice",
"description": "Advice on R Package Building",
"details": "Give advice about good practices when building R packages. Advice includes functions and syntax to avoid, package structure, code complexity, code formatting, etc.",
"maintainer": "Mark Padgham",
"keywords": "",
"github": "https://github.com/ropensci-review-tools/goodpractice",
"status": "https://www.repostatus.org#active",
"onboarding": "",
"on_cran": true,
"on_bioc": false,
"type": "active",
"url": "https://github.com/ropensci-review-tools/goodpractice",
"ropensci_category": "scalereprod",
"ropenscilabs": false,
"date_last_commit": "2024-11-18 14:45:16",
"cran_archived": false,
"staff_maintained": true
},
{
"name": "pkgcheck",
"description": "rOpenSci Package Checks",
"details": "Check whether a package is ready for submission to rOpenSci's peer review system.",
"maintainer": "Mark Padgham",
"keywords": "",
"github": "https://github.com/ropensci-review-tools/pkgcheck",
"status": "https://www.repostatus.org#concept",
"onboarding": "",
"on_cran": false,
"on_bioc": false,
"type": "experimental",
"url": "https://github.com/ropensci-review-tools/pkgcheck",
"ropensci_category": "scalereprod",
"ropenscilabs": false,
"date_last_commit": "2025-02-17 15:04:34",
"cran_archived": false,
"staff_maintained": true
},
{
"name": "pkgmatch",
"description": "Find R Packages Matching Either Descriptions or Other R Packages",
"details": "Find R packages matching either descriptions or other R packages.",
"maintainer": "Mark Padgham",
"keywords": "cpp",
"github": "https://github.com/ropensci-review-tools/pkgmatch",
"status": "https://www.repostatus.org#active",
"onboarding": "",
"on_cran": false,
"on_bioc": false,
"type": "active",
"url": "https://github.com/ropensci-review-tools/pkgmatch",
"ropensci_category": "scalereprod",
"ropenscilabs": false,
"date_last_commit": "2025-02-13 12:53:03",
"cran_archived": false,
"staff_maintained": true
},
{
"name": "pkgreviewr",
"description": "rOpenSci package review project template",
"details": "Creates files and collects materials necessary to complete an rOpenSci package review. Review files are prepopulated with review package specific metadata. Review package source code is also cloned for local testing and inspection.",
"maintainer": "Maëlle Salmon",
"keywords": "review, ropensci, ropensci-reviews, unconf, unconf18",
"github": "https://github.com/ropensci-org/pkgreviewr",
"status": "https://www.repostatus.org#active",
"onboarding": "",
"on_cran": false,
"on_bioc": false,
"type": "active",
"url": "https://github.com/ropensci-org/pkgreviewr",
"ropensci_category": "scalereprod",
"ropenscilabs": false,
"date_last_commit": "2025-02-18 17:17:25",
"cran_archived": false,
"staff_maintained": false
},
{
"name": "pkgstats",
"description": "Metrics of R Packages",
"details": "Static code analyses for R packages using the external code-tagging libraries 'ctags' and 'gtags'. Static analyses enable packages to be analysed very quickly, generally a couple of seconds at most. The package also provides access to a database generating by applying the main function to the full 'CRAN' archive, enabling the statistical properties of any package to be compared with all other 'CRAN' packages.",
"maintainer": "Mark Padgham",
"keywords": "code-analysis, code-statistics, cpp, software-analysis",
"github": "https://github.com/ropensci-review-tools/pkgstats",
"status": "https://www.repostatus.org#active",
"onboarding": "",
"on_cran": false,
"on_bioc": false,
"type": "active",
"url": "https://github.com/ropensci-review-tools/pkgstats",
"ropensci_category": "scalereprod",
"ropenscilabs": false,
"date_last_commit": "2025-02-26 13:30:00",
"cran_archived": true,
"staff_maintained": true
},
{
"name": "repometrics",
"description": "Metrics for Your Code Repository",
"details": "Metrics for your code repository. Call one function to generate an interactive dashboard displaying the state of your code.",
"maintainer": "Mark Padgham",
"keywords": "dashboard, software-metrics",
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"name": "roblog",
"description": "rOpenSci's blog guidance",
"details": "It provides templates for roweb2 blogging and help for a GitHub forking workflow.",
"maintainer": "Maëlle Salmon",
"keywords": "",
"github": "https://github.com/ropenscilabs/roblog",
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"name": "roreviewapi",
"description": "Plumber API to report package structure and function",
"details": "Plumber API to report package structure and function.",
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"name": "rotemplate",
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"name": "rsi",
"description": "Efficiently Retrieve and Process Satellite Imagery",
"details": "Downloads spatial data from spatiotemporal asset catalogs ('STAC'), computes standard spectral indices from the Awesome Spectral Indices project (Montero et al. (2023) <doi:10.1038/s41597-023-02096-0>) against raster data, and glues the outputs together into predictor bricks. Methods focus on interoperability with the broader spatial ecosystem; function arguments and outputs use classes from 'sf' and 'terra', and data downloading functions support complex 'CQL2' queries using 'rstac'.",
"maintainer": "Michael Mahoney",
"keywords": "",
"github": "https://github.com/Permian-Global-Research/rsi",
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"name": "sodium",
"description": "A Modern and Easy-to-Use Crypto Library",
"details": "Bindings to 'libsodium' <https://doc.libsodium.org/>: a modern, easy-to-use software library for encryption, decryption, signatures, password hashing and more. Sodium uses curve25519, a state-of-the-art Diffie-Hellman function by Daniel Bernstein, which has become very popular after it was discovered that the NSA had backdoored Dual EC DRBG.",
"maintainer": "Jeroen Ooms",
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"name": "srr",
"description": "'rOpenSci' Review Roclets",
"details": "Companion package to 'rOpenSci' statistical software review project.",
"maintainer": "Mark Padgham",
"keywords": "compliance-automation, cpp, statistical-software",
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"name": "treeio",
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"details": "'treeio' is an R package to make it easier to import and store phylogenetic tree with associated data; and to link external data from different sources to phylogeny. It also supports exporting phylogenetic tree with heterogeneous associated data to a single tree file and can be served as a platform for merging tree with associated data and converting file formats.",
"maintainer": "Guangchuang Yu",
"keywords": "alignment, annotation, clustering, dataimport, datarepresentation, exporter, multiplesequencealignment, parser, phylogenetic-trees, phylogenetics, software",
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"name": "wmm",
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"details": "Calculate magnetic field at a given location and time according to the World Magnetic Model (WMM). Both the main field and secular variation components are returned. This functionality is useful for physicists and geophysicists who need orthogonal components from WMM. Currently, this package supports annualized time inputs between 2000 and 2025. If desired, users can specify which WMM version to use, e.g., the original WMM2015 release or the recent out-of-cycle WMM2015 release. Methods used to implement WMM, including the Gauss coefficients for each release, are described in the following publications: Chulliat et al (2020) <doi:10.25923/ytk1-yx35>, Chulliat et al (2019) <doi:10.25921/xhr3-0t19>, Chulliat et al (2015) <doi:10.7289/V5TB14V7>, Maus et al (2010) <https://www.ngdc.noaa.gov/geomag/WMM/data/WMMReports/WMM2010_Report.pdf>, McLean et al (2004) <https://www.ngdc.noaa.gov/geomag/WMM/data/WMMReports/TRWMM_2005.pdf>, and Macmillian et al (2000) <https://www.ngdc.noaa.gov/geomag/WMM/data/WMMReports/wmm2000.pdf>.",
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"name": "agroclimatico",
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"name": "allcontributors",
"description": "Acknowledge all Contributors to a Project",
"details": "Acknowledge all contributors to a project via a single function call. The function appends to a 'README' or other specified file(s) a table with names of all individuals who contributed via code or repository issues. The package also includes several additional functions to extract and quantify contributions to any repository.",
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"name": "allodb",
"description": "Tree Biomass Estimation at Extra-Tropical Forest Plots",
"details": "Standardize and simplify the tree biomass estimation process across globally distributed extratropical forests.",
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"keywords": "",
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{
"name": "antanym",
"description": "Antarctic Geographic Place Names",
"details": "Antarctic geographic names from the Composite Gazetteer of Antarctica, and functions for working with those place names.",
"maintainer": "Ben Raymond",
"keywords": "antarctic, gazetteer, peer-reviewed, place names, southern ocean",
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"name": "antiword",
"description": "Extract Text from Microsoft Word Documents",
"details": "Wraps the 'AntiWord' utility to extract text from Microsoft Word documents. The utility only supports the old 'doc' format, not the new xml based 'docx' format. Use the 'xml2' package to read the latter.",
"maintainer": "Jeroen Ooms",
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"name": "aorsf",
"description": "Accelerated Oblique Random Forests",
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"name": "arkdb",
"description": "Archive and Unarchive Databases Using Flat Files",
"details": "Flat text files provide a robust, compressible, and portable way to store tables from databases. This package provides convenient functions for exporting tables from relational database connections into compressed text files and streaming those text files back into a database without requiring the whole table to fit in working memory.",
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"name": "aRxiv",
"description": "Interface to the arXiv API",
"details": "An interface to the API for 'arXiv', a repository of electronic preprints for computer science, mathematics, physics, quantitative biology, quantitative finance, and statistics.",
"maintainer": "Karl Broman",
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"description": "Working with Audio and Video in R",
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"name": "awardFindR",
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"description": "Control 'BEAST2'",
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"description": "Label Creation for Tracking and Collecting Data from\n Biological Samples",
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"description": "Working with Sets the Tidy Way",
"details": "Implements a class and methods to work with sets, doing intersection, union, complementary sets, power sets, cartesian product and other set operations in a \"tidy\" way. These set operations are available for both classical sets and fuzzy sets. Import sets from several formats or from other several data structures.",
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"name": "beastier",
"description": "Call 'BEAST2'",
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"name": "beautier",
"description": "'BEAUti' from R",
"details": "'BEAST2' (<https://www.beast2.org>) is a widely used Bayesian phylogenetic tool, that uses DNA/RNA/protein data and many model priors to create a posterior of jointly estimated phylogenies and parameters. 'BEAUti 2' (which is part of 'BEAST2') is a GUI tool that allows users to specify the many possible setups and generates the XML file 'BEAST2' needs to run. This package provides a way to create 'BEAST2' input files without active user input, but using R function calls instead.",
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"type": "active",
"url": "https://github.com/ropensci/beautier",
"ropensci_category": "scalereprod",
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"date_last_commit": "2025-02-22 10:11:11",
"github_archived": false,
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},
{
"name": "bib2df",
"description": "Parse a BibTeX File to a Data Frame",
"details": "Parse a BibTeX file to a data.frame to make it accessible for further analysis and visualization.",
"maintainer": "Gianluca Baio",
"keywords": "bibtex, peer-reviewed",
"github": "https://github.com/ropensci/bib2df",
"status": "https://www.repostatus.org#active",
"onboarding": "https://github.com/ropensci/software-review/issues/124",
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"type": "active",
"url": "https://github.com/ropensci/bib2df",
"ropensci_category": "data-extraction",
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"date_last_commit": "2024-08-09 13:01:14",
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{
"name": "bibtex",
"description": "Bibtex Parser",
"details": "Utility to parse a bibtex file. ",
"maintainer": "James Joseph Balamuta",
"keywords": "bibtex, parser",
"github": "https://github.com/ropensci/bibtex",
"status": "https://www.repostatus.org#active",
"onboarding": "",
"on_cran": true,
"on_bioc": false,
"type": "active",
"url": "https://github.com/ropensci/bibtex",
"ropensci_category": "literature",
"ropenscilabs": false,
"date_last_commit": "2023-11-22 06:09:38",
"github_archived": false,
"cran_archived": false,
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},
{
"name": "bikedata",
"description": "Download and Aggregate Data from Public Hire Bicycle Systems",
"details": "Download and aggregate data from all public hire bicycle systems which provide open data, currently including 'Santander' Cycles in London, U.K.; from the U.S.A., 'Ford GoBike' in San Francisco CA, 'citibike' in New York City NY, 'Divvy' in Chicago IL, 'Capital Bikeshare' in Washington DC, 'Hubway' in Boston MA, 'Metro' in Los Angeles LA, 'Indego' in Philadelphia PA, and 'Nice Ride' in Minnesota; 'Bixi' from Montreal, Canada; and 'mibici' from Guadalajara, Mexico.",
"maintainer": "Mark Padgham",
"keywords": "bicycle-hire, bicycle-hire-systems, bike-data, bike-hire, bike-hire-systems, cpp, database, peer-reviewed",
"github": "https://github.com/ropensci/bikedata",
"status": "https://www.repostatus.org/",
"onboarding": "https://github.com/ropensci/software-review/issues/116",
"on_cran": false,
"on_bioc": false,
"type": "active",
"url": "https://github.com/ropensci/bikedata",
"ropensci_category": "data-access",
"ropenscilabs": false,
"date_last_commit": "2024-02-06 11:25:54",
"github_archived": false,
"cran_archived": true,
"staff_maintained": false
},
{
"name": "binman",
"description": "A Binary Download Manager",
"details": "Tools and functions for managing the download of binary files. Binary repositories are defined in 'YAML' format. Defining new pre-download, download and post-download templates allow additional repositories to be added.",
"maintainer": "Jonathan Völkle",
"keywords": "",
"github": "https://github.com/ropensci/binman",
"status": "https://www.repostatus.org#active",
"onboarding": "",
"on_cran": true,
"on_bioc": false,
"type": "active",
"url": "https://github.com/ropensci/binman",
"ropensci_category": "http-tools",
"ropenscilabs": false,
"date_last_commit": "2023-07-25 09:12:52",
"github_archived": false,
"cran_archived": false,
"staff_maintained": false
},
{
"name": "biomartr",
"description": "Genomic Data Retrieval",
"details": "Perform large scale genomic data retrieval and functional annotation retrieval. This package aims to provide users with a standardized way to automate genome, proteome, 'RNA', coding sequence ('CDS'), 'GFF', and metagenome retrieval from 'NCBI RefSeq', 'NCBI Genbank', 'ENSEMBL', and 'UniProt' databases. Furthermore, an interface to the 'BioMart' database (Smedley et al. (2009) <doi:10.1186/1471-2164-10-22>) allows users to retrieve functional annotation for genomic loci. In addition, users can download entire databases such as 'NCBI RefSeq' (Pruitt et al. (2007) <doi:10.1093/nar/gkl842>), 'NCBI nr', 'NCBI nt', 'NCBI Genbank' (Benson et al. (2013) <doi:10.1093/nar/gks1195>), etc. with only one command.",
"maintainer": "Hajk-Georg Drost",
"keywords": "annotation-retrieval, biological-data-retrieval, biomart, database-retrieval, ensembl, ensembl-servers, genome, genome-annotation, genome-retrieval, genomic-data-retrieval, genomics, meta-analysis, metagenomics, ncbi, ncbi-genbank, peer-reviewed, proteome, sequenced-genomes",
"github": "https://github.com/ropensci/biomartr",
"status": "https://www.repostatus.org#active",
"onboarding": "https://github.com/ropensci/software-review/issues/93",
"on_cran": true,
"on_bioc": false,
"type": "active",
"url": "https://github.com/ropensci/biomartr",
"ropensci_category": "data-access",
"ropenscilabs": false,
"date_last_commit": "2025-02-03 18:15:24",
"github_archived": false,
"cran_archived": false,
"staff_maintained": false
},
{
"name": "birdsize",
"description": "Estimate Avian Body Size Distributions",
"details": "Generate estimated body size distributions for populations or communities of birds, given either species ID or species' mean body size. Designed to work naturally with the North American Breeding Bird Survey, or with any dataset of bird species, abundance, and/or mean size data.",
"maintainer": "Renata Diaz",
"keywords": "",
"github": "https://github.com/ropensci/birdsize",
"status": "https://www.repostatus.org#wip",
"onboarding": "https://github.com/ropensci/software-review/issues/577",
"on_cran": false,
"on_bioc": false,
"type": "experimental",
"url": "https://github.com/ropensci/birdsize",
"ropensci_category": "scalereprod",
"ropenscilabs": false,
"date_last_commit": "2023-12-08 19:24:29",
"github_archived": false,
"cran_archived": false,
"staff_maintained": false
},
{
"name": "bold",
"description": "Interface to Bold Systems API",
"details": "A programmatic interface to the Web Service methods provided by Bold Systems (<http://www.boldsystems.org/>) for genetic 'barcode' data. Functions include methods for searching by sequences by taxonomic names, ids, collectors, and institutions; as well as a function for searching for specimens, and downloading trace files.",
"maintainer": "Salix Dubois",
"keywords": "api-wrapper, barcode, barcodes, biodiversity, dna, fasta, sequences, taxize",
"github": "https://github.com/ropensci/bold",
"status": "https://www.repostatus.org#active",
"onboarding": "",
"on_cran": false,
"on_bioc": false,
"type": "active",
"url": "https://github.com/ropensci/bold",
"ropensci_category": "data-access",
"ropenscilabs": false,
"date_last_commit": "2024-12-13 22:53:13",
"github_archived": false,
"cran_archived": true,
"staff_maintained": false
},
{
"name": "bowerbird",
"description": "Keep a Collection of Sparkly Data Resources",
"details": "Tools to get and maintain a data repository from third-party data providers.",
"maintainer": "Ben Raymond",
"keywords": "antarctic, climate, data, environmental, peer-reviewed, ropensci, satellite, southern ocean",
"github": "https://github.com/ropensci/bowerbird",
"status": "https://www.repostatus.org#active",
"onboarding": "https://github.com/ropensci/software-review/issues/139",
"on_cran": false,
"on_bioc": false,
"type": "active",
"url": "https://github.com/ropensci/bowerbird",
"ropensci_category": "scalereprod",
"ropenscilabs": false,
"date_last_commit": "2025-01-07 00:32:17",
"github_archived": false,
"cran_archived": false,
"staff_maintained": false
},
{
"name": "brranching",
"description": "Fetch 'Phylogenies' from Many Sources",
"details": "Includes methods for fetching 'phylogenies' from a variety of sources, including the 'Phylomatic' web service (<http://phylodiversity.net/phylomatic/>), and 'Phylocom' (<https://github.com/phylocom/phylocom/>).",
"maintainer": "Luna L Sanchez Reyes",
"keywords": "molecular, phylogenies, phylogeny, phylomatic, plants, tree",
"github": "https://github.com/ropensci/brranching",
"status": "https://www.repostatus.org#active",
"onboarding": "",
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"on_bioc": false,
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"url": "https://github.com/ropensci/brranching",
"ropensci_category": "data-access",
"ropenscilabs": false,
"date_last_commit": "2022-12-05 08:37:57",
"github_archived": false,
"cran_archived": true,
"staff_maintained": false
},
{
"name": "c14bazAAR",
"description": "Download and Prepare C14 Dates from Different Source Databases",
"details": "Query different C14 date databases and apply basic data cleaning, merging and calibration steps. Currently available databases: 14cpalaeolithic, 14sea, adrac, agrichange, aida, austarch, bda, calpal, caribbean, eubar, euroevol, irdd, jomon, katsianis, kiteeastafrica, medafricarbon, mesorad, neonet, neonetatl, nerd, p3k14c, pacea, palmisano, rado.nb, rxpand, sard, xronos.",
"maintainer": "Clemens Schmid",
"keywords": "archaeology, radiocarbon-dates",
"github": "https://github.com/ropensci/c14bazAAR",
"status": "https://www.repostatus.org#active",
"onboarding": "",
"on_cran": false,
"on_bioc": false,