diff --git a/environment.yml b/environment.yml index 1f49368..d772ac7 100644 --- a/environment.yml +++ b/environment.yml @@ -12,6 +12,7 @@ dependencies: - jupyterlab-myst - jupyter-book - notebook + - postgresql - cellpose - coin-or-cbc - gurobi diff --git a/tutorial/color_tracking.md b/tutorial/color_tracking.md index e4bc54e..809e41a 100644 --- a/tutorial/color_tracking.md +++ b/tutorial/color_tracking.md @@ -59,7 +59,6 @@ def screenshot() -> None: We will load the data and display in the viewer as an RGB image. ```{code-cell} ipython3 - image = imread("multi-color-cytoplasm.tif") print("Image array shape", image.shape) @@ -71,4 +70,4 @@ screenshot() The image stack have 3 channels, since we don't have multi-color segmentation model (or at least I don't), we could process each channel individually and then combine them using Ultrack's to obtain a final segmentation and tracking without complicated heuristics for multi-color tracking. ``` -## Your turn! \ No newline at end of file +## Your turn!