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0README
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0README
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#### Sources of 1kGP gene annotation files ####
# To download these files, please type 'source 0README' from this directory
if [ ! -d "genes_gff" ] ; then
mkdir genes_gff
fi
cd genes_gff
echo "Downloading the gff3 annotation files"
wget ftp://ftp.ensembl.org/pub/release-90/gff3/homo_sapiens/Homo_sapiens.GRCh38.90.chromosome.1.gff3.gz
gzip -d Homo_sapiens.GRCh38.90.chromosome.1.gff3.gz
wget ftp://ftp.ensembl.org/pub/release-90/gff3/homo_sapiens/Homo_sapiens.GRCh38.90.chromosome.2.gff3.gz
gzip -d Homo_sapiens.GRCh38.90.chromosome.2.gff3.gz
wget ftp://ftp.ensembl.org/pub/release-90/gff3/homo_sapiens/Homo_sapiens.GRCh38.90.chromosome.3.gff3.gz
gzip -d Homo_sapiens.GRCh38.90.chromosome.3.gff3.gz
wget ftp://ftp.ensembl.org/pub/release-90/gff3/homo_sapiens/Homo_sapiens.GRCh38.90.chromosome.4.gff3.gz
gzip -d Homo_sapiens.GRCh38.90.chromosome.4.gff3.gz
wget ftp://ftp.ensembl.org/pub/release-90/gff3/homo_sapiens/Homo_sapiens.GRCh38.90.chromosome.5.gff3.gz
gzip -d Homo_sapiens.GRCh38.90.chromosome.5.gff3.gz
wget ftp://ftp.ensembl.org/pub/release-90/gff3/homo_sapiens/Homo_sapiens.GRCh38.90.chromosome.6.gff3.gz
gzip -d Homo_sapiens.GRCh38.90.chromosome.6.gff3.gz
wget ftp://ftp.ensembl.org/pub/release-90/gff3/homo_sapiens/Homo_sapiens.GRCh38.90.chromosome.7.gff3.gz
gzip -d Homo_sapiens.GRCh38.90.chromosome.7.gff3.gz
wget ftp://ftp.ensembl.org/pub/release-90/gff3/homo_sapiens/Homo_sapiens.GRCh38.90.chromosome.8.gff3.gz
gzip -d Homo_sapiens.GRCh38.90.chromosome.8.gff3.gz
wget ftp://ftp.ensembl.org/pub/release-90/gff3/homo_sapiens/Homo_sapiens.GRCh38.90.chromosome.9.gff3.gz
gzip -d Homo_sapiens.GRCh38.90.chromosome.9.gff3.gz
wget ftp://ftp.ensembl.org/pub/release-90/gff3/homo_sapiens/Homo_sapiens.GRCh38.90.chromosome.10.gff3.gz
gzip -d Homo_sapiens.GRCh38.90.chromosome.10.gff3.gz
wget ftp://ftp.ensembl.org/pub/release-90/gff3/homo_sapiens/Homo_sapiens.GRCh38.90.chromosome.11.gff3.gz
gzip -d Homo_sapiens.GRCh38.90.chromosome.11.gff3.gz
wget ftp://ftp.ensembl.org/pub/release-90/gff3/homo_sapiens/Homo_sapiens.GRCh38.90.chromosome.12.gff3.gz
gzip -d Homo_sapiens.GRCh38.90.chromosome.12.gff3.gz
wget ftp://ftp.ensembl.org/pub/release-90/gff3/homo_sapiens/Homo_sapiens.GRCh38.90.chromosome.13.gff3.gz
gzip -d Homo_sapiens.GRCh38.90.chromosome.13.gff3.gz
wget ftp://ftp.ensembl.org/pub/release-90/gff3/homo_sapiens/Homo_sapiens.GRCh38.90.chromosome.14.gff3.gz
gzip -d Homo_sapiens.GRCh38.90.chromosome.14.gff3.gz
wget ftp://ftp.ensembl.org/pub/release-90/gff3/homo_sapiens/Homo_sapiens.GRCh38.90.chromosome.15.gff3.gz
gzip -d Homo_sapiens.GRCh38.90.chromosome.15.gff3.gz
wget ftp://ftp.ensembl.org/pub/release-90/gff3/homo_sapiens/Homo_sapiens.GRCh38.90.chromosome.16.gff3.gz
gzip -d Homo_sapiens.GRCh38.90.chromosome.16.gff3.gz
wget ftp://ftp.ensembl.org/pub/release-90/gff3/homo_sapiens/Homo_sapiens.GRCh38.90.chromosome.17.gff3.gz
gzip -d Homo_sapiens.GRCh38.90.chromosome.17.gff3.gz
wget ftp://ftp.ensembl.org/pub/release-90/gff3/homo_sapiens/Homo_sapiens.GRCh38.90.chromosome.18.gff3.gz
gzip -d Homo_sapiens.GRCh38.90.chromosome.18.gff3.gz
wget ftp://ftp.ensembl.org/pub/release-90/gff3/homo_sapiens/Homo_sapiens.GRCh38.90.chromosome.19.gff3.gz
gzip -d Homo_sapiens.GRCh38.90.chromosome.19.gff3.gz
wget ftp://ftp.ensembl.org/pub/release-90/gff3/homo_sapiens/Homo_sapiens.GRCh38.90.chromosome.20.gff3.gz
gzip -d Homo_sapiens.GRCh38.90.chromosome.20.gff3.gz
wget ftp://ftp.ensembl.org/pub/release-90/gff3/homo_sapiens/Homo_sapiens.GRCh38.90.chromosome.21.gff3.gz
gzip -d Homo_sapiens.GRCh38.90.chromosome.21.gff3.gz
wget ftp://ftp.ensembl.org/pub/release-90/gff3/homo_sapiens/Homo_sapiens.GRCh38.90.chromosome.22.gff3.gz
gzip -d Homo_sapiens.GRCh38.90.chromosome.22.gff3.gz
## continue for all chromosomes
cd ..
echo "Download complete."