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I copy pasted here the bulk data pathway activity tutorial plot. Here we see increase in MAPK pathway in condition 1 compared to condition 2 . Does it mean that this pathways really upregulated (activator genes high) in condition 1 or does it shows genes in this pathway(both supressor and activators) upregulated in condition 1 ?
Also should i use only significantly changed genes in DEGs , or can i use all of the DEGs ?
Thank you;
The text was updated successfully, but these errors were encountered:
I copy pasted here the bulk data pathway activity tutorial plot. Here we see increase in MAPK pathway in condition 1 compared to condition 2 . Does it mean that this pathways really upregulated (activator genes high) in condition 1 or does it shows genes in this pathway(both supressor and activators) upregulated in condition 1 ?
Also should i use only significantly changed genes in DEGs , or can i use all of the DEGs ?
Thank you;
The text was updated successfully, but these errors were encountered: