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* Fix newer clang warning of unused variable. * Improvements for intel -m32 builds. * Check pthread_once() return value and print diagnostic * Add error checking to hist8() and hist1_4() * Print FAIL for xyz_compress() failures * Detect Neon capability at runtime via operating system APIs * Improve checks for pthread calls on FreeBSD * Update hts_pack to operate in line with the spec. * Switch MacOS CI tests to an ARM-based image * Remove overly aggressive buffer overflow checking in rans O1 decoder * Add arth+bzip2 (EXT flag) test file * Remove defunct libz from autoconf and make lack of bz2 fail * Add arith+bzip2 support to name tokeniser
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Submodule htscodecs
updated
28 files
+4 −3 | .cirrus.yml | |
+43 −0 | NEWS.md | |
+22 −8 | configure.ac | |
+3 −2 | htscodecs/Makefile.am | |
+2 −2 | htscodecs/arith_dynamic.c | |
+2 −2 | htscodecs/htscodecs.h | |
+7 −11 | htscodecs/pack.c | |
+10 −3 | htscodecs/rANS_static.c | |
+3 −2 | htscodecs/rANS_static16_int.h | |
+2 −3 | htscodecs/rANS_static32x16pr.c | |
+5 −4 | htscodecs/rANS_static32x16pr_avx2.c | |
+5 −4 | htscodecs/rANS_static32x16pr_avx512.c | |
+4 −3 | htscodecs/rANS_static32x16pr_neon.c | |
+5 −5 | htscodecs/rANS_static32x16pr_sse4.c | |
+36 −6 | htscodecs/rANS_static4x16pr.c | |
+129 −37 | htscodecs/tokenise_name3.c | |
+7 −1 | htscodecs/utils.c | |
+15 −5 | htscodecs/utils.h | |
+5 −1 | m4/ax_check_compile_flag.m4 | |
+42 −0 | m4/ax_search_libs_rev.m4 | |
+0 −64 | m4/zlib.m4 | |
+10 −3 | tests/arith.test | |
+ − | tests/dat/arith/u32.1 | |
+ − | tests/dat/arith/u32.4 | |
+ − | tests/dat/arith/u32.65 | |
+ − | tests/dat/arith/u32.9 | |
+ − | tests/dat/u32 | |
+7 −1 | tests/entropy.c |