From cb8f462b570706064cc3134e52990a08a12e5cdf Mon Sep 17 00:00:00 2001
From: Rob Davies <rmd+git@sanger.ac.uk>
Date: Wed, 15 Feb 2023 16:16:49 +0000
Subject: [PATCH] Update to htscodecs v1.4.0

  * Fix newer clang warning of unused variable.
  * Improvements for intel -m32 builds.
  * Check pthread_once() return value and print diagnostic
  * Add error checking to hist8() and hist1_4()
  * Print FAIL for xyz_compress() failures
  * Detect Neon capability at runtime via operating system APIs
  * Improve checks for pthread calls on FreeBSD
  * Update hts_pack to operate in line with the spec.
  * Switch MacOS CI tests to an ARM-based image
  * Remove overly aggressive buffer overflow checking in rans O1 decoder
  * Add arth+bzip2 (EXT flag) test file
  * Remove defunct libz from autoconf and make lack of bz2 fail
  * Add arith+bzip2 support to name tokeniser
---
 htscodecs | 2 +-
 1 file changed, 1 insertion(+), 1 deletion(-)

diff --git a/htscodecs b/htscodecs
index 3ef17f6fb..cd0737fff 160000
--- a/htscodecs
+++ b/htscodecs
@@ -1 +1 @@
-Subproject commit 3ef17f6fb5b8b6b0ad2d4c1c562165664f0703f8
+Subproject commit cd0737fff5893b0842b047da5aa3209e5f65442c