From 6e87c0adb80916926f8c437d373dce4edf213dff Mon Sep 17 00:00:00 2001 From: andrewjpage Date: Mon, 23 Jan 2017 13:25:02 +0000 Subject: [PATCH] update 108 to 118 --- bin/download_fasta_database | 2 +- bin/download_mlst_databases | 2 +- bin/get_emm_sequence_type | 2 +- bin/get_sequence_type | 2 +- 4 files changed, 4 insertions(+), 4 deletions(-) diff --git a/bin/download_fasta_database b/bin/download_fasta_database index 73ec5c1..6feb150 100755 --- a/bin/download_fasta_database +++ b/bin/download_fasta_database @@ -65,7 +65,7 @@ USAGE ; $base_directory ||= $ENV{MLST_DATABASES}; -$base_directory ||= '/lustre/scratch108/pathogen/pathpipe/mlst'; +$base_directory ||= '/lustre//lustre/scratch118/infgen/pathogen/pathpipe/mlst'; $url ||= 'ftp://ftp.cdc.gov/pub/infectious_diseases/biotech/tsemm/tofasta.tfa'; $species ||= 'Streptococcus pyogenes emm'; $gene_name ||= 'emm'; diff --git a/bin/download_mlst_databases b/bin/download_mlst_databases index 52f5993..7d0d98c 100755 --- a/bin/download_mlst_databases +++ b/bin/download_mlst_databases @@ -49,7 +49,7 @@ USAGE ; $base_directory ||= $ENV{MLST_DATABASES}; -$base_directory ||= '/lustre/scratch108/pathogen/pathpipe/mlst'; +$base_directory ||= '/lustre//lustre/scratch118/infgen/pathogen/pathpipe/mlst'; $config_file ||= 'http://pubmlst.org/data/dbases.xml'; diff --git a/bin/get_emm_sequence_type b/bin/get_emm_sequence_type index d22b840..1371d07 100755 --- a/bin/get_emm_sequence_type +++ b/bin/get_emm_sequence_type @@ -80,7 +80,7 @@ USAGE ; $base_directory ||= $ENV{MLST_DATABASES}; -$base_directory ||= '/lustre/scratch108/pathogen/pathpipe/mlst'; +$base_directory ||= '/lustre//lustre/scratch118/infgen/pathogen/pathpipe/mlst'; # Multiple versions of blast lying around, so use a particular one if possible # Warns if the user's preferred executable cannot be found; errors if defaults are also missing diff --git a/bin/get_sequence_type b/bin/get_sequence_type index 1eb3e92..11efe25 100755 --- a/bin/get_sequence_type +++ b/bin/get_sequence_type @@ -75,7 +75,7 @@ USAGE ; $base_directory ||= $ENV{MLST_DATABASES}; -$base_directory ||= '/lustre/scratch108/pathogen/pathpipe/mlst'; +$base_directory ||= '/lustre//lustre/scratch118/infgen/pathogen/pathpipe/mlst'; # Multiple versions of blast lying around, so use a particular one if possible # Warns if the user's preferred executable cannot be found; errors if defaults are also missing