diff --git a/sapporo/wes-ro-terms.csv b/sapporo/wes-ro-terms.csv index 4eaf9d1..e6a3d69 100644 --- a/sapporo/wes-ro-terms.csv +++ b/sapporo/wes-ro-terms.csv @@ -1,62 +1,20 @@ -term,type,label,description,domain,range -SapporoConfiguration,Class,sapporo configuration,Configuration parameters for Sapporo-service,, -configuration,Property,configuration,Configuration parameters for Sapporo-service,SapporoService,SapporoConfiguration -getRuns,Property,get runs,Get runs mode parameter of Sapporo-service,SapporoConfiguration,bool -workflowAttachment,Property,workflow attachment,Workflow attachment mode parameter of Sapporo-service,SapporoConfiguration,bool -registeredOnlyMode,Property,registered only mode,Registered only mode parameter of Sapporo-service,SapporoConfiguration,bool -urlPrefix,Property,url prefix,URL prefix parameter of Sapporo-service,SapporoConfiguration,string -sapporoEndpoint,Property,sapporo endpoint,Sapporo endpoint parameter of Sapporo-service,SapporoConfiguration,string -sapporoConfig,Property,sapporo config,Sapporo config file,SapporoConfiguration,File -runSh,Property,run sh,Run.sh file,SapporoConfiguration,File -serviceInfo,Property,service info,Service info file,SapporoConfiguration,File -executableWorkflows,Property,executable workflows,Executable workflows file,SapporoConfiguration,File -SapporoService,Class,sapporo service,Sapporo-service as a test service,, -TestEnvironment,Class,test environment,Computational environment of the instance,, -os,Property,os,Operating system of the environment,TestEnvironment,string -osVersion,Property,os version,Operating system version of the environment,TestEnvironment,string -cpuArchitecture,Property,cpu architecture,CPU architecture of the environment,TestEnvironment,string -cpuCount,Property,cpu count,CPU count of the environment,TestEnvironment,int -totalMemory,Property,total memory,Total memory of the environment,TestEnvironment,int -freeDiskSpace,Property,free disk space,Free disk space of the environment,TestEnvironment,int -inDocker,Property,in docker,Is the environment running in a Docker container,TestEnvironment,bool -environment,Property,environment,Environment of the test instance,TestInstance,TestEnvironment -TestResult,Class,test result,Result of a test run,, -intermediateFiles,Property,intermediate files,Files that compose Sapporo's execution directory,TestResult,File -pid,Property,pid,Process ID of a test run,TestResult,int -stdout,Property,stdout,Stdout of a test run,TestResult,File -stderr,Property,stderr,Stderr of a test run,TestResult,File -exitCode,Property,exit code,Exit code of a test run,TestResult,int -state,Property,state,State of a test run,TestResult,string -outputs,Property,outputs,Output Files of a test run,TestResult,File -result,Property,result,Result of a test run,TestSuite,TestResult -runId,Property,run id,Run ID of a test run,TestResult,string -WorkflowAttachment,Class,workflow attachment,File attached to a workflow,, -uid,Property,uid,User ID of a file,File,string -gid,Property,uid,Group ID of a file,File,string -mode,Property,mode,File mode of a file,File,string -sha512,Property,sha512,SHA512 checksum of a file,File,string -lineCount,Property,line count,Line count of a file,File,int -attachment,Property,attachment,File attached to a workflow,ComputationalWorkflow,File -workflowParameters,Property,workflow parameters,Parameter file of a workflow,TestDefinition,File -workflowEngineParameters,Property,workflow engine parameters,Workflow engine parameters file,TestDefinition,File -yevisMetadata,Property,yevis metadata,Yevis metadata file,TestDefinition,File -cmd,Property,cmd,Executed command of a test run,TestDefinition,string -yevisTestId,Property,yevis test id,Yevis test ID,TestDefinition,string -IntermediateFile,Class,intermediate file,File that compose Sapporo's execution directory,, -OutputFile,Class,output file,Output file of a test run,, -yevisId,Property,yevis id,Workflow ID in a Yevis metadata file,ComputationalWorkflow,string -FileStats,Class,file stats,File statistics,, -stats,Property,stats,Statistics of a file,File,FileStats -generatedBy,Property,generated by,Software that generated a statistics,FileStats,string -totalReads,Property,total reads,Total reads of a sam/bam file,FileStats,int -mappedReads,Property,mapped reads,Mapped reads of a sam/bam file,FileStats,int -unmappedReads,Property,unmapped reads,Unmapped reads of a sam/bam file,FileStats,int -duplicateReads,Property,duplicate reads,Duplicate reads of a sam/bam file,FileStats,int -mappedRate,Property,mapped rate,Mapped rate of a sam/bam file,FileStats,float -unmappedRate,Property,unmapped rate,Unmapped rate of a sam/bam file,FileStats,float -duplicateRate,Property,duplicate rate,Duplicate rate of a sam/bam file,FileStats,float -variantCount,Property,variant count,Variant count of a vcf file,FileStats,int -snpsCount,Property,snps count,Snps count of a vcf file,FileStats,int -indelsCount,Property,indels count,Indels count of a vcf file,FileStats,int -format,Property,format,Edam format of a File,File,Format -Format,Class,format,Edam format of a File,, \ No newline at end of file +term,type,label,description,domain,range +Format,Class,format,Edam format of a File,, +uid,Property,uid,User ID of a file,File,string +gid,Property,uid,Group ID of a file,File,string +mode,Property,mode,File mode of a file,File,string +sha512,Property,sha512,SHA512 checksum of a file,File,string +lineCount,Property,line count,Line count of a file,File,int +stats,Property,stats,Statistics of a file,File,FileStats +format,Property,format,Edam format of a File,File,Format +generatedBy,Property,generated by,Software that generated a statistics,FileStats,string +totalReads,Property,total reads,Total reads of a sam/bam file,FileStats,int +mappedReads,Property,mapped reads,Mapped reads of a sam/bam file,FileStats,int +unmappedReads,Property,unmapped reads,Unmapped reads of a sam/bam file,FileStats,int +duplicateReads,Property,duplicate reads,Duplicate reads of a sam/bam file,FileStats,int +mappedRate,Property,mapped rate,Mapped rate of a sam/bam file,FileStats,float +unmappedRate,Property,unmapped rate,Unmapped rate of a sam/bam file,FileStats,float +duplicateRate,Property,duplicate rate,Duplicate rate of a sam/bam file,FileStats,float +variantCount,Property,variant count,Variant count of a vcf file,FileStats,int +snpsCount,Property,snps count,Snps count of a vcf file,FileStats,int +indelsCount,Property,indels count,Indels count of a vcf file,FileStats,int \ No newline at end of file