diff --git a/README.md b/README.md
index 2fda42cc..de07dabd 100644
--- a/README.md
+++ b/README.md
@@ -88,7 +88,7 @@ Search for scalac-scoverage-plugin.
 #### Excluding code from coverage stats
 
 You can exclude whole classes or packages by name. Pass a semicolon separated
-list of regexes to the 'excludedPackages' option.
+list of regexes to the `excludedPackages` option.
 
 For example:
 
@@ -98,6 +98,15 @@ The regular expressions are matched against the fully qualified class name, and
 
 Any matched classes will not be instrumented or included in the coverage report.
 
+You can also exclude files from being considered for instrumentation.
+
+    -P:scoverage:excludedFiles:.*\/two\/GoodCoverage;.*\/three\/.*
+
+Note: The `.scala` file extension needs to be omitted from the filename, if one is given.
+
+Note: These two options only work for Scala2. Right now Scala3 does not support
+a way to exclude packages or files from being instrumented.
+
 You can also mark sections of code with comments like:
 
     // $COVERAGE-OFF$
diff --git a/domain/src/main/scala/scoverage/domain/coverage.scala b/domain/src/main/scala/scoverage/domain/Coverage.scala
similarity index 97%
rename from domain/src/main/scala/scoverage/domain/coverage.scala
rename to domain/src/main/scala/scoverage/domain/Coverage.scala
index a6b8764c..1bc60b6e 100644
--- a/domain/src/main/scala/scoverage/domain/coverage.scala
+++ b/domain/src/main/scala/scoverage/domain/Coverage.scala
@@ -15,6 +15,7 @@ case class Coverage()
   private val statementsById = mutable.Map[Int, Statement]()
   override def statements = statementsById.values
   def add(stmt: Statement): Unit = statementsById.put(stmt.id, stmt)
+  def remove(id: Int): Unit = statementsById.remove(id)
 
   private val ignoredStatementsById = mutable.Map[Int, Statement]()
   override def ignoredStatements = ignoredStatementsById.values
diff --git a/plugin/src/main/scala/scoverage/CoverageFilter.scala b/plugin/src/main/scala/scoverage/CoverageFilter.scala
index 189720ad..a6db1108 100644
--- a/plugin/src/main/scala/scoverage/CoverageFilter.scala
+++ b/plugin/src/main/scala/scoverage/CoverageFilter.scala
@@ -3,6 +3,7 @@ package scoverage
 import scala.collection.mutable
 import scala.reflect.internal.util.Position
 import scala.reflect.internal.util.SourceFile
+import scala.tools.nsc.reporters.Reporter
 import scala.util.matching.Regex
 
 /** Methods related to filtering the instrumentation and coverage.
@@ -11,7 +12,7 @@ import scala.util.matching.Regex
   */
 trait CoverageFilter {
   def isClassIncluded(className: String): Boolean
-  def isFileIncluded(file: SourceFile): Boolean
+  def isFileIncluded(path: String): Boolean
   def isLineIncluded(position: Position): Boolean
   def isSymbolIncluded(symbolName: String): Boolean
   def getExcludedLineNumbers(sourceFile: SourceFile): List[Range]
@@ -21,15 +22,22 @@ object AllCoverageFilter extends CoverageFilter {
   override def getExcludedLineNumbers(sourceFile: SourceFile): List[Range] = Nil
   override def isLineIncluded(position: Position): Boolean = true
   override def isClassIncluded(className: String): Boolean = true
-  override def isFileIncluded(file: SourceFile): Boolean = true
+  override def isFileIncluded(path: String): Boolean = true
   override def isSymbolIncluded(symbolName: String): Boolean = true
 }
 
 class RegexCoverageFilter(
     excludedPackages: Seq[String],
     excludedFiles: Seq[String],
-    excludedSymbols: Seq[String]
+    excludedSymbols: Seq[String],
+    reporter: Reporter
 ) extends CoverageFilter {
+  if (excludedPackages.nonEmpty)
+    reporter.echo(s"scoverage excludedPackages: ${excludedPackages}")
+  if (excludedFiles.nonEmpty)
+    reporter.echo(s"scoverage excludedFiles: ${excludedFiles}")
+  if (excludedSymbols.nonEmpty)
+    reporter.echo(s"scoverage excludedSymbols: ${excludedSymbols}")
 
   val excludedClassNamePatterns = excludedPackages.map(_.r.pattern)
   val excludedFilePatterns = excludedFiles.map(_.r.pattern)
@@ -54,11 +62,11 @@ class RegexCoverageFilter(
     )
   }
 
-  override def isFileIncluded(file: SourceFile): Boolean = {
-    def isFileMatch(file: SourceFile) = excludedFilePatterns.exists(
-      _.matcher(file.path.replace(".scala", "")).matches
+  override def isFileIncluded(path: String): Boolean = {
+    def isFileMatch(path: String) = excludedFilePatterns.exists(
+      _.matcher(path.replace(".scala", "")).matches
     )
-    excludedFilePatterns.isEmpty || !isFileMatch(file)
+    excludedFilePatterns.isEmpty || !isFileMatch(path)
   }
 
   /** True if the line containing `position` has not been excluded by a magic comment.
diff --git a/plugin/src/main/scala/scoverage/ScoveragePlugin.scala b/plugin/src/main/scala/scoverage/ScoveragePlugin.scala
index 90235d7e..dc8bceb3 100644
--- a/plugin/src/main/scala/scoverage/ScoveragePlugin.scala
+++ b/plugin/src/main/scala/scoverage/ScoveragePlugin.scala
@@ -112,7 +112,8 @@ class ScoverageInstrumentationComponent(
     coverageFilter = new RegexCoverageFilter(
       options.excludedPackages,
       options.excludedFiles,
-      options.excludedSymbols
+      options.excludedSymbols,
+      reporter
     )
     new File(options.dataDir).mkdirs() // ensure data directory is created
   }
@@ -230,8 +231,9 @@ class ScoverageInstrumentationComponent(
     ): Tree = {
       safeSource(tree) match {
         case None =>
-          reporter.echo(
-            s"[warn] Could not instrument [${tree.getClass.getSimpleName}/${tree.symbol}]. No pos."
+          reporter.warning(
+            NoPosition,
+            s"Could not instrument [${tree.getClass.getSimpleName}/${tree.symbol}]."
           )
           tree
         case Some(source) =>
@@ -351,7 +353,7 @@ class ScoverageInstrumentationComponent(
     def isClassIncluded(symbol: Symbol): Boolean =
       coverageFilter.isClassIncluded(symbol.fullNameString)
     def isFileIncluded(source: SourceFile): Boolean =
-      coverageFilter.isFileIncluded(source)
+      coverageFilter.isFileIncluded(source.path)
     def isStatementIncluded(pos: Position): Boolean =
       coverageFilter.isLineIncluded(pos)
     def isSymbolIncluded(symbol: Symbol): Boolean =
@@ -361,7 +363,7 @@ class ScoverageInstrumentationComponent(
       Location.fromGlobal(global)(t) match {
         case Some(loc) => this.location = loc
         case _ =>
-          reporter.warning(t.pos, s"[warn] Cannot update location for $t")
+          reporter.warning(t.pos, s"Cannot update location for $t")
       }
     }
 
diff --git a/plugin/src/test/scala/scoverage/RegexCoverageFilterTest.scala b/plugin/src/test/scala/scoverage/RegexCoverageFilterTest.scala
index 781df1e0..6fcc4f46 100644
--- a/plugin/src/test/scala/scoverage/RegexCoverageFilterTest.scala
+++ b/plugin/src/test/scala/scoverage/RegexCoverageFilterTest.scala
@@ -4,50 +4,56 @@ import scala.reflect.internal.util.BatchSourceFile
 import scala.reflect.internal.util.NoFile
 import scala.reflect.internal.util.SourceFile
 import scala.reflect.io.VirtualFile
+import scala.tools.nsc.reporters.ConsoleReporter
+import scala.tools.nsc.Settings
 
 import munit.FunSuite
 
 class RegexCoverageFilterTest extends FunSuite {
 
+  val reporter = new ConsoleReporter(new Settings())
+
   test("isClassIncluded should return true for empty excludes") {
-    assert(new RegexCoverageFilter(Nil, Nil, Nil).isClassIncluded("x"))
+    assert(
+      new RegexCoverageFilter(Nil, Nil, Nil, reporter).isClassIncluded("x")
+    )
   }
 
   test("should not crash for empty input") {
-    assert(new RegexCoverageFilter(Nil, Nil, Nil).isClassIncluded(""))
+    assert(new RegexCoverageFilter(Nil, Nil, Nil, reporter).isClassIncluded(""))
   }
 
   test("should exclude scoverage -> scoverage") {
     assert(
-      !new RegexCoverageFilter(Seq("scoverage"), Nil, Nil)
+      !new RegexCoverageFilter(Seq("scoverage"), Nil, Nil, reporter)
         .isClassIncluded("scoverage")
     )
   }
 
   test("should include scoverage -> scoverageeee") {
     assert(
-      new RegexCoverageFilter(Seq("scoverage"), Nil, Nil)
+      new RegexCoverageFilter(Seq("scoverage"), Nil, Nil, reporter)
         .isClassIncluded("scoverageeee")
     )
   }
 
   test("should exclude scoverage* -> scoverageeee") {
     assert(
-      !new RegexCoverageFilter(Seq("scoverage*"), Nil, Nil)
+      !new RegexCoverageFilter(Seq("scoverage*"), Nil, Nil, reporter)
         .isClassIncluded("scoverageeee")
     )
   }
 
   test("should include eee -> scoverageeee") {
     assert(
-      new RegexCoverageFilter(Seq("eee"), Nil, Nil)
+      new RegexCoverageFilter(Seq("eee"), Nil, Nil, reporter)
         .isClassIncluded("scoverageeee")
     )
   }
 
   test("should exclude .*eee -> scoverageeee") {
     assert(
-      !new RegexCoverageFilter(Seq(".*eee"), Nil, Nil)
+      !new RegexCoverageFilter(Seq(".*eee"), Nil, Nil, reporter)
         .isClassIncluded("scoverageeee")
     )
   }
@@ -56,91 +62,100 @@ class RegexCoverageFilterTest extends FunSuite {
 
   test("isFileIncluded should return true for empty excludes") {
     val file = new BatchSourceFile(abstractFile, Array.emptyCharArray)
-    assert(new RegexCoverageFilter(Nil, Nil, Nil).isFileIncluded(file))
+    assert(
+      new RegexCoverageFilter(Nil, Nil, Nil, reporter)
+        .isFileIncluded(file.path)
+    )
   }
 
   test("should exclude by filename") {
     val file = new BatchSourceFile(abstractFile, Array.emptyCharArray)
     assert(
-      !new RegexCoverageFilter(Nil, Seq("sammy"), Nil)
-        .isFileIncluded(file)
+      !new RegexCoverageFilter(Nil, Seq("sammy"), Nil, reporter)
+        .isFileIncluded(file.path)
     )
   }
 
   test("should exclude by regex wildcard") {
     val file = new BatchSourceFile(abstractFile, Array.emptyCharArray)
     assert(
-      !new RegexCoverageFilter(Nil, Seq("sam.*"), Nil)
-        .isFileIncluded(file)
+      !new RegexCoverageFilter(Nil, Seq("sam.*"), Nil, reporter)
+        .isFileIncluded(file.path)
     )
   }
 
   test("should not exclude non matching regex") {
     val file = new BatchSourceFile(abstractFile, Array.emptyCharArray)
     assert(
-      new RegexCoverageFilter(Nil, Seq("qweqeqwe"), Nil)
-        .isFileIncluded(file)
+      new RegexCoverageFilter(Nil, Seq("qweqeqwe"), Nil, reporter)
+        .isFileIncluded(file.path)
     )
   }
 
   val options = ScoverageOptions.default()
 
   test("isSymbolIncluded should return true for empty excludes") {
-    assert(new RegexCoverageFilter(Nil, Nil, Nil).isSymbolIncluded("x"))
+    assert(
+      new RegexCoverageFilter(Nil, Nil, Nil, reporter)
+        .isSymbolIncluded("x")
+    )
   }
 
   test("should not crash for empty input") {
-    assert(new RegexCoverageFilter(Nil, Nil, Nil).isSymbolIncluded(""))
+    assert(
+      new RegexCoverageFilter(Nil, Nil, Nil, reporter)
+        .isSymbolIncluded("")
+    )
   }
 
   test("should exclude scoverage -> scoverage") {
     assert(
-      !new RegexCoverageFilter(Nil, Nil, Seq("scoverage"))
+      !new RegexCoverageFilter(Nil, Nil, Seq("scoverage"), reporter)
         .isSymbolIncluded("scoverage")
     )
   }
 
   test("should include scoverage -> scoverageeee") {
     assert(
-      new RegexCoverageFilter(Nil, Nil, Seq("scoverage"))
+      new RegexCoverageFilter(Nil, Nil, Seq("scoverage"), reporter)
         .isSymbolIncluded("scoverageeee")
     )
   }
   test("should exclude scoverage* -> scoverageeee") {
     assert(
-      !new RegexCoverageFilter(Nil, Nil, Seq("scoverage*"))
+      !new RegexCoverageFilter(Nil, Nil, Seq("scoverage*"), reporter)
         .isSymbolIncluded("scoverageeee")
     )
   }
 
   test("should include eee -> scoverageeee") {
     assert(
-      new RegexCoverageFilter(Nil, Nil, Seq("eee"))
+      new RegexCoverageFilter(Nil, Nil, Seq("eee"), reporter)
         .isSymbolIncluded("scoverageeee")
     )
   }
 
   test("should exclude .*eee -> scoverageeee") {
     assert(
-      !new RegexCoverageFilter(Nil, Nil, Seq(".*eee"))
+      !new RegexCoverageFilter(Nil, Nil, Seq(".*eee"), reporter)
         .isSymbolIncluded("scoverageeee")
     )
   }
   test("should exclude scala.reflect.api.Exprs.Expr") {
     assert(
-      !new RegexCoverageFilter(Nil, Nil, options.excludedSymbols)
+      !new RegexCoverageFilter(Nil, Nil, options.excludedSymbols, reporter)
         .isSymbolIncluded("scala.reflect.api.Exprs.Expr")
     )
   }
   test("should exclude scala.reflect.macros.Universe.Tree") {
     assert(
-      !new RegexCoverageFilter(Nil, Nil, options.excludedSymbols)
+      !new RegexCoverageFilter(Nil, Nil, options.excludedSymbols, reporter)
         .isSymbolIncluded("scala.reflect.macros.Universe.Tree")
     )
   }
   test("should exclude scala.reflect.api.Trees.Tree") {
     assert(
-      !new RegexCoverageFilter(Nil, Nil, options.excludedSymbols)
+      !new RegexCoverageFilter(Nil, Nil, options.excludedSymbols, reporter)
         .isSymbolIncluded("scala.reflect.api.Trees.Tree")
     )
   }
@@ -158,7 +173,7 @@ class RegexCoverageFilterTest extends FunSuite {
         |8
         """.stripMargin
 
-    val numbers = new RegexCoverageFilter(Nil, Nil, Nil)
+    val numbers = new RegexCoverageFilter(Nil, Nil, Nil, reporter)
       .getExcludedLineNumbers(mockSourceFile(file))
     assertEquals(numbers, List.empty)
   }
@@ -182,7 +197,7 @@ class RegexCoverageFilterTest extends FunSuite {
         |16
         """.stripMargin
 
-    val numbers = new RegexCoverageFilter(Nil, Nil, Nil)
+    val numbers = new RegexCoverageFilter(Nil, Nil, Nil, reporter)
       .getExcludedLineNumbers(mockSourceFile(file))
     assertEquals(numbers, List(Range(4, 9), Range(12, 14)))
   }
@@ -205,7 +220,7 @@ class RegexCoverageFilterTest extends FunSuite {
         |15
         """.stripMargin
 
-    val numbers = new RegexCoverageFilter(Nil, Nil, Nil)
+    val numbers = new RegexCoverageFilter(Nil, Nil, Nil, reporter)
       .getExcludedLineNumbers(mockSourceFile(file))
     assertEquals(numbers, List(Range(4, 9), Range(12, 16)))
   }
@@ -228,7 +243,7 @@ class RegexCoverageFilterTest extends FunSuite {
         |15
         """.stripMargin
 
-    val numbers = new RegexCoverageFilter(Nil, Nil, Nil)
+    val numbers = new RegexCoverageFilter(Nil, Nil, Nil, reporter)
       .getExcludedLineNumbers(mockSourceFile(file))
     assertEquals(numbers, List(Range(4, 9), Range(12, 16)))
   }
diff --git a/reporter/src/test/scala/scoverage/reporter/IOUtilsTest.scala b/reporter/src/test/scala/scoverage/reporter/IOUtilsTest.scala
index 8f3bcfe2..a106988b 100644
--- a/reporter/src/test/scala/scoverage/reporter/IOUtilsTest.scala
+++ b/reporter/src/test/scala/scoverage/reporter/IOUtilsTest.scala
@@ -6,7 +6,6 @@ import java.util.UUID
 
 import munit.FunSuite
 import scoverage.domain.Constants
-import scoverage.reporter.IOUtils
 
 /** @author Stephen Samuel */
 class IOUtilsTest extends FunSuite {