Skip to content
New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

Pre commit config #190

Merged
merged 4 commits into from
Nov 15, 2024
Merged
Show file tree
Hide file tree
Changes from all commits
Commits
File filter

Filter by extension

Filter by extension

Conversations
Failed to load comments.
Loading
Jump to
Jump to file
Failed to load files.
Loading
Diff view
Diff view
4 changes: 2 additions & 2 deletions .pre-commit-config.yaml
Original file line number Diff line number Diff line change
Expand Up @@ -2,8 +2,8 @@ fail_fast: false
default_language_version:
python: python3
default_stages:
- Nonepre-commitNone
- Nonepre-pushNone
- pre-commit
- pre-push
minimum_pre_commit_version: 2.16.0
repos:
- repo: https://github.com/pre-commit/mirrors-prettier
Expand Down
Loading
Sorry, something went wrong. Reload?
Sorry, we cannot display this file.
Sorry, this file is invalid so it cannot be displayed.
Original file line number Diff line number Diff line change
@@ -0,0 +1,18 @@
name: Spatial clustering of spacial transcriptomics data with CellCharter
description: |
This tutorial demonstrate how to use CellCharter to cluster spatial transcriptomics data, obtained with the CosMx technology from Nanostring.
This method can also be used for spatial proteomics data.
link: https://cellcharter.readthedocs.io/en/latest/notebooks/cosmx_human_nsclc.html
image: icon.png
primary_category: Spatial
tags:
- compositional analysis
packages:
- CellCharter
- squidpy
- scvi
- scanpy
- anndata
authors:
- marcovarrone
- grst
Loading