diff --git a/CODE_OF_CONDUCT.html b/CODE_OF_CONDUCT.html index 9d65af9..227eb16 100644 --- a/CODE_OF_CONDUCT.html +++ b/CODE_OF_CONDUCT.html @@ -44,7 +44,7 @@

Contributor Code of Conduct

- Source: .github/CODE_OF_CONDUCT.md + Source: .github/CODE_OF_CONDUCT.md
diff --git a/articles/CHANGELOG.html b/articles/CHANGELOG.html index f6a9574..eddbd00 100644 --- a/articles/CHANGELOG.html +++ b/articles/CHANGELOG.html @@ -77,7 +77,7 @@

Changelog

- Source: vignettes/CHANGELOG.Rmd + Source: vignettes/CHANGELOG.Rmd
CHANGELOG.Rmd
diff --git a/articles/annotation_resources.html b/articles/annotation_resources.html index 8364ae5..45f7578 100644 --- a/articles/annotation_resources.html +++ b/articles/annotation_resources.html @@ -77,7 +77,7 @@

Annotation resources

- Source: vignettes/annotation_resources.Rmd + Source: vignettes/annotation_resources.Rmd
annotation_resources.Rmd
diff --git a/articles/cancer_gene_rank.html b/articles/cancer_gene_rank.html index 37d9ddb..cfa9acf 100644 --- a/articles/cancer_gene_rank.html +++ b/articles/cancer_gene_rank.html @@ -77,7 +77,7 @@

Cancer gene rank

- Source: vignettes/cancer_gene_rank.Rmd + Source: vignettes/cancer_gene_rank.Rmd
cancer_gene_rank.Rmd
diff --git a/articles/input.html b/articles/input.html index 5e95f85..ebc9d00 100644 --- a/articles/input.html +++ b/articles/input.html @@ -77,7 +77,7 @@

Input

- Source: vignettes/input.Rmd + Source: vignettes/input.Rmd
input.Rmd
diff --git a/articles/installation.html b/articles/installation.html index 1e1faf0..fa6b927 100644 --- a/articles/installation.html +++ b/articles/installation.html @@ -77,7 +77,7 @@

Installation

- Source: vignettes/installation.Rmd + Source: vignettes/installation.Rmd
installation.Rmd
diff --git a/articles/output.html b/articles/output.html index 48f8f25..cfbaff9 100644 --- a/articles/output.html +++ b/articles/output.html @@ -77,7 +77,7 @@

Output

- Source: vignettes/output.Rmd + Source: vignettes/output.Rmd
output.Rmd
diff --git a/articles/running.html b/articles/running.html index 7531bae..b4c3e3e 100644 --- a/articles/running.html +++ b/articles/running.html @@ -77,7 +77,7 @@

Running

- Source: vignettes/running.Rmd + Source: vignettes/running.Rmd
running.Rmd
diff --git a/authors.html b/authors.html index 0578890..0f95c03 100644 --- a/authors.html +++ b/authors.html @@ -57,7 +57,7 @@

Authors

Citation

-

Source: inst/CITATION

+

Source: inst/CITATION

Sigve Nakken, Sveinung Gundersen, Fabian L. M. Bernal, Dimitris Polychronopoulos, Eivind Hovig, and Jørgen Wesche. Comprehensive interrogation of gene lists from genome-scale cancer screens with oncoEnrichR (2023). Int J Cancer. https://doi.org/10.1002/ijc.34666

@Article{,
diff --git a/pkgdown.yml b/pkgdown.yml
index 98d8526..ad21b47 100644
--- a/pkgdown.yml
+++ b/pkgdown.yml
@@ -9,7 +9,7 @@ articles:
   installation: installation.html
   output: output.html
   running: running.html
-last_built: 2024-08-03T15:18Z
+last_built: 2024-08-07T13:27Z
 urls:
   reference: https://sigven.github.io/oncoEnrichR/reference
   article: https://sigven.github.io/oncoEnrichR/articles
diff --git a/reference/init_report.html b/reference/init_report.html
index 0f418c1..7ed5c44 100644
--- a/reference/init_report.html
+++ b/reference/init_report.html
@@ -44,7 +44,7 @@
 

   

       
Function that initiates oncoEnrichR report structure

-      Source: R/onco_enrichr.R
+      Source: R/onco_enrichr.R
       
init_report.Rd

     

 
diff --git a/reference/load_db.html b/reference/load_db.html
index d20da25..e96efe9 100644
--- a/reference/load_db.html
+++ b/reference/load_db.html
@@ -46,7 +46,7 @@
 

   

       
Load oncoEnrichR data repository

-      Source: R/onco_enrichr.R
+      Source: R/onco_enrichr.R
       
load_db.Rd

     

 
diff --git a/reference/onco_enrich.html b/reference/onco_enrich.html
index 7101e3d..f5509c6 100644
--- a/reference/onco_enrich.html
+++ b/reference/onco_enrich.html
@@ -54,7 +54,7 @@
 

   

       
Interrogate a gene list for cancer relevance

-      Source: R/onco_enrichr.R
+      Source: R/onco_enrichr.R
       
onco_enrich.Rd

     

 
diff --git a/reference/tidyeval.html b/reference/tidyeval.html
index fc66cae..10a59cf 100644
--- a/reference/tidyeval.html
+++ b/reference/tidyeval.html
@@ -44,7 +44,7 @@
 

   

       
Tidy eval helpers

-      Source: R/utils.R
+      Source: R/utils.R
       
tidyeval.Rd

     

 
diff --git a/reference/tissue_colors.html b/reference/tissue_colors.html
index 3170f5b..e2ac835 100644
--- a/reference/tissue_colors.html
+++ b/reference/tissue_colors.html
@@ -44,7 +44,7 @@
 

   

       
Colors for tissue types in the gene fitness plot section in oncoEnrichR

-      Source: R/data.R
+      Source: R/data.R
       
tissue_colors.Rd

     

 
diff --git a/reference/validate_db.html b/reference/validate_db.html
index 476d356..5a247c1 100644
--- a/reference/validate_db.html
+++ b/reference/validate_db.html
@@ -44,7 +44,7 @@
 

   

       
Function that validates the oncoEnrichR database object

-      Source: R/utils.R
+      Source: R/utils.R
       
validate_db.Rd

     

 
diff --git a/reference/validate_db_df.html b/reference/validate_db_df.html
index 39b3dd4..66e611d 100644
--- a/reference/validate_db_df.html
+++ b/reference/validate_db_df.html
@@ -44,7 +44,7 @@
 

   

       
Function that validates a particular db object (data.frame) in oncoEnrichR

-      Source: R/utils.R
+      Source: R/utils.R
       
validate_db_df.Rd

     

 
diff --git a/reference/write.html b/reference/write.html
index 892e8ea..24927d5 100644
--- a/reference/write.html
+++ b/reference/write.html
@@ -46,7 +46,7 @@
 

   

       
Write oncoEnrichR report object to output file

-      Source: R/onco_enrichr.R
+      Source: R/onco_enrichr.R
       
write.Rd