From 1971583c07c1762aabf40c52abfb412e2eecfc7a Mon Sep 17 00:00:00 2001 From: turquoisedragon2926 Date: Fri, 19 May 2023 17:14:08 -0400 Subject: [PATCH 01/38] added n-dim fft and restrict. dfno wip --- .gitignore | 2 + examples/dfno.jl | 129 ++++++++++++++++++++++++++++++++++++++++++ src/ParBroadcasted.jl | 17 +++++- src/ParDFT.jl | 23 +++++++- src/ParDiagonal.jl | 5 ++ src/ParIdentity.jl | 2 + src/ParKron.jl | 4 +- src/ParRestriction.jl | 40 +++++++++++++ 8 files changed, 216 insertions(+), 6 deletions(-) create mode 100644 examples/dfno.jl diff --git a/.gitignore b/.gitignore index a65b14a..3c49c90 100644 --- a/.gitignore +++ b/.gitignore @@ -6,3 +6,5 @@ examples/.ipynb_checkpoints *.svg *.png *.dot +*.mat +.DS_Store diff --git a/examples/dfno.jl b/examples/dfno.jl new file mode 100644 index 0000000..11b2195 --- /dev/null +++ b/examples/dfno.jl @@ -0,0 +1,129 @@ +using MPI +using ParametricOperators +using Parameters +using Profile +using MAT +using Shuffle +using Zygote +using Flux + +@with_kw struct ModelConfig + nx::Int + ny::Int + nz::Int + nt_in::Int = 1 + nt_out::Int = 1 + nc_in::Int = 1 + nc_out::Int = 1 + nc_lift::Int = 20 + mx::Int + my::Int + mz::Int + mt::Int + n_blocks::Int = 4 + dtype::DataType = Float32 + partition::Vector{Int} +end + +function dfno(config::ModelConfig) + + T = config.dtype + + function lifting(in_shape, lift_dim, out_features) + + layer = ParIdentity(T, 1) + + for dim in eachindex(in_shape) + if dim == lift_dim + layer = layer ⊗ ParMatrix(T, out_features, in_shape[dim]) + else + layer = layer ⊗ ParIdentity(T, in_shape[dim]) + end + end + + return layer + end + + function sconv() + + # Build 4D Fourier transform with real-valued FFT along time + fourier_x = ParDFT(Complex{T}, config.nx) + fourier_y = ParDFT(Complex{T}, config.ny) + fourier_z = ParDFT(Complex{T}, config.nz) + fourier_t = ParDFT(T, config.nt_out) + + # Build restrictions to low-frequency modes + restrict_x = ParRestriction(Complex{T}, Range(fourier_x), [1:config.mx, config.nx-config.mx+1:config.nx]) + restrict_y = ParRestriction(Complex{T}, Range(fourier_y), [1:config.my, config.ny-config.my+1:config.ny]) + restrict_z = ParRestriction(Complex{T}, Range(fourier_z), [1:config.mz]) + restrict_t = ParRestriction(Complex{T}, Range(fourier_t), [1:config.mt]) + + # Setup FFT-restrict pattern with Kroneckers + restrict_dft = (restrict_t * fourier_t) ⊗ + ((restrict_z ⊗ restrict_y ⊗ restrict_x) * (fourier_z ⊗ fourier_y ⊗ fourier_x)) ⊗ + ParIdentity(T, config.nc_lift) + + # Diagonal/mixing of modes on each channel + weight_diag = ParDiagonal(Complex{T}, Range(restrict_dft)) + + weight_mix = ParIdentity(Complex{T}, Range(weight_diag) ÷ config.nc_lift) ⊗ + ParMatrix(Complex{T}, config.nc_lift, config.nc_lift) + + sconv = restrict_dft' * weight_mix * weight_diag * restrict_dft + return sconv + end + + shape = [config.nc_in, config.nx, config.ny, config.nz, config.nt_in] + + # Lift Time and Channel dimension + lt = lifting(shape, 5, config.nt_out) + shape[5] = config.nt_out + + lc = lifting(shape, 1, config.nc_lift) + shape[1] = config.nc_lift + + network = lc * lt + + # Add all sconv blocks + for _ in eachindex(config.n_blocks) + sconv = sconv() + network = sconv * network + end + + # Project channel dimension + pc = lifting(shape, 1, config.nc_out) + shape[1] = config.nc_out + + network = pc * network + + return network +end + +config = ModelConfig(n_blocks=1, nx=64, ny=64, nz=1, nt_in = 10, nt_out=40, nc_lift=10, mx=4, my=4, mz=1, mt=8, partition=[1]) +network = dfno(config) + +θ = init(network) + +data = matread("./examples/ns_V1e-3_N5000_T50.mat")["u"] +data = reshape(data, :, config.nc_in, config.nx, config.ny, config.nz, config.nt_in + config.nt_out) + +n_data = 1 # 5000 +n_epochs = 1 +batch_size = 1 +step_length = 1e-3 + +for _ in 1:n_epochs + batch_indexes = [] + for start in 1:batch_size:n_data + push!(batch_indexes, start:start+batch_size-1) + end + shuffle!(batch_indexes) + for batch in batch_indexes + x_train = vec(data[batch, :, :, :, :, 1:config.nt_in]) + y_train = vec(data[batch, :, :, :, :, config.nt_in+1:end]) + + grads = gradient(params -> Flux.mse(network(params)*x_train, y_train), θ) + # scale!(step_length, grads) + # update!(θ, grads) + end +end \ No newline at end of file diff --git a/src/ParBroadcasted.jl b/src/ParBroadcasted.jl index 9b4c4a2..017d11e 100644 --- a/src/ParBroadcasted.jl +++ b/src/ParBroadcasted.jl @@ -26,10 +26,23 @@ rebuild(A::ParBroadcasted, cs) = ParBroadcasted(cs[1], A.comm, A.root) function (A::ParBroadcasted{D,R,L,Parametric,F})(params) where {D,R,L,F} @assert ast_location(A.op) == External θ = MPI.Comm_rank(A.comm) == A.root ? params[A.op] : nothing - local_params = Parameters(A.op => MPI.bcast(θ, A.root, A.comm)) + local_params = Dict(A.op => MPI.bcast(θ, A.root, A.comm)) return ParBroadcasted(A.op(local_params), A.comm, A.root) end (A::ParBroadcasted{D,R,L,<:Applicable,F})(x::X) where {D,R,L,F,X<:AbstractVector{D}} = A.op(x) (A::ParBroadcasted{D,R,L,<:Applicable,F})(x::X) where {D,R,L,F,X<:AbstractMatrix{D}} = A.op(x) -*(x::X, A::ParBroadcasted{D,R,Linear,<:Applicable,F}) where {D,R,F,X<:AbstractMatrix{D}} = x*A.op \ No newline at end of file +*(x::X, A::ParBroadcasted{D,R,Linear,<:Applicable,F}) where {D,R,F,X<:AbstractMatrix{D}} = x*A.op + +function ChainRulesCore.rrule(A::ParBroadcasted{D,R,L,Parametric,F}, params) where {D,R,L,F} + op_out = A(params) + function pullback(op) + θ_global = [MPI.Reduce(θ, MPI.SUM, op.root, op.comm) for θ in op.op.params] + if MPI.Comm_rank(op.comm) == op.root + return NoTangent(), θ_global + else + return NoTangent(), NoTangent() + end + end + return op_out, pullback +end \ No newline at end of file diff --git a/src/ParDFT.jl b/src/ParDFT.jl index 6ca2ee0..e6bdab4 100644 --- a/src/ParDFT.jl +++ b/src/ParDFT.jl @@ -1,4 +1,4 @@ -export ParDFT +export ParDFT, ParDFTN """ Fouier transform operator. Dispatchs real-valued fft if applicable. @@ -47,3 +47,24 @@ function from_Dict(::Type{ParDFT}, d) end A end + +""" +Fouier transform operator for n dimensional tensor. +""" +struct ParDFTN{N,T} <: ParLinearOperator{T,T,NonParametric,External} + shape::NTuple{N, Int} + n:: Int + ParDFTN(ns...; T = ComplexF32) = new{length(ns),T}(ns, prod(ns)) +end + +Domain(A::ParDFTN) = A.n +Range(A::ParDFTN) = A.n + +(A::ParDFTN{N,T})(x::X) where {N,T<:Complex,X<:AbstractVector{T}} = vec(fft(reshape(x, A.shape)) ./ T(sqrt(A.n))) + +(A::ParAdjoint{D,R,NonParametric,ParDFTN{N,T}})(x::X) where {D<:Complex,R,N,T<:Complex,X<:AbstractVector{T}} = vec(ifft(reshape(x, A.op.shape)) .* T(sqrt(A.op.n))) + +kron(A::ParDFT{T,T}, B::ParDFT{T,T}) where {T} = ParDFTN(B.n, A.n, T=T) +kron(A::ParDFT{T,T}, B::ParDFTN{N,T}) where {N,T} = ParDFTN(B.shape..., A.n, T=T) +kron(A::ParDFTN{N,T}, B::ParDFT{T,T}) where {N,T} = ParDFTN(B.n, A.shape..., T=T) +kron(A::ParDFTN{N,T}, B::ParDFTN{M,T}) where {M,N,T} = ParDFTN(B.shape..., A.shape..., T=T) diff --git a/src/ParDiagonal.jl b/src/ParDiagonal.jl index 8797204..727ed44 100644 --- a/src/ParDiagonal.jl +++ b/src/ParDiagonal.jl @@ -37,3 +37,8 @@ function from_Dict(::Type{ParDiagonal}, d) dtype = Data_TYPES[ts] ParDiagonal(dtype, d["n"]) end + +function distribute(A::ParDiagonal{T}, comm::MPI.Comm = MPI.COMM_WORLD) where {T} + local_n = local_size(A.n, MPI.Comm_rank(comm), MPI.Comm_size(comm)) + return ParDiagonal(T, local_n) +end \ No newline at end of file diff --git a/src/ParIdentity.jl b/src/ParIdentity.jl index e0d3367..d93f99d 100644 --- a/src/ParIdentity.jl +++ b/src/ParIdentity.jl @@ -31,3 +31,5 @@ function from_Dict(::Type{ParIdentity}, d) dtype = Data_TYPES[ts] ParIdentity(dtype, d["n"]) end + +kron(A::ParIdentity{T}, B::ParIdentity{T}) where {T} = ParIdentity(T,B.n*A.n) diff --git a/src/ParKron.jl b/src/ParKron.jl index ed78251..9ab69eb 100644 --- a/src/ParKron.jl +++ b/src/ParKron.jl @@ -63,7 +63,7 @@ struct ParKron{D,R,P,F,N} <: ParSeparableOperator{D,R,P,Internal} return new{D,R,P,typeof(ops),N}(ops, order) end - function ParKron(D,R,P,ops,order) + function ParKron(D::DataType,R::DataType,P,ops,order) return new{D,R,P,typeof(ops),length(ops)}(ops, order) end end @@ -255,8 +255,6 @@ function distribute(A::ParKron, dims_in, dims_out=dims_in, parent_comm=MPI.COMM_ for i in 1:N - @show size_curr - # Get operator i o = A.order[i] d = N-o+1 diff --git a/src/ParRestriction.jl b/src/ParRestriction.jl index 488cb39..3ae5295 100644 --- a/src/ParRestriction.jl +++ b/src/ParRestriction.jl @@ -53,3 +53,43 @@ function from_Dict(::Type{ParRestriction}, d) dtype = Data_TYPES[ts] ParRestriction(dtype, d["n"], ranges) end + +""" +Restriction operator for n dimensional tensor. +""" +struct ParRestrictionN{N,T} <: ParLinearOperator{T,T,NonParametric,External} + shape::NTuple{N, Int} + ranges::Vector{Vector{Int}} + ParRestrictionN(T, shape, ranges) = new{length(shape), T}(shape, ranges) + ParRestrictionN(shape, ranges) = new{length(shape), Float64}(shape, ranges) +end + +Domain(A::ParRestrictionN) = prod(A.shape) +Range(A::ParRestrictionN) = prod(map(range -> length(range), A.ranges)) + +function (A::ParRestrictionN{N,T})(x::X) where {N,T,X<:AbstractVector{T}} + batch_size = 1 # size(x)[2] + y = zeros_like(x, (Range(A), batch_size)) + copyto!(view(y, :), view(reshape(x, A.shape), A.ranges...)) + return vec(y) +end + +function (A::ParAdjoint{T,T,NonParametric,ParRestrictionN{N,T}})(y::Y) where {N,T,Y<:AbstractVector{T}} + batch_size = 1 # size(y)[2] + x = zeros_like(y, (Domain(A.op), batch_size)) + copyto!(view(reshape( x, A.op.shape), A.op.ranges...), view(y, :)) + return x +end + +kron(A::ParRestriction{T}, B::ParRestriction{T}) where {T} = ParRestrictionN(T, (B.n, A.n), [vec(hcat(B.ranges...)), vec(hcat(A.ranges...))]) +kron(A::ParRestriction{T}, B::ParRestrictionN{N, T}) where {N, T} = ParRestrictionN(T, (B.shape..., A.n), [B.ranges..., vec(hcat(A.ranges...))]) +kron(A::ParRestrictionN{N, T}, B::ParRestriction{T}) where {N, T} = ParRestrictionN(T, (B.n, A.shape...), [vec(hcat(B.ranges...)), A.ranges...]) +kron(A::ParRestrictionN{M, T}, B::ParRestrictionN{N, T}) where {M, N, T} = ParRestrictionN(T, (B.shape..., A.shape...), [B.ranges..., A.ranges...]) + +# function ChainRulesCore.rrule(A::ParRestrictionN{T}, params) where {T} +# op_out = A(params) +# function pullback(op) +# +# end +# return op_out, pullback +# end \ No newline at end of file From 56216774a04050af5c2ec99c2479a88450ae0141 Mon Sep 17 00:00:00 2001 From: turquoisedragon2926 Date: Fri, 26 May 2023 01:04:58 -0400 Subject: [PATCH 02/38] Added rrule for Restriction --- examples/dfno.jl | 50 ++++++++++++++++++++++++++++++++++++++----- src/ParRestriction.jl | 38 ++++++++++++++++++++++++++------ 2 files changed, 76 insertions(+), 12 deletions(-) diff --git a/examples/dfno.jl b/examples/dfno.jl index 11b2195..9b49e6f 100644 --- a/examples/dfno.jl +++ b/examples/dfno.jl @@ -6,6 +6,8 @@ using MAT using Shuffle using Zygote using Flux +using PyPlot +using DrWatson @with_kw struct ModelConfig nx::Int @@ -107,7 +109,7 @@ network = dfno(config) data = matread("./examples/ns_V1e-3_N5000_T50.mat")["u"] data = reshape(data, :, config.nc_in, config.nx, config.ny, config.nz, config.nt_in + config.nt_out) -n_data = 1 # 5000 +n_data = 1 n_epochs = 1 batch_size = 1 step_length = 1e-3 @@ -122,8 +124,46 @@ for _ in 1:n_epochs x_train = vec(data[batch, :, :, :, :, 1:config.nt_in]) y_train = vec(data[batch, :, :, :, :, config.nt_in+1:end]) - grads = gradient(params -> Flux.mse(network(params)*x_train, y_train), θ) - # scale!(step_length, grads) - # update!(θ, grads) + grads = gradient(params -> Flux.mse(network(params)*x_train, y_train), θ)[1] + + scale!(step_length, grads) + update!(θ, grads) end -end \ No newline at end of file +end + +fig = figure(figsize=(20, 12)) + +for i = 1:5 + + j = i + n_data + + x_sample = vec(data[j, :, :, :, :, 1:config.nt_in]) + y_sample = network(θ)*x_sample + y_sample = reshape(y_sample, 64, 64, 40) + + subplot(4,5,i) + imshow(reshape(data[j, :, :, :, :, 1], 64, 64)) + title("x") + + subplot(4,5,i+5) + imshow(reshape(data[j, :, :, :, :, 50], 64, 64), vmin=0, vmax=1) + title("true y") + + subplot(4,5,i+10) + imshow(reshape(y_sample[:, :, 40], 64, 64), vmin=0, vmax=1) + title("predict y") + + subplot(4,5,i+15) + imshow(5f0 .* reshape(abs.(vec(data[j, :, :, :, :, 50])-vec(y_sample[:, :, 40])), 64, 64), vmin=0, vmax=1) + title("5X abs difference") + +end +tight_layout() + +sim_name = "2D_FNO" +exp_name = "navier_stokes" +save_dict = @strdict exp_name +plot_path = "./plots" # plotsdir(sim_name, savename(save_dict; digits=6)) +fig_name = @strdict n_epochs batch_size # Loss modes width learning_rate epochs s n d nt dt AN ntrain nvalid +safesave(joinpath(plot_path, savename(fig_name; digits=6)*"_2D_dfno.png"), fig); +close(fig) diff --git a/src/ParRestriction.jl b/src/ParRestriction.jl index 3ae5295..0baea22 100644 --- a/src/ParRestriction.jl +++ b/src/ParRestriction.jl @@ -86,10 +86,34 @@ kron(A::ParRestriction{T}, B::ParRestrictionN{N, T}) where {N, T} = ParRestricti kron(A::ParRestrictionN{N, T}, B::ParRestriction{T}) where {N, T} = ParRestrictionN(T, (B.n, A.shape...), [vec(hcat(B.ranges...)), A.ranges...]) kron(A::ParRestrictionN{M, T}, B::ParRestrictionN{N, T}) where {M, N, T} = ParRestrictionN(T, (B.shape..., A.shape...), [B.ranges..., A.ranges...]) -# function ChainRulesCore.rrule(A::ParRestrictionN{T}, params) where {T} -# op_out = A(params) -# function pullback(op) -# -# end -# return op_out, pullback -# end \ No newline at end of file +function ChainRulesCore.rrule(A::ParRestrictionN{N, T}, x::X) where {N,T,X<:AbstractVector{T}} + op_out = A(x) + function pullback(op) + return (NoTangent(), A'(op)) + end + return op_out, pullback +end + +function ChainRulesCore.rrule(A::ParAdjoint{T,T,NonParametric,ParRestrictionN{N,T}}, x::X) where {N,T,X<:AbstractVector{T}} + op_out = A(x) + function pullback(op) + return (NoTangent(), A.op(op)) + end + return op_out, pullback +end + +function ChainRulesCore.rrule(A::ParRestriction{T}, x::X) where {T,X<:AbstractMatrix{T}} + op_out = A(x) + function pullback(op) + return (NoTangent(), A'(op)) + end + return op_out, pullback +end + +function ChainRulesCore.rrule(A::ParAdjoint{T,T,NonParametric,ParRestriction{T}}, x::X) where {T,X<:AbstractMatrix{T}} + op_out = A(x) + function pullback(op) + return (NoTangent(), A.op(op)) + end + return op_out, pullback +end From f13c9772b2fb1daffcf2036adcabc891ee82e924 Mon Sep 17 00:00:00 2001 From: turquoisedragon2926 Date: Mon, 21 Aug 2023 10:32:50 -0400 Subject: [PATCH 03/38] Added N dim ParMatrix --- Project.toml | 1 + src/ParDFT.jl | 15 ++++--- src/ParMatrix.jl | 105 +++++++++++++++++++++++++++++++++++++++++++++-- 3 files changed, 112 insertions(+), 9 deletions(-) diff --git a/Project.toml b/Project.toml index dfe68d9..fe102f1 100644 --- a/Project.toml +++ b/Project.toml @@ -15,5 +15,6 @@ LRUCache = "8ac3fa9e-de4c-5943-b1dc-09c6b5f20637" LaTeXStrings = "b964fa9f-0449-5b57-a5c2-d3ea65f4040f" MPI = "da04e1cc-30fd-572f-bb4f-1f8673147195" Match = "7eb4fadd-790c-5f42-8a69-bfa0b872bfbf" +OMEinsum = "ebe7aa44-baf0-506c-a96f-8464559b3922" Random = "9a3f8284-a2c9-5f02-9a11-845980a1fd5c" UUIDs = "cf7118a7-6976-5b1a-9a39-7adc72f591a4" diff --git a/src/ParDFT.jl b/src/ParDFT.jl index e6bdab4..9700bf6 100644 --- a/src/ParDFT.jl +++ b/src/ParDFT.jl @@ -23,12 +23,14 @@ Range(A::ParDFT) = A.m complexity(A::ParDFT{D,R}) where {D,R} = elementwise_multiplication_cost(R)*A.n*log2(A.n) -(A::ParDFT{D,R})(x::X) where {D<:Complex,R,X<:AbstractMatrix{D}} = convert(Matrix{R}, fft(x, 1) ./ sqrt(A.n)) -(A::ParDFT{D,R})(x::X) where {D<:Real,R,X<:AbstractMatrix{D}} = convert(Matrix{R}, rfft(x, 1) ./ sqrt(A.n)) +# TODO: Address scaling constants + +(A::ParDFT{D,R})(x::X) where {D<:Complex,R,X<:AbstractMatrix{D}} = convert(Matrix{R}, fft(x, 1)) # ./ sqrt(A.n) +(A::ParDFT{D,R})(x::X) where {D<:Real,R,X<:AbstractMatrix{D}} = convert(Matrix{R}, rfft(x, 1)) # ./ sqrt(A.n) (A::ParDFT{D,R})(x::X) where {D,R,X<:AbstractVector{D}} = vec(A(reshape(x, length(x), 1))) -(A::ParAdjoint{D,R,NonParametric,ParDFT{D,R}})(x::X) where {D<:Complex,R,X<:AbstractMatrix{R}} = ifft(x, 1).*convert(real(D), sqrt(A.op.n)) -(A::ParAdjoint{D,R,NonParametric,ParDFT{D,R}})(x::X) where {D<:Real,R,X<:AbstractMatrix{R}} = irfft(x, A.op.n, 1).*convert(D, sqrt(A.op.n)) +(A::ParAdjoint{D,R,NonParametric,ParDFT{D,R}})(x::X) where {D<:Complex,R,X<:AbstractMatrix{R}} = ifft(x, 1) # .* convert(real(D), sqrt(A.op.n)) +(A::ParAdjoint{D,R,NonParametric,ParDFT{D,R}})(x::X) where {D<:Real,R,X<:AbstractMatrix{R}} = irfft(x, A.op.n, 1) # .* convert(D, sqrt(A.op.n)) (A::ParAdjoint{D,R,NonParametric,ParDFT{D,R}})(x::X) where {D,R,X<:AbstractVector{R}} = vec(A(reshape(x, length(x), 1))) to_Dict(A::ParDFT{D,R}) where {D,R} = Dict{String, Any}("type" => "ParDFT", "T" => string(D), "n" => A.n, "m" => A.m) @@ -60,9 +62,10 @@ end Domain(A::ParDFTN) = A.n Range(A::ParDFTN) = A.n -(A::ParDFTN{N,T})(x::X) where {N,T<:Complex,X<:AbstractVector{T}} = vec(fft(reshape(x, A.shape)) ./ T(sqrt(A.n))) +# TODO: Address scaling constants -(A::ParAdjoint{D,R,NonParametric,ParDFTN{N,T}})(x::X) where {D<:Complex,R,N,T<:Complex,X<:AbstractVector{T}} = vec(ifft(reshape(x, A.op.shape)) .* T(sqrt(A.op.n))) +(A::ParDFTN{N,T})(x::X) where {N,T<:Complex,X<:AbstractVector{T}} = vec(fft(reshape(x, A.shape))) # ./ T(sqrt(A.n))) +(A::ParAdjoint{D,R,NonParametric,ParDFTN{N,T}})(x::X) where {D<:Complex,R,N,T<:Complex,X<:AbstractVector{T}} = vec(ifft(reshape(x, A.op.shape))) # .* T(sqrt(A.op.n))) kron(A::ParDFT{T,T}, B::ParDFT{T,T}) where {T} = ParDFTN(B.n, A.n, T=T) kron(A::ParDFT{T,T}, B::ParDFTN{N,T}) where {N,T} = ParDFTN(B.shape..., A.n, T=T) diff --git a/src/ParMatrix.jl b/src/ParMatrix.jl index 193475e..d71da2e 100644 --- a/src/ParMatrix.jl +++ b/src/ParMatrix.jl @@ -1,4 +1,7 @@ -export ParMatrix +export ParMatrix, ParMatrixN + +using Random +using OMEinsum """ Dense matrix operator. @@ -18,12 +21,28 @@ Range(A::ParMatrix) = A.m complexity(A::ParMatrix{T}) where {T} = elementwise_multiplication_cost(T)*A.n*A.m +# TODO: Fix init scheme + function init!(A::ParMatrix{T}, d::Parameters) where {T<:Real} - d[A] = rand(T, A.m, A.n)/convert(T, sqrt(A.m*A.n)) + + rng = Random.seed!(1234) + + # glorot_uniform init for dfno, does a lot better for some reason + + scale = sqrt(24.0f0 / sum((A.n, A.m))) + d[A] = (rand(rng, T, (A.n, A.m)) .- 0.5f0) .* scale + + # d[A] = rand(T, A.n, A.m)/convert(T, sqrt(A.m*A.n)) + + d[A] = permutedims(d[A], [2, 1]) end +# TODO: Remove seeds. Currently exists to match implementation to Francis's FNO + function init!(A::ParMatrix{T}, d::Parameters) where {T<:Complex} - d[A] = rand(T, A.m, A.n)/convert(real(T), sqrt(A.m*A.n)) + Random.seed!(1234) + d[A] = rand(T, A.n, A.m)/convert(real(T), sqrt(A.m*A.n)) + d[A] = permutedims(d[A], [2, 1]) end (A::ParParameterized{T,T,Linear,ParMatrix{T},V})(x::X) where {T,V,X<:AbstractVector{T}} = A.params*x @@ -64,3 +83,83 @@ function from_Dict(::Type{ParMatrix}, d) end ParMatrix(dtype, d["m"], d["n"], mid) end + +""" +Dense N dimensional matrix operator. +""" +struct ParMatrixN{N,M,O,T} <: ParLinearOperator{T,T,Parametric,External} + weight_order::Tuple{Vararg{Int,N}} + weight_shape::Tuple{Vararg{Int,N}} + + input_order::Tuple{Vararg{Int,M}} + input_shape::Tuple{Vararg{Int,M}} + + target_order::Tuple{Vararg{Int,O}} + target_shape::Tuple{Vararg{Int,O}} + id::Any + + ParMatrixN(T::DataType, wo::Tuple{Vararg{Int,N}}, ws::Tuple{Vararg{Int,N}}, io::Tuple{Vararg{Int,M}}, is::Tuple{Vararg{Int,M}}, to::Tuple{Vararg{Int,O}}, ts::Tuple{Vararg{Int,O}}, id) where {N, M, O} = new{N,M,O,T}(wo, ws, io, is, to, ts, id) + ParMatrixN(wo::Tuple{Vararg{Int,N}}, ws::Tuple{Vararg{Int,N}}, io::Tuple{Vararg{Int,M}}, is::Tuple{Vararg{Int,M}}, to::Tuple{Vararg{Int,O}}, ts::Tuple{Vararg{Int,O}}, id) where {N, M, O} = new{N,M,O,Float64}(wo, ws, io, is, to, ts, id) + ParMatrixN(T::DataType, wo::Tuple{Vararg{Int,N}}, ws::Tuple{Vararg{Int,N}}, io::Tuple{Vararg{Int,M}}, is::Tuple{Vararg{Int,M}}, to::Tuple{Vararg{Int,O}}, ts::Tuple{Vararg{Int,O}}) where {N, M, O} = new{N,M,O,T}(wo, ws, io, is, to, ts, uuid4(Random.GLOBAL_RNG)) + ParMatrixN(wo::Tuple{Vararg{Int,N}}, ws::Tuple{Vararg{Int,N}}, io::Tuple{Vararg{Int,M}}, is::Tuple{Vararg{Int,M}}, to::Tuple{Vararg{Int,O}}, ts::Tuple{Vararg{Int,O}}) where {N, M, O} = new{N,M,O,Float64}(wo, ws, io, is, to, ts, uuid4(Random.GLOBAL_RNG)) +end + +Domain(A::ParMatrixN) = prod(A.input_shape) +Range(A::ParMatrixN) = prod(A.target_shape) + +# TODO: Remove seeds + +function init!(A::ParMatrixN{N,M,O,T}, d::Parameters) where {N,M,O,T<:Real} + Random.seed!(1234) + d[A] = rand(T, A.weight_shape...) ./ convert(T, sqrt(prod(A.weight_shape))) +end + +function init!(A::ParMatrixN{N,M,O,T}, d::Parameters) where {N,M,O,T<:Complex} + Random.seed!(1234) + d[A] = rand(T, A.weight_shape...) ./ convert(real(T), sqrt(prod(A.weight_shape))) +end + +# TODO: Add rest of the functionality + +(A::ParParameterized{T,T,Linear,ParMatrixN{N,M,O,T},V})(x::X) where {N,M,O,T,V,X<:AbstractVector{T}} = vec(einsum(EinCode((A.op.weight_order,A.op.input_order),A.op.target_order),(A.params,reshape(x, A.op.input_shape)))) +# (A::ParParameterized{T,T,Linear,ParMatrixN{N,M,O,T},V})(x::X) where {N,M,O,T,V,X<:AbstractMatrix{T}} = A.params*x +# (A::ParParameterized{T,T,Linear,ParAdjoint{T,T,Parametric,ParMatrixN{N,M,O,T}},V})(x::X) where {N,M,O,T,V,X<:AbstractVector{T}} = A.params[A.op.op]'*x +# (A::ParParameterized{T,T,Linear,ParAdjoint{T,T,Parametric,ParMatrixN{N,M,O,T}},V})(x::X) where {N,M,O,T,V,X<:AbstractMatrix{T}} = A.params[A.op.op]'*x +# *(x::X, A::ParParameterized{T,T,Linear,ParMatrixN{N,M,O,T},V}) where {N,M,O,T,V,X<:AbstractVector{T}} = x*A.params +# *(x::X, A::ParParameterized{T,T,Linear,ParMatrixN{N,M,O,T},V}) where {N,M,O,T,V,X<:AbstractMatrix{T}} = x*A.params +# *(x::X, A::ParParameterized{T,T,Linear,ParAdjoint{T,T,Parametric,ParMatrixN{N,M,O,T}},V}) where {N,M,O,T,V,X<:AbstractVector{T}} = x*A.params[A.op.op]' +# *(x::X, A::ParParameterized{T,T,Linear,ParAdjoint{T,T,Parametric,ParMatrixN{N,M,O,T}},V}) where {N,M,O,T,V,X<:AbstractMatrix{T}} = x*A.params[A.op.op]' + +function to_Dict(A::ParMatrixN{N,M,O,T}) where {N,M,O,T} + rv = Dict{String, Any}( + "type" => "ParMatrixN", + "T" => string(T), + "ws" => A.weight_shape, + "wo" => A.weight_order, + "is" => A.input_shape, + "io" => A.input_order, + "to" => A.target_order, + "ts" => A.target_shape, + ) + if typeof(A.id) == String + rv["id"] = A.id + elseif typeof(A.id) == UUID + rv["id"] = "UUID:$(string(A.id))" + else + throw(ParException("I don't know how to encode id of type $(typeof(A.id))")) + end + rv +end + +function from_Dict(::Type{ParMatrixN}, d) + ts = d["T"] + if !haskey(Data_TYPES, ts) + throw(ParException("unknown data type `$ts`")) + end + dtype = Data_TYPES[ts] + mid = d["id"] + if startswith(mid, "UUID:") + mid = UUID(mid[6:end]) + end + ParMatrixN(dtype, d["ws"], d["wo"], d["is"], d["io"], d["to"], d["ts"], mid) +end \ No newline at end of file From 5e76a76bb971236d5538ed37d9188264e8756f28 Mon Sep 17 00:00:00 2001 From: turquoisedragon2926 Date: Sat, 23 Sep 2023 13:11:30 -0400 Subject: [PATCH 04/38] forward pass identity bug WIP --- Project.toml | 1 + docs/build/assets/documenter.js | 331 ++++++++++++++++++ docs/build/assets/search.js | 267 ++++++++++++++ docs/build/assets/themes/documenter-dark.css | 7 + docs/build/assets/themes/documenter-light.css | 9 + docs/build/assets/themeswap.js | 66 ++++ docs/build/assets/warner.js | 49 +++ docs/build/examples.html | 31 ++ docs/build/index.html | 3 + docs/build/search.html | 2 + docs/build/search_index.js | 3 + docs/make.jl | 20 ++ docs/src/examples.md | 50 +++ docs/src/index.md | 12 + src/ParCompose.jl | 6 + src/ParDiagonal.jl | 3 +- src/ParIdentity.jl | 2 +- src/ParKron.jl | 67 +++- src/ParMatrix.jl | 65 +++- src/ParOperator.jl | 8 +- src/ParRestriction.jl | 8 +- 21 files changed, 986 insertions(+), 24 deletions(-) create mode 100644 docs/build/assets/documenter.js create mode 100644 docs/build/assets/search.js create mode 100644 docs/build/assets/themes/documenter-dark.css create mode 100644 docs/build/assets/themes/documenter-light.css create mode 100644 docs/build/assets/themeswap.js create mode 100644 docs/build/assets/warner.js create mode 100644 docs/build/examples.html create mode 100644 docs/build/index.html create mode 100644 docs/build/search.html create mode 100644 docs/build/search_index.js create mode 100644 docs/make.jl create mode 100644 docs/src/examples.md create mode 100644 docs/src/index.md diff --git a/Project.toml b/Project.toml index fe102f1..258a0be 100644 --- a/Project.toml +++ b/Project.toml @@ -8,6 +8,7 @@ CUDA = "052768ef-5323-5732-b1bb-66c8b64840ba" ChainRulesCore = "d360d2e6-b24c-11e9-a2a3-2a2ae2dbcce4" Combinatorics = "861a8166-3701-5b0c-9a16-15d98fcdc6aa" DataStructures = "864edb3b-99cc-5e75-8d2d-829cb0a9cfe8" +Documenter = "e30172f5-a6a5-5a46-863b-614d45cd2de4" FFTW = "7a1cc6ca-52ef-59f5-83cd-3a7055c09341" GraphViz = "f526b714-d49f-11e8-06ff-31ed36ee7ee0" JSON = "682c06a0-de6a-54ab-a142-c8b1cf79cde6" diff --git a/docs/build/assets/documenter.js b/docs/build/assets/documenter.js new file mode 100644 index 0000000..6adfbbb --- /dev/null +++ b/docs/build/assets/documenter.js @@ -0,0 +1,331 @@ +// Generated by Documenter.jl +requirejs.config({ + paths: { + 'highlight-julia': 'https://cdnjs.cloudflare.com/ajax/libs/highlight.js/11.5.1/languages/julia.min', + 'headroom': 'https://cdnjs.cloudflare.com/ajax/libs/headroom/0.12.0/headroom.min', + 'jqueryui': 'https://cdnjs.cloudflare.com/ajax/libs/jqueryui/1.12.1/jquery-ui.min', + 'katex-auto-render': 'https://cdnjs.cloudflare.com/ajax/libs/KaTeX/0.13.24/contrib/auto-render.min', + 'jquery': 'https://cdnjs.cloudflare.com/ajax/libs/jquery/3.6.0/jquery.min', + 'headroom-jquery': 'https://cdnjs.cloudflare.com/ajax/libs/headroom/0.12.0/jQuery.headroom.min', + 'katex': 'https://cdnjs.cloudflare.com/ajax/libs/KaTeX/0.13.24/katex.min', + 'highlight': 'https://cdnjs.cloudflare.com/ajax/libs/highlight.js/11.5.1/highlight.min', + 'highlight-julia-repl': 'https://cdnjs.cloudflare.com/ajax/libs/highlight.js/11.5.1/languages/julia-repl.min', + }, + shim: { + "highlight-julia": { + "deps": [ + "highlight" + ] + }, + "katex-auto-render": { + "deps": [ + "katex" + ] + }, + "headroom-jquery": { + "deps": [ + "jquery", + "headroom" + ] + }, + "highlight-julia-repl": { + "deps": [ + "highlight" + ] + } +} +}); +//////////////////////////////////////////////////////////////////////////////// +require(['jquery', 'katex', 'katex-auto-render'], function($, katex, renderMathInElement) { +$(document).ready(function() { + renderMathInElement( + document.body, + { + "delimiters": [ + { + "left": "$", + "right": "$", + "display": false + }, + { + "left": "$$", + "right": "$$", + "display": true + }, + { + "left": "\\[", + "right": "\\]", + "display": true + } + ] +} + + ); +}) + +}) +//////////////////////////////////////////////////////////////////////////////// +require(['jquery', 'highlight', 'highlight-julia', 'highlight-julia-repl'], function($) { +$(document).ready(function() { + hljs.highlightAll(); +}) + +}) +//////////////////////////////////////////////////////////////////////////////// +require([], function() { +function addCopyButtonCallbacks() { + for (const el of document.getElementsByTagName("pre")) { + const button = document.createElement("button"); + button.classList.add("copy-button", "fas", "fa-copy"); + el.appendChild(button); + + const success = function () { + button.classList.add("success", "fa-check"); + button.classList.remove("fa-copy"); + }; + + const failure = function () { + button.classList.add("error", "fa-times"); + button.classList.remove("fa-copy"); + }; + + button.addEventListener("click", function () { + copyToClipboard(el.innerText).then(success, failure); + + setTimeout(function () { + button.classList.add("fa-copy"); + button.classList.remove("success", "fa-check", "fa-times"); + }, 5000); + }); + } +} + +function copyToClipboard(text) { + // clipboard API is only available in secure contexts + if (window.navigator && window.navigator.clipboard) { + return window.navigator.clipboard.writeText(text); + } else { + return new Promise(function (resolve, reject) { + try { + const el = document.createElement("textarea"); + el.textContent = text; + el.style.position = "fixed"; + el.style.opacity = 0; + document.body.appendChild(el); + el.select(); + document.execCommand("copy"); + + resolve(); + } catch (err) { + reject(err); + } finally { + document.body.removeChild(el); + } + }); + } +} + +if (document.readyState === "loading") { + document.addEventListener("DOMContentLoaded", addCopyButtonCallbacks); +} else { + addCopyButtonCallbacks(); +} + +}) +//////////////////////////////////////////////////////////////////////////////// +require(['jquery', 'headroom', 'headroom-jquery'], function($, Headroom) { + +// Manages the top navigation bar (hides it when the user starts scrolling down on the +// mobile). +window.Headroom = Headroom; // work around buggy module loading? +$(document).ready(function() { + $('#documenter .docs-navbar').headroom({ + "tolerance": {"up": 10, "down": 10}, + }); +}) + +}) +//////////////////////////////////////////////////////////////////////////////// +require(['jquery'], function($) { + +// Modal settings dialog +$(document).ready(function() { + var settings = $('#documenter-settings'); + $('#documenter-settings-button').click(function(){ + settings.toggleClass('is-active'); + }); + // Close the dialog if X is clicked + $('#documenter-settings button.delete').click(function(){ + settings.removeClass('is-active'); + }); + // Close dialog if ESC is pressed + $(document).keyup(function(e) { + if (e.keyCode == 27) settings.removeClass('is-active'); + }); +}); + +}) +//////////////////////////////////////////////////////////////////////////////// +require(['jquery'], function($) { + +// Manages the showing and hiding of the sidebar. +$(document).ready(function() { + var sidebar = $("#documenter > .docs-sidebar"); + var sidebar_button = $("#documenter-sidebar-button") + sidebar_button.click(function(ev) { + ev.preventDefault(); + sidebar.toggleClass('visible'); + if (sidebar.hasClass('visible')) { + // Makes sure that the current menu item is visible in the sidebar. + $("#documenter .docs-menu a.is-active").focus(); + } + }); + $("#documenter > .docs-main").bind('click', function(ev) { + if ($(ev.target).is(sidebar_button)) { + return; + } + if (sidebar.hasClass('visible')) { + sidebar.removeClass('visible'); + } + }); +}) + +// Resizes the package name / sitename in the sidebar if it is too wide. +// Inspired by: https://github.com/davatron5000/FitText.js +$(document).ready(function() { + e = $("#documenter .docs-autofit"); + function resize() { + var L = parseInt(e.css('max-width'), 10); + var L0 = e.width(); + if(L0 > L) { + var h0 = parseInt(e.css('font-size'), 10); + e.css('font-size', L * h0 / L0); + // TODO: make sure it survives resizes? + } + } + // call once and then register events + resize(); + $(window).resize(resize); + $(window).on('orientationchange', resize); +}); + +// Scroll the navigation bar to the currently selected menu item +$(document).ready(function() { + var sidebar = $("#documenter .docs-menu").get(0); + var active = $("#documenter .docs-menu .is-active").get(0); + if(typeof active !== 'undefined') { + sidebar.scrollTop = active.offsetTop - sidebar.offsetTop - 15; + } +}) + +}) +//////////////////////////////////////////////////////////////////////////////// +require(['jquery'], function($) { + +function set_theme(theme) { + var active = null; + var disabled = []; + for (var i = 0; i < document.styleSheets.length; i++) { + var ss = document.styleSheets[i]; + var themename = ss.ownerNode.getAttribute("data-theme-name"); + if(themename === null) continue; // ignore non-theme stylesheets + // Find the active theme + if(themename === theme) active = ss; + else disabled.push(ss); + } + if(active !== null) { + active.disabled = false; + if(active.ownerNode.getAttribute("data-theme-primary") === null) { + document.getElementsByTagName('html')[0].className = "theme--" + theme; + } else { + document.getElementsByTagName('html')[0].className = ""; + } + disabled.forEach(function(ss){ + ss.disabled = true; + }); + } + + // Store the theme in localStorage + if(typeof(window.localStorage) !== "undefined") { + window.localStorage.setItem("documenter-theme", theme); + } else { + console.error("Browser does not support window.localStorage"); + } +} + +// Theme picker setup +$(document).ready(function() { + // onchange callback + $('#documenter-themepicker').change(function themepick_callback(ev){ + var themename = $('#documenter-themepicker option:selected').attr('value'); + set_theme(themename); + }); + + // Make sure that the themepicker displays the correct theme when the theme is retrieved + // from localStorage + if(typeof(window.localStorage) !== "undefined") { + var theme = window.localStorage.getItem("documenter-theme"); + if(theme !== null) { + $('#documenter-themepicker option').each(function(i,e) { + e.selected = (e.value === theme); + }) + } else { + $('#documenter-themepicker option').each(function(i,e) { + e.selected = $("html").hasClass(`theme--${e.value}`); + }) + } + } +}) + +}) +//////////////////////////////////////////////////////////////////////////////// +require(['jquery'], function($) { + +// update the version selector with info from the siteinfo.js and ../versions.js files +$(document).ready(function() { + // If the version selector is disabled with DOCUMENTER_VERSION_SELECTOR_DISABLED in the + // siteinfo.js file, we just return immediately and not display the version selector. + if (typeof DOCUMENTER_VERSION_SELECTOR_DISABLED === 'boolean' && DOCUMENTER_VERSION_SELECTOR_DISABLED) { + return; + } + + var version_selector = $("#documenter .docs-version-selector"); + var version_selector_select = $("#documenter .docs-version-selector select"); + + version_selector_select.change(function(x) { + target_href = version_selector_select.children("option:selected").get(0).value; + window.location.href = target_href; + }); + + // add the current version to the selector based on siteinfo.js, but only if the selector is empty + if (typeof DOCUMENTER_CURRENT_VERSION !== 'undefined' && $('#version-selector > option').length == 0) { + var option = $(""); + version_selector_select.append(option); + } + + if (typeof DOC_VERSIONS !== 'undefined') { + var existing_versions = version_selector_select.children("option"); + var existing_versions_texts = existing_versions.map(function(i,x){return x.text}); + DOC_VERSIONS.forEach(function(each) { + var version_url = documenterBaseURL + "/../" + each; + var existing_id = $.inArray(each, existing_versions_texts); + // if not already in the version selector, add it as a new option, + // otherwise update the old option with the URL and enable it + if (existing_id == -1) { + var option = $(""); + version_selector_select.append(option); + } else { + var option = existing_versions[existing_id]; + option.value = version_url; + option.disabled = false; + } + }); + } + + // only show the version selector if the selector has been populated + if (version_selector_select.children("option").length > 0) { + version_selector.toggleClass("visible"); + } +}) + +}) diff --git a/docs/build/assets/search.js b/docs/build/assets/search.js new file mode 100644 index 0000000..c133f74 --- /dev/null +++ b/docs/build/assets/search.js @@ -0,0 +1,267 @@ +// Generated by Documenter.jl +requirejs.config({ + paths: { + 'lunr': 'https://cdnjs.cloudflare.com/ajax/libs/lunr.js/2.3.9/lunr.min', + 'lodash': 'https://cdnjs.cloudflare.com/ajax/libs/lodash.js/4.17.21/lodash.min', + 'jquery': 'https://cdnjs.cloudflare.com/ajax/libs/jquery/3.6.0/jquery.min', + } +}); +//////////////////////////////////////////////////////////////////////////////// +require(['jquery', 'lunr', 'lodash'], function($, lunr, _) { + +$(document).ready(function() { + // parseUri 1.2.2 + // (c) Steven Levithan + // MIT License + function parseUri (str) { + var o = parseUri.options, + m = o.parser[o.strictMode ? "strict" : "loose"].exec(str), + uri = {}, + i = 14; + + while (i--) uri[o.key[i]] = m[i] || ""; + + uri[o.q.name] = {}; + uri[o.key[12]].replace(o.q.parser, function ($0, $1, $2) { + if ($1) uri[o.q.name][$1] = $2; + }); + + return uri; + }; + parseUri.options = { + strictMode: false, + key: ["source","protocol","authority","userInfo","user","password","host","port","relative","path","directory","file","query","anchor"], + q: { + name: "queryKey", + parser: /(?:^|&)([^&=]*)=?([^&]*)/g + }, + parser: { + strict: /^(?:([^:\/?#]+):)?(?:\/\/((?:(([^:@]*)(?::([^:@]*))?)?@)?([^:\/?#]*)(?::(\d*))?))?((((?:[^?#\/]*\/)*)([^?#]*))(?:\?([^#]*))?(?:#(.*))?)/, + loose: /^(?:(?![^:@]+:[^:@\/]*@)([^:\/?#.]+):)?(?:\/\/)?((?:(([^:@]*)(?::([^:@]*))?)?@)?([^:\/?#]*)(?::(\d*))?)(((\/(?:[^?#](?![^?#\/]*\.[^?#\/.]+(?:[?#]|$)))*\/?)?([^?#\/]*))(?:\?([^#]*))?(?:#(.*))?)/ + } + }; + + $("#search-form").submit(function(e) { + e.preventDefault() + }) + + // list below is the lunr 2.1.3 list minus the intersect with names(Base) + // (all, any, get, in, is, only, which) and (do, else, for, let, where, while, with) + // ideally we'd just filter the original list but it's not available as a variable + lunr.stopWordFilter = lunr.generateStopWordFilter([ + 'a', + 'able', + 'about', + 'across', + 'after', + 'almost', + 'also', + 'am', + 'among', + 'an', + 'and', + 'are', + 'as', + 'at', + 'be', + 'because', + 'been', + 'but', + 'by', + 'can', + 'cannot', + 'could', + 'dear', + 'did', + 'does', + 'either', + 'ever', + 'every', + 'from', + 'got', + 'had', + 'has', + 'have', + 'he', + 'her', + 'hers', + 'him', + 'his', + 'how', + 'however', + 'i', + 'if', + 'into', + 'it', + 'its', + 'just', + 'least', + 'like', + 'likely', + 'may', + 'me', + 'might', + 'most', + 'must', + 'my', + 'neither', + 'no', + 'nor', + 'not', + 'of', + 'off', + 'often', + 'on', + 'or', + 'other', + 'our', + 'own', + 'rather', + 'said', + 'say', + 'says', + 'she', + 'should', + 'since', + 'so', + 'some', + 'than', + 'that', + 'the', + 'their', + 'them', + 'then', + 'there', + 'these', + 'they', + 'this', + 'tis', + 'to', + 'too', + 'twas', + 'us', + 'wants', + 'was', + 'we', + 'were', + 'what', + 'when', + 'who', + 'whom', + 'why', + 'will', + 'would', + 'yet', + 'you', + 'your' + ]) + + // add . as a separator, because otherwise "title": "Documenter.Anchors.add!" + // would not find anything if searching for "add!", only for the entire qualification + lunr.tokenizer.separator = /[\s\-\.]+/ + + // custom trimmer that doesn't strip @ and !, which are used in julia macro and function names + lunr.trimmer = function (token) { + return token.update(function (s) { + return s.replace(/^[^a-zA-Z0-9@!]+/, '').replace(/[^a-zA-Z0-9@!]+$/, '') + }) + } + + lunr.Pipeline.registerFunction(lunr.stopWordFilter, 'juliaStopWordFilter') + lunr.Pipeline.registerFunction(lunr.trimmer, 'juliaTrimmer') + + var index = lunr(function () { + this.ref('location') + this.field('title',{boost: 100}) + this.field('text') + documenterSearchIndex['docs'].forEach(function(e) { + this.add(e) + }, this) + }) + var store = {} + + documenterSearchIndex['docs'].forEach(function(e) { + store[e.location] = {title: e.title, category: e.category, page: e.page} + }) + + $(function(){ + searchresults = $('#documenter-search-results'); + searchinfo = $('#documenter-search-info'); + searchbox = $('#documenter-search-query'); + searchform = $('.docs-search'); + sidebar = $('.docs-sidebar'); + function update_search(querystring) { + tokens = lunr.tokenizer(querystring) + results = index.query(function (q) { + tokens.forEach(function (t) { + q.term(t.toString(), { + fields: ["title"], + boost: 100, + usePipeline: true, + editDistance: 0, + wildcard: lunr.Query.wildcard.NONE + }) + q.term(t.toString(), { + fields: ["title"], + boost: 10, + usePipeline: true, + editDistance: 2, + wildcard: lunr.Query.wildcard.NONE + }) + q.term(t.toString(), { + fields: ["text"], + boost: 1, + usePipeline: true, + editDistance: 0, + wildcard: lunr.Query.wildcard.NONE + }) + }) + }) + searchinfo.text("Number of results: " + results.length) + searchresults.empty() + results.forEach(function(result) { + data = store[result.ref] + link = $(''+data.title+'') + link.attr('href', documenterBaseURL+'/'+result.ref) + if (data.category != "page"){ + cat = $('('+data.category+', '+data.page+')') + } else { + cat = $('('+data.category+')') + } + li = $('
  • ').append(link).append(" ").append(cat) + searchresults.append(li) + }) + } + + function update_search_box() { + querystring = searchbox.val() + update_search(querystring) + } + + searchbox.keyup(_.debounce(update_search_box, 250)) + searchbox.change(update_search_box) + + // Disable enter-key form submission for the searchbox on the search page + // and just re-run search rather than refresh the whole page. + searchform.keypress( + function(event){ + if (event.which == '13') { + if (sidebar.hasClass('visible')) { + sidebar.removeClass('visible'); + } + update_search_box(); + event.preventDefault(); + } + } + ); + + search_query_uri = parseUri(window.location).queryKey["q"] + if(search_query_uri !== undefined) { + search_query = decodeURIComponent(search_query_uri.replace(/\+/g, '%20')) + searchbox.val(search_query) + } + update_search_box(); + }) +}) + +}) diff --git a/docs/build/assets/themes/documenter-dark.css b/docs/build/assets/themes/documenter-dark.css new file mode 100644 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html.theme--documenter-dark .button.is-white.is-inverted{background-color:#0a0a0a;border-color:transparent;box-shadow:none;color:#fff}html.theme--documenter-dark .button.is-white.is-loading::after{border-color:transparent transparent #0a0a0a #0a0a0a !important}html.theme--documenter-dark .button.is-white.is-outlined{background-color:transparent;border-color:#fff;color:#fff}html.theme--documenter-dark .button.is-white.is-outlined:hover,html.theme--documenter-dark .button.is-white.is-outlined.is-hovered,html.theme--documenter-dark .button.is-white.is-outlined:focus,html.theme--documenter-dark .button.is-white.is-outlined.is-focused{background-color:#fff;border-color:#fff;color:#0a0a0a}html.theme--documenter-dark .button.is-white.is-outlined.is-loading::after{border-color:transparent transparent #fff #fff !important}html.theme--documenter-dark .button.is-white.is-outlined.is-loading:hover::after,html.theme--documenter-dark .button.is-white.is-outlined.is-loading.is-hovered::after,html.theme--documenter-dark .button.is-white.is-outlined.is-loading:focus::after,html.theme--documenter-dark .button.is-white.is-outlined.is-loading.is-focused::after{border-color:transparent transparent #0a0a0a #0a0a0a !important}html.theme--documenter-dark .button.is-white.is-outlined[disabled],fieldset[disabled] html.theme--documenter-dark .button.is-white.is-outlined{background-color:transparent;border-color:#fff;box-shadow:none;color:#fff}html.theme--documenter-dark .button.is-white.is-inverted.is-outlined{background-color:transparent;border-color:#0a0a0a;color:#0a0a0a}html.theme--documenter-dark .button.is-white.is-inverted.is-outlined:hover,html.theme--documenter-dark .button.is-white.is-inverted.is-outlined.is-hovered,html.theme--documenter-dark .button.is-white.is-inverted.is-outlined:focus,html.theme--documenter-dark 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.button.is-black.is-inverted.is-hovered{background-color:#f2f2f2}html.theme--documenter-dark .button.is-black.is-inverted[disabled],fieldset[disabled] html.theme--documenter-dark .button.is-black.is-inverted{background-color:#fff;border-color:transparent;box-shadow:none;color:#0a0a0a}html.theme--documenter-dark .button.is-black.is-loading::after{border-color:transparent transparent #fff #fff !important}html.theme--documenter-dark .button.is-black.is-outlined{background-color:transparent;border-color:#0a0a0a;color:#0a0a0a}html.theme--documenter-dark .button.is-black.is-outlined:hover,html.theme--documenter-dark .button.is-black.is-outlined.is-hovered,html.theme--documenter-dark .button.is-black.is-outlined:focus,html.theme--documenter-dark .button.is-black.is-outlined.is-focused{background-color:#0a0a0a;border-color:#0a0a0a;color:#fff}html.theme--documenter-dark .button.is-black.is-outlined.is-loading::after{border-color:transparent transparent #0a0a0a #0a0a0a !important}html.theme--documenter-dark .button.is-black.is-outlined.is-loading:hover::after,html.theme--documenter-dark .button.is-black.is-outlined.is-loading.is-hovered::after,html.theme--documenter-dark .button.is-black.is-outlined.is-loading:focus::after,html.theme--documenter-dark .button.is-black.is-outlined.is-loading.is-focused::after{border-color:transparent transparent #fff #fff !important}html.theme--documenter-dark .button.is-black.is-outlined[disabled],fieldset[disabled] html.theme--documenter-dark .button.is-black.is-outlined{background-color:transparent;border-color:#0a0a0a;box-shadow:none;color:#0a0a0a}html.theme--documenter-dark .button.is-black.is-inverted.is-outlined{background-color:transparent;border-color:#fff;color:#fff}html.theme--documenter-dark .button.is-black.is-inverted.is-outlined:hover,html.theme--documenter-dark .button.is-black.is-inverted.is-outlined.is-hovered,html.theme--documenter-dark .button.is-black.is-inverted.is-outlined:focus,html.theme--documenter-dark .button.is-black.is-inverted.is-outlined.is-focused{background-color:#fff;color:#0a0a0a}html.theme--documenter-dark .button.is-black.is-inverted.is-outlined.is-loading:hover::after,html.theme--documenter-dark .button.is-black.is-inverted.is-outlined.is-loading.is-hovered::after,html.theme--documenter-dark .button.is-black.is-inverted.is-outlined.is-loading:focus::after,html.theme--documenter-dark .button.is-black.is-inverted.is-outlined.is-loading.is-focused::after{border-color:transparent transparent #0a0a0a #0a0a0a !important}html.theme--documenter-dark .button.is-black.is-inverted.is-outlined[disabled],fieldset[disabled] html.theme--documenter-dark .button.is-black.is-inverted.is-outlined{background-color:transparent;border-color:#fff;box-shadow:none;color:#fff}html.theme--documenter-dark .button.is-light{background-color:#ecf0f1;border-color:transparent;color:#282f2f}html.theme--documenter-dark .button.is-light:hover,html.theme--documenter-dark .button.is-light.is-hovered{background-color:#e5eaec;border-color:transparent;color:#282f2f}html.theme--documenter-dark .button.is-light:focus,html.theme--documenter-dark .button.is-light.is-focused{border-color:transparent;color:#282f2f}html.theme--documenter-dark .button.is-light:focus:not(:active),html.theme--documenter-dark .button.is-light.is-focused:not(:active){box-shadow:0 0 0 0.125em rgba(236,240,241,0.25)}html.theme--documenter-dark .button.is-light:active,html.theme--documenter-dark .button.is-light.is-active{background-color:#dde4e6;border-color:transparent;color:#282f2f}html.theme--documenter-dark .button.is-light[disabled],fieldset[disabled] html.theme--documenter-dark .button.is-light{background-color:#ecf0f1;border-color:transparent;box-shadow:none}html.theme--documenter-dark .button.is-light.is-inverted{background-color:#282f2f;color:#ecf0f1}html.theme--documenter-dark .button.is-light.is-inverted:hover,html.theme--documenter-dark .button.is-light.is-inverted.is-hovered{background-color:#1d2122}html.theme--documenter-dark .button.is-light.is-inverted[disabled],fieldset[disabled] html.theme--documenter-dark .button.is-light.is-inverted{background-color:#282f2f;border-color:transparent;box-shadow:none;color:#ecf0f1}html.theme--documenter-dark .button.is-light.is-loading::after{border-color:transparent transparent #282f2f #282f2f !important}html.theme--documenter-dark .button.is-light.is-outlined{background-color:transparent;border-color:#ecf0f1;color:#ecf0f1}html.theme--documenter-dark .button.is-light.is-outlined:hover,html.theme--documenter-dark .button.is-light.is-outlined.is-hovered,html.theme--documenter-dark .button.is-light.is-outlined:focus,html.theme--documenter-dark .button.is-light.is-outlined.is-focused{background-color:#ecf0f1;border-color:#ecf0f1;color:#282f2f}html.theme--documenter-dark .button.is-light.is-outlined.is-loading::after{border-color:transparent transparent #ecf0f1 #ecf0f1 !important}html.theme--documenter-dark .button.is-light.is-outlined.is-loading:hover::after,html.theme--documenter-dark .button.is-light.is-outlined.is-loading.is-hovered::after,html.theme--documenter-dark .button.is-light.is-outlined.is-loading:focus::after,html.theme--documenter-dark .button.is-light.is-outlined.is-loading.is-focused::after{border-color:transparent transparent #282f2f #282f2f !important}html.theme--documenter-dark .button.is-light.is-outlined[disabled],fieldset[disabled] html.theme--documenter-dark .button.is-light.is-outlined{background-color:transparent;border-color:#ecf0f1;box-shadow:none;color:#ecf0f1}html.theme--documenter-dark .button.is-light.is-inverted.is-outlined{background-color:transparent;border-color:#282f2f;color:#282f2f}html.theme--documenter-dark .button.is-light.is-inverted.is-outlined:hover,html.theme--documenter-dark .button.is-light.is-inverted.is-outlined.is-hovered,html.theme--documenter-dark .button.is-light.is-inverted.is-outlined:focus,html.theme--documenter-dark .button.is-light.is-inverted.is-outlined.is-focused{background-color:#282f2f;color:#ecf0f1}html.theme--documenter-dark .button.is-light.is-inverted.is-outlined.is-loading:hover::after,html.theme--documenter-dark .button.is-light.is-inverted.is-outlined.is-loading.is-hovered::after,html.theme--documenter-dark .button.is-light.is-inverted.is-outlined.is-loading:focus::after,html.theme--documenter-dark .button.is-light.is-inverted.is-outlined.is-loading.is-focused::after{border-color:transparent transparent #ecf0f1 #ecf0f1 !important}html.theme--documenter-dark .button.is-light.is-inverted.is-outlined[disabled],fieldset[disabled] html.theme--documenter-dark .button.is-light.is-inverted.is-outlined{background-color:transparent;border-color:#282f2f;box-shadow:none;color:#282f2f}html.theme--documenter-dark .button.is-dark,html.theme--documenter-dark .content kbd.button{background-color:#282f2f;border-color:transparent;color:#ecf0f1}html.theme--documenter-dark .button.is-dark:hover,html.theme--documenter-dark .content kbd.button:hover,html.theme--documenter-dark .button.is-dark.is-hovered,html.theme--documenter-dark .content kbd.button.is-hovered{background-color:#232829;border-color:transparent;color:#ecf0f1}html.theme--documenter-dark .button.is-dark:focus,html.theme--documenter-dark .content kbd.button:focus,html.theme--documenter-dark .button.is-dark.is-focused,html.theme--documenter-dark .content kbd.button.is-focused{border-color:transparent;color:#ecf0f1}html.theme--documenter-dark .button.is-dark:focus:not(:active),html.theme--documenter-dark .content kbd.button:focus:not(:active),html.theme--documenter-dark .button.is-dark.is-focused:not(:active),html.theme--documenter-dark .content kbd.button.is-focused:not(:active){box-shadow:0 0 0 0.125em rgba(40,47,47,0.25)}html.theme--documenter-dark .button.is-dark:active,html.theme--documenter-dark .content kbd.button:active,html.theme--documenter-dark .button.is-dark.is-active,html.theme--documenter-dark .content kbd.button.is-active{background-color:#1d2122;border-color:transparent;color:#ecf0f1}html.theme--documenter-dark .button.is-dark[disabled],html.theme--documenter-dark .content kbd.button[disabled],fieldset[disabled] html.theme--documenter-dark .button.is-dark,fieldset[disabled] html.theme--documenter-dark .content kbd.button{background-color:#282f2f;border-color:transparent;box-shadow:none}html.theme--documenter-dark .button.is-dark.is-inverted,html.theme--documenter-dark .content kbd.button.is-inverted{background-color:#ecf0f1;color:#282f2f}html.theme--documenter-dark .button.is-dark.is-inverted:hover,html.theme--documenter-dark .content kbd.button.is-inverted:hover,html.theme--documenter-dark .button.is-dark.is-inverted.is-hovered,html.theme--documenter-dark .content kbd.button.is-inverted.is-hovered{background-color:#dde4e6}html.theme--documenter-dark .button.is-dark.is-inverted[disabled],html.theme--documenter-dark .content kbd.button.is-inverted[disabled],fieldset[disabled] html.theme--documenter-dark .button.is-dark.is-inverted,fieldset[disabled] html.theme--documenter-dark .content kbd.button.is-inverted{background-color:#ecf0f1;border-color:transparent;box-shadow:none;color:#282f2f}html.theme--documenter-dark .button.is-dark.is-loading::after,html.theme--documenter-dark .content kbd.button.is-loading::after{border-color:transparent transparent #ecf0f1 #ecf0f1 !important}html.theme--documenter-dark .button.is-dark.is-outlined,html.theme--documenter-dark .content kbd.button.is-outlined{background-color:transparent;border-color:#282f2f;color:#282f2f}html.theme--documenter-dark .button.is-dark.is-outlined:hover,html.theme--documenter-dark .content kbd.button.is-outlined:hover,html.theme--documenter-dark .button.is-dark.is-outlined.is-hovered,html.theme--documenter-dark .content kbd.button.is-outlined.is-hovered,html.theme--documenter-dark .button.is-dark.is-outlined:focus,html.theme--documenter-dark .content kbd.button.is-outlined:focus,html.theme--documenter-dark .button.is-dark.is-outlined.is-focused,html.theme--documenter-dark .content kbd.button.is-outlined.is-focused{background-color:#282f2f;border-color:#282f2f;color:#ecf0f1}html.theme--documenter-dark .button.is-dark.is-outlined.is-loading::after,html.theme--documenter-dark .content kbd.button.is-outlined.is-loading::after{border-color:transparent transparent #282f2f #282f2f !important}html.theme--documenter-dark .button.is-dark.is-outlined.is-loading:hover::after,html.theme--documenter-dark .content kbd.button.is-outlined.is-loading:hover::after,html.theme--documenter-dark .button.is-dark.is-outlined.is-loading.is-hovered::after,html.theme--documenter-dark .content kbd.button.is-outlined.is-loading.is-hovered::after,html.theme--documenter-dark .button.is-dark.is-outlined.is-loading:focus::after,html.theme--documenter-dark .content kbd.button.is-outlined.is-loading:focus::after,html.theme--documenter-dark .button.is-dark.is-outlined.is-loading.is-focused::after,html.theme--documenter-dark .content kbd.button.is-outlined.is-loading.is-focused::after{border-color:transparent transparent #ecf0f1 #ecf0f1 !important}html.theme--documenter-dark .button.is-dark.is-outlined[disabled],html.theme--documenter-dark .content kbd.button.is-outlined[disabled],fieldset[disabled] html.theme--documenter-dark .button.is-dark.is-outlined,fieldset[disabled] html.theme--documenter-dark .content kbd.button.is-outlined{background-color:transparent;border-color:#282f2f;box-shadow:none;color:#282f2f}html.theme--documenter-dark .button.is-dark.is-inverted.is-outlined,html.theme--documenter-dark .content kbd.button.is-inverted.is-outlined{background-color:transparent;border-color:#ecf0f1;color:#ecf0f1}html.theme--documenter-dark .button.is-dark.is-inverted.is-outlined:hover,html.theme--documenter-dark .content kbd.button.is-inverted.is-outlined:hover,html.theme--documenter-dark .button.is-dark.is-inverted.is-outlined.is-hovered,html.theme--documenter-dark .content kbd.button.is-inverted.is-outlined.is-hovered,html.theme--documenter-dark .button.is-dark.is-inverted.is-outlined:focus,html.theme--documenter-dark .content kbd.button.is-inverted.is-outlined:focus,html.theme--documenter-dark .button.is-dark.is-inverted.is-outlined.is-focused,html.theme--documenter-dark .content kbd.button.is-inverted.is-outlined.is-focused{background-color:#ecf0f1;color:#282f2f}html.theme--documenter-dark .button.is-dark.is-inverted.is-outlined.is-loading:hover::after,html.theme--documenter-dark .content kbd.button.is-inverted.is-outlined.is-loading:hover::after,html.theme--documenter-dark .button.is-dark.is-inverted.is-outlined.is-loading.is-hovered::after,html.theme--documenter-dark .content kbd.button.is-inverted.is-outlined.is-loading.is-hovered::after,html.theme--documenter-dark .button.is-dark.is-inverted.is-outlined.is-loading:focus::after,html.theme--documenter-dark .content kbd.button.is-inverted.is-outlined.is-loading:focus::after,html.theme--documenter-dark .button.is-dark.is-inverted.is-outlined.is-loading.is-focused::after,html.theme--documenter-dark .content kbd.button.is-inverted.is-outlined.is-loading.is-focused::after{border-color:transparent transparent #282f2f #282f2f !important}html.theme--documenter-dark .button.is-dark.is-inverted.is-outlined[disabled],html.theme--documenter-dark .content kbd.button.is-inverted.is-outlined[disabled],fieldset[disabled] html.theme--documenter-dark .button.is-dark.is-inverted.is-outlined,fieldset[disabled] html.theme--documenter-dark .content kbd.button.is-inverted.is-outlined{background-color:transparent;border-color:#ecf0f1;box-shadow:none;color:#ecf0f1}html.theme--documenter-dark .button.is-primary,html.theme--documenter-dark .docstring>section>a.button.docs-sourcelink{background-color:#375a7f;border-color:transparent;color:#fff}html.theme--documenter-dark .button.is-primary:hover,html.theme--documenter-dark .docstring>section>a.button.docs-sourcelink:hover,html.theme--documenter-dark .button.is-primary.is-hovered,html.theme--documenter-dark .docstring>section>a.button.is-hovered.docs-sourcelink{background-color:#335476;border-color:transparent;color:#fff}html.theme--documenter-dark .button.is-primary:focus,html.theme--documenter-dark .docstring>section>a.button.docs-sourcelink:focus,html.theme--documenter-dark .button.is-primary.is-focused,html.theme--documenter-dark .docstring>section>a.button.is-focused.docs-sourcelink{border-color:transparent;color:#fff}html.theme--documenter-dark 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.button.is-danger.is-inverted{background-color:#fff;border-color:transparent;box-shadow:none;color:#9e1b0d}html.theme--documenter-dark .button.is-danger.is-loading::after{border-color:transparent transparent #fff #fff !important}html.theme--documenter-dark .button.is-danger.is-outlined{background-color:transparent;border-color:#9e1b0d;color:#9e1b0d}html.theme--documenter-dark .button.is-danger.is-outlined:hover,html.theme--documenter-dark .button.is-danger.is-outlined.is-hovered,html.theme--documenter-dark .button.is-danger.is-outlined:focus,html.theme--documenter-dark .button.is-danger.is-outlined.is-focused{background-color:#9e1b0d;border-color:#9e1b0d;color:#fff}html.theme--documenter-dark .button.is-danger.is-outlined.is-loading::after{border-color:transparent transparent #9e1b0d #9e1b0d !important}html.theme--documenter-dark .button.is-danger.is-outlined.is-loading:hover::after,html.theme--documenter-dark .button.is-danger.is-outlined.is-loading.is-hovered::after,html.theme--documenter-dark .button.is-danger.is-outlined.is-loading:focus::after,html.theme--documenter-dark .button.is-danger.is-outlined.is-loading.is-focused::after{border-color:transparent transparent #fff #fff !important}html.theme--documenter-dark .button.is-danger.is-outlined[disabled],fieldset[disabled] html.theme--documenter-dark .button.is-danger.is-outlined{background-color:transparent;border-color:#9e1b0d;box-shadow:none;color:#9e1b0d}html.theme--documenter-dark .button.is-danger.is-inverted.is-outlined{background-color:transparent;border-color:#fff;color:#fff}html.theme--documenter-dark .button.is-danger.is-inverted.is-outlined:hover,html.theme--documenter-dark .button.is-danger.is-inverted.is-outlined.is-hovered,html.theme--documenter-dark .button.is-danger.is-inverted.is-outlined:focus,html.theme--documenter-dark .button.is-danger.is-inverted.is-outlined.is-focused{background-color:#fff;color:#9e1b0d}html.theme--documenter-dark .button.is-danger.is-inverted.is-outlined.is-loading:hover::after,html.theme--documenter-dark .button.is-danger.is-inverted.is-outlined.is-loading.is-hovered::after,html.theme--documenter-dark .button.is-danger.is-inverted.is-outlined.is-loading:focus::after,html.theme--documenter-dark .button.is-danger.is-inverted.is-outlined.is-loading.is-focused::after{border-color:transparent transparent #9e1b0d #9e1b0d !important}html.theme--documenter-dark .button.is-danger.is-inverted.is-outlined[disabled],fieldset[disabled] html.theme--documenter-dark .button.is-danger.is-inverted.is-outlined{background-color:transparent;border-color:#fff;box-shadow:none;color:#fff}html.theme--documenter-dark .button.is-small,html.theme--documenter-dark #documenter .docs-sidebar form.docs-search>input.button{border-radius:3px;font-size:.85em}html.theme--documenter-dark .button.is-normal{font-size:15px}html.theme--documenter-dark .button.is-medium{font-size:1.25rem}html.theme--documenter-dark .button.is-large{font-size:1.5rem}html.theme--documenter-dark .button[disabled],fieldset[disabled] html.theme--documenter-dark .button{background-color:#8c9b9d;border-color:#dbdee0;box-shadow:none;opacity:.5}html.theme--documenter-dark .button.is-fullwidth{display:flex;width:100%}html.theme--documenter-dark .button.is-loading{color:transparent !important;pointer-events:none}html.theme--documenter-dark .button.is-loading::after{position:absolute;left:calc(50% - (1em / 2));top:calc(50% - (1em / 2));position:absolute !important}html.theme--documenter-dark .button.is-static{background-color:#282f2f;border-color:#5e6d6f;color:#dbdee0;box-shadow:none;pointer-events:none}html.theme--documenter-dark .button.is-rounded,html.theme--documenter-dark #documenter .docs-sidebar form.docs-search>input.button{border-radius:290486px;padding-left:1em;padding-right:1em}html.theme--documenter-dark .buttons{align-items:center;display:flex;flex-wrap:wrap;justify-content:flex-start}html.theme--documenter-dark .buttons .button{margin-bottom:0.5rem}html.theme--documenter-dark .buttons .button:not(:last-child):not(.is-fullwidth){margin-right:0.5rem}html.theme--documenter-dark .buttons:last-child{margin-bottom:-0.5rem}html.theme--documenter-dark .buttons:not(:last-child){margin-bottom:1rem}html.theme--documenter-dark .buttons.are-small .button:not(.is-normal):not(.is-medium):not(.is-large){border-radius:3px;font-size:.85em}html.theme--documenter-dark .buttons.are-medium .button:not(.is-small):not(.is-normal):not(.is-large){font-size:1.25rem}html.theme--documenter-dark .buttons.are-large .button:not(.is-small):not(.is-normal):not(.is-medium){font-size:1.5rem}html.theme--documenter-dark .buttons.has-addons .button:not(:first-child){border-bottom-left-radius:0;border-top-left-radius:0}html.theme--documenter-dark .buttons.has-addons .button:not(:last-child){border-bottom-right-radius:0;border-top-right-radius:0;margin-right:-1px}html.theme--documenter-dark .buttons.has-addons .button:last-child{margin-right:0}html.theme--documenter-dark .buttons.has-addons .button:hover,html.theme--documenter-dark .buttons.has-addons .button.is-hovered{z-index:2}html.theme--documenter-dark .buttons.has-addons .button:focus,html.theme--documenter-dark .buttons.has-addons .button.is-focused,html.theme--documenter-dark .buttons.has-addons .button:active,html.theme--documenter-dark .buttons.has-addons .button.is-active,html.theme--documenter-dark .buttons.has-addons .button.is-selected{z-index:3}html.theme--documenter-dark .buttons.has-addons .button:focus:hover,html.theme--documenter-dark .buttons.has-addons .button.is-focused:hover,html.theme--documenter-dark .buttons.has-addons .button:active:hover,html.theme--documenter-dark .buttons.has-addons .button.is-active:hover,html.theme--documenter-dark .buttons.has-addons .button.is-selected:hover{z-index:4}html.theme--documenter-dark .buttons.has-addons .button.is-expanded{flex-grow:1;flex-shrink:1}html.theme--documenter-dark .buttons.is-centered{justify-content:center}html.theme--documenter-dark .buttons.is-centered:not(.has-addons) .button:not(.is-fullwidth){margin-left:0.25rem;margin-right:0.25rem}html.theme--documenter-dark .buttons.is-right{justify-content:flex-end}html.theme--documenter-dark .buttons.is-right:not(.has-addons) .button:not(.is-fullwidth){margin-left:0.25rem;margin-right:0.25rem}html.theme--documenter-dark .container{flex-grow:1;margin:0 auto;position:relative;width:auto}@media screen and (min-width: 1056px){html.theme--documenter-dark .container{max-width:992px}html.theme--documenter-dark .container.is-fluid{margin-left:32px;margin-right:32px;max-width:none}}@media screen and (max-width: 1215px){html.theme--documenter-dark .container.is-widescreen{max-width:1152px}}@media screen and (max-width: 1407px){html.theme--documenter-dark .container.is-fullhd{max-width:1344px}}@media screen and (min-width: 1216px){html.theme--documenter-dark .container{max-width:1152px}}@media screen and (min-width: 1408px){html.theme--documenter-dark .container{max-width:1344px}}html.theme--documenter-dark .content li+li{margin-top:0.25em}html.theme--documenter-dark .content p:not(:last-child),html.theme--documenter-dark .content dl:not(:last-child),html.theme--documenter-dark .content ol:not(:last-child),html.theme--documenter-dark .content ul:not(:last-child),html.theme--documenter-dark .content blockquote:not(:last-child),html.theme--documenter-dark .content pre:not(:last-child),html.theme--documenter-dark .content table:not(:last-child){margin-bottom:1em}html.theme--documenter-dark .content h1,html.theme--documenter-dark .content h2,html.theme--documenter-dark .content h3,html.theme--documenter-dark .content h4,html.theme--documenter-dark .content h5,html.theme--documenter-dark .content h6{color:#f2f2f2;font-weight:600;line-height:1.125}html.theme--documenter-dark .content h1{font-size:2em;margin-bottom:0.5em}html.theme--documenter-dark .content h1:not(:first-child){margin-top:1em}html.theme--documenter-dark .content h2{font-size:1.75em;margin-bottom:0.5714em}html.theme--documenter-dark .content h2:not(:first-child){margin-top:1.1428em}html.theme--documenter-dark .content h3{font-size:1.5em;margin-bottom:0.6666em}html.theme--documenter-dark .content h3:not(:first-child){margin-top:1.3333em}html.theme--documenter-dark .content h4{font-size:1.25em;margin-bottom:0.8em}html.theme--documenter-dark .content h5{font-size:1.125em;margin-bottom:0.8888em}html.theme--documenter-dark .content h6{font-size:1em;margin-bottom:1em}html.theme--documenter-dark .content blockquote{background-color:#282f2f;border-left:5px solid #5e6d6f;padding:1.25em 1.5em}html.theme--documenter-dark .content ol{list-style-position:outside;margin-left:2em;margin-top:1em}html.theme--documenter-dark .content ol:not([type]){list-style-type:decimal}html.theme--documenter-dark .content ol.is-lower-alpha:not([type]){list-style-type:lower-alpha}html.theme--documenter-dark .content ol.is-lower-roman:not([type]){list-style-type:lower-roman}html.theme--documenter-dark .content ol.is-upper-alpha:not([type]){list-style-type:upper-alpha}html.theme--documenter-dark .content ol.is-upper-roman:not([type]){list-style-type:upper-roman}html.theme--documenter-dark .content ul{list-style:disc outside;margin-left:2em;margin-top:1em}html.theme--documenter-dark .content ul ul{list-style-type:circle;margin-top:0.5em}html.theme--documenter-dark .content ul ul ul{list-style-type:square}html.theme--documenter-dark .content dd{margin-left:2em}html.theme--documenter-dark .content figure{margin-left:2em;margin-right:2em;text-align:center}html.theme--documenter-dark .content figure:not(:first-child){margin-top:2em}html.theme--documenter-dark .content figure:not(:last-child){margin-bottom:2em}html.theme--documenter-dark .content figure img{display:inline-block}html.theme--documenter-dark .content figure figcaption{font-style:italic}html.theme--documenter-dark .content pre{-webkit-overflow-scrolling:touch;overflow-x:auto;padding:0;white-space:pre;word-wrap:normal}html.theme--documenter-dark .content sup,html.theme--documenter-dark .content sub{font-size:75%}html.theme--documenter-dark .content table{width:100%}html.theme--documenter-dark .content table td,html.theme--documenter-dark .content table th{border:1px solid #5e6d6f;border-width:0 0 1px;padding:0.5em 0.75em;vertical-align:top}html.theme--documenter-dark .content table th{color:#f2f2f2}html.theme--documenter-dark .content table th:not([align]){text-align:left}html.theme--documenter-dark .content table thead td,html.theme--documenter-dark .content table thead th{border-width:0 0 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.image.is-square,html.theme--documenter-dark #documenter .docs-sidebar .docs-logo>img.is-square,html.theme--documenter-dark .image.is-1by1,html.theme--documenter-dark #documenter .docs-sidebar .docs-logo>img.is-1by1{padding-top:100%}html.theme--documenter-dark .image.is-5by4,html.theme--documenter-dark #documenter .docs-sidebar .docs-logo>img.is-5by4{padding-top:80%}html.theme--documenter-dark .image.is-4by3,html.theme--documenter-dark #documenter .docs-sidebar .docs-logo>img.is-4by3{padding-top:75%}html.theme--documenter-dark .image.is-3by2,html.theme--documenter-dark #documenter .docs-sidebar .docs-logo>img.is-3by2{padding-top:66.6666%}html.theme--documenter-dark .image.is-5by3,html.theme--documenter-dark #documenter .docs-sidebar .docs-logo>img.is-5by3{padding-top:60%}html.theme--documenter-dark .image.is-16by9,html.theme--documenter-dark #documenter .docs-sidebar .docs-logo>img.is-16by9{padding-top:56.25%}html.theme--documenter-dark .image.is-2by1,html.theme--documenter-dark #documenter .docs-sidebar .docs-logo>img.is-2by1{padding-top:50%}html.theme--documenter-dark .image.is-3by1,html.theme--documenter-dark #documenter .docs-sidebar .docs-logo>img.is-3by1{padding-top:33.3333%}html.theme--documenter-dark .image.is-4by5,html.theme--documenter-dark #documenter .docs-sidebar .docs-logo>img.is-4by5{padding-top:125%}html.theme--documenter-dark .image.is-3by4,html.theme--documenter-dark #documenter .docs-sidebar .docs-logo>img.is-3by4{padding-top:133.3333%}html.theme--documenter-dark .image.is-2by3,html.theme--documenter-dark #documenter .docs-sidebar .docs-logo>img.is-2by3{padding-top:150%}html.theme--documenter-dark .image.is-3by5,html.theme--documenter-dark #documenter .docs-sidebar .docs-logo>img.is-3by5{padding-top:166.6666%}html.theme--documenter-dark .image.is-9by16,html.theme--documenter-dark #documenter .docs-sidebar .docs-logo>img.is-9by16{padding-top:177.7777%}html.theme--documenter-dark .image.is-1by2,html.theme--documenter-dark #documenter 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Gets put into the tag.. +function set_theme_from_local_storage() { + // Intialize the theme to null, which means default + var theme = null; + // If the browser supports the localstorage and is not disabled then try to get the + // documenter theme + if(window.localStorage != null) { + // Get the user-picked theme from localStorage. May be `null`, which means the default + // theme. + theme = window.localStorage.getItem("documenter-theme"); + } + // Check if the browser supports user color preference + var darkPreference = false; + // Check if the users preference is for dark color scheme + if(window.matchMedia('(prefers-color-scheme: dark)').matches === true) { + darkPreference = true; + } + // Initialize a few variables for the loop: + // + // - active: will contain the index of the theme that should be active. Note that there + // is no guarantee that localStorage contains sane values. If `active` stays `null` + // we either could not find the theme or it is the default (primary) theme anyway. + // Either way, we then need to stick to the primary theme. + // + // - disabled: style sheets that should be disabled (i.e. all the theme style sheets + // that are not the currently active theme) + var active = null; var disabled = []; var darkTheme = null; + for (var i = 0; i < document.styleSheets.length; i++) { + var ss = document.styleSheets[i]; + // The tag of each style sheet is expected to have a data-theme-name attribute + // which must contain the name of the theme. The names in localStorage much match this. + var themename = ss.ownerNode.getAttribute("data-theme-name"); + // attribute not set => non-theme stylesheet => ignore + if(themename === null) continue; + // To distinguish the default (primary) theme, it needs to have the data-theme-primary + // attribute set. + var isprimary = (ss.ownerNode.getAttribute("data-theme-primary") !== null); + // Check if the theme is primary dark theme + var isDarkTheme = (ss.ownerNode.getAttribute("data-theme-primary-dark") !== null); + // If ss is for dark theme then set the value of darkTheme to the name of the theme + if(isDarkTheme) darkTheme = themename; + // If we find a matching theme (and it's not the default), we'll set active to non-null + if(themename === theme) active = i; + // Store the style sheets of inactive themes so that we could disable them + if(themename !== theme) disabled.push(ss); + } + if(active !== null) { + // If we did find an active theme, we'll (1) add the theme--$(theme) class to + document.getElementsByTagName('html')[0].className = "theme--" + theme; + // and (2) disable all the other theme stylesheets + disabled.forEach(function(ss){ + ss.disabled = true; + }); + } + else if(darkTheme !== null && darkPreference === true) { + // If we did find an active theme, we'll (1) add the theme--$(theme) class to + document.getElementsByTagName('html')[0].className = "theme--" + darkTheme; + // and (2) disable all the other theme stylesheets + disabled.forEach(function(ss){ + if (ss.ownerNode.getAttribute("data-theme-name") !== darkTheme) { + ss.disabled = true; + } + }); + } +} +set_theme_from_local_storage(); diff --git a/docs/build/assets/warner.js b/docs/build/assets/warner.js new file mode 100644 index 0000000..5531c88 --- /dev/null +++ b/docs/build/assets/warner.js @@ -0,0 +1,49 @@ +function maybeAddWarning () { + // DOCUMENTER_NEWEST is defined in versions.js, DOCUMENTER_CURRENT_VERSION and DOCUMENTER_STABLE + // in siteinfo.js. + // If either of these are undefined something went horribly wrong, so we abort. + if ( + window.DOCUMENTER_NEWEST === undefined || + window.DOCUMENTER_CURRENT_VERSION === undefined || + window.DOCUMENTER_STABLE === undefined + ) { + return + }; + + // Current version is not a version number, so we can't tell if it's the newest version. Abort. + if (!/v(\d+\.)*\d+/.test(window.DOCUMENTER_CURRENT_VERSION)) { + return + }; + + // Current version is newest version, so no need to add a warning. + if (window.DOCUMENTER_NEWEST === window.DOCUMENTER_CURRENT_VERSION) { + return + }; + + // Add a noindex meta tag (unless one exists) so that search engines don't index this version of the docs. + if (document.body.querySelector('meta[name="robots"]') === null) { + const meta = document.createElement('meta'); + meta.name = 'robots'; + meta.content = 'noindex'; + + document.getElementsByTagName('head')[0].appendChild(meta); + }; + + const div = document.createElement('div'); + div.classList.add('outdated-warning-overlay'); + const closer = document.createElement('button'); + closer.classList.add('outdated-warning-closer', 'delete'); + closer.addEventListener('click', function () { + document.body.removeChild(div); + }); + const href = window.documenterBaseURL + '/../' + window.DOCUMENTER_STABLE; + div.innerHTML = 'This documentation is not for the latest stable release, but for either the development version or an older release.
    Click here to go to the documentation for the latest stable release.'; + div.appendChild(closer); + document.body.appendChild(div); +}; + +if (document.readyState === 'loading') { + document.addEventListener('DOMContentLoaded', maybeAddWarning); +} else { + maybeAddWarning(); +}; diff --git a/docs/build/examples.html b/docs/build/examples.html new file mode 100644 index 0000000..c025083 --- /dev/null +++ b/docs/build/examples.html @@ -0,0 +1,31 @@ + +Examples · ParametricOperators.jl
    Edit on GitHub

    Serial Examples

    Parametric Linear Operator:

    using ParametricOperators
+
+A = ParMatrix(Float64, 4, 4)
+
+x = rand(4)
+θ = init(A)
+
+y = A(θ) * x
+x = A'(θ) * y

    Distributed Examples

    Parametric Linear Operator

    using ParametricOperators
+using MPI
+
+MPI.Init()
+
+comm = MPI.COMM_WORLD
+rank = MPI.Comm_rank(comm)
+root = 0
+
+x = nothing
+if rank == root
+    x = rand(4)
+end
+x = MPI.bcast(x, root, comm)
+
+A = ParMatrix(Float64, 4, 4)
+A = distribute(A, [1, 2])
+
+θ = init(A)
+y = A(θ) * x
+
+MPI.Finalize()

    Running on 2 workers

    mpiexecjl --project=./path/to/your/project -n 2 julia test_file.jl
    diff --git a/docs/build/index.html b/docs/build/index.html new file mode 100644 index 0000000..9e2f66c --- /dev/null +++ b/docs/build/index.html @@ -0,0 +1,3 @@ + +Home · ParametricOperators.jl
    Edit on GitHub

    ParametricOperators.jl

    Scalable and distributed matrix-free abstractions for machine learning and scientific computing

    Installation

    Install your package with the following Julia command:

    using Pkg
+Pkg.add("ParametricOperators")
    diff --git a/docs/build/search.html b/docs/build/search.html new file mode 100644 index 0000000..5213582 --- /dev/null +++ b/docs/build/search.html @@ -0,0 +1,2 @@ + +Search · ParametricOperators.jl

    Loading search...

      diff --git a/docs/build/search_index.js b/docs/build/search_index.js new file mode 100644 index 0000000..1eefde4 --- /dev/null +++ b/docs/build/search_index.js @@ -0,0 +1,3 @@ +var documenterSearchIndex = {"docs": +[{"location":"examples.html#Serial-Examples","page":"Examples","title":"Serial Examples","text":"","category":"section"},{"location":"examples.html#Parametric-Linear-Operator:","page":"Examples","title":"Parametric Linear Operator:","text":"","category":"section"},{"location":"examples.html","page":"Examples","title":"Examples","text":"using ParametricOperators\n\nA = ParMatrix(Float64, 4, 4)\n\nx = rand(4)\nθ = init(A)\n\ny = A(θ) * x\nx = A'(θ) * y","category":"page"},{"location":"examples.html#Distributed-Examples","page":"Examples","title":"Distributed Examples","text":"","category":"section"},{"location":"examples.html#Parametric-Linear-Operator","page":"Examples","title":"Parametric Linear Operator","text":"","category":"section"},{"location":"examples.html","page":"Examples","title":"Examples","text":"using ParametricOperators\nusing MPI\n\nMPI.Init()\n\ncomm = MPI.COMM_WORLD\nrank = MPI.Comm_rank(comm)\nroot = 0\n\nx = nothing\nif rank == root\n x = rand(4)\nend\nx = MPI.bcast(x, root, comm)\n\nA = ParMatrix(Float64, 4, 4)\nA = distribute(A, [1, 2])\n\nθ = init(A)\ny = A(θ) * x\n\nMPI.Finalize()","category":"page"},{"location":"examples.html#Running-on-2-workers","page":"Examples","title":"Running on 2 workers","text":"","category":"section"},{"location":"examples.html","page":"Examples","title":"Examples","text":"mpiexecjl --project=./path/to/your/project -n 2 julia test_file.jl","category":"page"},{"location":"index.html#ParametricOperators.jl","page":"Home","title":"ParametricOperators.jl","text":"","category":"section"},{"location":"index.html","page":"Home","title":"Home","text":"Scalable and distributed matrix-free abstractions for machine learning and scientific computing","category":"page"},{"location":"index.html#Installation","page":"Home","title":"Installation","text":"","category":"section"},{"location":"index.html","page":"Home","title":"Home","text":"Install your package with the following Julia command:","category":"page"},{"location":"index.html","page":"Home","title":"Home","text":"using Pkg\nPkg.add(\"ParametricOperators\")","category":"page"}] +} diff --git a/docs/make.jl b/docs/make.jl new file mode 100644 index 0000000..4d1642c --- /dev/null +++ b/docs/make.jl @@ -0,0 +1,20 @@ +using Pkg +Pkg.activate("../") + +using ParametricOperators +using Documenter + +push!(LOAD_PATH, "../src") +makedocs( + sitename="ParametricOperators.jl", + modules=[ParametricOperators], + pages=[ + "Home" => "index.md", + "Examples" => "examples.md" + ], + format=Documenter.HTML( + prettyurls=get(ENV, "CI", nothing) == "true" + )) +deploydocs(; + repo="github.com/slimgroup/ParametricOperators.jl" +) diff --git a/docs/src/examples.md b/docs/src/examples.md new file mode 100644 index 0000000..fe1a953 --- /dev/null +++ b/docs/src/examples.md @@ -0,0 +1,50 @@ +## Serial Examples + +### Parametric Linear Operator: + +``` +using ParametricOperators + +A = ParMatrix(Float64, 4, 4) + +x = rand(4) +θ = init(A) + +y = A(θ) * x +x = A'(θ) * y +``` + +## Distributed Examples + +### Parametric Linear Operator + +``` +using ParametricOperators +using MPI + +MPI.Init() + +comm = MPI.COMM_WORLD +rank = MPI.Comm_rank(comm) +root = 0 + +x = nothing +if rank == root + x = rand(4) +end +x = MPI.bcast(x, root, comm) + +A = ParMatrix(Float64, 4, 4) +A = distribute(A, [1, 2]) + +θ = init(A) +y = A(θ) * x + +MPI.Finalize() +``` + +#### Running on 2 workers + +``` +mpiexecjl --project=./path/to/your/project -n 2 julia test_file.jl +``` \ No newline at end of file diff --git a/docs/src/index.md b/docs/src/index.md new file mode 100644 index 0000000..399ab2f --- /dev/null +++ b/docs/src/index.md @@ -0,0 +1,12 @@ +# ParametricOperators.jl + +Scalable and distributed matrix-free abstractions for machine learning and scientific computing + +## Installation + +Install your package with the following Julia command: + +```julia +using Pkg +Pkg.add("ParametricOperators") +``` \ No newline at end of file diff --git a/src/ParCompose.jl b/src/ParCompose.jl index 17aae66..ed3365b 100644 --- a/src/ParCompose.jl +++ b/src/ParCompose.jl @@ -43,7 +43,13 @@ adjoint(A::ParCompose{D,R,Linear,P,F,N}) where {D,R,P,F,N} = ParCompose(reverse( function (A::ParCompose{D,R,L,<:Applicable,F,N})(x::X) where {D,R,L,F,N,X<:AbstractVector{D}} for i in 1:N + # if state == 0 + # println("Pre composition at op ", i, x) + # end x = A.ops[N-i+1](x) + # if state == 0 + # println("Post composition at op ", i, x) + # end end return x end diff --git a/src/ParDiagonal.jl b/src/ParDiagonal.jl index 727ed44..346b653 100644 --- a/src/ParDiagonal.jl +++ b/src/ParDiagonal.jl @@ -15,7 +15,8 @@ Range(A::ParDiagonal) = A.n complexity(A::ParDiagonal{T}) where {T} = elementwise_multiplication_cost(T)*A.n function init!(A::ParDiagonal{T}, d::Parameters) where {T} - d[A] = rand(T, A.n) + d[A] = zeros(T, A.n) + # d[A] = rand(T, A.n) end (A::ParParameterized{T,T,Linear,ParDiagonal{T},V})(x::X) where {T,V,X<:AbstractVector{T}} = A.params.*x diff --git a/src/ParIdentity.jl b/src/ParIdentity.jl index d93f99d..23107a6 100644 --- a/src/ParIdentity.jl +++ b/src/ParIdentity.jl @@ -32,4 +32,4 @@ function from_Dict(::Type{ParIdentity}, d) ParIdentity(dtype, d["n"]) end -kron(A::ParIdentity{T}, B::ParIdentity{T}) where {T} = ParIdentity(T,B.n*A.n) +# kron(A::ParIdentity{T}, B::ParIdentity{T}) where {T} = ParIdentity(T,B.n*A.n) diff --git a/src/ParKron.jl b/src/ParKron.jl index 9ab69eb..c6abb92 100644 --- a/src/ParKron.jl +++ b/src/ParKron.jl @@ -14,6 +14,16 @@ Kronecker product operator. struct ParKron{D,R,P,F,N} <: ParSeparableOperator{D,R,P,Internal} ops::F order::Vector{Int} + + function ParKron(ops::Vector,order::Vector) + + D = DDT(ops[order[1]]) + R = RDT(ops[order[end]]) + P = foldl(promote_parametricity, map(parametricity, ops)) + + return new{D,R,P,typeof(ops),length(ops)}(ops, order) + end + function ParKron(ops...) # Collect operators into a vector @@ -188,10 +198,11 @@ function transforms(A::ParKron) end function (A::ParKron{D,R,<:Applicable,F,N})(x::X) where {D,R,F,N,X<:AbstractMatrix{D}} - - # Reshape to input shape + # println("Here") + # Reshape to inpu t shape b = size(x)[2] s = reverse(collect(map(Domain, A.ops))) + # println(s) x = reshape(x, s..., b) # Apply operators in order, permuting to enforce leading dim of x to @@ -237,47 +248,78 @@ function latex_string(A::ParKron{D,R,P,F,N}) where {D,R,P,F,N} end """ -Distributes Kronecker product over the given communicator +Distributes Kronecker product over the given dimensions """ -function distribute(A::ParKron, dims_in, dims_out=dims_in, parent_comm=MPI.COMM_WORLD) - +function distribute(A::ParKron, dims_in::Vector{Int64}, dims_out::Vector{Int64}=dims_in, parent_comm=MPI.COMM_WORLD) comm_in = MPI.Cart_create(parent_comm, dims_in) comm_out = MPI.Cart_create(parent_comm, dims_out) + return distribute(A, comm_in, comm_out, parent_comm) +end + +""" +Distributes Kronecker product over the given communicator +""" +function distribute(A::ParKron, comm_in::MPI.Comm, comm_out::MPI.Comm, parent_comm=MPI.COMM_WORLD) + dims, _, _ = MPI.Cart_get(comm_in) N = length(dims) @assert length(A.ops) == N - size_curr = collect(map(Domain, reverse(A.ops))) + size_curr = collect(map(Domain, reverse(A.ops))) # [30,20] comm_prev = comm_in + dims_prev = dims ops = [] + # if MPI.Comm_rank(comm_in) == 0 + # println(size_curr, A.order) + # end + for i in 1:N # Get operator i - o = A.order[i] - d = N-o+1 - Ai = A.ops[o] + o = A.order[i] # o is the index where the ith operate to execute is stored at + d = N-o+1 # this is just i, not sure why its here ?? (maybe bc parKron rearranger A.order, so we need this) + Ai = A.ops[o] # The i th operator # Compute size of dims for communicator dims_i = copy(dims) dims_i[d] = 1 dims_i[mod1(d+1, N)] *= dims[d] + # if MPI.Comm_rank(comm_in) == 0 # Move the distribution for i th operator to the i+1 th operator + # println(d) + # println(dims_i) + # end comm_i = MPI.Cart_create(parent_comm, dims_i) coords_i = MPI.Cart_coords(comm_i) + # if MPI.Comm_rank(comm_in) == 1 # Move the distribution for i th operator to the i+1 th operator + # println(coords_i) + # end + + MPI.Comm_rank(comm_in) == 0 && println("Iteration: ", i, ". d: ", d, " ", dims_prev, " ", dims_i, " ", typeof(Ai)) + + # # Skip this iteration if it does nothing: isequal(dims_prev, dims_i) && ?? + # (typeof(Ai) <: ParIdentity) && (MPI.Comm_rank(comm_in) == 0) && println("Skipping loop at Iter: ", i) + # (typeof(Ai) <: ParIdentity) && continue - # Create repartition operator + # Create repartition operator if data is distributed differently than expected + # isequal(dims_prev, dims_i) && pushfirst!(ops, ParRepartition(DDT(Ai), comm_prev, comm_i, tuple(size_curr...))) + # if MPI.Comm_rank(comm_in) == 0 + # println(length(ops)) + # end # Create Kronecker w/ distributed identities idents_dim_lower = [] idents_dim_upper = [] for j in d+1:N + # println(size_curr[j], " Lower @ Rank ", MPI.Comm_rank(comm_i)) pushfirst!(idents_dim_lower, ParDistributed(ParIdentity(DDT(Ai), size_curr[j]), coords_i[j], dims_i[j])) end for j in 1:d-1 + # println(size_curr[j], " Upper @ Rank ", MPI.Comm_rank(comm_i)) pushfirst!(idents_dim_upper, ParDistributed(ParIdentity(DDT(Ai), size_curr[j]), coords_i[j], dims_i[j])) end @@ -289,6 +331,11 @@ function distribute(A::ParKron, dims_in, dims_out=dims_in, parent_comm=MPI.COMM_ pushfirst!(ops, ParRepartition(RDT(A.ops[A.order[end]]), comm_prev, comm_out, tuple(size_curr...))) + # for op in ops + # if MPI.Comm_rank(comm_prev) == 0 + # println(Range(op), " x ", Domain(op)) + # end + # end return ParCompose(ops...) end diff --git a/src/ParMatrix.jl b/src/ParMatrix.jl index d71da2e..c0560f5 100644 --- a/src/ParMatrix.jl +++ b/src/ParMatrix.jl @@ -10,10 +10,11 @@ struct ParMatrix{T} <: ParLinearOperator{T,T,Parametric,External} m::Int n::Int id::Any - ParMatrix(T::DataType, m::Int, n::Int, id) = new{T}(m, n, id) - ParMatrix(m::Int, n::Int, id) = new{Float64}(m, n, id) - ParMatrix(T::DataType, m::Int, n::Int) = new{T}(m, n, uuid4(Random.GLOBAL_RNG)) - ParMatrix(m::Int, n::Int) = new{Float64}(m, n, uuid4(Random.GLOBAL_RNG)) + state::Any + ParMatrix(T::DataType, m::Int, n::Int, id) = new{T}(m, n, id, 0) + ParMatrix(m::Int, n::Int, id) = new{Float64}(m, n, id, 0) + ParMatrix(T::DataType, m::Int, n::Int) = new{T}(m, n, uuid4(Random.GLOBAL_RNG), 0) + ParMatrix(m::Int, n::Int, state::Int) = new{Float64}(m, n, uuid4(Random.GLOBAL_RNG), state) end Domain(A::ParMatrix) = A.n @@ -25,6 +26,17 @@ complexity(A::ParMatrix{T}) where {T} = elementwise_multiplication_cost(T)*A.n*A function init!(A::ParMatrix{T}, d::Parameters) where {T<:Real} + # G = zeros(A.n, A.m) + # if A.state == 0 + # G[1, :] = [1, 2] + # G[2, :] = [3, 4] + # else + # G[1, :] = [5, 10] + # G[2, :] = [15, 20] + # end + # G = Float64.(G) + # d[A] = G + rng = Random.seed!(1234) # glorot_uniform init for dfno, does a lot better for some reason @@ -119,7 +131,7 @@ function init!(A::ParMatrixN{N,M,O,T}, d::Parameters) where {N,M,O,T<:Complex} d[A] = rand(T, A.weight_shape...) ./ convert(real(T), sqrt(prod(A.weight_shape))) end -# TODO: Add rest of the functionality +# TODO: Add rest of the functionality and abstract usage of einsum to another controller (A::ParParameterized{T,T,Linear,ParMatrixN{N,M,O,T},V})(x::X) where {N,M,O,T,V,X<:AbstractVector{T}} = vec(einsum(EinCode((A.op.weight_order,A.op.input_order),A.op.target_order),(A.params,reshape(x, A.op.input_shape)))) # (A::ParParameterized{T,T,Linear,ParMatrixN{N,M,O,T},V})(x::X) where {N,M,O,T,V,X<:AbstractMatrix{T}} = A.params*x @@ -162,4 +174,45 @@ function from_Dict(::Type{ParMatrixN}, d) mid = UUID(mid[6:end]) end ParMatrixN(dtype, d["ws"], d["wo"], d["is"], d["io"], d["to"], d["ts"], mid) -end \ No newline at end of file +end + +function distribute(A::ParMatrixN{N,M,O,T}, dims_in, comm::MPI.Comm = MPI.COMM_WORLD) where {N,M,O,T} + + @assert length(dims_in) == length(A.input_shape) + # TODO: Also assert comm size and dims_in product + + combined_tuples = tuple(A.input_order..., A.weight_order..., A.target_order...) + count_occurrences = (element_to_count) -> sum(element == element_to_count for element in combined_tuples) + + new_input_shape = collect(A.input_shape) + new_target_shape = collect(A.target_shape) + new_weight_shape = collect(A.weight_shape) + + for (i, dim) in enumerate(A.input_order) + dist_across = dims_in[dim] + if count_occurrences(dim) == 2 + # Do not distribute across the dimenions on which the convolution is performed + @assert dist_across == 1 + end + + # TODO: For now, only support perfect distribution because we have no way to refer to the communicator and cartesian grid + @assert A.input_shape[i] % dist_across == 0 + new_input_shape[i] = A.input_shape[i] ÷ dist_across + + for (j, dim_j) in enumerate(A.weight_order) + if dim_j == dim + new_weight_shape[j] = A.weight_shape[j] ÷ dist_across + break + end + end + + for (j, dim_j) in enumerate(A.target_order) + if dim_j == dim + new_target_shape[j] = A.target_shape[j] ÷ dist_across + break + end + end + end + + return ParMatrixN(T, A.weight_order, tuple(new_weight_shape...), A.input_order, tuple(new_input_shape...), A.target_order, tuple(new_target_shape...)) +end diff --git a/src/ParOperator.jl b/src/ParOperator.jl index 617b7fc..eb56ea3 100644 --- a/src/ParOperator.jl +++ b/src/ParOperator.jl @@ -202,8 +202,12 @@ end """ Parameterize the given operator """ -(A::ParOperator{D,R,L,Parametric,Internal})(params) where {D,R,L} = - rebuild(A, collect(map(c -> parametricity(c) == Parametric ? c(params) : c, children(A)))) +function (A::ParOperator{D,R,L,Parametric,Internal})(params) where {D,R,L} + # println("rbuh, ", Range(A), " x ", Domain(A)) + # println(length(children(A))) + return rebuild(A, collect(map(c -> parametricity(c) == Parametric ? c(params) : c, children(A)))) +end + """ Apply the given operator on a vector. diff --git a/src/ParRestriction.jl b/src/ParRestriction.jl index 0baea22..11b70ce 100644 --- a/src/ParRestriction.jl +++ b/src/ParRestriction.jl @@ -81,10 +81,10 @@ function (A::ParAdjoint{T,T,NonParametric,ParRestrictionN{N,T}})(y::Y) where {N, return x end -kron(A::ParRestriction{T}, B::ParRestriction{T}) where {T} = ParRestrictionN(T, (B.n, A.n), [vec(hcat(B.ranges...)), vec(hcat(A.ranges...))]) -kron(A::ParRestriction{T}, B::ParRestrictionN{N, T}) where {N, T} = ParRestrictionN(T, (B.shape..., A.n), [B.ranges..., vec(hcat(A.ranges...))]) -kron(A::ParRestrictionN{N, T}, B::ParRestriction{T}) where {N, T} = ParRestrictionN(T, (B.n, A.shape...), [vec(hcat(B.ranges...)), A.ranges...]) -kron(A::ParRestrictionN{M, T}, B::ParRestrictionN{N, T}) where {M, N, T} = ParRestrictionN(T, (B.shape..., A.shape...), [B.ranges..., A.ranges...]) +# kron(A::ParRestriction{T}, B::ParRestriction{T}) where {T} = ParRestrictionN(T, (B.n, A.n), [vec(hcat(B.ranges...)), vec(hcat(A.ranges...))]) +# kron(A::ParRestriction{T}, B::ParRestrictionN{N, T}) where {N, T} = ParRestrictionN(T, (B.shape..., A.n), [B.ranges..., vec(hcat(A.ranges...))]) +# kron(A::ParRestrictionN{N, T}, B::ParRestriction{T}) where {N, T} = ParRestrictionN(T, (B.n, A.shape...), [vec(hcat(B.ranges...)), A.ranges...]) +# kron(A::ParRestrictionN{M, T}, B::ParRestrictionN{N, T}) where {M, N, T} = ParRestrictionN(T, (B.shape..., A.shape...), [B.ranges..., A.ranges...]) function ChainRulesCore.rrule(A::ParRestrictionN{N, T}, x::X) where {N,T,X<:AbstractVector{T}} op_out = A(x) From 1e05cc3933c8d4f0bee4be9572f3d7c7a26b458e Mon Sep 17 00:00:00 2001 From: Rex Arockiasamy Date: Sun, 1 Oct 2023 09:20:26 -0400 Subject: [PATCH 05/38] removed type casting ParMatrix --- src/ParDFT.jl | 16 ++++++---------- src/ParKron.jl | 9 ++++++++- src/ParMatrix.jl | 1 + 3 files changed, 15 insertions(+), 11 deletions(-) diff --git a/src/ParDFT.jl b/src/ParDFT.jl index 9700bf6..46f2549 100644 --- a/src/ParDFT.jl +++ b/src/ParDFT.jl @@ -23,14 +23,12 @@ Range(A::ParDFT) = A.m complexity(A::ParDFT{D,R}) where {D,R} = elementwise_multiplication_cost(R)*A.n*log2(A.n) -# TODO: Address scaling constants - -(A::ParDFT{D,R})(x::X) where {D<:Complex,R,X<:AbstractMatrix{D}} = convert(Matrix{R}, fft(x, 1)) # ./ sqrt(A.n) -(A::ParDFT{D,R})(x::X) where {D<:Real,R,X<:AbstractMatrix{D}} = convert(Matrix{R}, rfft(x, 1)) # ./ sqrt(A.n) +(A::ParDFT{D,R})(x::X) where {D<:Complex,R,X<:AbstractMatrix{D}} = fft(x, 1) +(A::ParDFT{D,R})(x::X) where {D<:Real,R,X<:AbstractMatrix{D}} = rfft(x, 1) (A::ParDFT{D,R})(x::X) where {D,R,X<:AbstractVector{D}} = vec(A(reshape(x, length(x), 1))) -(A::ParAdjoint{D,R,NonParametric,ParDFT{D,R}})(x::X) where {D<:Complex,R,X<:AbstractMatrix{R}} = ifft(x, 1) # .* convert(real(D), sqrt(A.op.n)) -(A::ParAdjoint{D,R,NonParametric,ParDFT{D,R}})(x::X) where {D<:Real,R,X<:AbstractMatrix{R}} = irfft(x, A.op.n, 1) # .* convert(D, sqrt(A.op.n)) +(A::ParAdjoint{D,R,NonParametric,ParDFT{D,R}})(x::X) where {D<:Complex,R,X<:AbstractMatrix{R}} = ifft(x, 1) +(A::ParAdjoint{D,R,NonParametric,ParDFT{D,R}})(x::X) where {D<:Real,R,X<:AbstractMatrix{R}} = irfft(x, A.op.n, 1) (A::ParAdjoint{D,R,NonParametric,ParDFT{D,R}})(x::X) where {D,R,X<:AbstractVector{R}} = vec(A(reshape(x, length(x), 1))) to_Dict(A::ParDFT{D,R}) where {D,R} = Dict{String, Any}("type" => "ParDFT", "T" => string(D), "n" => A.n, "m" => A.m) @@ -62,10 +60,8 @@ end Domain(A::ParDFTN) = A.n Range(A::ParDFTN) = A.n -# TODO: Address scaling constants - -(A::ParDFTN{N,T})(x::X) where {N,T<:Complex,X<:AbstractVector{T}} = vec(fft(reshape(x, A.shape))) # ./ T(sqrt(A.n))) -(A::ParAdjoint{D,R,NonParametric,ParDFTN{N,T}})(x::X) where {D<:Complex,R,N,T<:Complex,X<:AbstractVector{T}} = vec(ifft(reshape(x, A.op.shape))) # .* T(sqrt(A.op.n))) +(A::ParDFTN{N,T})(x::X) where {N,T<:Complex,X<:AbstractVector{T}} = vec(fft(reshape(x, A.shape))) +(A::ParAdjoint{D,R,NonParametric,ParDFTN{N,T}})(x::X) where {D<:Complex,R,N,T<:Complex,X<:AbstractVector{T}} = vec(ifft(reshape(x, A.op.shape))) kron(A::ParDFT{T,T}, B::ParDFT{T,T}) where {T} = ParDFTN(B.n, A.n, T=T) kron(A::ParDFT{T,T}, B::ParDFTN{N,T}) where {N,T} = ParDFTN(B.shape..., A.n, T=T) diff --git a/src/ParKron.jl b/src/ParKron.jl index c6abb92..66c9140 100644 --- a/src/ParKron.jl +++ b/src/ParKron.jl @@ -200,27 +200,34 @@ end function (A::ParKron{D,R,<:Applicable,F,N})(x::X) where {D,R,F,N,X<:AbstractMatrix{D}} # println("Here") # Reshape to inpu t shape + # println("0:", typeof(x)) b = size(x)[2] s = reverse(collect(map(Domain, A.ops))) # println(s) x = reshape(x, s..., b) + # println("0.5:", typeof(x)) # Apply operators in order, permuting to enforce leading dim of x to # align with current operator x = rotate_dims_batched(x, -(N-A.order[1])) - + # println("1:", typeof(x)) for i in 1:N o = A.order[i] s = size(x) x = as_matrix(x) + # println("2:", typeof(x)) Ai = A.ops[o] + # println("3:", typeof(x), typeof(Ai)) x = Ai*x + # println("4:", typeof(x)) x = reshape(x, Range(Ai), s[2:end]...) + # println("5:", typeof(x)) if i < N x = rotate_dims_batched(x, N-o-(N-A.order[i+1])) else x = rotate_dims_batched(x, o) end + # println("6:", typeof(x)) end nelem = prod(size(x)) diff --git a/src/ParMatrix.jl b/src/ParMatrix.jl index c0560f5..898e268 100644 --- a/src/ParMatrix.jl +++ b/src/ParMatrix.jl @@ -134,6 +134,7 @@ end # TODO: Add rest of the functionality and abstract usage of einsum to another controller (A::ParParameterized{T,T,Linear,ParMatrixN{N,M,O,T},V})(x::X) where {N,M,O,T,V,X<:AbstractVector{T}} = vec(einsum(EinCode((A.op.weight_order,A.op.input_order),A.op.target_order),(A.params,reshape(x, A.op.input_shape)))) +# (A::ParParameterized{T,T,Linear,ParMatrixN{N,M,O,T},V})(x::X) where {N,M,O,T,V,X<:AbstractVector{T}} = vec(einsum(EinCode((A.op.weight_order,A.op.input_order),A.op.target_order),(A.params |> cpu,reshape(x, A.op.input_shape) |> cpu))) |> gpu # (A::ParParameterized{T,T,Linear,ParMatrixN{N,M,O,T},V})(x::X) where {N,M,O,T,V,X<:AbstractMatrix{T}} = A.params*x # (A::ParParameterized{T,T,Linear,ParAdjoint{T,T,Parametric,ParMatrixN{N,M,O,T}},V})(x::X) where {N,M,O,T,V,X<:AbstractVector{T}} = A.params[A.op.op]'*x # (A::ParParameterized{T,T,Linear,ParAdjoint{T,T,Parametric,ParMatrixN{N,M,O,T}},V})(x::X) where {N,M,O,T,V,X<:AbstractMatrix{T}} = A.params[A.op.op]'*x From 242a73c61aa837b585ecea5a401769ded29d1915 Mon Sep 17 00:00:00 2001 From: turquoisedragon2926 Date: Thu, 5 Oct 2023 21:09:46 -0400 Subject: [PATCH 06/38] fix krocker update --- src/ParKron.jl | 69 ++++++++++++++++++++++++++++++------------------ src/ParMatrix.jl | 10 +++---- 2 files changed, 47 insertions(+), 32 deletions(-) diff --git a/src/ParKron.jl b/src/ParKron.jl index 66c9140..472b4f0 100644 --- a/src/ParKron.jl +++ b/src/ParKron.jl @@ -198,39 +198,51 @@ function transforms(A::ParKron) end function (A::ParKron{D,R,<:Applicable,F,N})(x::X) where {D,R,F,N,X<:AbstractMatrix{D}} - # println("Here") + # comm = MPI.COMM_WORLD + # rank = MPI.Comm_rank(comm) + # rank == 0 && println(x) + # rank == 0 && println("Here") # Reshape to inpu t shape - # println("0:", typeof(x)) + # rank == 0 && println("0:", typeof(x)) b = size(x)[2] s = reverse(collect(map(Domain, A.ops))) - # println(s) + # rank == 0 && println("Size: ", s) x = reshape(x, s..., b) - # println("0.5:", typeof(x)) + # rank == 0 && println("0.5:", typeof(x)) # Apply operators in order, permuting to enforce leading dim of x to # align with current operator + # rank == 0 && println("Pre Rotation: ", x) x = rotate_dims_batched(x, -(N-A.order[1])) - # println("1:", typeof(x)) + # rank == 0 && println("Post rotation: ", x) + # rank == 0 && println("1:", typeof(x)) + # rank == 0 && println("Starting Loop") for i in 1:N o = A.order[i] s = size(x) x = as_matrix(x) - # println("2:", typeof(x)) + # rank == 0 && println("2:", typeof(x)) Ai = A.ops[o] - # println("3:", typeof(x), typeof(Ai)) + # rank == 0 && println(i, " ", x, " ", typeof(Ai), " ", Range(Ai), "x", Domain(Ai)) + # rank == 0 && println("3:", typeof(x), typeof(Ai)) x = Ai*x - # println("4:", typeof(x)) + # rank == 0 && println(i, " Post operation: ", x) + # rank == 0 && println("4:", typeof(x)) x = reshape(x, Range(Ai), s[2:end]...) - # println("5:", typeof(x)) + # rank == 0 && println("5:", typeof(x)) if i < N + # rank == 0 && println("rotation around: ", N-o-(N-A.order[i+1])) x = rotate_dims_batched(x, N-o-(N-A.order[i+1])) else - x = rotate_dims_batched(x, o) + # rank == 0 && println("rotation around: ", -o) + x = rotate_dims_batched(x, -o) end - # println("6:", typeof(x)) + # rank == 0 && println(i, " ", reshape(x, 4, 1)) + # rank == 0 && println("6:", typeof(x)) end nelem = prod(size(x)) + # rank == 0 && println(reshape(x, nelem÷b, b)) return reshape(x, nelem÷b, b) end @@ -270,6 +282,8 @@ Distributes Kronecker product over the given communicator function distribute(A::ParKron, comm_in::MPI.Comm, comm_out::MPI.Comm, parent_comm=MPI.COMM_WORLD) dims, _, _ = MPI.Cart_get(comm_in) + dims_out, _, _ = MPI.Cart_get(comm_out) + N = length(dims) @assert length(A.ops) == N @@ -280,7 +294,7 @@ function distribute(A::ParKron, comm_in::MPI.Comm, comm_out::MPI.Comm, parent_co ops = [] # if MPI.Comm_rank(comm_in) == 0 - # println(size_curr, A.order) + # println(size_curr, A.order) # end for i in 1:N @@ -295,27 +309,27 @@ function distribute(A::ParKron, comm_in::MPI.Comm, comm_out::MPI.Comm, parent_co dims_i[d] = 1 dims_i[mod1(d+1, N)] *= dims[d] # if MPI.Comm_rank(comm_in) == 0 # Move the distribution for i th operator to the i+1 th operator - # println(d) - # println(dims_i) + # println(d) + # println(dims_i) # end comm_i = MPI.Cart_create(parent_comm, dims_i) + rank = MPI.Comm_rank(comm_i) coords_i = MPI.Cart_coords(comm_i) # if MPI.Comm_rank(comm_in) == 1 # Move the distribution for i th operator to the i+1 th operator - # println(coords_i) + # println(coords_i) # end - MPI.Comm_rank(comm_in) == 0 && println("Iteration: ", i, ". d: ", d, " ", dims_prev, " ", dims_i, " ", typeof(Ai)) + MPI.Comm_rank(comm_in) == 0 && println("Iteration: ", i, ". d: ", d, " ", dims_i, " ", typeof(Ai)) - # # Skip this iteration if it does nothing: isequal(dims_prev, dims_i) && ?? - # (typeof(Ai) <: ParIdentity) && (MPI.Comm_rank(comm_in) == 0) && println("Skipping loop at Iter: ", i) - # (typeof(Ai) <: ParIdentity) && continue + # Skip this iteration if it does nothing + (typeof(Ai) <: ParIdentity) && (MPI.Comm_rank(comm_in) == 0) && println("Skipping loop at Iter: ", i) + (typeof(Ai) <: ParIdentity) && continue # Create repartition operator if data is distributed differently than expected - # isequal(dims_prev, dims_i) && - pushfirst!(ops, ParRepartition(DDT(Ai), comm_prev, comm_i, tuple(size_curr...))) + !isequal(dims_prev, dims_i) && pushfirst!(ops, ParRepartition(DDT(Ai), comm_prev, comm_i, tuple(size_curr...))) # if MPI.Comm_rank(comm_in) == 0 - # println(length(ops)) + # println(length(ops)) # end # Create Kronecker w/ distributed identities idents_dim_lower = [] @@ -324,23 +338,28 @@ function distribute(A::ParKron, comm_in::MPI.Comm, comm_out::MPI.Comm, parent_co for j in d+1:N # println(size_curr[j], " Lower @ Rank ", MPI.Comm_rank(comm_i)) pushfirst!(idents_dim_lower, ParDistributed(ParIdentity(DDT(Ai), size_curr[j]), coords_i[j], dims_i[j])) + rank == 0 && println("Lower: ", Range(idents_dim_lower[1]), "x", Domain(idents_dim_lower[1])) end for j in 1:d-1 # println(size_curr[j], " Upper @ Rank ", MPI.Comm_rank(comm_i)) pushfirst!(idents_dim_upper, ParDistributed(ParIdentity(DDT(Ai), size_curr[j]), coords_i[j], dims_i[j])) + rank == 0 && println("Upper: ", Range(idents_dim_upper[1]), "x", Domain(idents_dim_upper[1])) end - pushfirst!(ops, ParKron(idents_dim_upper..., ParBroadcasted(Ai, comm_i), idents_dim_lower...)) + rank == 0 && println("Actual: ", Range(Ai), "x", Domain(Ai)) + + pushfirst!(ops, ParKron(idents_dim_lower..., ParBroadcasted(Ai, comm_i), idents_dim_upper...)) size_curr[d] = Range(Ai) comm_prev = comm_i + dims_prev = dims_i end - pushfirst!(ops, ParRepartition(RDT(A.ops[A.order[end]]), comm_prev, comm_out, tuple(size_curr...))) + !isequal(dims_prev, dims_out) && pushfirst!(ops, ParRepartition(RDT(A.ops[A.order[end]]), comm_prev, comm_out, tuple(size_curr...))) # for op in ops # if MPI.Comm_rank(comm_prev) == 0 - # println(Range(op), " x ", Domain(op)) + # println(Range(op), " x ", Domain(op)) # end # end return ParCompose(ops...) diff --git a/src/ParMatrix.jl b/src/ParMatrix.jl index 898e268..c29c98b 100644 --- a/src/ParMatrix.jl +++ b/src/ParMatrix.jl @@ -27,15 +27,11 @@ complexity(A::ParMatrix{T}) where {T} = elementwise_multiplication_cost(T)*A.n*A function init!(A::ParMatrix{T}, d::Parameters) where {T<:Real} # G = zeros(A.n, A.m) - # if A.state == 0 - # G[1, :] = [1, 2] - # G[2, :] = [3, 4] - # else - # G[1, :] = [5, 10] - # G[2, :] = [15, 20] - # end + # G[1, :] = [1, 2] + # G[2, :] = [3, 4] # G = Float64.(G) # d[A] = G + # return rng = Random.seed!(1234) From 6a703c212c3f6ab8a9b8d87d4cdda6d23abca7e6 Mon Sep 17 00:00:00 2001 From: turquoisedragon2926 Date: Tue, 10 Oct 2023 10:40:50 -0400 Subject: [PATCH 07/38] remove prints --- src/ParKron.jl | 12 ++++++------ 1 file changed, 6 insertions(+), 6 deletions(-) diff --git a/src/ParKron.jl b/src/ParKron.jl index 472b4f0..35366f0 100644 --- a/src/ParKron.jl +++ b/src/ParKron.jl @@ -319,10 +319,10 @@ function distribute(A::ParKron, comm_in::MPI.Comm, comm_out::MPI.Comm, parent_co # println(coords_i) # end - MPI.Comm_rank(comm_in) == 0 && println("Iteration: ", i, ". d: ", d, " ", dims_i, " ", typeof(Ai)) + # MPI.Comm_rank(comm_in) == 0 && println("Iteration: ", i, ". d: ", d, " ", dims_i, " ", typeof(Ai)) - # Skip this iteration if it does nothing - (typeof(Ai) <: ParIdentity) && (MPI.Comm_rank(comm_in) == 0) && println("Skipping loop at Iter: ", i) + # # Skip this iteration if it does nothing + # (typeof(Ai) <: ParIdentity) && (MPI.Comm_rank(comm_in) == 0) && println("Skipping loop at Iter: ", i) (typeof(Ai) <: ParIdentity) && continue # Create repartition operator if data is distributed differently than expected @@ -338,15 +338,15 @@ function distribute(A::ParKron, comm_in::MPI.Comm, comm_out::MPI.Comm, parent_co for j in d+1:N # println(size_curr[j], " Lower @ Rank ", MPI.Comm_rank(comm_i)) pushfirst!(idents_dim_lower, ParDistributed(ParIdentity(DDT(Ai), size_curr[j]), coords_i[j], dims_i[j])) - rank == 0 && println("Lower: ", Range(idents_dim_lower[1]), "x", Domain(idents_dim_lower[1])) + # rank == 0 && println("Lower: ", Range(idents_dim_lower[1]), "x", Domain(idents_dim_lower[1])) end for j in 1:d-1 # println(size_curr[j], " Upper @ Rank ", MPI.Comm_rank(comm_i)) pushfirst!(idents_dim_upper, ParDistributed(ParIdentity(DDT(Ai), size_curr[j]), coords_i[j], dims_i[j])) - rank == 0 && println("Upper: ", Range(idents_dim_upper[1]), "x", Domain(idents_dim_upper[1])) + # rank == 0 && println("Upper: ", Range(idents_dim_upper[1]), "x", Domain(idents_dim_upper[1])) end - rank == 0 && println("Actual: ", Range(Ai), "x", Domain(Ai)) + # rank == 0 && println("Actual: ", Range(Ai), "x", Domain(Ai)) pushfirst!(ops, ParKron(idents_dim_lower..., ParBroadcasted(Ai, comm_i), idents_dim_upper...)) From 1cce8e64d29b5edeb2335b39320216c5f3978dcf Mon Sep 17 00:00:00 2001 From: Rex Arockiasamy Date: Tue, 10 Oct 2023 11:30:03 -0400 Subject: [PATCH 08/38] ID for ParDiagonal --- src/ParDiagonal.jl | 29 +++++++++++++++++++++++++---- 1 file changed, 25 insertions(+), 4 deletions(-) diff --git a/src/ParDiagonal.jl b/src/ParDiagonal.jl index 346b653..61925eb 100644 --- a/src/ParDiagonal.jl +++ b/src/ParDiagonal.jl @@ -5,8 +5,11 @@ Diagonal matrix (elementwise) operator. """ struct ParDiagonal{T} <: ParLinearOperator{T,T,Parametric,External} n::Int - ParDiagonal(T, n) = new{T}(n) - ParDiagonal(n) = new{Float64}(n) + id::Any + ParDiagonal(T::DataType, n::Int) = new{T}(n, uuid4(Random.GLOBAL_RNG)) + ParDiagonal(n::Int) = new{Float64}(n, uuid4(Random.GLOBAL_RNG)) + ParDiagonal(T::DataType, n::Int, id) = new{T}(n, id) + ParDiagonal(n::Int, id) = new{Float64}(n, id) end Domain(A::ParDiagonal) = A.n @@ -28,7 +31,21 @@ end *(x::X, A::ParParameterized{T,T,Linear,ParAdjoint{T,T,Parametric,ParDiagonal{T}},V}) where {T,V,X<:AbstractVector{T}} = x.*conj(A.params[A.op.op]) *(x::X, A::ParParameterized{T,T,Linear,ParAdjoint{T,T,Parametric,ParDiagonal{T}},V}) where {T,V,X<:AbstractMatrix{T}} = x.*conj(A.params[A.op.op]) -to_Dict(A::ParDiagonal{T}) where {T} = Dict{String, Any}("type" => "ParDiagonal", "T" => string(T), "n" => A.n) +function to_Dict(A::ParDiagonal{T}) where {T} + rv = Dict{String, Any}( + "type" => "ParDiagonal", + "T" => string(T), + "n" => A.n + ) + if typeof(A.id) == String + rv["id"] = A.id + elseif typeof(A.id) == UUID + rv["id"] = "UUID:$(string(A.id))" + else + throw(ParException("I don't know how to encode id of type $(typeof(A.id))")) + end + rv +end function from_Dict(::Type{ParDiagonal}, d) ts = d["T"] @@ -36,7 +53,11 @@ function from_Dict(::Type{ParDiagonal}, d) throw(ParException("unknown data type `$ts`")) end dtype = Data_TYPES[ts] - ParDiagonal(dtype, d["n"]) + mid = d["id"] + if startswith(mid, "UUID:") + mid = UUID(mid[6:end]) + end + ParDiagonal(dtype, d["n"], mid) end function distribute(A::ParDiagonal{T}, comm::MPI.Comm = MPI.COMM_WORLD) where {T} From e07954a25c493b186ef864da1dcde8230709fcaf Mon Sep 17 00:00:00 2001 From: Rex Arockiasamy Date: Tue, 10 Oct 2023 13:58:55 -0400 Subject: [PATCH 09/38] remove state --- src/ParMatrix.jl | 10 ++++------ 1 file changed, 4 insertions(+), 6 deletions(-) diff --git a/src/ParMatrix.jl b/src/ParMatrix.jl index c29c98b..fe145e9 100644 --- a/src/ParMatrix.jl +++ b/src/ParMatrix.jl @@ -1,6 +1,5 @@ export ParMatrix, ParMatrixN -using Random using OMEinsum """ @@ -10,11 +9,10 @@ struct ParMatrix{T} <: ParLinearOperator{T,T,Parametric,External} m::Int n::Int id::Any - state::Any - ParMatrix(T::DataType, m::Int, n::Int, id) = new{T}(m, n, id, 0) - ParMatrix(m::Int, n::Int, id) = new{Float64}(m, n, id, 0) - ParMatrix(T::DataType, m::Int, n::Int) = new{T}(m, n, uuid4(Random.GLOBAL_RNG), 0) - ParMatrix(m::Int, n::Int, state::Int) = new{Float64}(m, n, uuid4(Random.GLOBAL_RNG), state) + ParMatrix(T::DataType, m::Int, n::Int, id) = new{T}(m, n, id) + ParMatrix(m::Int, n::Int, id) = new{Float64}(m, n, id) + ParMatrix(T::DataType, m::Int, n::Int) = new{T}(m, n, uuid4(Random.GLOBAL_RNG)) + ParMatrix(m::Int, n::Int) = new{Float64}(m, n, uuid4(Random.GLOBAL_RNG)) end Domain(A::ParMatrix) = A.n From c47aa88d9038fba24d43411d6d6affa16dabea62 Mon Sep 17 00:00:00 2001 From: turquoisedragon2926 Date: Thu, 12 Oct 2023 11:28:10 -0400 Subject: [PATCH 10/38] dist ID for mapping --- src/ParMatrix.jl | 9 +++++++-- 1 file changed, 7 insertions(+), 2 deletions(-) diff --git a/src/ParMatrix.jl b/src/ParMatrix.jl index fe145e9..6851df3 100644 --- a/src/ParMatrix.jl +++ b/src/ParMatrix.jl @@ -174,6 +174,10 @@ end function distribute(A::ParMatrixN{N,M,O,T}, dims_in, comm::MPI.Comm = MPI.COMM_WORLD) where {N,M,O,T} @assert length(dims_in) == length(A.input_shape) + + comm_cart = MPI.Cart_create(comm, dims_in) + coords = MPI.Cart_coords(comm_cart) + # TODO: Also assert comm size and dims_in product combined_tuples = tuple(A.input_order..., A.weight_order..., A.target_order...) @@ -190,7 +194,8 @@ function distribute(A::ParMatrixN{N,M,O,T}, dims_in, comm::MPI.Comm = MPI.COMM_W @assert dist_across == 1 end - # TODO: For now, only support perfect distribution because we have no way to refer to the communicator and cartesian grid + # TODO: For now, only support perfect distribution + @assert A.input_shape[i] % dist_across == 0 new_input_shape[i] = A.input_shape[i] ÷ dist_across @@ -209,5 +214,5 @@ function distribute(A::ParMatrixN{N,M,O,T}, dims_in, comm::MPI.Comm = MPI.COMM_W end end - return ParMatrixN(T, A.weight_order, tuple(new_weight_shape...), A.input_order, tuple(new_input_shape...), A.target_order, tuple(new_target_shape...)) + return ParMatrixN(T, A.weight_order, tuple(new_weight_shape...), A.input_order, tuple(new_input_shape...), A.target_order, tuple(new_target_shape...), "$(A.id):($(join(coords, ',')))") end From 5855395168364468e4411a97aaa396a0c1c4491d Mon Sep 17 00:00:00 2001 From: turquoisedragon2926 Date: Thu, 12 Oct 2023 17:25:28 -0400 Subject: [PATCH 11/38] Added ParReduce --- src/ParReduce.jl | 16 ++++++++++++++++ src/ParametricOperators.jl | 1 + 2 files changed, 17 insertions(+) create mode 100644 src/ParReduce.jl diff --git a/src/ParReduce.jl b/src/ParReduce.jl new file mode 100644 index 0000000..f39e57b --- /dev/null +++ b/src/ParReduce.jl @@ -0,0 +1,16 @@ +export ParReduce + +""" +Reduction Operator. Reduce across the given communicator +""" +struct ParReduce{T} <: ParOperator{T,T,Linear,NonParametric,External} + comm::MPI.Comm + + ParReduce() = new{Float64}(MPI.COMM_WORLD) + ParReduce(T::DataType) = new{T}(MPI.COMM_WORLD) + ParReduce(T::DataType, comm::MPI.Comm) = new{T}(comm) + ParReduce(comm::MPI.Comm) = new{Float64}(comm) +end + +(A::ParReduce{T})(x::X) where {T,X<:AbstractVector{T}} = MPI.Allreduce(x, MPI.SUM, A.comm) +(A::ParReduce{T})(x::X) where {T,X<:AbstractArray{T}} = MPI.Allreduce(x, MPI.SUM, A.comm) diff --git a/src/ParametricOperators.jl b/src/ParametricOperators.jl index d8a0e3d..e197825 100644 --- a/src/ParametricOperators.jl +++ b/src/ParametricOperators.jl @@ -32,6 +32,7 @@ include("ASTOptimization.jl") include("ParDistributed.jl") include("ParBroadcasted.jl") include("ParRepartition.jl") +include("ParReduce.jl") # Operator wrappers include("ParIdentity.jl") # Include above for use in transforms, etc. From be9ad09af6fc245f5343fa55f7c686e75388a129 Mon Sep 17 00:00:00 2001 From: turquoisedragon2926 Date: Mon, 16 Oct 2023 15:59:42 -0400 Subject: [PATCH 12/38] rrules and distribution --- src/ParBroadcasted.jl | 9 +++++---- src/ParDiagonal.jl | 2 +- src/ParReduce.jl | 16 ++++++++++++++++ 3 files changed, 22 insertions(+), 5 deletions(-) diff --git a/src/ParBroadcasted.jl b/src/ParBroadcasted.jl index 017d11e..346d630 100644 --- a/src/ParBroadcasted.jl +++ b/src/ParBroadcasted.jl @@ -37,12 +37,13 @@ end function ChainRulesCore.rrule(A::ParBroadcasted{D,R,L,Parametric,F}, params) where {D,R,L,F} op_out = A(params) function pullback(op) - θ_global = [MPI.Reduce(θ, MPI.SUM, op.root, op.comm) for θ in op.op.params] - if MPI.Comm_rank(op.comm) == op.root - return NoTangent(), θ_global + θ_global = MPI.Reduce(op.op.params, MPI.SUM, A.root, A.comm) + + if MPI.Comm_rank(A.comm) == A.root + return NoTangent(), Dict(A.op=>θ_global) else return NoTangent(), NoTangent() end end return op_out, pullback -end \ No newline at end of file +end diff --git a/src/ParDiagonal.jl b/src/ParDiagonal.jl index 61925eb..61ba63d 100644 --- a/src/ParDiagonal.jl +++ b/src/ParDiagonal.jl @@ -63,4 +63,4 @@ end function distribute(A::ParDiagonal{T}, comm::MPI.Comm = MPI.COMM_WORLD) where {T} local_n = local_size(A.n, MPI.Comm_rank(comm), MPI.Comm_size(comm)) return ParDiagonal(T, local_n) -end \ No newline at end of file +end diff --git a/src/ParReduce.jl b/src/ParReduce.jl index f39e57b..b7f15c2 100644 --- a/src/ParReduce.jl +++ b/src/ParReduce.jl @@ -14,3 +14,19 @@ end (A::ParReduce{T})(x::X) where {T,X<:AbstractVector{T}} = MPI.Allreduce(x, MPI.SUM, A.comm) (A::ParReduce{T})(x::X) where {T,X<:AbstractArray{T}} = MPI.Allreduce(x, MPI.SUM, A.comm) + +function ChainRulesCore.rrule(A::ParReduce{T}, x::X) where {T,X<:AbstractVector{T}} + op_out = A(x) + function pullback(op) + return NoTangent(), op + end + return op_out, pullback +end + +function ChainRulesCore.rrule(A::ParReduce{T}, x::X) where {T,X<:AbstractArray{T}} + op_out = A(x) + function pullback(op) + return NoTangent(), op + end + return op_out, pullback +end From 0707b4a80a07f660eb886d0c059402549ca12d09 Mon Sep 17 00:00:00 2001 From: turquoisedragon2926 Date: Tue, 17 Oct 2023 00:04:47 -0400 Subject: [PATCH 13/38] rrule repartition --- src/ParRepartition.jl | 10 +++++++++- 1 file changed, 9 insertions(+), 1 deletion(-) diff --git a/src/ParRepartition.jl b/src/ParRepartition.jl index 5fe9477..24db1ef 100644 --- a/src/ParRepartition.jl +++ b/src/ParRepartition.jl @@ -194,4 +194,12 @@ end function (R::ParRepartition{T,N})(x::X) where {T,N,X<:AbstractVector{T}} y = R(reshape(x, length(x), 1)) return vec(y) -end \ No newline at end of file +end + +function ChainRulesCore.rrule(A::ParRepartition{T,N}, x::X) where {T,N,X<:AbstractMatrix{T}} + op_out = A(x) + function pullback(op) + return NoTangent(), A'(op) + end + return op_out, pullback +end From eb22b585c3b7bae318dcb1be144687a49ff8cfd5 Mon Sep 17 00:00:00 2001 From: turquoisedragon2926 Date: Thu, 19 Oct 2023 21:17:38 -0400 Subject: [PATCH 14/38] easier for saving weights --- src/ParMatrix.jl | 2 +- src/ParReduce.jl | 4 ++-- 2 files changed, 3 insertions(+), 3 deletions(-) diff --git a/src/ParMatrix.jl b/src/ParMatrix.jl index 6851df3..3b47f26 100644 --- a/src/ParMatrix.jl +++ b/src/ParMatrix.jl @@ -214,5 +214,5 @@ function distribute(A::ParMatrixN{N,M,O,T}, dims_in, comm::MPI.Comm = MPI.COMM_W end end - return ParMatrixN(T, A.weight_order, tuple(new_weight_shape...), A.input_order, tuple(new_input_shape...), A.target_order, tuple(new_target_shape...), "$(A.id):($(join(coords, ',')))") + return MPI.Comm_size(comm) == 1 ? A : ParMatrixN(T, A.weight_order, tuple(new_weight_shape...), A.input_order, tuple(new_input_shape...), A.target_order, tuple(new_target_shape...), "$(A.id):($(join(coords, ',')))") end diff --git a/src/ParReduce.jl b/src/ParReduce.jl index b7f15c2..4ddf97d 100644 --- a/src/ParReduce.jl +++ b/src/ParReduce.jl @@ -18,7 +18,7 @@ end function ChainRulesCore.rrule(A::ParReduce{T}, x::X) where {T,X<:AbstractVector{T}} op_out = A(x) function pullback(op) - return NoTangent(), op + return NoTangent(), A(op) end return op_out, pullback end @@ -26,7 +26,7 @@ end function ChainRulesCore.rrule(A::ParReduce{T}, x::X) where {T,X<:AbstractArray{T}} op_out = A(x) function pullback(op) - return NoTangent(), op + return NoTangent(), A(op) end return op_out, pullback end From 7545303709905437b71db73ce7ab6944e7f7bfa3 Mon Sep 17 00:00:00 2001 From: turquoisedragon2926 Date: Sat, 21 Oct 2023 01:40:51 -0400 Subject: [PATCH 15/38] Move ParMatrixN to seperate component --- src/ParMatrix.jl | 131 +------------------------------------ src/ParMatrixN.jl | 130 ++++++++++++++++++++++++++++++++++++ src/ParReduce.jl | 3 +- src/ParametricOperators.jl | 3 +- 4 files changed, 135 insertions(+), 132 deletions(-) create mode 100644 src/ParMatrixN.jl diff --git a/src/ParMatrix.jl b/src/ParMatrix.jl index 3b47f26..d056890 100644 --- a/src/ParMatrix.jl +++ b/src/ParMatrix.jl @@ -1,6 +1,4 @@ -export ParMatrix, ParMatrixN - -using OMEinsum +export ParMatrix """ Dense matrix operator. @@ -89,130 +87,3 @@ function from_Dict(::Type{ParMatrix}, d) end ParMatrix(dtype, d["m"], d["n"], mid) end - -""" -Dense N dimensional matrix operator. -""" -struct ParMatrixN{N,M,O,T} <: ParLinearOperator{T,T,Parametric,External} - weight_order::Tuple{Vararg{Int,N}} - weight_shape::Tuple{Vararg{Int,N}} - - input_order::Tuple{Vararg{Int,M}} - input_shape::Tuple{Vararg{Int,M}} - - target_order::Tuple{Vararg{Int,O}} - target_shape::Tuple{Vararg{Int,O}} - id::Any - - ParMatrixN(T::DataType, wo::Tuple{Vararg{Int,N}}, ws::Tuple{Vararg{Int,N}}, io::Tuple{Vararg{Int,M}}, is::Tuple{Vararg{Int,M}}, to::Tuple{Vararg{Int,O}}, ts::Tuple{Vararg{Int,O}}, id) where {N, M, O} = new{N,M,O,T}(wo, ws, io, is, to, ts, id) - ParMatrixN(wo::Tuple{Vararg{Int,N}}, ws::Tuple{Vararg{Int,N}}, io::Tuple{Vararg{Int,M}}, is::Tuple{Vararg{Int,M}}, to::Tuple{Vararg{Int,O}}, ts::Tuple{Vararg{Int,O}}, id) where {N, M, O} = new{N,M,O,Float64}(wo, ws, io, is, to, ts, id) - ParMatrixN(T::DataType, wo::Tuple{Vararg{Int,N}}, ws::Tuple{Vararg{Int,N}}, io::Tuple{Vararg{Int,M}}, is::Tuple{Vararg{Int,M}}, to::Tuple{Vararg{Int,O}}, ts::Tuple{Vararg{Int,O}}) where {N, M, O} = new{N,M,O,T}(wo, ws, io, is, to, ts, uuid4(Random.GLOBAL_RNG)) - ParMatrixN(wo::Tuple{Vararg{Int,N}}, ws::Tuple{Vararg{Int,N}}, io::Tuple{Vararg{Int,M}}, is::Tuple{Vararg{Int,M}}, to::Tuple{Vararg{Int,O}}, ts::Tuple{Vararg{Int,O}}) where {N, M, O} = new{N,M,O,Float64}(wo, ws, io, is, to, ts, uuid4(Random.GLOBAL_RNG)) -end - -Domain(A::ParMatrixN) = prod(A.input_shape) -Range(A::ParMatrixN) = prod(A.target_shape) - -# TODO: Remove seeds - -function init!(A::ParMatrixN{N,M,O,T}, d::Parameters) where {N,M,O,T<:Real} - Random.seed!(1234) - d[A] = rand(T, A.weight_shape...) ./ convert(T, sqrt(prod(A.weight_shape))) -end - -function init!(A::ParMatrixN{N,M,O,T}, d::Parameters) where {N,M,O,T<:Complex} - Random.seed!(1234) - d[A] = rand(T, A.weight_shape...) ./ convert(real(T), sqrt(prod(A.weight_shape))) -end - -# TODO: Add rest of the functionality and abstract usage of einsum to another controller - -(A::ParParameterized{T,T,Linear,ParMatrixN{N,M,O,T},V})(x::X) where {N,M,O,T,V,X<:AbstractVector{T}} = vec(einsum(EinCode((A.op.weight_order,A.op.input_order),A.op.target_order),(A.params,reshape(x, A.op.input_shape)))) -# (A::ParParameterized{T,T,Linear,ParMatrixN{N,M,O,T},V})(x::X) where {N,M,O,T,V,X<:AbstractVector{T}} = vec(einsum(EinCode((A.op.weight_order,A.op.input_order),A.op.target_order),(A.params |> cpu,reshape(x, A.op.input_shape) |> cpu))) |> gpu -# (A::ParParameterized{T,T,Linear,ParMatrixN{N,M,O,T},V})(x::X) where {N,M,O,T,V,X<:AbstractMatrix{T}} = A.params*x -# (A::ParParameterized{T,T,Linear,ParAdjoint{T,T,Parametric,ParMatrixN{N,M,O,T}},V})(x::X) where {N,M,O,T,V,X<:AbstractVector{T}} = A.params[A.op.op]'*x -# (A::ParParameterized{T,T,Linear,ParAdjoint{T,T,Parametric,ParMatrixN{N,M,O,T}},V})(x::X) where {N,M,O,T,V,X<:AbstractMatrix{T}} = A.params[A.op.op]'*x -# *(x::X, A::ParParameterized{T,T,Linear,ParMatrixN{N,M,O,T},V}) where {N,M,O,T,V,X<:AbstractVector{T}} = x*A.params -# *(x::X, A::ParParameterized{T,T,Linear,ParMatrixN{N,M,O,T},V}) where {N,M,O,T,V,X<:AbstractMatrix{T}} = x*A.params -# *(x::X, A::ParParameterized{T,T,Linear,ParAdjoint{T,T,Parametric,ParMatrixN{N,M,O,T}},V}) where {N,M,O,T,V,X<:AbstractVector{T}} = x*A.params[A.op.op]' -# *(x::X, A::ParParameterized{T,T,Linear,ParAdjoint{T,T,Parametric,ParMatrixN{N,M,O,T}},V}) where {N,M,O,T,V,X<:AbstractMatrix{T}} = x*A.params[A.op.op]' - -function to_Dict(A::ParMatrixN{N,M,O,T}) where {N,M,O,T} - rv = Dict{String, Any}( - "type" => "ParMatrixN", - "T" => string(T), - "ws" => A.weight_shape, - "wo" => A.weight_order, - "is" => A.input_shape, - "io" => A.input_order, - "to" => A.target_order, - "ts" => A.target_shape, - ) - if typeof(A.id) == String - rv["id"] = A.id - elseif typeof(A.id) == UUID - rv["id"] = "UUID:$(string(A.id))" - else - throw(ParException("I don't know how to encode id of type $(typeof(A.id))")) - end - rv -end - -function from_Dict(::Type{ParMatrixN}, d) - ts = d["T"] - if !haskey(Data_TYPES, ts) - throw(ParException("unknown data type `$ts`")) - end - dtype = Data_TYPES[ts] - mid = d["id"] - if startswith(mid, "UUID:") - mid = UUID(mid[6:end]) - end - ParMatrixN(dtype, d["ws"], d["wo"], d["is"], d["io"], d["to"], d["ts"], mid) -end - -function distribute(A::ParMatrixN{N,M,O,T}, dims_in, comm::MPI.Comm = MPI.COMM_WORLD) where {N,M,O,T} - - @assert length(dims_in) == length(A.input_shape) - - comm_cart = MPI.Cart_create(comm, dims_in) - coords = MPI.Cart_coords(comm_cart) - - # TODO: Also assert comm size and dims_in product - - combined_tuples = tuple(A.input_order..., A.weight_order..., A.target_order...) - count_occurrences = (element_to_count) -> sum(element == element_to_count for element in combined_tuples) - - new_input_shape = collect(A.input_shape) - new_target_shape = collect(A.target_shape) - new_weight_shape = collect(A.weight_shape) - - for (i, dim) in enumerate(A.input_order) - dist_across = dims_in[dim] - if count_occurrences(dim) == 2 - # Do not distribute across the dimenions on which the convolution is performed - @assert dist_across == 1 - end - - # TODO: For now, only support perfect distribution - - @assert A.input_shape[i] % dist_across == 0 - new_input_shape[i] = A.input_shape[i] ÷ dist_across - - for (j, dim_j) in enumerate(A.weight_order) - if dim_j == dim - new_weight_shape[j] = A.weight_shape[j] ÷ dist_across - break - end - end - - for (j, dim_j) in enumerate(A.target_order) - if dim_j == dim - new_target_shape[j] = A.target_shape[j] ÷ dist_across - break - end - end - end - - return MPI.Comm_size(comm) == 1 ? A : ParMatrixN(T, A.weight_order, tuple(new_weight_shape...), A.input_order, tuple(new_input_shape...), A.target_order, tuple(new_target_shape...), "$(A.id):($(join(coords, ',')))") -end diff --git a/src/ParMatrixN.jl b/src/ParMatrixN.jl new file mode 100644 index 0000000..2c3ab80 --- /dev/null +++ b/src/ParMatrixN.jl @@ -0,0 +1,130 @@ +export ParMatrixN + +using OMEinsum + +""" +Dense N dimensional matrix operator. +""" +struct ParMatrixN{N,M,O,T} <: ParLinearOperator{T,T,Parametric,External} + weight_order::Tuple{Vararg{Int,N}} + weight_shape::Tuple{Vararg{Int,N}} + + input_order::Tuple{Vararg{Int,M}} + input_shape::Tuple{Vararg{Int,M}} + + target_order::Tuple{Vararg{Int,O}} + target_shape::Tuple{Vararg{Int,O}} + id::Any + + ParMatrixN(T::DataType, wo::Tuple{Vararg{Int,N}}, ws::Tuple{Vararg{Int,N}}, io::Tuple{Vararg{Int,M}}, is::Tuple{Vararg{Int,M}}, to::Tuple{Vararg{Int,O}}, ts::Tuple{Vararg{Int,O}}, id) where {N, M, O} = new{N,M,O,T}(wo, ws, io, is, to, ts, id) + ParMatrixN(wo::Tuple{Vararg{Int,N}}, ws::Tuple{Vararg{Int,N}}, io::Tuple{Vararg{Int,M}}, is::Tuple{Vararg{Int,M}}, to::Tuple{Vararg{Int,O}}, ts::Tuple{Vararg{Int,O}}, id) where {N, M, O} = new{N,M,O,Float64}(wo, ws, io, is, to, ts, id) + ParMatrixN(T::DataType, wo::Tuple{Vararg{Int,N}}, ws::Tuple{Vararg{Int,N}}, io::Tuple{Vararg{Int,M}}, is::Tuple{Vararg{Int,M}}, to::Tuple{Vararg{Int,O}}, ts::Tuple{Vararg{Int,O}}) where {N, M, O} = new{N,M,O,T}(wo, ws, io, is, to, ts, uuid4(Random.GLOBAL_RNG)) + ParMatrixN(wo::Tuple{Vararg{Int,N}}, ws::Tuple{Vararg{Int,N}}, io::Tuple{Vararg{Int,M}}, is::Tuple{Vararg{Int,M}}, to::Tuple{Vararg{Int,O}}, ts::Tuple{Vararg{Int,O}}) where {N, M, O} = new{N,M,O,Float64}(wo, ws, io, is, to, ts, uuid4(Random.GLOBAL_RNG)) +end + +Domain(A::ParMatrixN) = prod(A.input_shape) +Range(A::ParMatrixN) = prod(A.target_shape) + +# TODO: Remove seeds + +function init!(A::ParMatrixN{N,M,O,T}, d::Parameters) where {N,M,O,T<:Real} + Random.seed!(1234) + d[A] = rand(T, A.weight_shape...) ./ convert(T, sqrt(prod(A.weight_shape))) +end + +function init!(A::ParMatrixN{N,M,O,T}, d::Parameters) where {N,M,O,T<:Complex} + Random.seed!(1234) + d[A] = rand(T, A.weight_shape...) ./ convert(real(T), sqrt(prod(A.weight_shape))) +end + +# TODO: Add rest of the functionality and abstract usage of einsum to another controller + +(A::ParParameterized{T,T,Linear,ParMatrixN{N,M,O,T},V})(x::X) where {N,M,O,T,V,X<:AbstractVector{T}} = vec(einsum(EinCode((A.op.weight_order,A.op.input_order),A.op.target_order),(A.params,reshape(x, A.op.input_shape)))) +# (A::ParParameterized{T,T,Linear,ParMatrixN{N,M,O,T},V})(x::X) where {N,M,O,T,V,X<:AbstractVector{T}} = vec(einsum(EinCode((A.op.weight_order,A.op.input_order),A.op.target_order),(A.params |> cpu,reshape(x, A.op.input_shape) |> cpu))) |> gpu +# (A::ParParameterized{T,T,Linear,ParMatrixN{N,M,O,T},V})(x::X) where {N,M,O,T,V,X<:AbstractMatrix{T}} = A.params*x +# (A::ParParameterized{T,T,Linear,ParAdjoint{T,T,Parametric,ParMatrixN{N,M,O,T}},V})(x::X) where {N,M,O,T,V,X<:AbstractVector{T}} = A.params[A.op.op]'*x +# (A::ParParameterized{T,T,Linear,ParAdjoint{T,T,Parametric,ParMatrixN{N,M,O,T}},V})(x::X) where {N,M,O,T,V,X<:AbstractMatrix{T}} = A.params[A.op.op]'*x +# *(x::X, A::ParParameterized{T,T,Linear,ParMatrixN{N,M,O,T},V}) where {N,M,O,T,V,X<:AbstractVector{T}} = x*A.params +# *(x::X, A::ParParameterized{T,T,Linear,ParMatrixN{N,M,O,T},V}) where {N,M,O,T,V,X<:AbstractMatrix{T}} = x*A.params +# *(x::X, A::ParParameterized{T,T,Linear,ParAdjoint{T,T,Parametric,ParMatrixN{N,M,O,T}},V}) where {N,M,O,T,V,X<:AbstractVector{T}} = x*A.params[A.op.op]' +# *(x::X, A::ParParameterized{T,T,Linear,ParAdjoint{T,T,Parametric,ParMatrixN{N,M,O,T}},V}) where {N,M,O,T,V,X<:AbstractMatrix{T}} = x*A.params[A.op.op]' + +function to_Dict(A::ParMatrixN{N,M,O,T}) where {N,M,O,T} + rv = Dict{String, Any}( + "type" => "ParMatrixN", + "T" => string(T), + "ws" => A.weight_shape, + "wo" => A.weight_order, + "is" => A.input_shape, + "io" => A.input_order, + "to" => A.target_order, + "ts" => A.target_shape, + ) + if typeof(A.id) == String + rv["id"] = A.id + elseif typeof(A.id) == UUID + rv["id"] = "UUID:$(string(A.id))" + else + throw(ParException("I don't know how to encode id of type $(typeof(A.id))")) + end + rv +end + +function from_Dict(::Type{ParMatrixN}, d) + ts = d["T"] + if !haskey(Data_TYPES, ts) + throw(ParException("unknown data type `$ts`")) + end + dtype = Data_TYPES[ts] + mid = d["id"] + if startswith(mid, "UUID:") + mid = UUID(mid[6:end]) + end + ParMatrixN(dtype, d["ws"], d["wo"], d["is"], d["io"], d["to"], d["ts"], mid) +end + +function distribute(A::ParMatrixN{N,M,O,T}, dims_in, comm::MPI.Comm = MPI.COMM_WORLD) where {N,M,O,T} + # TODO: Rethink how to repartition this or completely rewrite this operator somehow (basically what distdl is doing?) + @assert length(dims_in) == length(A.input_shape) + + comm_cart = MPI.Cart_create(comm, dims_in) + coords = MPI.Cart_coords(comm_cart) + + # TODO: Also assert comm size and dims_in product + + combined_tuples = tuple(A.input_order..., A.weight_order..., A.target_order...) + count_occurrences = (element_to_count) -> sum(element == element_to_count for element in combined_tuples) + + new_input_shape = collect(A.input_shape) + new_target_shape = collect(A.target_shape) + new_weight_shape = collect(A.weight_shape) + + for (i, dim) in enumerate(A.input_order) + dist_across = dims_in[dim] + if count_occurrences(dim) == 2 + # Do not distribute across the dimenions on which the convolution is performed + @assert dist_across == 1 + end + + # TODO: For now, only support perfect distribution + + @assert A.input_shape[i] % dist_across == 0 + new_input_shape[i] = A.input_shape[i] ÷ dist_across + + for (j, dim_j) in enumerate(A.weight_order) + if dim_j == dim + new_weight_shape[j] = A.weight_shape[j] ÷ dist_across + break + end + end + + for (j, dim_j) in enumerate(A.target_order) + if dim_j == dim + new_target_shape[j] = A.target_shape[j] ÷ dist_across + break + end + end + end + + return ParMatrixN(T, A.weight_order, tuple(new_weight_shape...), A.input_order, tuple(new_input_shape...), A.target_order, tuple(new_target_shape...), "$(A.id):($(join(coords, ',')))") +end diff --git a/src/ParReduce.jl b/src/ParReduce.jl index 4ddf97d..bc7fdc2 100644 --- a/src/ParReduce.jl +++ b/src/ParReduce.jl @@ -18,7 +18,8 @@ end function ChainRulesCore.rrule(A::ParReduce{T}, x::X) where {T,X<:AbstractVector{T}} op_out = A(x) function pullback(op) - return NoTangent(), A(op) + # println("Using Reduce on Vector ", size(op), " ", typeof(op), " ", eltype(op)) + return NoTangent(), op # TODO: Fix this end return op_out, pullback end diff --git a/src/ParametricOperators.jl b/src/ParametricOperators.jl index e197825..d2079d1 100644 --- a/src/ParametricOperators.jl +++ b/src/ParametricOperators.jl @@ -45,6 +45,7 @@ include("ParKron.jl") # Operator definitions include("ParMatrix.jl") +include("ParMatrixN.jl") include("ParDiagonal.jl") include("ParDFT.jl") include("ParRestriction.jl") @@ -52,4 +53,4 @@ include("ParRestriction.jl") # Operator serialization include("ASTSerialization.jl") -end \ No newline at end of file +end From b0da4c053d06254ee10356c926adb97ece2e9ddc Mon Sep 17 00:00:00 2001 From: Rex Arockiasamy Date: Wed, 25 Oct 2023 12:17:57 -0400 Subject: [PATCH 16/38] Hack for ParMatrixN --- Project.toml | 1 + src/ParMatrix.jl | 15 +++++++++++++++ src/ParMatrixN.jl | 46 ++++++++++++++++++++++++++++++++++++++++++++-- 3 files changed, 60 insertions(+), 2 deletions(-) diff --git a/Project.toml b/Project.toml index 258a0be..d7098dc 100644 --- a/Project.toml +++ b/Project.toml @@ -10,6 +10,7 @@ Combinatorics = "861a8166-3701-5b0c-9a16-15d98fcdc6aa" DataStructures = "864edb3b-99cc-5e75-8d2d-829cb0a9cfe8" Documenter = "e30172f5-a6a5-5a46-863b-614d45cd2de4" FFTW = "7a1cc6ca-52ef-59f5-83cd-3a7055c09341" +Flux = "587475ba-b771-5e3f-ad9e-33799f191a9c" GraphViz = "f526b714-d49f-11e8-06ff-31ed36ee7ee0" JSON = "682c06a0-de6a-54ab-a142-c8b1cf79cde6" LRUCache = "8ac3fa9e-de4c-5943-b1dc-09c6b5f20637" diff --git a/src/ParMatrix.jl b/src/ParMatrix.jl index d056890..820522c 100644 --- a/src/ParMatrix.jl +++ b/src/ParMatrix.jl @@ -22,6 +22,10 @@ complexity(A::ParMatrix{T}) where {T} = elementwise_multiplication_cost(T)*A.n*A function init!(A::ParMatrix{T}, d::Parameters) where {T<:Real} + if A.n == 1 + d[A] = zeros(T, A.m, A.n) + return + end # G = zeros(A.n, A.m) # G[1, :] = [1, 2] # G[2, :] = [3, 4] @@ -44,6 +48,10 @@ end # TODO: Remove seeds. Currently exists to match implementation to Francis's FNO function init!(A::ParMatrix{T}, d::Parameters) where {T<:Complex} + if A.n == 1 + d[A] = zeros(T, A.m, A.n) + return + end Random.seed!(1234) d[A] = rand(T, A.n, A.m)/convert(real(T), sqrt(A.m*A.n)) d[A] = permutedims(d[A], [2, 1]) @@ -58,6 +66,13 @@ end *(x::X, A::ParParameterized{T,T,Linear,ParAdjoint{T,T,Parametric,ParMatrix{T}},V}) where {T,V,X<:AbstractVector{T}} = x*A.params[A.op.op]' *(x::X, A::ParParameterized{T,T,Linear,ParAdjoint{T,T,Parametric,ParMatrix{T}},V}) where {T,V,X<:AbstractMatrix{T}} = x*A.params[A.op.op]' ++(x::X, A::ParParameterized{T,T,Linear,ParMatrix{T},V}) where {T,V,X<:AbstractVector{T}} = x.+A.params ++(x::X, A::ParParameterized{T,T,Linear,ParMatrix{T},V}) where {T,V,X<:AbstractArray{T}} = x.+A.params ++(x::X, A::ParParameterized{T,T,Linear,ParMatrix{T},V}) where {T,V,X<:AbstractMatrix{T}} = x.+A.params ++(x::X, A::ParParameterized{T,T,Linear,ParAdjoint{T,T,Parametric,ParMatrix{T}},V}) where {T,V,X<:AbstractVector{T}} = x+A.params[A.op.op]' ++(x::X, A::ParParameterized{T,T,Linear,ParAdjoint{T,T,Parametric,ParMatrix{T}},V}) where {T,V,X<:AbstractArray{T}} = x+A.params[A.op.op]' ++(x::X, A::ParParameterized{T,T,Linear,ParAdjoint{T,T,Parametric,ParMatrix{T}},V}) where {T,V,X<:AbstractMatrix{T}} = x+A.params[A.op.op]' + function to_Dict(A::ParMatrix{T}) where {T} rv = Dict{String, Any}( "type" => "ParMatrix", diff --git a/src/ParMatrixN.jl b/src/ParMatrixN.jl index 2c3ab80..65e42d9 100644 --- a/src/ParMatrixN.jl +++ b/src/ParMatrixN.jl @@ -1,6 +1,7 @@ export ParMatrixN using OMEinsum +using Flux """ Dense N dimensional matrix operator. @@ -37,9 +38,50 @@ function init!(A::ParMatrixN{N,M,O,T}, d::Parameters) where {N,M,O,T<:Complex} d[A] = rand(T, A.weight_shape...) ./ convert(real(T), sqrt(prod(A.weight_shape))) end -# TODO: Add rest of the functionality and abstract usage of einsum to another controller +# TODO: Add rest of the functionality and abstract usage of OMEinsum to another controller ? + +function (A::ParParameterized{T,T,Linear,ParMatrixN{N,M,O,T},V})(x::X) where {N,M,O,T,V,X<:AbstractMatrix{T}} + # Hacky batched mul for Just ML4Seismic + b = size(x)[2] + oc = A.op.weight_shape[1] + ic = A.op.weight_shape[2] + nx = A.op.weight_shape[3] + ny = A.op.weight_shape[4] + nt = A.op.weight_shape[5] + + # input from ixytb -> bi(xyt) + input = reshape(x, (A.op.input_shape..., b)) + input = permutedims(input, [5,1,2,3,4]) + input = reshape(input, b, ic, :) + + # params from oixyt -> io(xyt) + params = permutedims(A.params, [2,1,3,4,5]) + params = reshape(params, ic, oc, :) + + # output from bo(xyt) -> (oxyt)b + output = batched_mul(input, params) + output = reshape(output, b, oc, nx, ny, nt) + output = permutedims(output, [2,3,4,5,1]) + output = reshape(output, :, b) + + return output +end + +# function (A::ParParameterized{T,T,Linear,ParMatrixN{N,M,O,T},V})(x::X) where {N,M,O,T,V,X<:AbstractMatrix{T}} +# # GPU supported batched mult +# b = size(x)[2] +# nd = maximum([A.op.input_order..., A.op.weight_order...]) + 1 + +# io = (A.op.input_order..., nd) +# wo = A.op.weight_order +# to = (A.op.target_order..., nd) + +# is = (A.op.input_shape..., b) + +# return reshape(einsum(EinCode((wo,io),to),(A.params |> cpu,reshape(x, is) |> cpu)), (:, b)) |> gpu +# end -(A::ParParameterized{T,T,Linear,ParMatrixN{N,M,O,T},V})(x::X) where {N,M,O,T,V,X<:AbstractVector{T}} = vec(einsum(EinCode((A.op.weight_order,A.op.input_order),A.op.target_order),(A.params,reshape(x, A.op.input_shape)))) +# (A::ParParameterized{T,T,Linear,ParMatrixN{N,M,O,T},V})(x::X) where {N,M,O,T,V,X<:AbstractVector{T}} = vec(einsum(EinCode((A.op.weight_order,A.op.input_order),A.op.target_order),(A.params,reshape(x, A.op.input_shape)))) # (A::ParParameterized{T,T,Linear,ParMatrixN{N,M,O,T},V})(x::X) where {N,M,O,T,V,X<:AbstractVector{T}} = vec(einsum(EinCode((A.op.weight_order,A.op.input_order),A.op.target_order),(A.params |> cpu,reshape(x, A.op.input_shape) |> cpu))) |> gpu # (A::ParParameterized{T,T,Linear,ParMatrixN{N,M,O,T},V})(x::X) where {N,M,O,T,V,X<:AbstractMatrix{T}} = A.params*x # (A::ParParameterized{T,T,Linear,ParAdjoint{T,T,Parametric,ParMatrixN{N,M,O,T}},V})(x::X) where {N,M,O,T,V,X<:AbstractVector{T}} = A.params[A.op.op]'*x From 0bcd47f65c74b9f1790130104dc6c89bc7761303 Mon Sep 17 00:00:00 2001 From: turquoisedragon2926 Date: Wed, 25 Oct 2023 17:24:01 -0400 Subject: [PATCH 17/38] ParBroadcasted --- src/ParBroadcasted.jl | 3 ++- 1 file changed, 2 insertions(+), 1 deletion(-) diff --git a/src/ParBroadcasted.jl b/src/ParBroadcasted.jl index 346d630..9919fa5 100644 --- a/src/ParBroadcasted.jl +++ b/src/ParBroadcasted.jl @@ -4,7 +4,7 @@ struct ParBroadcasted{D,R,L,P,F} <: ParOperator{D,R,L,P,Internal} op::F comm::MPI.Comm root::Int - ParBroadcasted(op, comm, root::Int = 0) = new{DDT(op),RDT(op),linearity(op),parametricity(op),typeof(op)}(op, comm, root) + ParBroadcasted(op, comm::Any = MPI.COMM_WORLD, root::Int = 0) = new{DDT(op),RDT(op),linearity(op),parametricity(op),typeof(op)}(op, comm, root) end bcasted(A::ParOperator{D,R,L,P,External}, comm = MPI.COMM_WORLD, root = 0) where {D,R,L,P} = @@ -33,6 +33,7 @@ end (A::ParBroadcasted{D,R,L,<:Applicable,F})(x::X) where {D,R,L,F,X<:AbstractVector{D}} = A.op(x) (A::ParBroadcasted{D,R,L,<:Applicable,F})(x::X) where {D,R,L,F,X<:AbstractMatrix{D}} = A.op(x) *(x::X, A::ParBroadcasted{D,R,Linear,<:Applicable,F}) where {D,R,F,X<:AbstractMatrix{D}} = x*A.op ++(x::X, A::ParBroadcasted{D,R,Linear,<:Applicable,F}) where {D,R,F,X<:AbstractMatrix{D}} = x+A.op function ChainRulesCore.rrule(A::ParBroadcasted{D,R,L,Parametric,F}, params) where {D,R,L,F} op_out = A(params) From 3a2c2aef44775f1cf786ce6dc032b95b26e5b902 Mon Sep 17 00:00:00 2001 From: Rex Arockiasamy Date: Fri, 27 Oct 2023 02:30:08 -0400 Subject: [PATCH 18/38] Lots of hacks for GPU --- src/ParBroadcasted.jl | 4 ++-- src/ParMatrixN.jl | 2 +- src/ParReduce.jl | 2 +- src/ParRepartition.jl | 4 ++-- 4 files changed, 6 insertions(+), 6 deletions(-) diff --git a/src/ParBroadcasted.jl b/src/ParBroadcasted.jl index 9919fa5..c556328 100644 --- a/src/ParBroadcasted.jl +++ b/src/ParBroadcasted.jl @@ -38,10 +38,10 @@ end function ChainRulesCore.rrule(A::ParBroadcasted{D,R,L,Parametric,F}, params) where {D,R,L,F} op_out = A(params) function pullback(op) - θ_global = MPI.Reduce(op.op.params, MPI.SUM, A.root, A.comm) + θ_global = MPI.Reduce(op.op.params |> cpu, MPI.SUM, A.root, A.comm) if MPI.Comm_rank(A.comm) == A.root - return NoTangent(), Dict(A.op=>θ_global) + return NoTangent(), Dict(A.op=>(θ_global |> gpu)) else return NoTangent(), NoTangent() end diff --git a/src/ParMatrixN.jl b/src/ParMatrixN.jl index 65e42d9..e7b5cf9 100644 --- a/src/ParMatrixN.jl +++ b/src/ParMatrixN.jl @@ -1,7 +1,7 @@ export ParMatrixN using OMEinsum -using Flux +using Flux:batched_mul """ Dense N dimensional matrix operator. diff --git a/src/ParReduce.jl b/src/ParReduce.jl index bc7fdc2..d8c2c4c 100644 --- a/src/ParReduce.jl +++ b/src/ParReduce.jl @@ -27,7 +27,7 @@ end function ChainRulesCore.rrule(A::ParReduce{T}, x::X) where {T,X<:AbstractArray{T}} op_out = A(x) function pullback(op) - return NoTangent(), A(op) + return NoTangent(), A(op |> cpu) |> gpu end return op_out, pullback end diff --git a/src/ParRepartition.jl b/src/ParRepartition.jl index 24db1ef..f0f07b9 100644 --- a/src/ParRepartition.jl +++ b/src/ParRepartition.jl @@ -7,8 +7,8 @@ mutable struct ParRepartition{T,N} <: ParLinearOperator{T,T,NonParametric,Extern global_size::NTuple{N, Integer} local_size_in::NTuple{N, Integer} local_size_out::NTuple{N, Integer} - send_data::OrderedDict{Integer, Tuple{NTuple{N, UnitRange{Integer}}, Option{Vector{T}}}} - recv_data::OrderedDict{Integer, Tuple{NTuple{N, UnitRange{Integer}}, Option{Vector{T}}}} + send_data::OrderedDict{Int32, Tuple{NTuple{N, UnitRange{Int32}}, Option{Vector{T}}}} + recv_data::OrderedDict{Int32, Tuple{NTuple{N, UnitRange{Int32}}, Option{Vector{T}}}} batch_size::Option{Integer} function ParRepartition(T, comm_in, comm_out, global_size) From 587d4d4ec7478b6539832aa8cbb0429089a0471c Mon Sep 17 00:00:00 2001 From: Rex Arockiasamy Date: Fri, 27 Oct 2023 21:45:43 -0400 Subject: [PATCH 19/38] hack support for 2D and 3D --- src/ParMatrixN.jl | 32 ++++++++++++++++++++++++++++++-- 1 file changed, 30 insertions(+), 2 deletions(-) diff --git a/src/ParMatrixN.jl b/src/ParMatrixN.jl index e7b5cf9..276d503 100644 --- a/src/ParMatrixN.jl +++ b/src/ParMatrixN.jl @@ -40,10 +40,38 @@ end # TODO: Add rest of the functionality and abstract usage of OMEinsum to another controller ? -function (A::ParParameterized{T,T,Linear,ParMatrixN{N,M,O,T},V})(x::X) where {N,M,O,T,V,X<:AbstractMatrix{T}} +function (A::ParParameterized{T,T,Linear,ParMatrixN{6,M,O,T},V})(x::X) where {M,O,T,V,X<:AbstractMatrix{T}} # Hacky batched mul for Just ML4Seismic b = size(x)[2] - oc = A.op.weight_shape[1] + oc = A.op.weight_shape[1] + ic = A.op.weight_shape[2] + nx = A.op.weight_shape[3] + ny = A.op.weight_shape[4] + nz = A.op.weight_shape[5] + nt = A.op.weight_shape[6] + + # input from ixyztb -> bi(xyzt) + input = reshape(x, (A.op.input_shape..., b)) + input = permutedims(input, [6,1,2,3,4,5]) + input = reshape(input, b, ic, :) + + # params from oixyzt -> io(xyzt) + params = permutedims(A.params, [2,1,3,4,5,6]) + params = reshape(params, ic, oc, :) + + # output from bo(xyzt) -> (oxyzt)b + output = batched_mul(input, params) + output = reshape(output, b, oc, nx, ny, nz, nt) + output = permutedims(output, [2,3,4,5,6,1]) + output = reshape(output, :, b) + + return output +end + +function (A::ParParameterized{T,T,Linear,ParMatrixN{5,M,O,T},V})(x::X) where {M,O,T,V,X<:AbstractMatrix{T}} + # Hacky batched mul for Just ML4Seismic + b = size(x)[2] + oc = A.op.weight_shape[1] ic = A.op.weight_shape[2] nx = A.op.weight_shape[3] ny = A.op.weight_shape[4] From 018b36dd25ecc8191eb7b247d812a79da59504e9 Mon Sep 17 00:00:00 2001 From: turquoisedragon2926 Date: Sun, 5 Nov 2023 18:18:54 -0500 Subject: [PATCH 20/38] test print --- src/ParCommon.jl | 1 + 1 file changed, 1 insertion(+) diff --git a/src/ParCommon.jl b/src/ParCommon.jl index 869a7b7..bbd3f7c 100644 --- a/src/ParCommon.jl +++ b/src/ParCommon.jl @@ -66,6 +66,7 @@ end function rotate_dims_batched(x, rot) n = length(size(x)) perm = [circshift(collect(1:n-1), rot)..., n] + println(size(x), perm) return permutedims(x, perm) end From 268b4fc05d7d1212a1de8f91367e947c88acf9c4 Mon Sep 17 00:00:00 2001 From: turquoisedragon2926 Date: Sun, 5 Nov 2023 18:33:11 -0500 Subject: [PATCH 21/38] remove print --- src/ParCommon.jl | 1 - 1 file changed, 1 deletion(-) diff --git a/src/ParCommon.jl b/src/ParCommon.jl index bbd3f7c..869a7b7 100644 --- a/src/ParCommon.jl +++ b/src/ParCommon.jl @@ -66,7 +66,6 @@ end function rotate_dims_batched(x, rot) n = length(size(x)) perm = [circshift(collect(1:n-1), rot)..., n] - println(size(x), perm) return permutedims(x, perm) end From 34eb7ed75831b96a88ac34f6df6b4d7b0db3e0c9 Mon Sep 17 00:00:00 2001 From: turquoisedragon2926 Date: Sun, 5 Nov 2023 22:20:32 -0500 Subject: [PATCH 22/38] logging --- src/ParCommon.jl | 2 ++ src/ParCompose.jl | 3 +++ 2 files changed, 5 insertions(+) diff --git a/src/ParCommon.jl b/src/ParCommon.jl index 869a7b7..e834b58 100644 --- a/src/ParCommon.jl +++ b/src/ParCommon.jl @@ -66,6 +66,8 @@ end function rotate_dims_batched(x, rot) n = length(size(x)) perm = [circshift(collect(1:n-1), rot)..., n] + rank = MPI.Comm_rank(MPI.COMM_WORLD) + rank == 0 && println(size(x), perm) return permutedims(x, perm) end diff --git a/src/ParCompose.jl b/src/ParCompose.jl index ed3365b..5d7df09 100644 --- a/src/ParCompose.jl +++ b/src/ParCompose.jl @@ -56,6 +56,9 @@ end function (A::ParCompose{D,R,L,<:Applicable,F,N})(x::X) where {D,R,L,F,N,X<:AbstractMatrix{D}} for i in 1:N + rank = MPI.Comm_rank(MPI.COMM_WORLD) + MPI.Barrier(MPI.COMM_WORLD) + rank == 0 && println(typeof(A.ops[N-i+1]), size(x)) x = A.ops[N-i+1](x) end return x From a39841a4c1d53ccf320a2ebdbc621dffaab69ea0 Mon Sep 17 00:00:00 2001 From: turquoisedragon2926 Date: Sun, 5 Nov 2023 22:42:57 -0500 Subject: [PATCH 23/38] try fix --- src/ParCommon.jl | 3 ++- src/ParCompose.jl | 2 +- 2 files changed, 3 insertions(+), 2 deletions(-) diff --git a/src/ParCommon.jl b/src/ParCommon.jl index e834b58..5d2ddd7 100644 --- a/src/ParCommon.jl +++ b/src/ParCommon.jl @@ -67,7 +67,8 @@ function rotate_dims_batched(x, rot) n = length(size(x)) perm = [circshift(collect(1:n-1), rot)..., n] rank = MPI.Comm_rank(MPI.COMM_WORLD) - rank == 0 && println(size(x), perm) + rank == 1 && println(size(x), perm) + 0 in size(x) && return permutedims(x |> cpu, perm) |> gpu return permutedims(x, perm) end diff --git a/src/ParCompose.jl b/src/ParCompose.jl index 5d7df09..d39738e 100644 --- a/src/ParCompose.jl +++ b/src/ParCompose.jl @@ -58,7 +58,7 @@ function (A::ParCompose{D,R,L,<:Applicable,F,N})(x::X) where {D,R,L,F,N,X<:Abstr for i in 1:N rank = MPI.Comm_rank(MPI.COMM_WORLD) MPI.Barrier(MPI.COMM_WORLD) - rank == 0 && println(typeof(A.ops[N-i+1]), size(x)) + rank == 1 && println(typeof(A.ops[N-i+1]), size(x)) x = A.ops[N-i+1](x) end return x From ce56ef1dfb75b243df6ebd1fbb17514a07a213c5 Mon Sep 17 00:00:00 2001 From: turquoisedragon2926 Date: Sun, 5 Nov 2023 22:57:52 -0500 Subject: [PATCH 24/38] fft cuda fix? --- src/ParDFT.jl | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/src/ParDFT.jl b/src/ParDFT.jl index 46f2549..7837827 100644 --- a/src/ParDFT.jl +++ b/src/ParDFT.jl @@ -23,7 +23,7 @@ Range(A::ParDFT) = A.m complexity(A::ParDFT{D,R}) where {D,R} = elementwise_multiplication_cost(R)*A.n*log2(A.n) -(A::ParDFT{D,R})(x::X) where {D<:Complex,R,X<:AbstractMatrix{D}} = fft(x, 1) +(A::ParDFT{D,R})(x::X) where {D<:Complex,R,X<:AbstractMatrix{D}} = 0 in size(x) ? x : fft(x, 1) (A::ParDFT{D,R})(x::X) where {D<:Real,R,X<:AbstractMatrix{D}} = rfft(x, 1) (A::ParDFT{D,R})(x::X) where {D,R,X<:AbstractVector{D}} = vec(A(reshape(x, length(x), 1))) From 0e088956b72b1344fa594ce7b91997380bdb0285 Mon Sep 17 00:00:00 2001 From: turquoisedragon2926 Date: Sun, 5 Nov 2023 23:01:12 -0500 Subject: [PATCH 25/38] ifft oops --- src/ParDFT.jl | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/src/ParDFT.jl b/src/ParDFT.jl index 7837827..aa0b940 100644 --- a/src/ParDFT.jl +++ b/src/ParDFT.jl @@ -27,7 +27,7 @@ complexity(A::ParDFT{D,R}) where {D,R} = elementwise_multiplication_cost(R)*A.n* (A::ParDFT{D,R})(x::X) where {D<:Real,R,X<:AbstractMatrix{D}} = rfft(x, 1) (A::ParDFT{D,R})(x::X) where {D,R,X<:AbstractVector{D}} = vec(A(reshape(x, length(x), 1))) -(A::ParAdjoint{D,R,NonParametric,ParDFT{D,R}})(x::X) where {D<:Complex,R,X<:AbstractMatrix{R}} = ifft(x, 1) +(A::ParAdjoint{D,R,NonParametric,ParDFT{D,R}})(x::X) where {D<:Complex,R,X<:AbstractMatrix{R}} = 0 in size(x) ? x : ifft(x, 1) (A::ParAdjoint{D,R,NonParametric,ParDFT{D,R}})(x::X) where {D<:Real,R,X<:AbstractMatrix{R}} = irfft(x, A.op.n, 1) (A::ParAdjoint{D,R,NonParametric,ParDFT{D,R}})(x::X) where {D,R,X<:AbstractVector{R}} = vec(A(reshape(x, length(x), 1))) From 5c63ba7473e2c5abd73eaf3d3e63c6ef085afef6 Mon Sep 17 00:00:00 2001 From: turquoisedragon2926 Date: Sun, 5 Nov 2023 23:04:34 -0500 Subject: [PATCH 26/38] gpu for permute fix --- src/ParCommon.jl | 2 -- 1 file changed, 2 deletions(-) diff --git a/src/ParCommon.jl b/src/ParCommon.jl index 5d2ddd7..1e732ed 100644 --- a/src/ParCommon.jl +++ b/src/ParCommon.jl @@ -66,8 +66,6 @@ end function rotate_dims_batched(x, rot) n = length(size(x)) perm = [circshift(collect(1:n-1), rot)..., n] - rank = MPI.Comm_rank(MPI.COMM_WORLD) - rank == 1 && println(size(x), perm) 0 in size(x) && return permutedims(x |> cpu, perm) |> gpu return permutedims(x, perm) end From 734c3b4ba7a74e2c604f9f1e049a1855356dfd93 Mon Sep 17 00:00:00 2001 From: turquoisedragon2926 Date: Sun, 5 Nov 2023 23:05:30 -0500 Subject: [PATCH 27/38] remove prints --- src/ParCompose.jl | 3 --- 1 file changed, 3 deletions(-) diff --git a/src/ParCompose.jl b/src/ParCompose.jl index d39738e..ed3365b 100644 --- a/src/ParCompose.jl +++ b/src/ParCompose.jl @@ -56,9 +56,6 @@ end function (A::ParCompose{D,R,L,<:Applicable,F,N})(x::X) where {D,R,L,F,N,X<:AbstractMatrix{D}} for i in 1:N - rank = MPI.Comm_rank(MPI.COMM_WORLD) - MPI.Barrier(MPI.COMM_WORLD) - rank == 1 && println(typeof(A.ops[N-i+1]), size(x)) x = A.ops[N-i+1](x) end return x From 3b3cb8d060f54e7ad61f17488c8ada6b9b1a2a23 Mon Sep 17 00:00:00 2001 From: turquoisedragon2926 Date: Tue, 28 Nov 2023 12:15:06 -0500 Subject: [PATCH 28/38] fpr -> for --- src/ParOperator.jl | 4 ++-- 1 file changed, 2 insertions(+), 2 deletions(-) diff --git a/src/ParOperator.jl b/src/ParOperator.jl index eb56ea3..e79dbca 100644 --- a/src/ParOperator.jl +++ b/src/ParOperator.jl @@ -132,7 +132,7 @@ const Parameters = Dict{<:ParOperator,Any} Move objects to cpu. """ cpu(x::CuArray{<:Number}) = Array(x) -cpu(x::Vector{CuArray}) = [cpu(y) fpr y in x] +cpu(x::Vector{CuArray}) = [cpu(y) for y in x] cpu(x::AbstractArray) = x cpu(x::Parameters) = Dict(k => cpu(v) for (k, v) in pairs(x)) @@ -141,7 +141,7 @@ if CUDA.functional() Move objects to gpu. """ gpu(x::AbstractArray{<:Number}) = CuArray(x) - gpu(x::Vector{<:AbstractArray}) = [gpu(y) fpr y in x] + gpu(x::Vector{<:AbstractArray}) = [gpu(y) for y in x] gpu(x::CuArray) = x gpu(x::Parameters) = Dict(k => gpu(v) for (k, v) in pairs(x)) end From 0c3254d1e9ecd28a1b7733ffaf8c3e6c1a423ff4 Mon Sep 17 00:00:00 2001 From: turquoisedragon2926 Date: Wed, 6 Dec 2023 03:12:45 -0500 Subject: [PATCH 29/38] broadcasting kron --- src/ParIdentity.jl | 2 +- src/ParKron.jl | 8 ++++++-- 2 files changed, 7 insertions(+), 3 deletions(-) diff --git a/src/ParIdentity.jl b/src/ParIdentity.jl index 23107a6..d93f99d 100644 --- a/src/ParIdentity.jl +++ b/src/ParIdentity.jl @@ -32,4 +32,4 @@ function from_Dict(::Type{ParIdentity}, d) ParIdentity(dtype, d["n"]) end -# kron(A::ParIdentity{T}, B::ParIdentity{T}) where {T} = ParIdentity(T,B.n*A.n) +kron(A::ParIdentity{T}, B::ParIdentity{T}) where {T} = ParIdentity(T,B.n*A.n) diff --git a/src/ParKron.jl b/src/ParKron.jl index 35366f0..057b4e3 100644 --- a/src/ParKron.jl +++ b/src/ParKron.jl @@ -80,9 +80,11 @@ end kron(A::ParLinearOperator, B::ParLinearOperator) = ParKron(A, B) kron(A::ParKron, B::ParLinearOperator) = ParKron(A.ops..., B) +kron(A::ParIdentity, B::ParKron) = ParKron(A, B) kron(A::ParLinearOperator, B::ParKron) = ParKron(A, B.ops...) -kron(A::ParKron, B::ParKron) = ParKron(A.ops..., B.ops...) +⊗(A::ParKron, B::ParKron) = ParKron(A.ops..., B.ops...) ⊗(A::ParLinearOperator, B::ParLinearOperator) = kron(A, B) +kron(A::ParKron, B::ParKron) = ParKron(A, B) Domain(A::ParSeparableOperator) = prod(map(Domain, children(A))) Range(A::ParSeparableOperator) = prod(map(Range, children(A))) @@ -266,6 +268,8 @@ function latex_string(A::ParKron{D,R,P,F,N}) where {D,R,P,F,N} return out end +rebuild(A::ParBroadcasted{D,R,L,Parametric,F}, cs) where {D,R,L,F<:ParKron} = rebuild(A.op, collect(map(c -> parametricity(c) == Parametric ? ParBroadcasted(c, A.comm, A.root) : c, children(cs[1])))) + """ Distributes Kronecker product over the given dimensions """ @@ -348,7 +352,7 @@ function distribute(A::ParKron, comm_in::MPI.Comm, comm_out::MPI.Comm, parent_co # rank == 0 && println("Actual: ", Range(Ai), "x", Domain(Ai)) - pushfirst!(ops, ParKron(idents_dim_lower..., ParBroadcasted(Ai, comm_i), idents_dim_upper...)) + pushfirst!(ops, ParKron(idents_dim_lower..., rebuild(ParBroadcasted(Ai, comm_i), [Ai]), idents_dim_upper...)) size_curr[d] = Range(Ai) comm_prev = comm_i From 3f6f343ff07e369be24cbc8b061153ec605914bb Mon Sep 17 00:00:00 2001 From: turquoisedragon2926 Date: Thu, 7 Dec 2023 16:45:08 -0500 Subject: [PATCH 30/38] removed rules --- src/ParKron.jl | 5 ++--- 1 file changed, 2 insertions(+), 3 deletions(-) diff --git a/src/ParKron.jl b/src/ParKron.jl index 057b4e3..e96c211 100644 --- a/src/ParKron.jl +++ b/src/ParKron.jl @@ -80,11 +80,9 @@ end kron(A::ParLinearOperator, B::ParLinearOperator) = ParKron(A, B) kron(A::ParKron, B::ParLinearOperator) = ParKron(A.ops..., B) -kron(A::ParIdentity, B::ParKron) = ParKron(A, B) kron(A::ParLinearOperator, B::ParKron) = ParKron(A, B.ops...) ⊗(A::ParKron, B::ParKron) = ParKron(A.ops..., B.ops...) ⊗(A::ParLinearOperator, B::ParLinearOperator) = kron(A, B) -kron(A::ParKron, B::ParKron) = ParKron(A, B) Domain(A::ParSeparableOperator) = prod(map(Domain, children(A))) Range(A::ParSeparableOperator) = prod(map(Range, children(A))) @@ -331,7 +329,7 @@ function distribute(A::ParKron, comm_in::MPI.Comm, comm_out::MPI.Comm, parent_co # Create repartition operator if data is distributed differently than expected !isequal(dims_prev, dims_i) && pushfirst!(ops, ParRepartition(DDT(Ai), comm_prev, comm_i, tuple(size_curr...))) - + # !isequal(dims_prev, dims_i) && (MPI.Comm_rank(comm_in) == 0) && println("Pushing a repartition inside @ iteration ", i, " ", dims_prev, dims_i) # if MPI.Comm_rank(comm_in) == 0 # println(length(ops)) # end @@ -360,6 +358,7 @@ function distribute(A::ParKron, comm_in::MPI.Comm, comm_out::MPI.Comm, parent_co end !isequal(dims_prev, dims_out) && pushfirst!(ops, ParRepartition(RDT(A.ops[A.order[end]]), comm_prev, comm_out, tuple(size_curr...))) + # !isequal(dims_prev, dims_out) && (MPI.Comm_rank(comm_in) == 0) && println("Pushing a repartition outside") # for op in ops # if MPI.Comm_rank(comm_prev) == 0 From aae43c2c98dc771def54d634eee10fd918336428 Mon Sep 17 00:00:00 2001 From: turquoisedragon2926 Date: Thu, 7 Dec 2023 16:49:15 -0500 Subject: [PATCH 31/38] straightforward order of application for krons --- src/ParKron.jl | 9 +++++++++ 1 file changed, 9 insertions(+) diff --git a/src/ParKron.jl b/src/ParKron.jl index e96c211..1894f06 100644 --- a/src/ParKron.jl +++ b/src/ParKron.jl @@ -25,6 +25,15 @@ struct ParKron{D,R,P,F,N} <: ParSeparableOperator{D,R,P,Internal} end function ParKron(ops...) + # Brute force application from right to left because sometimes reordering + # causing more repartitions which are much more expensive as of now for desired applications + order = [i for i in reverse(1:length(ops))] + + D = DDT(ops[order[1]]) + R = RDT(ops[order[end]]) + P = foldl(promote_parametricity, map(parametricity, ops)) + + return new{D,R,P,typeof(ops),length(ops)}(ops, order) # Collect operators into a vector ops = collect(ops) From 6750ec91696d595bef5afccc8876e278fe2852aa Mon Sep 17 00:00:00 2001 From: turquoisedragon2926 Date: Thu, 7 Dec 2023 17:00:27 -0500 Subject: [PATCH 32/38] log repartitions --- src/ParKron.jl | 12 +++++++----- 1 file changed, 7 insertions(+), 5 deletions(-) diff --git a/src/ParKron.jl b/src/ParKron.jl index 1894f06..5518224 100644 --- a/src/ParKron.jl +++ b/src/ParKron.jl @@ -27,11 +27,13 @@ struct ParKron{D,R,P,F,N} <: ParSeparableOperator{D,R,P,Internal} function ParKron(ops...) # Brute force application from right to left because sometimes reordering # causing more repartitions which are much more expensive as of now for desired applications - order = [i for i in reverse(1:length(ops))] + # rn in the fno code the subtype computed here is always applied first, so no repartition. + # This now becomes necessary for example: we need to take RFFT before the identity. (could say identity is real to fix this as well) + # order = [i for i in reverse(1:length(ops))] - D = DDT(ops[order[1]]) - R = RDT(ops[order[end]]) - P = foldl(promote_parametricity, map(parametricity, ops)) + # D = DDT(ops[order[1]]) + # R = RDT(ops[order[end]]) + # P = foldl(promote_parametricity, map(parametricity, ops)) return new{D,R,P,typeof(ops),length(ops)}(ops, order) @@ -338,7 +340,7 @@ function distribute(A::ParKron, comm_in::MPI.Comm, comm_out::MPI.Comm, parent_co # Create repartition operator if data is distributed differently than expected !isequal(dims_prev, dims_i) && pushfirst!(ops, ParRepartition(DDT(Ai), comm_prev, comm_i, tuple(size_curr...))) - # !isequal(dims_prev, dims_i) && (MPI.Comm_rank(comm_in) == 0) && println("Pushing a repartition inside @ iteration ", i, " ", dims_prev, dims_i) + !isequal(dims_prev, dims_i) && (MPI.Comm_rank(comm_in) == 0) && println("Pushing a repartition inside @ iteration ", i, " ", dims_prev, dims_i) # if MPI.Comm_rank(comm_in) == 0 # println(length(ops)) # end From 8157c79637b5444206a3d1696e666d15ca7e86ad Mon Sep 17 00:00:00 2001 From: turquoisedragon2926 Date: Fri, 8 Dec 2023 02:18:10 -0500 Subject: [PATCH 33/38] bug fix --- src/ParKron.jl | 9 +-------- 1 file changed, 1 insertion(+), 8 deletions(-) diff --git a/src/ParKron.jl b/src/ParKron.jl index 5518224..256ebfe 100644 --- a/src/ParKron.jl +++ b/src/ParKron.jl @@ -28,14 +28,7 @@ struct ParKron{D,R,P,F,N} <: ParSeparableOperator{D,R,P,Internal} # Brute force application from right to left because sometimes reordering # causing more repartitions which are much more expensive as of now for desired applications # rn in the fno code the subtype computed here is always applied first, so no repartition. - # This now becomes necessary for example: we need to take RFFT before the identity. (could say identity is real to fix this as well) - # order = [i for i in reverse(1:length(ops))] - - # D = DDT(ops[order[1]]) - # R = RDT(ops[order[end]]) - # P = foldl(promote_parametricity, map(parametricity, ops)) - - return new{D,R,P,typeof(ops),length(ops)}(ops, order) + # for example: we need to take RFFT before the identity in fno # Collect operators into a vector ops = collect(ops) From 8f0a4aedeee105ba2420319931497164a26aa298 Mon Sep 17 00:00:00 2001 From: turquoisedragon2926 Date: Fri, 8 Dec 2023 02:26:51 -0500 Subject: [PATCH 34/38] for now --- src/ParIdentity.jl | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/src/ParIdentity.jl b/src/ParIdentity.jl index d93f99d..23107a6 100644 --- a/src/ParIdentity.jl +++ b/src/ParIdentity.jl @@ -32,4 +32,4 @@ function from_Dict(::Type{ParIdentity}, d) ParIdentity(dtype, d["n"]) end -kron(A::ParIdentity{T}, B::ParIdentity{T}) where {T} = ParIdentity(T,B.n*A.n) +# kron(A::ParIdentity{T}, B::ParIdentity{T}) where {T} = ParIdentity(T,B.n*A.n) From 3db66d192f3940e2f86053481540a2c85a85292a Mon Sep 17 00:00:00 2001 From: turquoisedragon2926 Date: Thu, 28 Dec 2023 01:51:02 -0500 Subject: [PATCH 35/38] less repartitions --- src/ParIdentity.jl | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/src/ParIdentity.jl b/src/ParIdentity.jl index 23107a6..d93f99d 100644 --- a/src/ParIdentity.jl +++ b/src/ParIdentity.jl @@ -32,4 +32,4 @@ function from_Dict(::Type{ParIdentity}, d) ParIdentity(dtype, d["n"]) end -# kron(A::ParIdentity{T}, B::ParIdentity{T}) where {T} = ParIdentity(T,B.n*A.n) +kron(A::ParIdentity{T}, B::ParIdentity{T}) where {T} = ParIdentity(T,B.n*A.n) From 79daf099c00386cd44081ab5be8aa7babfca44bf Mon Sep 17 00:00:00 2001 From: turquoisedragon2926 Date: Mon, 1 Jan 2024 12:03:55 -0500 Subject: [PATCH 36/38] add combined 2D --- src/ParMatrixN.jl | 25 +++++++++++++++++++++++++ 1 file changed, 25 insertions(+) diff --git a/src/ParMatrixN.jl b/src/ParMatrixN.jl index 276d503..4fab1a3 100644 --- a/src/ParMatrixN.jl +++ b/src/ParMatrixN.jl @@ -95,6 +95,31 @@ function (A::ParParameterized{T,T,Linear,ParMatrixN{5,M,O,T},V})(x::X) where {M, return output end +function (A::ParParameterized{T,T,Linear,ParMatrixN{4,M,O,T},V})(x::X) where {M,O,T,V,X<:AbstractMatrix{T}} + # Hacky batched mul for Just ML4Seismic + b = size(x)[2] + ic = A.op.weight_shape[1] + oc = A.op.weight_shape[2] + nt = A.op.weight_shape[3] + nxy = A.op.weight_shape[4] + + # input from it(xy)b -> bi(txy) + input = reshape(x, (A.op.input_shape..., b)) + input = permutedims(input, [4,1,2,3]) + input = reshape(input, b, ic, :) + + # params from iot(xy) -> io(txy) + params = reshape(A.params, ic, oc, :) + + # output from bo(txy) -> (otxy)b + output = batched_mul(input, params) + output = reshape(output, b, oc, nt, nxy) + output = permutedims(output, [2,3,4,1]) + output = reshape(output, :, b) + + return output +end + # function (A::ParParameterized{T,T,Linear,ParMatrixN{N,M,O,T},V})(x::X) where {N,M,O,T,V,X<:AbstractMatrix{T}} # # GPU supported batched mult # b = size(x)[2] From f6c8fe1243f91cc275d0af9ab9a9f8817a5a625d Mon Sep 17 00:00:00 2001 From: turquoisedragon2926 Date: Mon, 1 Jan 2024 20:30:28 -0500 Subject: [PATCH 37/38] mul --- src/ParMatrixN.jl | 55 ----------------------------------------------- 1 file changed, 55 deletions(-) diff --git a/src/ParMatrixN.jl b/src/ParMatrixN.jl index 4fab1a3..2daa752 100644 --- a/src/ParMatrixN.jl +++ b/src/ParMatrixN.jl @@ -40,61 +40,6 @@ end # TODO: Add rest of the functionality and abstract usage of OMEinsum to another controller ? -function (A::ParParameterized{T,T,Linear,ParMatrixN{6,M,O,T},V})(x::X) where {M,O,T,V,X<:AbstractMatrix{T}} - # Hacky batched mul for Just ML4Seismic - b = size(x)[2] - oc = A.op.weight_shape[1] - ic = A.op.weight_shape[2] - nx = A.op.weight_shape[3] - ny = A.op.weight_shape[4] - nz = A.op.weight_shape[5] - nt = A.op.weight_shape[6] - - # input from ixyztb -> bi(xyzt) - input = reshape(x, (A.op.input_shape..., b)) - input = permutedims(input, [6,1,2,3,4,5]) - input = reshape(input, b, ic, :) - - # params from oixyzt -> io(xyzt) - params = permutedims(A.params, [2,1,3,4,5,6]) - params = reshape(params, ic, oc, :) - - # output from bo(xyzt) -> (oxyzt)b - output = batched_mul(input, params) - output = reshape(output, b, oc, nx, ny, nz, nt) - output = permutedims(output, [2,3,4,5,6,1]) - output = reshape(output, :, b) - - return output -end - -function (A::ParParameterized{T,T,Linear,ParMatrixN{5,M,O,T},V})(x::X) where {M,O,T,V,X<:AbstractMatrix{T}} - # Hacky batched mul for Just ML4Seismic - b = size(x)[2] - oc = A.op.weight_shape[1] - ic = A.op.weight_shape[2] - nx = A.op.weight_shape[3] - ny = A.op.weight_shape[4] - nt = A.op.weight_shape[5] - - # input from ixytb -> bi(xyt) - input = reshape(x, (A.op.input_shape..., b)) - input = permutedims(input, [5,1,2,3,4]) - input = reshape(input, b, ic, :) - - # params from oixyt -> io(xyt) - params = permutedims(A.params, [2,1,3,4,5]) - params = reshape(params, ic, oc, :) - - # output from bo(xyt) -> (oxyt)b - output = batched_mul(input, params) - output = reshape(output, b, oc, nx, ny, nt) - output = permutedims(output, [2,3,4,5,1]) - output = reshape(output, :, b) - - return output -end - function (A::ParParameterized{T,T,Linear,ParMatrixN{4,M,O,T},V})(x::X) where {M,O,T,V,X<:AbstractMatrix{T}} # Hacky batched mul for Just ML4Seismic b = size(x)[2] From ae2718645a7bfb95c7143d0b24a0e4071947bdff Mon Sep 17 00:00:00 2001 From: turquoisedragon2926 Date: Fri, 2 Feb 2024 07:29:50 -0500 Subject: [PATCH 38/38] cpu temp fix --- src/ParBroadcasted.jl | 6 ++++-- src/ParCommon.jl | 2 +- src/ParOperator.jl | 12 ++++++++++-- src/ParReduce.jl | 3 ++- 4 files changed, 17 insertions(+), 6 deletions(-) diff --git a/src/ParBroadcasted.jl b/src/ParBroadcasted.jl index c556328..bf855a7 100644 --- a/src/ParBroadcasted.jl +++ b/src/ParBroadcasted.jl @@ -38,10 +38,12 @@ end function ChainRulesCore.rrule(A::ParBroadcasted{D,R,L,Parametric,F}, params) where {D,R,L,F} op_out = A(params) function pullback(op) - θ_global = MPI.Reduce(op.op.params |> cpu, MPI.SUM, A.root, A.comm) + # θ_global = MPI.Reduce(op.op.params |> cpu, MPI.SUM, A.root, A.comm) + θ_global = MPI.Reduce(op.op.params, MPI.SUM, A.root, A.comm) if MPI.Comm_rank(A.comm) == A.root - return NoTangent(), Dict(A.op=>(θ_global |> gpu)) + # return NoTangent(), Dict(A.op=>(θ_global |> gpu)) + return NoTangent(), Dict(A.op=>θ_global) else return NoTangent(), NoTangent() end diff --git a/src/ParCommon.jl b/src/ParCommon.jl index 1e732ed..2c2ba24 100644 --- a/src/ParCommon.jl +++ b/src/ParCommon.jl @@ -66,7 +66,7 @@ end function rotate_dims_batched(x, rot) n = length(size(x)) perm = [circshift(collect(1:n-1), rot)..., n] - 0 in size(x) && return permutedims(x |> cpu, perm) |> gpu + # 0 in size(x) && return permutedims(x |> cpu, perm) |> gpu return permutedims(x, perm) end diff --git a/src/ParOperator.jl b/src/ParOperator.jl index e79dbca..bcb238f 100644 --- a/src/ParOperator.jl +++ b/src/ParOperator.jl @@ -203,8 +203,16 @@ end Parameterize the given operator """ function (A::ParOperator{D,R,L,Parametric,Internal})(params) where {D,R,L} - # println("rbuh, ", Range(A), " x ", Domain(A)) - # println(length(children(A))) + # println(length(children(A)), " ITEMS TO PARAMETRIZE AND REBUILD OF: ", typeof(A)) + # for c in children(A) + # println("TYPE OF INPUT CHILD: ", typeof(c)) + # end + # nc = collect(map(c -> parametricity(c) == Parametric ? c(params) : c, children(A))) + # println(length(nc), " ITEMS HAVE BEEN PARAMETRIZED AND REBUILDED", ) + # for c in nc + # println("TYPE OF A CHILD: ", typeof(c)) + # end + # return rebuild(A, nc) return rebuild(A, collect(map(c -> parametricity(c) == Parametric ? c(params) : c, children(A)))) end diff --git a/src/ParReduce.jl b/src/ParReduce.jl index d8c2c4c..bc7858a 100644 --- a/src/ParReduce.jl +++ b/src/ParReduce.jl @@ -27,7 +27,8 @@ end function ChainRulesCore.rrule(A::ParReduce{T}, x::X) where {T,X<:AbstractArray{T}} op_out = A(x) function pullback(op) - return NoTangent(), A(op |> cpu) |> gpu + # return NoTangent(), A(op |> cpu) |> gpu + return NoTangent(), A(op) end return op_out, pullback end