From 609b2a1aa9ca72291337abf6fd13b2eba18b0c55 Mon Sep 17 00:00:00 2001
From: "C. Titus Brown" <titus@idyll.org>
Date: Sat, 11 Jan 2025 09:05:46 -0800
Subject: [PATCH] MRG: update to sourmash v4.8.13 (python package) (#583)

* print out sourmash version

* MRG: update to require sourmash v4.8.13

* upd
---
 environment.yml                 |  2 +-
 pyproject.toml                  |  2 +-
 src/python/tests/test_sketch.py | 12 ++----------
 3 files changed, 4 insertions(+), 12 deletions(-)

diff --git a/environment.yml b/environment.yml
index eb9f21a1..1033f0b9 100644
--- a/environment.yml
+++ b/environment.yml
@@ -4,7 +4,7 @@ channels:
     - bioconda
     - defaults
 dependencies:
-    - sourmash>=4.8.3,<5
+    - sourmash>=4.8.13,<5
     - pip
     - rust
     - maturin>=1,<2
diff --git a/pyproject.toml b/pyproject.toml
index b191c9f6..410b524a 100644
--- a/pyproject.toml
+++ b/pyproject.toml
@@ -9,7 +9,7 @@ classifiers = [
     "Programming Language :: Python :: Implementation :: CPython",
     "Programming Language :: Python :: Implementation :: PyPy",
     ]
-dependencies = ["sourmash>=4.8.10,<5"]
+dependencies = ["sourmash>=4.8.13,<5"]
 
 authors = [
   { name="N. Tessa Pierce-Ward", orcid="0000-0002-2942-5331" },
diff --git a/src/python/tests/test_sketch.py b/src/python/tests/test_sketch.py
index 7753e608..ac9aaed7 100644
--- a/src/python/tests/test_sketch.py
+++ b/src/python/tests/test_sketch.py
@@ -1438,16 +1438,8 @@ def test_manysketch_skipm2n3(runtmp, capfd):
     sigs = list(idx.signatures())
     print(sigs)
 
-    # add in a version check so this works under latest release AND latest
-    # dev.
-    ver = sourmash.version("sourmash")
-    major, minor, micro = map(int, ver.split(".")[:3])
-    assert major == 4
-    assert minor >= 8
-    if "dev" in ver:
-        assert len(sigs) == 6  # 3 dna, 3 skipmer.
-    else:
-        assert len(sigs) == 3  # 3 dna, 3 skipmer but not recognized yet.
+    # note: requires sourmash v4.8.13 or later.
+    assert len(sigs) == 6  # 3 dna, 3 skipmer.
 
     # check moltypes, etc!
     dna_md5sums = {