From 2b3b312025b46e728950c4e3dd476aaf1afdcfcf Mon Sep 17 00:00:00 2001 From: Jaysukh-409 Date: Mon, 16 Dec 2024 11:16:56 +0530 Subject: [PATCH 1/4] feat: add stats/base/dists/planck/mean --- .../stats/base/dists/planck/mean/README.md | 140 ++++++++++++++++++ .../dists/planck/mean/benchmark/benchmark.js | 52 +++++++ .../base/dists/planck/mean/docs/repl.txt | 27 ++++ .../dists/planck/mean/docs/types/index.d.ts | 52 +++++++ .../base/dists/planck/mean/docs/types/test.ts | 44 ++++++ .../base/dists/planck/mean/examples/index.js | 32 ++++ .../stats/base/dists/planck/mean/lib/index.js | 43 ++++++ .../stats/base/dists/planck/mean/lib/main.js | 65 ++++++++ .../stats/base/dists/planck/mean/package.json | 69 +++++++++ .../planck/mean/test/fixtures/python/REQUIRE | 3 + .../mean/test/fixtures/python/data.json | 1 + .../mean/test/fixtures/python/runner.py | 71 +++++++++ .../stats/base/dists/planck/mean/test/test.js | 77 ++++++++++ 13 files changed, 676 insertions(+) create mode 100644 lib/node_modules/@stdlib/stats/base/dists/planck/mean/README.md create mode 100644 lib/node_modules/@stdlib/stats/base/dists/planck/mean/benchmark/benchmark.js create mode 100644 lib/node_modules/@stdlib/stats/base/dists/planck/mean/docs/repl.txt create mode 100644 lib/node_modules/@stdlib/stats/base/dists/planck/mean/docs/types/index.d.ts create mode 100644 lib/node_modules/@stdlib/stats/base/dists/planck/mean/docs/types/test.ts create mode 100644 lib/node_modules/@stdlib/stats/base/dists/planck/mean/examples/index.js create mode 100644 lib/node_modules/@stdlib/stats/base/dists/planck/mean/lib/index.js create mode 100644 lib/node_modules/@stdlib/stats/base/dists/planck/mean/lib/main.js create mode 100644 lib/node_modules/@stdlib/stats/base/dists/planck/mean/package.json create mode 100644 lib/node_modules/@stdlib/stats/base/dists/planck/mean/test/fixtures/python/REQUIRE create mode 100644 lib/node_modules/@stdlib/stats/base/dists/planck/mean/test/fixtures/python/data.json create mode 100644 lib/node_modules/@stdlib/stats/base/dists/planck/mean/test/fixtures/python/runner.py create mode 100644 lib/node_modules/@stdlib/stats/base/dists/planck/mean/test/test.js diff --git a/lib/node_modules/@stdlib/stats/base/dists/planck/mean/README.md b/lib/node_modules/@stdlib/stats/base/dists/planck/mean/README.md new file mode 100644 index 000000000000..8b466bef716e --- /dev/null +++ b/lib/node_modules/@stdlib/stats/base/dists/planck/mean/README.md @@ -0,0 +1,140 @@ + + +# Mean + +> Planck distribution [expected value][expected-value]. + + + +
+ +The [expected value][expected-value] for a geometric random variable is + + + +```math +\mathbb{E}\left[ X \right] = \frac{1}{e^{\lambda} - 1} +``` + + + +where `lambda` is the shape parameter. + +
+ + + + + +
+ +## Usage + +```javascript +var mean = require( '@stdlib/stats/base/dists/planck/mean' ); +``` + +#### mean( lambda ) + +Returns the [expected value][expected-value] of a planck distribution with shape parameter `lambda`. + +```javascript +var v = mean( 0.1 ); +// returns ~9.5083 + +v = mean( 0.5 ); +// returns ~1.5415 +``` + +If provided a shape parameter `lambda` which is negative or `NaN`, the function returns `NaN`. + +```javascript +var v = mean( NaN ); +// returns NaN + +v = mean( -1.5 ); +// returns NaN +``` + +
+ + + + + +
+ +
+ + + + + +
+ +## Examples + + + +```javascript +var randu = require( '@stdlib/random/base/randu' ); +var mean = require( '@stdlib/stats/base/dists/planck/mean' ); + +var lambda; +var v; +var i; + +for ( i = 0; i < 10; i++ ) { + lambda = randu(); + v = mean( lambda ); + console.log( 'lambda: %d, E(X;lambda): %d', lambda.toFixed( 4 ), v.toFixed( 4 ) ); +} +``` + +
+ + + + + +
+ +
+ + + + + +
+ +
+ + + + + +
+ +[expected-value]: https://en.wikipedia.org/wiki/Expected_value + +
+ + diff --git a/lib/node_modules/@stdlib/stats/base/dists/planck/mean/benchmark/benchmark.js b/lib/node_modules/@stdlib/stats/base/dists/planck/mean/benchmark/benchmark.js new file mode 100644 index 000000000000..d2c1f9264bf5 --- /dev/null +++ b/lib/node_modules/@stdlib/stats/base/dists/planck/mean/benchmark/benchmark.js @@ -0,0 +1,52 @@ +/** +* @license Apache-2.0 +* +* Copyright (c) 2024 The Stdlib Authors. +* +* Licensed under the Apache License, Version 2.0 (the "License"); +* you may not use this file except in compliance with the License. +* You may obtain a copy of the License at +* +* http://www.apache.org/licenses/LICENSE-2.0 +* +* Unless required by applicable law or agreed to in writing, software +* distributed under the License is distributed on an "AS IS" BASIS, +* WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied. +* See the License for the specific language governing permissions and +* limitations under the License. +*/ + +'use strict'; + +// MODULES // + +var bench = require( '@stdlib/bench' ); +var randu = require( '@stdlib/random/base/randu' ); +var isnan = require( '@stdlib/math/base/assert/is-nan' ); +var EPS = require( '@stdlib/constants/float64/eps' ); +var pkg = require( './../package.json' ).name; +var mean = require( './../lib' ); + + +// MAIN // + +bench( pkg, function benchmark( b ) { + var lambda; + var y; + var i; + + b.tic(); + for ( i = 0; i < b.iterations; i++ ) { + lambda = ( randu()*20.0 ) + EPS; + y = mean( lambda ); + if ( isnan( y ) ) { + b.fail( 'should not return NaN' ); + } + } + b.toc(); + if ( isnan( y ) ) { + b.fail( 'should not return NaN' ); + } + b.pass( 'benchmark finished' ); + b.end(); +}); diff --git a/lib/node_modules/@stdlib/stats/base/dists/planck/mean/docs/repl.txt b/lib/node_modules/@stdlib/stats/base/dists/planck/mean/docs/repl.txt new file mode 100644 index 000000000000..9f0ee5452da0 --- /dev/null +++ b/lib/node_modules/@stdlib/stats/base/dists/planck/mean/docs/repl.txt @@ -0,0 +1,27 @@ + +{{alias}}( lambda ) + Returns the expected value of a planck distribution with shape + parameter `lambda`. + + If `lambda < 0`, the function returns `NaN`. + + Parameters + ---------- + lambda: number + Shape parameter. + + Returns + ------- + out: number + Expected value. + + Examples + -------- + > var v = {{alias}}( 0.1 ) + ~9.5083 + > v = {{alias}}( 0.5 ) + ~1.5415 + + See Also + -------- + diff --git a/lib/node_modules/@stdlib/stats/base/dists/planck/mean/docs/types/index.d.ts b/lib/node_modules/@stdlib/stats/base/dists/planck/mean/docs/types/index.d.ts new file mode 100644 index 000000000000..8aa1f36134ca --- /dev/null +++ b/lib/node_modules/@stdlib/stats/base/dists/planck/mean/docs/types/index.d.ts @@ -0,0 +1,52 @@ +/* +* @license Apache-2.0 +* +* Copyright (c) 2024 The Stdlib Authors. +* +* Licensed under the Apache License, Version 2.0 (the "License"); +* you may not use this file except in compliance with the License. +* You may obtain a copy of the License at +* +* http://www.apache.org/licenses/LICENSE-2.0 +* +* Unless required by applicable law or agreed to in writing, software +* distributed under the License is distributed on an "AS IS" BASIS, +* WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied. +* See the License for the specific language governing permissions and +* limitations under the License. +*/ + +// TypeScript Version: 4.1 + +/** +* Returns the expected value of a planck distribution. +* +* ## Notes +* +* - If `lambda < 0`, the function returns `NaN`. +* +* @param lambda - shape parameter +* @returns expected value +* +* @example +* var v = mean( 0.1 ); +* // returns ~9.5083 +* +* @example +* var v = mean( 0.5 ); +* // returns ~1.5415 +* +* @example +* var v = mean( 1.1 ); +* // returns ~0.4989 +* +* @example +* var v = mean( NaN ); +* // returns NaN +*/ +declare function mean( lambda: number ): number; + + +// EXPORTS // + +export = mean; diff --git a/lib/node_modules/@stdlib/stats/base/dists/planck/mean/docs/types/test.ts b/lib/node_modules/@stdlib/stats/base/dists/planck/mean/docs/types/test.ts new file mode 100644 index 000000000000..5e1d010d3b32 --- /dev/null +++ b/lib/node_modules/@stdlib/stats/base/dists/planck/mean/docs/types/test.ts @@ -0,0 +1,44 @@ +/* +* @license Apache-2.0 +* +* Copyright (c) 2024 The Stdlib Authors. +* +* Licensed under the Apache License, Version 2.0 (the "License"); +* you may not use this file except in compliance with the License. +* You may obtain a copy of the License at +* +* http://www.apache.org/licenses/LICENSE-2.0 +* +* Unless required by applicable law or agreed to in writing, software +* distributed under the License is distributed on an "AS IS" BASIS, +* WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied. +* See the License for the specific language governing permissions and +* limitations under the License. +*/ + +import mean = require( './index' ); + + +// TESTS // + +// The function returns a number... +{ + mean( 0.3 ); // $ExpectType number +} + +// The compiler throws an error if the function is provided a value other than a number... +{ + mean( true ); // $ExpectError + mean( false ); // $ExpectError + mean( null ); // $ExpectError + mean( undefined ); // $ExpectError + mean( '5' ); // $ExpectError + mean( [] ); // $ExpectError + mean( {} ); // $ExpectError + mean( ( x: number ): number => x ); // $ExpectError +} + +// The compiler throws an error if the function is provided insufficient arguments... +{ + mean(); // $ExpectError +} diff --git a/lib/node_modules/@stdlib/stats/base/dists/planck/mean/examples/index.js b/lib/node_modules/@stdlib/stats/base/dists/planck/mean/examples/index.js new file mode 100644 index 000000000000..b659da40306a --- /dev/null +++ b/lib/node_modules/@stdlib/stats/base/dists/planck/mean/examples/index.js @@ -0,0 +1,32 @@ +/** +* @license Apache-2.0 +* +* Copyright (c) 2024 The Stdlib Authors. +* +* Licensed under the Apache License, Version 2.0 (the "License"); +* you may not use this file except in compliance with the License. +* You may obtain a copy of the License at +* +* http://www.apache.org/licenses/LICENSE-2.0 +* +* Unless required by applicable law or agreed to in writing, software +* distributed under the License is distributed on an "AS IS" BASIS, +* WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied. +* See the License for the specific language governing permissions and +* limitations under the License. +*/ + +'use strict'; + +var randu = require( '@stdlib/random/base/randu' ); +var mean = require( './../lib' ); + +var lambda; +var v; +var i; + +for ( i = 0; i < 10; i++ ) { + lambda = randu(); + v = mean( lambda ); + console.log( 'lambda: %d, E(X;lambda): %d', lambda.toFixed( 4 ), v.toFixed( 4 ) ); +} diff --git a/lib/node_modules/@stdlib/stats/base/dists/planck/mean/lib/index.js b/lib/node_modules/@stdlib/stats/base/dists/planck/mean/lib/index.js new file mode 100644 index 000000000000..1e5c95a5962e --- /dev/null +++ b/lib/node_modules/@stdlib/stats/base/dists/planck/mean/lib/index.js @@ -0,0 +1,43 @@ +/** +* @license Apache-2.0 +* +* Copyright (c) 2024 The Stdlib Authors. +* +* Licensed under the Apache License, Version 2.0 (the "License"); +* you may not use this file except in compliance with the License. +* You may obtain a copy of the License at +* +* http://www.apache.org/licenses/LICENSE-2.0 +* +* Unless required by applicable law or agreed to in writing, software +* distributed under the License is distributed on an "AS IS" BASIS, +* WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied. +* See the License for the specific language governing permissions and +* limitations under the License. +*/ + +'use strict'; + +/** +* Planck distribution expected value. +* +* @module @stdlib/stats/base/dists/planck/mean +* +* @example +* var mean = require( '@stdlib/stats/base/dists/planck/mean' ); +* +* var v = mean( 0.1 ); +* // returns ~9.5083 +* +* v = mean( 0.5 ); +* // returns ~1.5415 +*/ + +// MODULES // + +var mean = require( './main.js' ); + + +// EXPORTS // + +module.exports = mean; diff --git a/lib/node_modules/@stdlib/stats/base/dists/planck/mean/lib/main.js b/lib/node_modules/@stdlib/stats/base/dists/planck/mean/lib/main.js new file mode 100644 index 000000000000..ffe8a35f7b31 --- /dev/null +++ b/lib/node_modules/@stdlib/stats/base/dists/planck/mean/lib/main.js @@ -0,0 +1,65 @@ +/** +* @license Apache-2.0 +* +* Copyright (c) 2024 The Stdlib Authors. +* +* Licensed under the Apache License, Version 2.0 (the "License"); +* you may not use this file except in compliance with the License. +* You may obtain a copy of the License at +* +* http://www.apache.org/licenses/LICENSE-2.0 +* +* Unless required by applicable law or agreed to in writing, software +* distributed under the License is distributed on an "AS IS" BASIS, +* WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied. +* See the License for the specific language governing permissions and +* limitations under the License. +*/ + +'use strict'; + +// MODULES // + +var isnan = require( '@stdlib/math/base/assert/is-nan' ); +var expm1 = require( '@stdlib/math/base/special/expm1' ); + + +// MAIN // + +/** +* Returns the expected value of a geometric distribution. +* +* @param {number} lambda - shape parameter +* @returns {NonNegativeNumber} expected value +* +* @example +* var v = mean( 0.1 ); +* // returns ~9.5083 +* +* @example +* var v = mean( 0.5 ); +* // returns ~1.5415 +* +* @example +* var v = mean( 1.1 ); +* // returns ~0.49896 +* +* @example +* var v = mean( -2.5 ); +* // returns NaN +* +* @example +* var v = mean( NaN ); +* // returns NaN +*/ +function mean( lambda ) { + if ( isnan( lambda ) || lambda < 0.0 ) { + return NaN; + } + return 1 / expm1(lambda); +} + + +// EXPORTS // + +module.exports = mean; diff --git a/lib/node_modules/@stdlib/stats/base/dists/planck/mean/package.json b/lib/node_modules/@stdlib/stats/base/dists/planck/mean/package.json new file mode 100644 index 000000000000..6cd780813fdf --- /dev/null +++ b/lib/node_modules/@stdlib/stats/base/dists/planck/mean/package.json @@ -0,0 +1,69 @@ +{ + "name": "@stdlib/stats/base/dists/planck/mean", + "version": "0.0.0", + "description": "Planck distribution expected value.", + "license": "Apache-2.0", + "author": { + "name": "The Stdlib Authors", + "url": "https://github.com/stdlib-js/stdlib/graphs/contributors" + }, + "contributors": [ + { + "name": "The Stdlib Authors", + "url": "https://github.com/stdlib-js/stdlib/graphs/contributors" + } + ], + "main": "./lib", + "directories": { + "benchmark": "./benchmark", + "doc": "./docs", + "example": "./examples", + "lib": "./lib", + "test": "./test" + }, + "types": "./docs/types", + "scripts": {}, + "homepage": "https://github.com/stdlib-js/stdlib", + "repository": { + "type": "git", + "url": "git://github.com/stdlib-js/stdlib.git" + }, + "bugs": { + "url": "https://github.com/stdlib-js/stdlib/issues" + }, + "dependencies": {}, + "devDependencies": {}, + "engines": { + "node": ">=0.10.0", + "npm": ">2.7.0" + }, + "os": [ + "aix", + "darwin", + "freebsd", + "linux", + "macos", + "openbsd", + "sunos", + "win32", + "windows" + ], + "keywords": [ + "stdlib", + "stdmath", + "statistics", + "stats", + "distribution", + "dist", + "parameter", + "memoryless", + "life-time", + "discrete", + "mean", + "average", + "avg", + "expected", + "planck", + "univariate" + ] +} diff --git a/lib/node_modules/@stdlib/stats/base/dists/planck/mean/test/fixtures/python/REQUIRE b/lib/node_modules/@stdlib/stats/base/dists/planck/mean/test/fixtures/python/REQUIRE new file mode 100644 index 000000000000..28a74a9652e6 --- /dev/null +++ b/lib/node_modules/@stdlib/stats/base/dists/planck/mean/test/fixtures/python/REQUIRE @@ -0,0 +1,3 @@ +numpy 2.2.0 +scipy 1.14.1 +python 3.10.12 diff --git a/lib/node_modules/@stdlib/stats/base/dists/planck/mean/test/fixtures/python/data.json b/lib/node_modules/@stdlib/stats/base/dists/planck/mean/test/fixtures/python/data.json new file mode 100644 index 000000000000..57741b85844c --- /dev/null +++ b/lib/node_modules/@stdlib/stats/base/dists/planck/mean/test/fixtures/python/data.json @@ -0,0 +1 @@ +{"lambda": [8.028981526883365, 10.482766697990893, 1.586688222880217, 5.195723555370789, 7.2102065523606935, 19.933714426047118, 2.313581434181975, 0.11692719729442969, 13.521984127175905, 12.435905479477405, 13.384199814701516, 19.972874085729867, 16.803817656088206, 10.789441466152446, 0.2856426175202631, 14.429778888133978, 6.491721880864231, 6.014869706283323, 19.794174098018143, 1.5585325859998322, 12.53105928389433, 2.6009947602450323, 2.0731672213676378, 0.5419733308751429, 9.299866994334982, 14.638274022917024, 16.79380335611161, 16.583536854944075, 16.470087784882995, 7.030253414781377, 18.073095295600027, 2.8157307054192904, 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b/lib/node_modules/@stdlib/stats/base/dists/planck/mean/test/fixtures/python/runner.py new file mode 100644 index 000000000000..cfa27e023593 --- /dev/null +++ b/lib/node_modules/@stdlib/stats/base/dists/planck/mean/test/fixtures/python/runner.py @@ -0,0 +1,71 @@ +# !/usr/bin/env python +# +# @license Apache-2.0 +# +# Copyright (c) 2024 The Stdlib Authors. +# +# Licensed under the Apache License, Version 2.0 (the "License"); +# you may not use this file except in compliance with the License. +# You may obtain a copy of the License at +# +# http://www.apache.org/licenses/LICENSE-2.0 +# +# Unless required by applicable law or agreed to in writing, software +# distributed under the License is distributed on an "AS IS" BASIS, +# WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied. +# See the License for the specific language governing permissions and +# limitations under the License. + +""" +This script generates fixture data for the Planck distribution's mean. + +It writes the generated data to JSON files for different lambda values. +""" + +import os +import json +import numpy as np +from scipy.stats import planck + + +def gen(lam, name): + """ + Generate fixture data and write to file. + + Parameters + ---------- + lam : ndarray + Shape parameter. + name : str + Output filename. + Examples + -------- + >>> lam = np.random.rand(1000) * 20 + >>> gen(x, lam, "data.json") + """ + # Compute mean values: + z = np.array([planck.mean(lami) for lami in lam]) + + # Store data to be written to file as a dictionary: + data = { + "lambda": lam.tolist(), + "expected": z.tolist() + } + + # Based on the script directory, create an output filepath: + filepath = os.path.join(dir_path, name) + + # Write the data to the output filepath as JSON: + with open(filepath, "w", encoding='utf-8') as outfile: + json.dump(data, outfile) + + # Include trailing newline + with open(filepath, "a", encoding='utf-8') as outfile: + outfile.write("\n") + + +# Get the directory in which this file resides: +dir_path = os.path.dirname(os.path.abspath(__file__)) + +lam_ = np.random.rand(1000) * 20.0 +gen(lam_, "data.json") diff --git a/lib/node_modules/@stdlib/stats/base/dists/planck/mean/test/test.js b/lib/node_modules/@stdlib/stats/base/dists/planck/mean/test/test.js new file mode 100644 index 000000000000..7dc62002c905 --- /dev/null +++ b/lib/node_modules/@stdlib/stats/base/dists/planck/mean/test/test.js @@ -0,0 +1,77 @@ +/** +* @license Apache-2.0 +* +* Copyright (c) 2024 The Stdlib Authors. +* +* Licensed under the Apache License, Version 2.0 (the "License"); +* you may not use this file except in compliance with the License. +* You may obtain a copy of the License at +* +* http://www.apache.org/licenses/LICENSE-2.0 +* +* Unless required by applicable law or agreed to in writing, software +* distributed under the License is distributed on an "AS IS" BASIS, +* WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied. +* See the License for the specific language governing permissions and +* limitations under the License. +*/ + +'use strict'; + +// MODULES // + +var tape = require( 'tape' ); +var isnan = require( '@stdlib/math/base/assert/is-nan' ); +var abs = require( '@stdlib/math/base/special/abs' ); +var EPS = require( '@stdlib/constants/float64/eps' ); +var mean = require( './../lib' ); + + +// FIXTURES // + +var data = require( './fixtures/python/data.json' ); + + +// TESTS // + +tape( 'main export is a function', function test( t ) { + t.ok( true, __filename ); + t.strictEqual( typeof mean, 'function', 'main export is a function' ); + t.end(); +}); + +tape( 'if provided `NaN` for `lambda`, the function returns `NaN`', function test( t ) { + var v = mean( NaN ); + t.equal( isnan( v ), true, 'returns NaN' ); + t.end(); +}); + +tape( 'if provided a success probability `lambda` which is negative, the function returns `NaN`', function test( t ) { + var v; + v = mean( -1.0 ); + t.equal( isnan( v ), true, 'returns NaN' ); + t.end(); +}); + +tape( 'the function returns the mean of a planck distribution', function test( t ) { + var expected; + var lambda; + var delta; + var tol; + var i; + var y; + + expected = data.expected; + lambda = data.lambda; + for ( i = 0; i < expected.length; i++ ) { + y = mean( lambda[i] ); + if ( y === expected[i] ) { + t.equal( y, expected[i], 'lambda: '+lambda[i]+', y: '+y+', expected: '+expected[i] ); + } else { + delta = abs( y - expected[ i ] ); + tol = 1.0 * EPS * abs( expected[ i ] ); + t.ok( delta <= tol, 'within tolerance. lambda: '+lambda[i]+'. y: '+y+'. E: '+expected[ i ]+'. Δ: '+delta+'. tol: '+tol+'.' ); + } + } + t.end(); +}); From 2b456876e683f5fe9c27fc940915787eb23fd142 Mon Sep 17 00:00:00 2001 From: Jaysukh-409 Date: Wed, 18 Dec 2024 19:52:32 +0530 Subject: [PATCH 2/4] fix: apply code review suggestion --- .../@stdlib/stats/base/dists/planck/mean/README.md | 4 ++-- .../stats/base/dists/planck/mean/benchmark/benchmark.js | 3 +-- .../@stdlib/stats/base/dists/planck/mean/docs/repl.txt | 2 +- .../stats/base/dists/planck/mean/docs/types/index.d.ts | 2 +- .../@stdlib/stats/base/dists/planck/mean/lib/main.js | 2 +- .../@stdlib/stats/base/dists/planck/mean/test/test.js | 8 ++++---- 6 files changed, 10 insertions(+), 11 deletions(-) diff --git a/lib/node_modules/@stdlib/stats/base/dists/planck/mean/README.md b/lib/node_modules/@stdlib/stats/base/dists/planck/mean/README.md index 8b466bef716e..dde895417d40 100644 --- a/lib/node_modules/@stdlib/stats/base/dists/planck/mean/README.md +++ b/lib/node_modules/@stdlib/stats/base/dists/planck/mean/README.md @@ -26,7 +26,7 @@ limitations under the License.
-The [expected value][expected-value] for a geometric random variable is +The [expected value][expected-value] for a Planck random variable is @@ -54,7 +54,7 @@ var mean = require( '@stdlib/stats/base/dists/planck/mean' ); #### mean( lambda ) -Returns the [expected value][expected-value] of a planck distribution with shape parameter `lambda`. +Returns the [expected value][expected-value] of a Planck distribution with shape parameter `lambda`. ```javascript var v = mean( 0.1 ); diff --git a/lib/node_modules/@stdlib/stats/base/dists/planck/mean/benchmark/benchmark.js b/lib/node_modules/@stdlib/stats/base/dists/planck/mean/benchmark/benchmark.js index d2c1f9264bf5..ee39df718945 100644 --- a/lib/node_modules/@stdlib/stats/base/dists/planck/mean/benchmark/benchmark.js +++ b/lib/node_modules/@stdlib/stats/base/dists/planck/mean/benchmark/benchmark.js @@ -23,7 +23,6 @@ var bench = require( '@stdlib/bench' ); var randu = require( '@stdlib/random/base/randu' ); var isnan = require( '@stdlib/math/base/assert/is-nan' ); -var EPS = require( '@stdlib/constants/float64/eps' ); var pkg = require( './../package.json' ).name; var mean = require( './../lib' ); @@ -37,7 +36,7 @@ bench( pkg, function benchmark( b ) { b.tic(); for ( i = 0; i < b.iterations; i++ ) { - lambda = ( randu()*20.0 ) + EPS; + lambda = ( randu()*20.0 ); y = mean( lambda ); if ( isnan( y ) ) { b.fail( 'should not return NaN' ); diff --git a/lib/node_modules/@stdlib/stats/base/dists/planck/mean/docs/repl.txt b/lib/node_modules/@stdlib/stats/base/dists/planck/mean/docs/repl.txt index 9f0ee5452da0..b3dbe20181bb 100644 --- a/lib/node_modules/@stdlib/stats/base/dists/planck/mean/docs/repl.txt +++ b/lib/node_modules/@stdlib/stats/base/dists/planck/mean/docs/repl.txt @@ -1,6 +1,6 @@ {{alias}}( lambda ) - Returns the expected value of a planck distribution with shape + Returns the expected value of a Planck distribution with shape parameter `lambda`. If `lambda < 0`, the function returns `NaN`. diff --git a/lib/node_modules/@stdlib/stats/base/dists/planck/mean/docs/types/index.d.ts b/lib/node_modules/@stdlib/stats/base/dists/planck/mean/docs/types/index.d.ts index 8aa1f36134ca..fe5c77ad1223 100644 --- a/lib/node_modules/@stdlib/stats/base/dists/planck/mean/docs/types/index.d.ts +++ b/lib/node_modules/@stdlib/stats/base/dists/planck/mean/docs/types/index.d.ts @@ -19,7 +19,7 @@ // TypeScript Version: 4.1 /** -* Returns the expected value of a planck distribution. +* Returns the expected value of a Planck distribution. * * ## Notes * diff --git a/lib/node_modules/@stdlib/stats/base/dists/planck/mean/lib/main.js b/lib/node_modules/@stdlib/stats/base/dists/planck/mean/lib/main.js index ffe8a35f7b31..ee1e668470df 100644 --- a/lib/node_modules/@stdlib/stats/base/dists/planck/mean/lib/main.js +++ b/lib/node_modules/@stdlib/stats/base/dists/planck/mean/lib/main.js @@ -27,7 +27,7 @@ var expm1 = require( '@stdlib/math/base/special/expm1' ); // MAIN // /** -* Returns the expected value of a geometric distribution. +* Returns the expected value of a Planck distribution. * * @param {number} lambda - shape parameter * @returns {NonNegativeNumber} expected value diff --git a/lib/node_modules/@stdlib/stats/base/dists/planck/mean/test/test.js b/lib/node_modules/@stdlib/stats/base/dists/planck/mean/test/test.js index 7dc62002c905..771a50342ab1 100644 --- a/lib/node_modules/@stdlib/stats/base/dists/planck/mean/test/test.js +++ b/lib/node_modules/@stdlib/stats/base/dists/planck/mean/test/test.js @@ -64,13 +64,13 @@ tape( 'the function returns the mean of a planck distribution', function test( t expected = data.expected; lambda = data.lambda; for ( i = 0; i < expected.length; i++ ) { - y = mean( lambda[i] ); - if ( y === expected[i] ) { - t.equal( y, expected[i], 'lambda: '+lambda[i]+', y: '+y+', expected: '+expected[i] ); + y = mean( lambda[ i ] ); + if ( y === expected[ i ] ) { + t.equal( y, expected[ i ], 'lambda: '+lambda[ i ]+', y: '+y+', expected: '+expected[ i ] ); } else { delta = abs( y - expected[ i ] ); tol = 1.0 * EPS * abs( expected[ i ] ); - t.ok( delta <= tol, 'within tolerance. lambda: '+lambda[i]+'. y: '+y+'. E: '+expected[ i ]+'. Δ: '+delta+'. tol: '+tol+'.' ); + t.ok( delta <= tol, 'within tolerance. lambda: '+lambda[ i ]+'. y: '+y+'. E: '+expected[ i ]+'. Δ: '+delta+'. tol: '+tol+'.' ); } } t.end(); From 27d16839e812838cb7e09624b1d9127252e2713c Mon Sep 17 00:00:00 2001 From: Jaysukh-409 Date: Thu, 19 Dec 2024 10:57:03 +0530 Subject: [PATCH 3/4] fix: apply code review suggestion --- .../stats/base/dists/planck/mean/README.md | 9 ++-- .../dists/planck/mean/benchmark/benchmark.js | 7 +-- .../base/dists/planck/mean/examples/index.js | 9 ++-- .../stats/base/dists/planck/mean/lib/main.js | 4 +- .../planck/mean/test/fixtures/python/REQUIRE | 3 -- .../mean/test/fixtures/python/data.json | 2 +- .../mean/test/fixtures/python/runner.py | 50 +++++++++++-------- 7 files changed, 45 insertions(+), 39 deletions(-) delete mode 100644 lib/node_modules/@stdlib/stats/base/dists/planck/mean/test/fixtures/python/REQUIRE diff --git a/lib/node_modules/@stdlib/stats/base/dists/planck/mean/README.md b/lib/node_modules/@stdlib/stats/base/dists/planck/mean/README.md index dde895417d40..20140ee8cd34 100644 --- a/lib/node_modules/@stdlib/stats/base/dists/planck/mean/README.md +++ b/lib/node_modules/@stdlib/stats/base/dists/planck/mean/README.md @@ -95,17 +95,18 @@ v = mean( -1.5 ); ```javascript -var randu = require( '@stdlib/random/base/randu' ); +var uniform = require( '@stdlib/random/array/uniform' ); var mean = require( '@stdlib/stats/base/dists/planck/mean' ); var lambda; var v; var i; +lambda = uniform( 10, 0.0, 10.0 ); + for ( i = 0; i < 10; i++ ) { - lambda = randu(); - v = mean( lambda ); - console.log( 'lambda: %d, E(X;lambda): %d', lambda.toFixed( 4 ), v.toFixed( 4 ) ); + v = mean( lambda[ i ] ); + console.log( 'lambda: %d, E(X;lambda): %d', lambda[ i ].toFixed( 4 ), v.toFixed( 4 ) ); } ``` diff --git a/lib/node_modules/@stdlib/stats/base/dists/planck/mean/benchmark/benchmark.js b/lib/node_modules/@stdlib/stats/base/dists/planck/mean/benchmark/benchmark.js index ee39df718945..33059a283a7b 100644 --- a/lib/node_modules/@stdlib/stats/base/dists/planck/mean/benchmark/benchmark.js +++ b/lib/node_modules/@stdlib/stats/base/dists/planck/mean/benchmark/benchmark.js @@ -21,7 +21,7 @@ // MODULES // var bench = require( '@stdlib/bench' ); -var randu = require( '@stdlib/random/base/randu' ); +var uniform = require( '@stdlib/random/array/uniform' ); var isnan = require( '@stdlib/math/base/assert/is-nan' ); var pkg = require( './../package.json' ).name; var mean = require( './../lib' ); @@ -34,10 +34,11 @@ bench( pkg, function benchmark( b ) { var y; var i; + lambda = uniform( 100, 0.0, 10.0 ); + b.tic(); for ( i = 0; i < b.iterations; i++ ) { - lambda = ( randu()*20.0 ); - y = mean( lambda ); + y = mean( lambda[ i % lambda.length ] ); if ( isnan( y ) ) { b.fail( 'should not return NaN' ); } diff --git a/lib/node_modules/@stdlib/stats/base/dists/planck/mean/examples/index.js b/lib/node_modules/@stdlib/stats/base/dists/planck/mean/examples/index.js index b659da40306a..68676607538e 100644 --- a/lib/node_modules/@stdlib/stats/base/dists/planck/mean/examples/index.js +++ b/lib/node_modules/@stdlib/stats/base/dists/planck/mean/examples/index.js @@ -18,15 +18,16 @@ 'use strict'; -var randu = require( '@stdlib/random/base/randu' ); +var uniform = require( '@stdlib/random/array/uniform' ); var mean = require( './../lib' ); var lambda; var v; var i; +lambda = uniform( 10, 0.0, 10.0 ); + for ( i = 0; i < 10; i++ ) { - lambda = randu(); - v = mean( lambda ); - console.log( 'lambda: %d, E(X;lambda): %d', lambda.toFixed( 4 ), v.toFixed( 4 ) ); + v = mean( lambda[ i ] ); + console.log( 'lambda: %d, E(X;lambda): %d', lambda[ i ].toFixed( 4 ), v.toFixed( 4 ) ); } diff --git a/lib/node_modules/@stdlib/stats/base/dists/planck/mean/lib/main.js b/lib/node_modules/@stdlib/stats/base/dists/planck/mean/lib/main.js index ee1e668470df..3070b5da07e7 100644 --- a/lib/node_modules/@stdlib/stats/base/dists/planck/mean/lib/main.js +++ b/lib/node_modules/@stdlib/stats/base/dists/planck/mean/lib/main.js @@ -29,7 +29,7 @@ var expm1 = require( '@stdlib/math/base/special/expm1' ); /** * Returns the expected value of a Planck distribution. * -* @param {number} lambda - shape parameter +* @param {NonNegativeNumber} lambda - shape parameter * @returns {NonNegativeNumber} expected value * * @example @@ -56,7 +56,7 @@ function mean( lambda ) { if ( isnan( lambda ) || lambda < 0.0 ) { return NaN; } - return 1 / expm1(lambda); + return 1 / expm1( lambda ); } diff --git a/lib/node_modules/@stdlib/stats/base/dists/planck/mean/test/fixtures/python/REQUIRE b/lib/node_modules/@stdlib/stats/base/dists/planck/mean/test/fixtures/python/REQUIRE deleted file mode 100644 index 28a74a9652e6..000000000000 --- a/lib/node_modules/@stdlib/stats/base/dists/planck/mean/test/fixtures/python/REQUIRE +++ /dev/null @@ -1,3 +0,0 @@ -numpy 2.2.0 -scipy 1.14.1 -python 3.10.12 diff --git a/lib/node_modules/@stdlib/stats/base/dists/planck/mean/test/fixtures/python/data.json b/lib/node_modules/@stdlib/stats/base/dists/planck/mean/test/fixtures/python/data.json index 57741b85844c..1d310ab9b8fa 100644 --- a/lib/node_modules/@stdlib/stats/base/dists/planck/mean/test/fixtures/python/data.json +++ b/lib/node_modules/@stdlib/stats/base/dists/planck/mean/test/fixtures/python/data.json @@ -1 +1 @@ -{"lambda": [8.028981526883365, 10.482766697990893, 1.586688222880217, 5.195723555370789, 7.2102065523606935, 19.933714426047118, 2.313581434181975, 0.11692719729442969, 13.521984127175905, 12.435905479477405, 13.384199814701516, 19.972874085729867, 16.803817656088206, 10.789441466152446, 0.2856426175202631, 14.429778888133978, 6.491721880864231, 6.014869706283323, 19.794174098018143, 1.5585325859998322, 12.53105928389433, 2.6009947602450323, 2.0731672213676378, 0.5419733308751429, 9.299866994334982, 14.638274022917024, 16.79380335611161, 16.583536854944075, 16.470087784882995, 7.030253414781377, 18.073095295600027, 2.8157307054192904, 14.6513657211353, 10.58462416768964, 14.97698388889229, 14.197310012893603, 7.189909801731906, 7.787523403127117, 4.092937002333626, 3.834181105702106, 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1.0922176170160511e-07, 1.0673386942419469e-07, 0.00741813707050886, 2.5186033099514652e-09, 0.24193032830704764, 0.0002891428099699839, 1.4270075785526634e-06, 3.636454496376944, 9.611119432850128e-08, 1.6449662758361556e-05]} diff --git a/lib/node_modules/@stdlib/stats/base/dists/planck/mean/test/fixtures/python/runner.py b/lib/node_modules/@stdlib/stats/base/dists/planck/mean/test/fixtures/python/runner.py index cfa27e023593..66138870bc30 100644 --- a/lib/node_modules/@stdlib/stats/base/dists/planck/mean/test/fixtures/python/runner.py +++ b/lib/node_modules/@stdlib/stats/base/dists/planck/mean/test/fixtures/python/runner.py @@ -1,4 +1,4 @@ -# !/usr/bin/env python +#!/usr/bin/env python # # @license Apache-2.0 # @@ -16,35 +16,38 @@ # See the License for the specific language governing permissions and # limitations under the License. -""" -This script generates fixture data for the Planck distribution's mean. - -It writes the generated data to JSON files for different lambda values. -""" +"""Generate fixtures.""" import os import json import numpy as np from scipy.stats import planck +# Get the file path: +FILE = os.path.realpath(__file__) + +# Extract the directory in which this file resides: +DIR = os.path.dirname(FILE) + def gen(lam, name): """ Generate fixture data and write to file. - Parameters - ---------- - lam : ndarray - Shape parameter. - name : str - Output filename. - Examples - -------- - >>> lam = np.random.rand(1000) * 20 - >>> gen(x, lam, "data.json") + # Arguments + + * `lam`: shape parameter. + * `name::str`: output filename. + + # Examples + + ```python + python> lam = np.random.rand(1000) * 20 + python> gen(lam, "data.json") + ``` """ # Compute mean values: - z = np.array([planck.mean(lami) for lami in lam]) + z = np.array(planck.mean(lam)) # Store data to be written to file as a dictionary: data = { @@ -53,7 +56,7 @@ def gen(lam, name): } # Based on the script directory, create an output filepath: - filepath = os.path.join(dir_path, name) + filepath = os.path.join(DIR, name) # Write the data to the output filepath as JSON: with open(filepath, "w", encoding='utf-8') as outfile: @@ -64,8 +67,11 @@ def gen(lam, name): outfile.write("\n") -# Get the directory in which this file resides: -dir_path = os.path.dirname(os.path.abspath(__file__)) +def main(): + """Generate fixture data.""" + lam_ = np.random.rand(1000) * 20.0 + gen(lam_, "data.json") + -lam_ = np.random.rand(1000) * 20.0 -gen(lam_, "data.json") +if __name__ == "__main__": + main() From 03838ec1e55e961910812f9dedcc7482dcc27f4e Mon Sep 17 00:00:00 2001 From: Athan Reines Date: Wed, 25 Dec 2024 02:39:20 -0800 Subject: [PATCH 4/4] chore: clean-up --- .../@stdlib/stats/base/dists/planck/mean/README.md | 12 +++++------- .../base/dists/planck/mean/benchmark/benchmark.js | 2 +- .../stats/base/dists/planck/mean/docs/repl.txt | 9 ++++----- .../base/dists/planck/mean/docs/types/index.d.ts | 2 +- .../stats/base/dists/planck/mean/examples/index.js | 10 ++++------ .../stats/base/dists/planck/mean/lib/main.js | 6 +++--- .../planck/mean/test/fixtures/python/runner.py | 6 +++--- .../stats/base/dists/planck/mean/test/test.js | 13 +++++++++---- 8 files changed, 30 insertions(+), 30 deletions(-) diff --git a/lib/node_modules/@stdlib/stats/base/dists/planck/mean/README.md b/lib/node_modules/@stdlib/stats/base/dists/planck/mean/README.md index 20140ee8cd34..055f2d793ebf 100644 --- a/lib/node_modules/@stdlib/stats/base/dists/planck/mean/README.md +++ b/lib/node_modules/@stdlib/stats/base/dists/planck/mean/README.md @@ -36,7 +36,7 @@ The [expected value][expected-value] for a Planck random variable is -where `lambda` is the shape parameter. +where `λ` is the shape parameter.
@@ -64,7 +64,7 @@ v = mean( 0.5 ); // returns ~1.5415 ``` -If provided a shape parameter `lambda` which is negative or `NaN`, the function returns `NaN`. +If provided a shape parameter `lambda` which is nonpositive or `NaN`, the function returns `NaN`. ```javascript var v = mean( NaN ); @@ -98,15 +98,13 @@ v = mean( -1.5 ); var uniform = require( '@stdlib/random/array/uniform' ); var mean = require( '@stdlib/stats/base/dists/planck/mean' ); -var lambda; +var lambda = uniform( 10, 0.1, 10.0 ); + var v; var i; - -lambda = uniform( 10, 0.0, 10.0 ); - for ( i = 0; i < 10; i++ ) { v = mean( lambda[ i ] ); - console.log( 'lambda: %d, E(X;lambda): %d', lambda[ i ].toFixed( 4 ), v.toFixed( 4 ) ); + console.log( 'λ: %d, E(X;λ): %d', lambda[ i ].toFixed( 4 ), v.toFixed( 4 ) ); } ``` diff --git a/lib/node_modules/@stdlib/stats/base/dists/planck/mean/benchmark/benchmark.js b/lib/node_modules/@stdlib/stats/base/dists/planck/mean/benchmark/benchmark.js index 33059a283a7b..e40b58534848 100644 --- a/lib/node_modules/@stdlib/stats/base/dists/planck/mean/benchmark/benchmark.js +++ b/lib/node_modules/@stdlib/stats/base/dists/planck/mean/benchmark/benchmark.js @@ -34,7 +34,7 @@ bench( pkg, function benchmark( b ) { var y; var i; - lambda = uniform( 100, 0.0, 10.0 ); + lambda = uniform( 100, 0.1, 10.0 ); b.tic(); for ( i = 0; i < b.iterations; i++ ) { diff --git a/lib/node_modules/@stdlib/stats/base/dists/planck/mean/docs/repl.txt b/lib/node_modules/@stdlib/stats/base/dists/planck/mean/docs/repl.txt index b3dbe20181bb..eaba8315d645 100644 --- a/lib/node_modules/@stdlib/stats/base/dists/planck/mean/docs/repl.txt +++ b/lib/node_modules/@stdlib/stats/base/dists/planck/mean/docs/repl.txt @@ -1,13 +1,12 @@ -{{alias}}( lambda ) - Returns the expected value of a Planck distribution with shape - parameter `lambda`. +{{alias}}( λ ) + Returns the expected value of a Planck distribution with shape parameter λ. - If `lambda < 0`, the function returns `NaN`. + If `λ <= 0`, the function returns `NaN`. Parameters ---------- - lambda: number + λ: number Shape parameter. Returns diff --git a/lib/node_modules/@stdlib/stats/base/dists/planck/mean/docs/types/index.d.ts b/lib/node_modules/@stdlib/stats/base/dists/planck/mean/docs/types/index.d.ts index fe5c77ad1223..5ee78454dc86 100644 --- a/lib/node_modules/@stdlib/stats/base/dists/planck/mean/docs/types/index.d.ts +++ b/lib/node_modules/@stdlib/stats/base/dists/planck/mean/docs/types/index.d.ts @@ -23,7 +23,7 @@ * * ## Notes * -* - If `lambda < 0`, the function returns `NaN`. +* - If `lambda <= 0`, the function returns `NaN`. * * @param lambda - shape parameter * @returns expected value diff --git a/lib/node_modules/@stdlib/stats/base/dists/planck/mean/examples/index.js b/lib/node_modules/@stdlib/stats/base/dists/planck/mean/examples/index.js index 68676607538e..40ed3b95ba46 100644 --- a/lib/node_modules/@stdlib/stats/base/dists/planck/mean/examples/index.js +++ b/lib/node_modules/@stdlib/stats/base/dists/planck/mean/examples/index.js @@ -21,13 +21,11 @@ var uniform = require( '@stdlib/random/array/uniform' ); var mean = require( './../lib' ); -var lambda; +var lambda = uniform( 10, 0.1, 10.0 ); + var v; var i; - -lambda = uniform( 10, 0.0, 10.0 ); - -for ( i = 0; i < 10; i++ ) { +for ( i = 0; i < lambda.length; i++ ) { v = mean( lambda[ i ] ); - console.log( 'lambda: %d, E(X;lambda): %d', lambda[ i ].toFixed( 4 ), v.toFixed( 4 ) ); + console.log( 'λ: %d, E(X;λ): %d', lambda[ i ].toFixed( 4 ), v.toFixed( 4 ) ); } diff --git a/lib/node_modules/@stdlib/stats/base/dists/planck/mean/lib/main.js b/lib/node_modules/@stdlib/stats/base/dists/planck/mean/lib/main.js index 3070b5da07e7..a3a4a4130f70 100644 --- a/lib/node_modules/@stdlib/stats/base/dists/planck/mean/lib/main.js +++ b/lib/node_modules/@stdlib/stats/base/dists/planck/mean/lib/main.js @@ -29,7 +29,7 @@ var expm1 = require( '@stdlib/math/base/special/expm1' ); /** * Returns the expected value of a Planck distribution. * -* @param {NonNegativeNumber} lambda - shape parameter +* @param {PositiveNumber} lambda - shape parameter * @returns {NonNegativeNumber} expected value * * @example @@ -53,10 +53,10 @@ var expm1 = require( '@stdlib/math/base/special/expm1' ); * // returns NaN */ function mean( lambda ) { - if ( isnan( lambda ) || lambda < 0.0 ) { + if ( isnan( lambda ) || lambda <= 0.0 ) { return NaN; } - return 1 / expm1( lambda ); + return 1.0 / expm1( lambda ); } diff --git a/lib/node_modules/@stdlib/stats/base/dists/planck/mean/test/fixtures/python/runner.py b/lib/node_modules/@stdlib/stats/base/dists/planck/mean/test/fixtures/python/runner.py index 66138870bc30..88d2a792d470 100644 --- a/lib/node_modules/@stdlib/stats/base/dists/planck/mean/test/fixtures/python/runner.py +++ b/lib/node_modules/@stdlib/stats/base/dists/planck/mean/test/fixtures/python/runner.py @@ -62,15 +62,15 @@ def gen(lam, name): with open(filepath, "w", encoding='utf-8') as outfile: json.dump(data, outfile) - # Include trailing newline + # Include trailing newline: with open(filepath, "a", encoding='utf-8') as outfile: outfile.write("\n") def main(): """Generate fixture data.""" - lam_ = np.random.rand(1000) * 20.0 - gen(lam_, "data.json") + lam = np.random.rand(1000) * 20.0 + gen(lam, "data.json") if __name__ == "__main__": diff --git a/lib/node_modules/@stdlib/stats/base/dists/planck/mean/test/test.js b/lib/node_modules/@stdlib/stats/base/dists/planck/mean/test/test.js index 771a50342ab1..17e25cf913ba 100644 --- a/lib/node_modules/@stdlib/stats/base/dists/planck/mean/test/test.js +++ b/lib/node_modules/@stdlib/stats/base/dists/planck/mean/test/test.js @@ -42,18 +42,23 @@ tape( 'main export is a function', function test( t ) { tape( 'if provided `NaN` for `lambda`, the function returns `NaN`', function test( t ) { var v = mean( NaN ); - t.equal( isnan( v ), true, 'returns NaN' ); + t.equal( isnan( v ), true, 'returns expected value' ); t.end(); }); -tape( 'if provided a success probability `lambda` which is negative, the function returns `NaN`', function test( t ) { +tape( 'if provided a success probability `lambda` which is nonpositive, the function returns `NaN`', function test( t ) { var v; + + v = mean( 0.0 ); + t.equal( isnan( v ), true, 'returns expected value' ); + v = mean( -1.0 ); - t.equal( isnan( v ), true, 'returns NaN' ); + t.equal( isnan( v ), true, 'returns expected value' ); + t.end(); }); -tape( 'the function returns the mean of a planck distribution', function test( t ) { +tape( 'the function returns the mean of a Planck distribution', function test( t ) { var expected; var lambda; var delta;