2023-10-03T22:41:23.5187135Z Requested labels: ubuntu-22.04 2023-10-03T22:41:23.5187538Z Job defined at: AMReX-Codes/pyamrex/.github/workflows/stubs.yml@refs/pull/196/merge 2023-10-03T22:41:23.5187916Z Reusable workflow chain: 2023-10-03T22:41:23.5188094Z AMReX-Codes/pyamrex/.github/workflows/ci.yml@refs/pull/196/merge (c4c6a596f832bfea01b8c0a90da9e20f237a6f9b) 2023-10-03T22:41:23.5188250Z -> AMReX-Codes/pyamrex/.github/workflows/stubs.yml@refs/pull/196/merge (c4c6a596f832bfea01b8c0a90da9e20f237a6f9b) 2023-10-03T22:41:23.5188375Z Waiting for a runner to pick up this job... 2023-10-03T22:41:23.7656536Z Job is waiting for a hosted runner to come online. 2023-10-03T22:41:26.5288874Z Job is about to start running on the hosted runner: GitHub Actions 2 (hosted) 2023-10-03T22:41:29.2831500Z Current runner version: '2.309.0' 2023-10-03T22:41:29.2860965Z ##[group]Operating System 2023-10-03T22:41:29.2861504Z Ubuntu 2023-10-03T22:41:29.2861839Z 22.04.3 2023-10-03T22:41:29.2862147Z LTS 2023-10-03T22:41:29.2862558Z ##[endgroup] 2023-10-03T22:41:29.2862916Z ##[group]Runner Image 2023-10-03T22:41:29.2863312Z Image: ubuntu-22.04 2023-10-03T22:41:29.2863621Z Version: 20230924.1.0 2023-10-03T22:41:29.2864209Z Included Software: https://github.com/actions/runner-images/blob/ubuntu22/20230924.1/images/linux/Ubuntu2204-Readme.md 2023-10-03T22:41:29.2865003Z Image Release: https://github.com/actions/runner-images/releases/tag/ubuntu22%2F20230924.1 2023-10-03T22:41:29.2865521Z ##[endgroup] 2023-10-03T22:41:29.2865852Z ##[group]Runner Image Provisioner 2023-10-03T22:41:29.2866235Z 2.0.310.1 2023-10-03T22:41:29.2866615Z ##[endgroup] 2023-10-03T22:41:29.2867319Z ##[group]GITHUB_TOKEN Permissions 2023-10-03T22:41:29.2869032Z Contents: read 2023-10-03T22:41:29.2869405Z Metadata: read 2023-10-03T22:41:29.2870088Z ##[endgroup] 2023-10-03T22:41:29.2873829Z Secret source: None 2023-10-03T22:41:29.2874384Z Prepare workflow directory 2023-10-03T22:41:29.3750708Z Prepare all required actions 2023-10-03T22:41:29.3947872Z Getting action download info 2023-10-03T22:41:29.7108974Z Download action repository 'actions/checkout@v3' (SHA:f43a0e5ff2bd294095638e18286ca9a3d1956744) 2023-10-03T22:41:30.0933956Z Download action repository 'actions/setup-python@v4' (SHA:65d7f2d534ac1bc67fcd62888c5f4f3d2cb2b236) 2023-10-03T22:41:30.2983547Z Download action repository 'actions/cache@v3' (SHA:704facf57e6136b1bc63b828d79edcd491f0ee84) 2023-10-03T22:41:30.5851266Z Download action repository 'stefanzweifel/git-auto-commit-action@v4' (SHA:3ea6ae190baf489ba007f7c92608f33ce20ef04a) 2023-10-03T22:41:31.0411105Z Uses: AMReX-Codes/pyamrex/.github/workflows/stubs.yml@refs/pull/196/merge (c4c6a596f832bfea01b8c0a90da9e20f237a6f9b) 2023-10-03T22:41:31.0412989Z Complete job name: 🔄 Update Stub Files / Stubs 2023-10-03T22:41:31.1383602Z ##[group]Run actions/checkout@v3 2023-10-03T22:41:31.1383981Z with: 2023-10-03T22:41:31.1384245Z repository: ax3l/pyamrex 2023-10-03T22:41:31.1384536Z ref: array4-numpy-copy-host 2023-10-03T22:41:31.1385091Z token: *** 2023-10-03T22:41:31.1385359Z ssh-strict: true 2023-10-03T22:41:31.1385630Z persist-credentials: true 2023-10-03T22:41:31.1385904Z clean: true 2023-10-03T22:41:31.1386198Z sparse-checkout-cone-mode: true 2023-10-03T22:41:31.1386497Z fetch-depth: 1 2023-10-03T22:41:31.1386736Z fetch-tags: false 2023-10-03T22:41:31.1386980Z lfs: false 2023-10-03T22:41:31.1387225Z submodules: false 2023-10-03T22:41:31.1387487Z set-safe-directory: true 2023-10-03T22:41:31.1387741Z env: 2023-10-03T22:41:31.1387954Z CC: gcc 2023-10-03T22:41:31.1388157Z CXX: g++ 2023-10-03T22:41:31.1388388Z CXXFLAGS: -O1 2023-10-03T22:41:31.1388634Z OMP_NUM_THREAD: 2 2023-10-03T22:41:31.1388868Z ##[endgroup] 2023-10-03T22:41:31.4006021Z Syncing repository: ax3l/pyamrex 2023-10-03T22:41:31.4008003Z ##[group]Getting Git version info 2023-10-03T22:41:31.4008815Z Working directory is '/home/runner/work/pyamrex/pyamrex' 2023-10-03T22:41:31.4010543Z [command]/usr/bin/git version 2023-10-03T22:41:31.4107774Z git version 2.42.0 2023-10-03T22:41:31.4109237Z ##[endgroup] 2023-10-03T22:41:31.4122377Z Temporarily overriding HOME='/home/runner/work/_temp/cb296178-bd87-4400-bf60-2c8ea0d25402' before making global git config changes 2023-10-03T22:41:31.4123780Z Adding repository directory to the temporary git global config as a safe directory 2023-10-03T22:41:31.4124464Z [command]/usr/bin/git config --global --add safe.directory /home/runner/work/pyamrex/pyamrex 2023-10-03T22:41:31.4258247Z Deleting the contents of '/home/runner/work/pyamrex/pyamrex' 2023-10-03T22:41:31.4259042Z ##[group]Initializing the repository 2023-10-03T22:41:31.4259449Z [command]/usr/bin/git init /home/runner/work/pyamrex/pyamrex 2023-10-03T22:41:31.4439354Z hint: Using 'master' as the name for the initial branch. This default branch name 2023-10-03T22:41:31.4546422Z hint: is subject to change. To configure the initial branch name to use in all 2023-10-03T22:41:31.4547299Z hint: of your new repositories, which will suppress this warning, call: 2023-10-03T22:41:31.4547643Z hint: 2023-10-03T22:41:31.4548157Z hint: git config --global init.defaultBranch 2023-10-03T22:41:31.4548476Z hint: 2023-10-03T22:41:31.4548892Z hint: Names commonly chosen instead of 'master' are 'main', 'trunk' and 2023-10-03T22:41:31.4549470Z hint: 'development'. The just-created branch can be renamed via this command: 2023-10-03T22:41:31.4549827Z hint: 2023-10-03T22:41:31.4550106Z hint: git branch -m 2023-10-03T22:41:31.4550688Z Initialized empty Git repository in /home/runner/work/pyamrex/pyamrex/.git/ 2023-10-03T22:41:31.4551786Z [command]/usr/bin/git remote add origin https://github.com/ax3l/pyamrex 2023-10-03T22:41:31.4552803Z ##[endgroup] 2023-10-03T22:41:31.4553310Z ##[group]Disabling automatic garbage collection 2023-10-03T22:41:31.4553781Z [command]/usr/bin/git config --local gc.auto 0 2023-10-03T22:41:31.4554682Z ##[endgroup] 2023-10-03T22:41:31.4555143Z ##[group]Setting up auth 2023-10-03T22:41:31.4555610Z [command]/usr/bin/git config --local --name-only --get-regexp core\.sshCommand 2023-10-03T22:41:31.4556982Z [command]/usr/bin/git submodule foreach --recursive sh -c "git config --local --name-only --get-regexp 'core\.sshCommand' && git config --local --unset-all 'core.sshCommand' || :" 2023-10-03T22:41:31.4907226Z [command]/usr/bin/git config --local --name-only --get-regexp http\.https\:\/\/github\.com\/\.extraheader 2023-10-03T22:41:31.5005690Z [command]/usr/bin/git submodule foreach --recursive sh -c "git config --local --name-only --get-regexp 'http\.https\:\/\/github\.com\/\.extraheader' && git config --local --unset-all 'http.https://github.com/.extraheader' || :" 2023-10-03T22:41:31.5492170Z [command]/usr/bin/git config --local http.https://github.com/.extraheader AUTHORIZATION: basic *** 2023-10-03T22:41:31.5585125Z ##[endgroup] 2023-10-03T22:41:31.5585669Z ##[group]Fetching the repository 2023-10-03T22:41:31.5586878Z [command]/usr/bin/git -c protocol.version=2 fetch --no-tags --prune --progress --no-recurse-submodules --depth=1 origin +refs/heads/array4-numpy-copy-host*:refs/remotes/origin/array4-numpy-copy-host* +refs/tags/array4-numpy-copy-host*:refs/tags/array4-numpy-copy-host* 2023-10-03T22:41:32.0602240Z remote: Enumerating objects: 185, done. 2023-10-03T22:41:32.0602951Z remote: 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remote: Counting objects: 73% (136/185) 2023-10-03T22:41:32.0638514Z remote: Counting objects: 74% (137/185) 2023-10-03T22:41:32.0639063Z remote: Counting objects: 75% (139/185) 2023-10-03T22:41:32.0639459Z remote: Counting objects: 76% (141/185) 2023-10-03T22:41:32.0639800Z remote: Counting objects: 77% (143/185) 2023-10-03T22:41:32.0640188Z remote: Counting objects: 78% (145/185) 2023-10-03T22:41:32.0640660Z remote: Counting objects: 79% (147/185) 2023-10-03T22:41:32.0641039Z remote: Counting objects: 80% (148/185) 2023-10-03T22:41:32.0641438Z remote: Counting objects: 81% (150/185) 2023-10-03T22:41:32.0641837Z remote: Counting objects: 82% (152/185) 2023-10-03T22:41:32.0642280Z remote: Counting objects: 83% (154/185) 2023-10-03T22:41:32.0642638Z remote: Counting objects: 84% (156/185) 2023-10-03T22:41:32.0643033Z remote: Counting objects: 85% (158/185) 2023-10-03T22:41:32.0643435Z remote: Counting objects: 86% (160/185) 2023-10-03T22:41:32.0643779Z remote: Counting objects: 87% 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(112/162) 2023-10-03T22:41:32.0793930Z remote: Compressing objects: 70% (114/162) 2023-10-03T22:41:32.0794271Z remote: Compressing objects: 71% (116/162) 2023-10-03T22:41:32.0794733Z remote: Compressing objects: 72% (117/162) 2023-10-03T22:41:32.0795126Z remote: Compressing objects: 73% (119/162) 2023-10-03T22:41:32.0795491Z remote: Compressing objects: 74% (120/162) 2023-10-03T22:41:32.0796116Z remote: Compressing objects: 75% (122/162) 2023-10-03T22:41:32.0796507Z remote: Compressing objects: 76% (124/162) 2023-10-03T22:41:32.0796946Z remote: Compressing objects: 77% (125/162) 2023-10-03T22:41:32.0797349Z remote: Compressing objects: 78% (127/162) 2023-10-03T22:41:32.0809949Z remote: Compressing objects: 79% (128/162) 2023-10-03T22:41:32.0810377Z remote: Compressing objects: 80% (130/162) 2023-10-03T22:41:32.0814518Z remote: Compressing objects: 81% (132/162) 2023-10-03T22:41:32.0815609Z remote: Compressing objects: 82% (133/162) 2023-10-03T22:41:32.0817211Z remote: Compressing objects: 83% (135/162) 2023-10-03T22:41:32.0818369Z remote: Compressing objects: 84% (137/162) 2023-10-03T22:41:32.0825276Z remote: Compressing objects: 85% (138/162) 2023-10-03T22:41:32.0825911Z remote: Compressing objects: 86% (140/162) 2023-10-03T22:41:32.0826322Z remote: Compressing objects: 87% (141/162) 2023-10-03T22:41:32.0826736Z remote: Compressing objects: 88% (143/162) 2023-10-03T22:41:32.0827077Z remote: Compressing objects: 89% (145/162) 2023-10-03T22:41:32.0827549Z remote: Compressing objects: 90% (146/162) 2023-10-03T22:41:32.0827945Z remote: Compressing objects: 91% (148/162) 2023-10-03T22:41:32.0828286Z remote: Compressing objects: 92% (150/162) 2023-10-03T22:41:32.0828675Z remote: Compressing objects: 93% (151/162) 2023-10-03T22:41:32.0829075Z remote: Compressing objects: 94% (153/162) 2023-10-03T22:41:32.0829473Z remote: Compressing objects: 95% (154/162) 2023-10-03T22:41:32.0829862Z remote: Compressing objects: 96% (156/162) 2023-10-03T22:41:32.0830255Z remote: Compressing objects: 97% (158/162) 2023-10-03T22:41:32.0830590Z remote: Compressing objects: 98% (159/162) 2023-10-03T22:41:32.0830990Z remote: Compressing objects: 99% (161/162) 2023-10-03T22:41:32.0831737Z remote: Compressing objects: 100% (162/162) 2023-10-03T22:41:32.0832158Z remote: Compressing objects: 100% (162/162), done. 2023-10-03T22:41:32.0874495Z Receiving objects: 0% (1/185) 2023-10-03T22:41:32.0879218Z Receiving objects: 1% (2/185) 2023-10-03T22:41:32.0882075Z Receiving objects: 2% (4/185) 2023-10-03T22:41:32.0885322Z Receiving objects: 3% (6/185) 2023-10-03T22:41:32.0890778Z Receiving objects: 4% (8/185) 2023-10-03T22:41:32.0893502Z Receiving objects: 5% (10/185) 2023-10-03T22:41:32.0896693Z Receiving objects: 6% (12/185) 2023-10-03T22:41:32.0899674Z Receiving objects: 7% (13/185) 2023-10-03T22:41:32.0902387Z Receiving objects: 8% (15/185) 2023-10-03T22:41:32.0905105Z Receiving objects: 9% (17/185) 2023-10-03T22:41:32.0908509Z Receiving objects: 10% (19/185) 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2023-10-03T22:41:32.1059551Z Receiving objects: 43% (80/185) 2023-10-03T22:41:32.1065476Z Receiving objects: 44% (82/185) 2023-10-03T22:41:32.1065830Z Receiving objects: 45% (84/185) 2023-10-03T22:41:32.1066141Z Receiving objects: 46% (86/185) 2023-10-03T22:41:32.1066478Z Receiving objects: 47% (87/185) 2023-10-03T22:41:32.1066892Z Receiving objects: 48% (89/185) 2023-10-03T22:41:32.1079195Z Receiving objects: 49% (91/185) 2023-10-03T22:41:32.1079539Z Receiving objects: 50% (93/185) 2023-10-03T22:41:32.1079878Z Receiving objects: 51% (95/185) 2023-10-03T22:41:32.1080163Z Receiving objects: 52% (97/185) 2023-10-03T22:41:32.1080561Z Receiving objects: 53% (99/185) 2023-10-03T22:41:32.1080917Z Receiving objects: 54% (100/185) 2023-10-03T22:41:32.1081212Z Receiving objects: 55% (102/185) 2023-10-03T22:41:32.1081550Z Receiving objects: 56% (104/185) 2023-10-03T22:41:32.1081940Z Receiving objects: 57% (106/185) 2023-10-03T22:41:32.1082289Z Receiving objects: 58% (108/185) 2023-10-03T22:41:32.1082573Z Receiving objects: 59% (110/185) 2023-10-03T22:41:32.1082906Z Receiving objects: 60% (111/185) 2023-10-03T22:41:32.1083258Z Receiving objects: 61% (113/185) 2023-10-03T22:41:32.1083601Z Receiving objects: 62% (115/185) 2023-10-03T22:41:32.1084199Z Receiving objects: 63% (117/185) 2023-10-03T22:41:32.1223409Z Receiving objects: 64% (119/185) 2023-10-03T22:41:32.1226400Z remote: Total 185 (delta 34), reused 84 (delta 19), pack-reused 0 2023-10-03T22:41:32.1226745Z Receiving objects: 65% (121/185) 2023-10-03T22:41:32.1227011Z Receiving objects: 66% (123/185) 2023-10-03T22:41:32.1227265Z Receiving objects: 67% (124/185) 2023-10-03T22:41:32.1227529Z Receiving objects: 68% (126/185) 2023-10-03T22:41:32.1227792Z Receiving objects: 69% (128/185) 2023-10-03T22:41:32.1228050Z Receiving objects: 70% (130/185) 2023-10-03T22:41:32.1228297Z Receiving objects: 71% (132/185) 2023-10-03T22:41:32.1228554Z Receiving objects: 72% (134/185) 2023-10-03T22:41:32.1228813Z Receiving objects: 73% (136/185) 2023-10-03T22:41:32.1229061Z Receiving objects: 74% (137/185) 2023-10-03T22:41:32.1229311Z Receiving objects: 75% (139/185) 2023-10-03T22:41:32.1229571Z Receiving objects: 76% (141/185) 2023-10-03T22:41:32.1229829Z Receiving objects: 77% (143/185) 2023-10-03T22:41:32.1230085Z Receiving objects: 78% (145/185) 2023-10-03T22:41:32.1230404Z Receiving objects: 79% (147/185) 2023-10-03T22:41:32.1230662Z Receiving objects: 80% (148/185) 2023-10-03T22:41:32.1230909Z Receiving objects: 81% (150/185) 2023-10-03T22:41:32.1231167Z Receiving objects: 82% (152/185) 2023-10-03T22:41:32.1231424Z Receiving objects: 83% (154/185) 2023-10-03T22:41:32.1231671Z Receiving objects: 84% (156/185) 2023-10-03T22:41:32.1231927Z Receiving objects: 85% (158/185) 2023-10-03T22:41:32.1232181Z Receiving objects: 86% (160/185) 2023-10-03T22:41:32.1232426Z Receiving objects: 87% (161/185) 2023-10-03T22:41:32.1232681Z Receiving objects: 88% (163/185) 2023-10-03T22:41:32.1232936Z Receiving objects: 89% (165/185) 2023-10-03T22:41:32.1233181Z Receiving objects: 90% (167/185) 2023-10-03T22:41:32.1233437Z Receiving objects: 91% (169/185) 2023-10-03T22:41:32.1233691Z Receiving objects: 92% (171/185) 2023-10-03T22:41:32.1233936Z Receiving objects: 93% (173/185) 2023-10-03T22:41:32.1234194Z Receiving objects: 94% (174/185) 2023-10-03T22:41:32.1234703Z Receiving objects: 95% (176/185) 2023-10-03T22:41:32.1234950Z Receiving objects: 96% (178/185) 2023-10-03T22:41:32.1235203Z Receiving objects: 97% (180/185) 2023-10-03T22:41:32.1235461Z Receiving objects: 98% (182/185) 2023-10-03T22:41:32.1235714Z Receiving objects: 99% (184/185) 2023-10-03T22:41:32.1235958Z Receiving objects: 100% (185/185) 2023-10-03T22:41:32.1236260Z Receiving objects: 100% (185/185), 197.10 KiB | 7.58 MiB/s, done. 2023-10-03T22:41:32.1236560Z Resolving deltas: 0% (0/34) 2023-10-03T22:41:32.1236805Z Resolving deltas: 2% (1/34) 2023-10-03T22:41:32.1237061Z Resolving deltas: 5% (2/34) 2023-10-03T22:41:32.1237355Z Resolving deltas: 8% (3/34) 2023-10-03T22:41:32.1237599Z Resolving deltas: 11% (4/34) 2023-10-03T22:41:32.1237855Z Resolving deltas: 14% (5/34) 2023-10-03T22:41:32.1238103Z Resolving deltas: 17% (6/34) 2023-10-03T22:41:32.1238343Z Resolving deltas: 20% (7/34) 2023-10-03T22:41:32.1238610Z Resolving deltas: 23% (8/34) 2023-10-03T22:41:32.1238867Z Resolving deltas: 26% (9/34) 2023-10-03T22:41:32.1239107Z Resolving deltas: 29% (10/34) 2023-10-03T22:41:32.1239365Z Resolving deltas: 32% (11/34) 2023-10-03T22:41:32.1239621Z Resolving deltas: 35% (12/34) 2023-10-03T22:41:32.1242101Z Resolving deltas: 38% (13/34) 2023-10-03T22:41:32.1242350Z Resolving deltas: 41% (14/34) 2023-10-03T22:41:32.1242603Z Resolving deltas: 44% (15/34) 2023-10-03T22:41:32.1242844Z Resolving deltas: 47% (16/34) 2023-10-03T22:41:32.1243103Z Resolving deltas: 50% (17/34) 2023-10-03T22:41:32.1243357Z Resolving deltas: 52% (18/34) 2023-10-03T22:41:32.1245818Z Resolving deltas: 55% (19/34) 2023-10-03T22:41:32.1246062Z Resolving deltas: 58% (20/34) 2023-10-03T22:41:32.1246509Z Resolving deltas: 61% (21/34) 2023-10-03T22:41:32.1246764Z Resolving deltas: 64% (22/34) 2023-10-03T22:41:32.1247078Z Resolving deltas: 67% (23/34) 2023-10-03T22:41:32.1247329Z Resolving deltas: 70% (24/34) 2023-10-03T22:41:32.1247791Z Resolving deltas: 73% (25/34) 2023-10-03T22:41:32.1248047Z Resolving deltas: 76% (26/34) 2023-10-03T22:41:32.1248298Z Resolving deltas: 79% (27/34) 2023-10-03T22:41:32.1248679Z Resolving deltas: 82% (28/34) 2023-10-03T22:41:32.1248923Z Resolving deltas: 85% (29/34) 2023-10-03T22:41:32.1249175Z Resolving deltas: 88% (30/34) 2023-10-03T22:41:32.1249432Z Resolving deltas: 91% (31/34) 2023-10-03T22:41:32.1249674Z Resolving deltas: 94% (32/34) 2023-10-03T22:41:32.1249944Z Resolving deltas: 97% (33/34) 2023-10-03T22:41:32.1250196Z Resolving deltas: 100% (34/34) 2023-10-03T22:41:32.1250446Z Resolving deltas: 100% (34/34), done. 2023-10-03T22:41:32.1970198Z From https://github.com/ax3l/pyamrex 2023-10-03T22:41:32.1971249Z * [new branch] array4-numpy-copy-host -> origin/array4-numpy-copy-host 2023-10-03T22:41:32.1999947Z ##[endgroup] 2023-10-03T22:41:32.2000604Z ##[group]Determining the checkout info 2023-10-03T22:41:32.2002246Z [command]/usr/bin/git branch --list --remote origin/array4-numpy-copy-host 2023-10-03T22:41:32.2034461Z origin/array4-numpy-copy-host 2023-10-03T22:41:32.2040186Z ##[endgroup] 2023-10-03T22:41:32.2040813Z ##[group]Checking out the ref 2023-10-03T22:41:32.2044217Z [command]/usr/bin/git checkout --progress --force -B array4-numpy-copy-host refs/remotes/origin/array4-numpy-copy-host 2023-10-03T22:41:32.2206385Z Switched to a new branch 'array4-numpy-copy-host' 2023-10-03T22:41:32.2207146Z branch 'array4-numpy-copy-host' set up to track 'origin/array4-numpy-copy-host'. 2023-10-03T22:41:32.2215410Z ##[endgroup] 2023-10-03T22:41:32.2261382Z [command]/usr/bin/git log -1 --format='%H' 2023-10-03T22:41:32.2293793Z '1e5fc13d79cf8ff70c0a078f12ad7b21601e08fc' 2023-10-03T22:41:32.2639527Z ##[group]Run git pull 2023-10-03T22:41:32.2639864Z git pull 2023-10-03T22:41:32.2698645Z shell: /usr/bin/bash -e {0} 2023-10-03T22:41:32.2698918Z env: 2023-10-03T22:41:32.2699105Z CC: gcc 2023-10-03T22:41:32.2699306Z CXX: g++ 2023-10-03T22:41:32.2699519Z CXXFLAGS: -O1 2023-10-03T22:41:32.2699731Z OMP_NUM_THREAD: 2 2023-10-03T22:41:32.2700213Z ##[endgroup] 2023-10-03T22:41:32.7808659Z From https://github.com/ax3l/pyamrex 2023-10-03T22:41:32.7836563Z * [new branch] ci-ccache-win-clang -> origin/ci-ccache-win-clang 2023-10-03T22:41:32.7837042Z * [new branch] ci-code-ql -> origin/ci-code-ql 2023-10-03T22:41:32.7837500Z * [new branch] ci-win-check-exitcode -> origin/ci-win-check-exitcode 2023-10-03T22:41:32.7837969Z * [new branch] development -> origin/development 2023-10-03T22:41:32.7838423Z * [new branch] doc-impl-details -> origin/doc-impl-details 2023-10-03T22:41:32.7838954Z * [new branch] doc-pytorch-helper -> origin/doc-pytorch-helper 2023-10-03T22:41:32.7839450Z * [new branch] fix-cmake-vars-cache -> origin/fix-cmake-vars-cache 2023-10-03T22:41:32.7839918Z * [new branch] fix-include-guard -> origin/fix-include-guard 2023-10-03T22:41:32.7840728Z * [new branch] fix-multiConfig-nonCollide -> origin/fix-multiConfig-nonCollide 2023-10-03T22:41:32.7841311Z * [new branch] install-external-pybind11 -> origin/install-external-pybind11 2023-10-03T22:41:32.7841792Z * [new branch] topic-ctest -> origin/topic-ctest 2023-10-03T22:41:32.7842229Z * [new branch] topic-nanobind -> origin/topic-nanobind 2023-10-03T22:41:32.7842691Z * [new branch] topic-no-distutils -> origin/topic-no-distutils 2023-10-03T22:41:32.7843156Z * [new branch] topic-no-managed -> origin/topic-no-managed 2023-10-03T22:41:32.7843604Z * [new branch] topic-pc-more-soa -> origin/topic-pc-more-soa 2023-10-03T22:41:32.7844266Z * [new branch] update-amrex -> origin/update-amrex 2023-10-03T22:41:32.7864925Z Already up to date. 2023-10-03T22:41:32.7949401Z ##[group]Run actions/setup-python@v4 2023-10-03T22:41:32.7949663Z with: 2023-10-03T22:41:32.7949888Z python-version: 3.9 2023-10-03T22:41:32.7950137Z check-latest: false 2023-10-03T22:41:32.7950536Z token: *** 2023-10-03T22:41:32.7950764Z update-environment: true 2023-10-03T22:41:32.7951045Z allow-prereleases: false 2023-10-03T22:41:32.7951274Z env: 2023-10-03T22:41:32.7951450Z CC: gcc 2023-10-03T22:41:32.7951650Z CXX: g++ 2023-10-03T22:41:32.7951862Z CXXFLAGS: -O1 2023-10-03T22:41:32.7952072Z OMP_NUM_THREAD: 2 2023-10-03T22:41:32.7952295Z ##[endgroup] 2023-10-03T22:41:32.9699363Z ##[group]Installed versions 2023-10-03T22:41:32.9770781Z Successfully set up CPython (3.9.18) 2023-10-03T22:41:32.9771525Z ##[endgroup] 2023-10-03T22:41:32.9854993Z ##[group]Run .github/workflows/dependencies/dependencies_gcc10.sh 2023-10-03T22:41:32.9855423Z .github/workflows/dependencies/dependencies_gcc10.sh 2023-10-03T22:41:32.9855789Z .github/workflows/dependencies/dependencies_ccache.sh 2023-10-03T22:41:32.9914298Z shell: /usr/bin/bash -e {0} 2023-10-03T22:41:32.9914550Z env: 2023-10-03T22:41:32.9914733Z CC: gcc 2023-10-03T22:41:32.9914936Z CXX: g++ 2023-10-03T22:41:32.9915147Z CXXFLAGS: -O1 2023-10-03T22:41:32.9915359Z OMP_NUM_THREAD: 2 2023-10-03T22:41:32.9915686Z pythonLocation: /opt/hostedtoolcache/Python/3.9.18/x64 2023-10-03T22:41:32.9916073Z PKG_CONFIG_PATH: /opt/hostedtoolcache/Python/3.9.18/x64/lib/pkgconfig 2023-10-03T22:41:32.9916438Z Python_ROOT_DIR: /opt/hostedtoolcache/Python/3.9.18/x64 2023-10-03T22:41:32.9916788Z Python2_ROOT_DIR: /opt/hostedtoolcache/Python/3.9.18/x64 2023-10-03T22:41:32.9917133Z Python3_ROOT_DIR: /opt/hostedtoolcache/Python/3.9.18/x64 2023-10-03T22:41:32.9917583Z LD_LIBRARY_PATH: /opt/hostedtoolcache/Python/3.9.18/x64/lib 2023-10-03T22:41:32.9917891Z ##[endgroup] 2023-10-03T22:41:33.1932378Z Get:1 file:/etc/apt/apt-mirrors.txt Mirrorlist [142 B] 2023-10-03T22:41:33.2246306Z Get:6 https://packages.microsoft.com/ubuntu/22.04/prod jammy InRelease [3611 B] 2023-10-03T22:41:33.2456793Z Hit:2 http://azure.archive.ubuntu.com/ubuntu jammy InRelease 2023-10-03T22:41:33.2510239Z Get:3 http://azure.archive.ubuntu.com/ubuntu jammy-updates InRelease [119 kB] 2023-10-03T22:41:33.2531330Z Get:4 http://azure.archive.ubuntu.com/ubuntu jammy-backports InRelease [109 kB] 2023-10-03T22:41:33.2566929Z Get:5 http://azure.archive.ubuntu.com/ubuntu jammy-security InRelease [110 kB] 2023-10-03T22:41:33.3920819Z Get:7 https://packages.microsoft.com/ubuntu/22.04/prod jammy/main amd64 Packages [103 kB] 2023-10-03T22:41:33.4344284Z Get:8 https://packages.microsoft.com/ubuntu/22.04/prod jammy/main arm64 Packages [26.9 kB] 2023-10-03T22:41:33.6412460Z Get:9 http://azure.archive.ubuntu.com/ubuntu jammy-updates/main amd64 Packages [1022 kB] 2023-10-03T22:41:33.6533063Z Hit:20 https://ppa.launchpadcontent.net/ubuntu-toolchain-r/test/ubuntu jammy InRelease 2023-10-03T22:41:33.6597885Z Get:10 http://azure.archive.ubuntu.com/ubuntu jammy-updates/main Translation-en [229 kB] 2023-10-03T22:41:33.6853114Z Get:11 http://azure.archive.ubuntu.com/ubuntu jammy-updates/main amd64 c-n-f Metadata [15.6 kB] 2023-10-03T22:41:33.6914232Z Get:12 http://azure.archive.ubuntu.com/ubuntu jammy-updates/restricted amd64 Packages [915 kB] 2023-10-03T22:41:33.7017823Z Get:13 http://azure.archive.ubuntu.com/ubuntu jammy-updates/restricted Translation-en [147 kB] 2023-10-03T22:41:33.7046821Z Get:14 http://azure.archive.ubuntu.com/ubuntu jammy-updates/restricted amd64 c-n-f Metadata [532 B] 2023-10-03T22:41:33.7130355Z Get:15 http://azure.archive.ubuntu.com/ubuntu jammy-updates/universe amd64 Packages [987 kB] 2023-10-03T22:41:33.7261072Z Get:16 http://azure.archive.ubuntu.com/ubuntu jammy-updates/universe Translation-en [216 kB] 2023-10-03T22:41:33.7267717Z Get:17 http://azure.archive.ubuntu.com/ubuntu jammy-updates/universe amd64 c-n-f Metadata [21.9 kB] 2023-10-03T22:41:33.7286215Z Get:18 http://azure.archive.ubuntu.com/ubuntu jammy-updates/multiverse amd64 Packages [41.6 kB] 2023-10-03T22:41:33.7743563Z Get:19 http://azure.archive.ubuntu.com/ubuntu jammy-updates/multiverse amd64 c-n-f Metadata [472 B] 2023-10-03T22:41:33.9581471Z Get:21 http://azure.archive.ubuntu.com/ubuntu jammy-backports/universe amd64 Packages [24.3 kB] 2023-10-03T22:41:33.9596775Z Get:22 http://azure.archive.ubuntu.com/ubuntu jammy-backports/universe amd64 c-n-f Metadata [640 B] 2023-10-03T22:41:34.0692673Z Get:23 http://azure.archive.ubuntu.com/ubuntu jammy-security/main amd64 Packages [822 kB] 2023-10-03T22:41:34.0771354Z Get:24 http://azure.archive.ubuntu.com/ubuntu jammy-security/main Translation-en [171 kB] 2023-10-03T22:41:34.0789482Z Get:25 http://azure.archive.ubuntu.com/ubuntu jammy-security/main amd64 c-n-f Metadata [11.3 kB] 2023-10-03T22:41:34.0857150Z Get:26 http://azure.archive.ubuntu.com/ubuntu jammy-security/restricted amd64 Packages [899 kB] 2023-10-03T22:41:34.0945052Z Get:27 http://azure.archive.ubuntu.com/ubuntu jammy-security/restricted Translation-en [145 kB] 2023-10-03T22:41:34.0959206Z Get:28 http://azure.archive.ubuntu.com/ubuntu jammy-security/restricted amd64 c-n-f Metadata [532 B] 2023-10-03T22:41:34.0970016Z Get:29 http://azure.archive.ubuntu.com/ubuntu jammy-security/universe amd64 Packages [786 kB] 2023-10-03T22:41:34.1080796Z Get:30 http://azure.archive.ubuntu.com/ubuntu jammy-security/universe Translation-en [144 kB] 2023-10-03T22:41:34.1102473Z Get:31 http://azure.archive.ubuntu.com/ubuntu jammy-security/universe amd64 c-n-f Metadata [16.7 kB] 2023-10-03T22:41:34.1122610Z Get:32 http://azure.archive.ubuntu.com/ubuntu jammy-security/multiverse amd64 Packages [36.5 kB] 2023-10-03T22:41:34.1144733Z Get:33 http://azure.archive.ubuntu.com/ubuntu jammy-security/multiverse amd64 c-n-f Metadata [260 B] 2023-10-03T22:41:42.3110244Z Fetched 7124 kB in 2s (4545 kB/s) 2023-10-03T22:41:43.1682444Z Reading package lists... 2023-10-03T22:41:43.2400081Z Reading package lists... 2023-10-03T22:41:43.4207328Z Building dependency tree... 2023-10-03T22:41:43.4219758Z Reading state information... 2023-10-03T22:41:43.5685133Z build-essential is already the newest version (12.9ubuntu3). 2023-10-03T22:41:43.5686229Z build-essential set to manually installed. 2023-10-03T22:41:43.5687328Z g++-10 is already the newest version (10.5.0-1ubuntu1~22.04). 2023-10-03T22:41:43.5687740Z The following additional packages will be installed: 2023-10-03T22:41:43.5688882Z ibverbs-providers libevent-2.1-7 libevent-dev libevent-extra-2.1-7 2023-10-03T22:41:43.5689405Z libevent-openssl-2.1-7 libfabric1 libhwloc-dev libhwloc-plugins libhwloc15 2023-10-03T22:41:43.5689933Z libibverbs-dev libibverbs1 libjs-jquery-ui libnl-3-dev libnl-route-3-200 2023-10-03T22:41:43.5690430Z libnl-route-3-dev libnuma-dev libopenmpi3 libpmix-dev libpmix2 2023-10-03T22:41:43.5695653Z libpsm-infinipath1 libpsm2-2 librdmacm1 libucx0 libxnvctrl0 2023-10-03T22:41:43.5697891Z ocl-icd-libopencl1 openmpi-common 2023-10-03T22:41:43.5704954Z Suggested packages: 2023-10-03T22:41:43.5705697Z libhwloc-contrib-plugins libjs-jquery-ui-docs openmpi-doc opencl-icd 2023-10-03T22:41:43.5706510Z Recommended packages: 2023-10-03T22:41:43.5706937Z libcoarrays-openmpi-dev 2023-10-03T22:41:43.5917089Z The following NEW packages will be installed: 2023-10-03T22:41:43.5917814Z ibverbs-providers libevent-2.1-7 libevent-dev libevent-extra-2.1-7 2023-10-03T22:41:43.5920413Z libevent-openssl-2.1-7 libfabric1 libhwloc-dev libhwloc-plugins libhwloc15 2023-10-03T22:41:43.5921241Z libibverbs-dev libibverbs1 libjs-jquery-ui libnl-3-dev libnl-route-3-200 2023-10-03T22:41:43.5922051Z libnl-route-3-dev libnuma-dev libopenmpi-dev libopenmpi3 libpmix-dev 2023-10-03T22:41:43.5925291Z libpmix2 libpsm-infinipath1 libpsm2-2 librdmacm1 libucx0 libxnvctrl0 2023-10-03T22:41:43.5927279Z ocl-icd-libopencl1 openmpi-bin openmpi-common 2023-10-03T22:41:43.6105259Z 0 upgraded, 28 newly installed, 0 to remove and 43 not upgraded. 2023-10-03T22:41:43.6105933Z Need to get 9819 kB of archives. 2023-10-03T22:41:43.6106516Z After this operation, 45.0 MB of additional disk space will be used. 2023-10-03T22:41:43.6107303Z Get:1 file:/etc/apt/apt-mirrors.txt Mirrorlist [142 B] 2023-10-03T22:41:43.6451645Z Get:2 http://azure.archive.ubuntu.com/ubuntu jammy/main amd64 libnl-route-3-200 amd64 3.5.0-0.1 [180 kB] 2023-10-03T22:41:43.6617921Z Get:3 http://azure.archive.ubuntu.com/ubuntu jammy/main amd64 libibverbs1 amd64 39.0-1 [69.3 kB] 2023-10-03T22:41:43.6753361Z Get:4 http://azure.archive.ubuntu.com/ubuntu jammy/main amd64 ibverbs-providers amd64 39.0-1 [341 kB] 2023-10-03T22:41:43.6943402Z Get:5 http://azure.archive.ubuntu.com/ubuntu jammy/main amd64 libevent-2.1-7 amd64 2.1.12-stable-1build3 [148 kB] 2023-10-03T22:41:43.7088052Z Get:6 http://azure.archive.ubuntu.com/ubuntu jammy/main amd64 libevent-extra-2.1-7 amd64 2.1.12-stable-1build3 [65.4 kB] 2023-10-03T22:41:43.7232376Z Get:7 http://azure.archive.ubuntu.com/ubuntu jammy/main amd64 libevent-openssl-2.1-7 amd64 2.1.12-stable-1build3 [15.8 kB] 2023-10-03T22:41:43.7374479Z Get:8 http://azure.archive.ubuntu.com/ubuntu jammy/main amd64 libevent-dev amd64 2.1.12-stable-1build3 [278 kB] 2023-10-03T22:41:43.7530629Z Get:9 http://azure.archive.ubuntu.com/ubuntu jammy/universe amd64 libpsm-infinipath1 amd64 3.3+20.604758e7-6.1 [170 kB] 2023-10-03T22:41:43.7686400Z Get:10 http://azure.archive.ubuntu.com/ubuntu jammy/universe amd64 libpsm2-2 amd64 11.2.185-1 [182 kB] 2023-10-03T22:41:43.7839557Z Get:11 http://azure.archive.ubuntu.com/ubuntu jammy/main amd64 librdmacm1 amd64 39.0-1 [71.2 kB] 2023-10-03T22:41:43.7978302Z Get:12 http://azure.archive.ubuntu.com/ubuntu jammy/universe amd64 libfabric1 amd64 1.11.0-3 [558 kB] 2023-10-03T22:41:43.8176874Z Get:13 http://azure.archive.ubuntu.com/ubuntu jammy-updates/universe amd64 libhwloc15 amd64 2.7.0-2ubuntu1 [159 kB] 2023-10-03T22:41:43.8330166Z Get:14 http://azure.archive.ubuntu.com/ubuntu jammy/universe amd64 libjs-jquery-ui all 1.13.1+dfsg-1 [253 kB] 2023-10-03T22:41:43.8508752Z Get:15 http://azure.archive.ubuntu.com/ubuntu jammy/main amd64 libnl-3-dev amd64 3.5.0-0.1 [101 kB] 2023-10-03T22:41:43.8653739Z Get:16 http://azure.archive.ubuntu.com/ubuntu jammy/main amd64 libnl-route-3-dev amd64 3.5.0-0.1 [202 kB] 2023-10-03T22:41:43.8814357Z Get:17 http://azure.archive.ubuntu.com/ubuntu jammy/main amd64 libxnvctrl0 amd64 510.47.03-0ubuntu1 [11.5 kB] 2023-10-03T22:41:43.8961232Z Get:18 http://azure.archive.ubuntu.com/ubuntu jammy/universe amd64 ocl-icd-libopencl1 amd64 2.2.14-3 [39.1 kB] 2023-10-03T22:41:43.9088631Z Get:19 http://azure.archive.ubuntu.com/ubuntu jammy-updates/universe amd64 libhwloc-plugins amd64 2.7.0-2ubuntu1 [15.6 kB] 2023-10-03T22:41:43.9700701Z Get:20 http://azure.archive.ubuntu.com/ubuntu jammy/universe amd64 libpmix2 amd64 4.1.2-2ubuntu1 [604 kB] 2023-10-03T22:41:43.9895776Z Get:21 http://azure.archive.ubuntu.com/ubuntu jammy/universe amd64 libucx0 amd64 1.12.1~rc2-1 [891 kB] 2023-10-03T22:41:44.0113348Z Get:22 http://azure.archive.ubuntu.com/ubuntu jammy/universe amd64 libopenmpi3 amd64 4.1.2-2ubuntu1 [2594 kB] 2023-10-03T22:41:44.0544875Z Get:23 http://azure.archive.ubuntu.com/ubuntu jammy/main amd64 libnuma-dev amd64 2.0.14-3ubuntu2 [35.9 kB] 2023-10-03T22:41:44.0681123Z Get:24 http://azure.archive.ubuntu.com/ubuntu jammy-updates/universe amd64 libhwloc-dev amd64 2.7.0-2ubuntu1 [256 kB] 2023-10-03T22:41:44.0840335Z Get:25 http://azure.archive.ubuntu.com/ubuntu jammy/universe amd64 libpmix-dev amd64 4.1.2-2ubuntu1 [805 kB] 2023-10-03T22:41:44.1103186Z Get:26 http://azure.archive.ubuntu.com/ubuntu jammy/universe amd64 openmpi-common all 4.1.2-2ubuntu1 [162 kB] 2023-10-03T22:41:44.1247704Z Get:27 http://azure.archive.ubuntu.com/ubuntu jammy/universe amd64 openmpi-bin amd64 4.1.2-2ubuntu1 [116 kB] 2023-10-03T22:41:44.1389334Z Get:28 http://azure.archive.ubuntu.com/ubuntu jammy/main amd64 libibverbs-dev amd64 39.0-1 [628 kB] 2023-10-03T22:41:44.1593949Z Get:29 http://azure.archive.ubuntu.com/ubuntu jammy/universe amd64 libopenmpi-dev amd64 4.1.2-2ubuntu1 [867 kB] 2023-10-03T22:41:44.5403614Z Fetched 9819 kB in 1s (17.1 MB/s) 2023-10-03T22:41:44.5777776Z Selecting previously unselected package libnl-route-3-200:amd64. 2023-10-03T22:41:44.5986552Z (Reading database ... 2023-10-03T22:41:44.5986867Z (Reading database ... 5% 2023-10-03T22:41:44.5987124Z (Reading database ... 10% 2023-10-03T22:41:44.5987375Z (Reading database ... 15% 2023-10-03T22:41:44.5989079Z (Reading database ... 20% 2023-10-03T22:41:44.5989539Z (Reading database ... 25% 2023-10-03T22:41:44.5989779Z (Reading database ... 30% 2023-10-03T22:41:44.5990030Z (Reading database ... 35% 2023-10-03T22:41:44.5990280Z (Reading database ... 40% 2023-10-03T22:41:44.5990511Z (Reading database ... 45% 2023-10-03T22:41:44.5990755Z (Reading database ... 50% 2023-10-03T22:41:44.6316314Z (Reading database ... 55% 2023-10-03T22:41:44.6593370Z (Reading database ... 60% 2023-10-03T22:41:44.6826903Z (Reading database ... 65% 2023-10-03T22:41:44.7310493Z (Reading database ... 70% 2023-10-03T22:41:44.7775078Z (Reading database ... 75% 2023-10-03T22:41:44.8378212Z (Reading database ... 80% 2023-10-03T22:41:44.9115560Z (Reading database ... 85% 2023-10-03T22:41:44.9462747Z (Reading database ... 90% 2023-10-03T22:41:44.9982991Z (Reading database ... 95% 2023-10-03T22:41:44.9983744Z (Reading database ... 100% 2023-10-03T22:41:44.9985195Z (Reading database ... 225309 files and directories currently installed.) 2023-10-03T22:41:45.0080372Z Preparing to unpack .../00-libnl-route-3-200_3.5.0-0.1_amd64.deb ... 2023-10-03T22:41:45.0141478Z Unpacking libnl-route-3-200:amd64 (3.5.0-0.1) ... 2023-10-03T22:41:45.0904988Z Selecting previously unselected package libibverbs1:amd64. 2023-10-03T22:41:45.1126442Z Preparing to unpack .../01-libibverbs1_39.0-1_amd64.deb ... 2023-10-03T22:41:45.1141009Z Unpacking libibverbs1:amd64 (39.0-1) ... 2023-10-03T22:41:45.1582569Z Selecting previously unselected package ibverbs-providers:amd64. 2023-10-03T22:41:45.1804976Z Preparing to unpack .../02-ibverbs-providers_39.0-1_amd64.deb ... 2023-10-03T22:41:45.1973632Z Unpacking ibverbs-providers:amd64 (39.0-1) ... 2023-10-03T22:41:45.2794325Z Selecting previously unselected package libevent-2.1-7:amd64. 2023-10-03T22:41:45.3013673Z Preparing to unpack .../03-libevent-2.1-7_2.1.12-stable-1build3_amd64.deb ... 2023-10-03T22:41:45.3025597Z Unpacking libevent-2.1-7:amd64 (2.1.12-stable-1build3) ... 2023-10-03T22:41:45.3397128Z Selecting previously unselected package libevent-extra-2.1-7:amd64. 2023-10-03T22:41:45.3618448Z Preparing to unpack .../04-libevent-extra-2.1-7_2.1.12-stable-1build3_amd64.deb ... 2023-10-03T22:41:45.3630978Z Unpacking libevent-extra-2.1-7:amd64 (2.1.12-stable-1build3) ... 2023-10-03T22:41:45.4098283Z Selecting previously unselected package libevent-openssl-2.1-7:amd64. 2023-10-03T22:41:45.4320135Z Preparing to unpack .../05-libevent-openssl-2.1-7_2.1.12-stable-1build3_amd64.deb ... 2023-10-03T22:41:45.4421677Z Unpacking libevent-openssl-2.1-7:amd64 (2.1.12-stable-1build3) ... 2023-10-03T22:41:45.4713708Z Selecting previously unselected package libevent-dev. 2023-10-03T22:41:45.4934260Z Preparing to unpack .../06-libevent-dev_2.1.12-stable-1build3_amd64.deb ... 2023-10-03T22:41:45.4943679Z Unpacking libevent-dev (2.1.12-stable-1build3) ... 2023-10-03T22:41:45.6405411Z Selecting previously unselected package libpsm-infinipath1. 2023-10-03T22:41:45.6626968Z Preparing to unpack .../07-libpsm-infinipath1_3.3+20.604758e7-6.1_amd64.deb ... 2023-10-03T22:41:45.6636211Z Unpacking libpsm-infinipath1 (3.3+20.604758e7-6.1) ... 2023-10-03T22:41:45.7363269Z Selecting previously unselected package libpsm2-2. 2023-10-03T22:41:45.7584677Z Preparing to unpack .../08-libpsm2-2_11.2.185-1_amd64.deb ... 2023-10-03T22:41:45.7594778Z Unpacking libpsm2-2 (11.2.185-1) ... 2023-10-03T22:41:45.8113283Z Selecting previously unselected package librdmacm1:amd64. 2023-10-03T22:41:45.8334748Z Preparing to unpack .../09-librdmacm1_39.0-1_amd64.deb ... 2023-10-03T22:41:45.8345315Z Unpacking librdmacm1:amd64 (39.0-1) ... 2023-10-03T22:41:45.8811036Z Selecting previously unselected package libfabric1:amd64. 2023-10-03T22:41:45.9031923Z Preparing to unpack .../10-libfabric1_1.11.0-3_amd64.deb ... 2023-10-03T22:41:45.9042940Z Unpacking libfabric1:amd64 (1.11.0-3) ... 2023-10-03T22:41:45.9536693Z Selecting previously unselected package libhwloc15:amd64. 2023-10-03T22:41:45.9757240Z Preparing to unpack .../11-libhwloc15_2.7.0-2ubuntu1_amd64.deb ... 2023-10-03T22:41:45.9770672Z Unpacking libhwloc15:amd64 (2.7.0-2ubuntu1) ... 2023-10-03T22:41:46.0115991Z Selecting previously unselected package libjs-jquery-ui. 2023-10-03T22:41:46.0335703Z Preparing to unpack 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468.9/468.9 kB 85.6 MB/s eta 0:00:00 2023-10-03T22:42:01.6217894Z Downloading filelock-3.12.4-py3-none-any.whl (11 kB) 2023-10-03T22:42:01.6276905Z Downloading platformdirs-3.11.0-py3-none-any.whl (17 kB) 2023-10-03T22:42:01.6882127Z Building wheels for collected packages: mpi4py 2023-10-03T22:42:01.6890715Z Building wheel for mpi4py (pyproject.toml): started 2023-10-03T22:42:52.9764849Z Building wheel for mpi4py (pyproject.toml): finished with status 'done' 2023-10-03T22:42:52.9873133Z Created wheel for mpi4py: filename=mpi4py-3.1.4-cp39-cp39-linux_x86_64.whl size=3194852 sha256=d0269abf89985c78d1b544540969ce148112fc3375ac1b214c8849b1bbbb5039 2023-10-03T22:42:52.9878030Z Stored in directory: /home/runner/.cache/pip/wheels/db/81/9f/43a031fce121c845baca1c5d9a1468cad98208286aa2832de9 2023-10-03T22:42:52.9913413Z Successfully built mpi4py 2023-10-03T22:42:53.0743118Z Installing collected packages: distlib, tomli, pyyaml, pybind11-stubgen, pluggy, platformdirs, packaging, nodeenv, mpi4py, iniconfig, identify, filelock, exceptiongroup, cfgv, virtualenv, pytest, pre-commit 2023-10-03T22:42:53.9350907Z Successfully installed cfgv-3.4.0 distlib-0.3.7 exceptiongroup-1.1.3 filelock-3.12.4 identify-2.5.30 iniconfig-2.0.0 mpi4py-3.1.4 nodeenv-1.8.0 packaging-23.2 platformdirs-3.11.0 pluggy-1.3.0 pre-commit-3.4.0 pybind11-stubgen-2.3 pytest-7.4.2 pyyaml-6.0.1 tomli-2.0.1 virtualenv-20.24.5 2023-10-03T22:42:54.2395711Z -- The C compiler identification is GNU 11.4.0 2023-10-03T22:42:54.3686881Z -- The CXX compiler identification is GNU 11.4.0 2023-10-03T22:42:54.3914580Z -- Detecting C compiler ABI info 2023-10-03T22:42:54.4634425Z -- Detecting C compiler ABI info - done 2023-10-03T22:42:54.4778055Z -- Check for working C compiler: /usr/bin/gcc - skipped 2023-10-03T22:42:54.4786388Z -- Detecting C compile features 2023-10-03T22:42:54.4794532Z -- Detecting C compile features - done 2023-10-03T22:42:54.4902184Z -- Detecting CXX compiler ABI info 2023-10-03T22:42:54.5700709Z -- Detecting CXX compiler ABI info - done 2023-10-03T22:42:54.5842748Z -- Check for working CXX compiler: /usr/bin/g++ - skipped 2023-10-03T22:42:54.5846735Z -- Detecting CXX compile features 2023-10-03T22:42:54.5853947Z -- Detecting CXX compile features - done 2023-10-03T22:42:54.5864485Z CMake Deprecation Warning at CMakeLists.txt:22 (cmake_policy): 2023-10-03T22:42:54.5865008Z The OLD behavior for policy CMP0104 will be removed from a future version 2023-10-03T22:42:54.5865416Z of CMake. 2023-10-03T22:42:54.5865617Z 2023-10-03T22:42:54.5865988Z The cmake-policies(7) manual explains that the OLD behaviors of all 2023-10-03T22:42:54.5866509Z policies are deprecated and that a policy should be set to OLD only under 2023-10-03T22:42:54.5867169Z specific short-term circumstances. Projects should be ported to the NEW 2023-10-03T22:42:54.5867650Z behavior and not rely on setting a policy to OLD. 2023-10-03T22:42:54.5867928Z 2023-10-03T22:42:54.5868000Z 2023-10-03T22:42:54.5868683Z CMake Deprecation Warning at CMakeLists.txt:27 (cmake_policy): 2023-10-03T22:42:54.5869208Z The OLD behavior for policy CMP0105 will be removed from a future version 2023-10-03T22:42:54.5869780Z of CMake. 2023-10-03T22:42:54.5869992Z 2023-10-03T22:42:54.5870341Z The cmake-policies(7) manual explains that the OLD behaviors of all 2023-10-03T22:42:54.5870859Z policies are deprecated and that a policy should be set to OLD only under 2023-10-03T22:42:54.5871446Z specific short-term circumstances. Projects should be ported to the NEW 2023-10-03T22:42:54.5871923Z behavior and not rely on setting a policy to OLD. 2023-10-03T22:42:54.5872203Z 2023-10-03T22:42:54.5872277Z 2023-10-03T22:42:54.5949155Z -- Downloading AMReX ... 2023-10-03T22:42:54.5950708Z -- AMReX repository: https://github.com/AMReX-Codes/amrex.git (23.09) 2023-10-03T22:43:01.3393835Z CMake Deprecation Warning at build/_deps/fetchedamrex-src/CMakeLists.txt:26 (cmake_policy): 2023-10-03T22:43:01.3394745Z The OLD behavior for policy CMP0104 will be removed from a future version 2023-10-03T22:43:01.3395921Z of CMake. 2023-10-03T22:43:01.3396260Z 2023-10-03T22:43:01.3396697Z The cmake-policies(7) manual explains that the OLD behaviors of all 2023-10-03T22:43:01.3397315Z policies are deprecated and that a policy should be set to OLD only under 2023-10-03T22:43:01.3446455Z specific short-term circumstances. Projects should be ported to the NEW 2023-10-03T22:43:01.3446879Z behavior and not rely on setting a policy to OLD. 2023-10-03T22:43:01.3447090Z 2023-10-03T22:43:01.3447097Z 2023-10-03T22:43:01.4499816Z -- CMake version: 3.27.6 2023-10-03T22:43:01.4500628Z -- AMReX installation directory: /usr/local 2023-10-03T22:43:01.4501484Z -- Build type set by user to 'Release'. 2023-10-03T22:43:01.4557655Z -- Building AMReX with AMReX_SPACEDIM = 1;2;3 2023-10-03T22:43:01.4558279Z -- Configuring AMReX with the following options enabled: 2023-10-03T22:43:01.4558855Z -- AMReX_PRECISION = DOUBLE 2023-10-03T22:43:01.4564696Z -- AMReX_MPI 2023-10-03T22:43:01.4566044Z -- AMReX_AMRLEVEL 2023-10-03T22:43:01.4567605Z -- AMReX_LINEAR_SOLVERS 2023-10-03T22:43:01.4569250Z -- AMReX_PARTICLES 2023-10-03T22:43:01.4569764Z -- AMReX_PARTICLES_PRECISION = DOUBLE 2023-10-03T22:43:01.4576767Z -- AMReX_PIC 2023-10-03T22:43:01.4584274Z -- AMReX_PROBINIT 2023-10-03T22:43:01.4719403Z -- Performing Test CMAKE_HAVE_LIBC_PTHREAD 2023-10-03T22:43:01.5370685Z -- Performing Test CMAKE_HAVE_LIBC_PTHREAD - Success 2023-10-03T22:43:01.5379900Z -- Found Threads: TRUE 2023-10-03T22:43:01.6695089Z -- Found MPI_C: /usr/lib/x86_64-linux-gnu/openmpi/lib/libmpi.so (found version "3.1") 2023-10-03T22:43:03.1796269Z -- Found MPI_CXX: /usr/lib/x86_64-linux-gnu/openmpi/lib/libmpi_cxx.so (found version "3.1") 2023-10-03T22:43:03.1803598Z -- Found MPI: TRUE (found version "3.1") found components: C CXX 2023-10-03T22:43:03.1984084Z -- AMReX configuration summary: 2023-10-03T22:43:03.1984498Z -- Build type = Release 2023-10-03T22:43:03.1984886Z -- Install directory = /usr/local 2023-10-03T22:43:03.1985248Z -- C++ compiler = /usr/bin/g++ 2023-10-03T22:43:03.1987207Z -- C++ defines = -DAMREX_SPACEDIM=3 2023-10-03T22:43:03.1987972Z -- C++ flags = -O3 -DNDEBUG -O1 2023-10-03T22:43:03.1990749Z -- C++ include paths = -I/home/runner/work/pyamrex/pyamrex/build/_deps/fetchedamrex-src/Src/Base -I/home/runner/work/pyamrex/pyamrex/build/_deps/fetchedamrex-src/Src/Base/Parser -I/home/runner/work/pyamrex/pyamrex/build/_deps/fetchedamrex-src/Src/Boundary -I/home/runner/work/pyamrex/pyamrex/build/_deps/fetchedamrex-src/Src/AmrCore -I/home/runner/work/pyamrex/pyamrex/build/_deps/fetchedamrex-src/Src/Amr -I/home/runner/work/pyamrex/pyamrex/build/_deps/fetchedamrex-src/Src/LinearSolvers/MLMG -I/home/runner/work/pyamrex/pyamrex/build/_deps/fetchedamrex-src/Src/LinearSolvers/OpenBC -I/home/runner/work/pyamrex/pyamrex/build/_deps/fetchedamrex-src/Src/Particle -I/usr/lib/x86_64-linux-gnu/openmpi/include -I/usr/lib/x86_64-linux-gnu/openmpi/include/openmpi 2023-10-03T22:43:03.1992377Z -- Link line = /usr/lib/x86_64-linux-gnu/openmpi/lib/libmpi.so /usr/lib/x86_64-linux-gnu/openmpi/lib/libmpi_cxx.so 2023-10-03T22:43:03.2196348Z -- AMReX: Using version '23.09' (23.09) 2023-10-03T22:43:03.4984634Z -- Found Python: /opt/hostedtoolcache/Python/3.9.18/x64/bin/python3.9 (found version "3.9.18") found components: Interpreter Development.Module 2023-10-03T22:43:03.4988296Z -- Downloading pybind11 ... 2023-10-03T22:43:03.4989445Z -- pybind11 repository: https://github.com/pybind/pybind11.git (v2.10.1) 2023-10-03T22:43:05.0275356Z CMake Deprecation Warning at build/_deps/fetchedpybind11-src/CMakeLists.txt:8 (cmake_minimum_required): 2023-10-03T22:43:05.0276269Z Compatibility with CMake < 3.5 will be removed from a future version of 2023-10-03T22:43:05.0276810Z CMake. 2023-10-03T22:43:05.0279276Z 2023-10-03T22:43:05.0279611Z Update the VERSION argument value or use a ... suffix to tell 2023-10-03T22:43:05.0280165Z CMake that the project does not need compatibility with older versions. 2023-10-03T22:43:05.0326233Z 2023-10-03T22:43:05.0326245Z 2023-10-03T22:43:05.0326723Z -- pybind11 v2.10.1 2023-10-03T22:43:05.2061180Z -- Performing Test HAS_FLTO 2023-10-03T22:43:06.1587584Z -- Performing Test HAS_FLTO - Success 2023-10-03T22:43:06.1641001Z -- Found Git: /usr/bin/git (found version "2.42.0") 2023-10-03T22:43:06.1978956Z 2023-10-03T22:43:06.1979651Z pyAMReX build configuration: 2023-10-03T22:43:06.1980261Z Version: 23.09 2023-10-03T22:43:06.1981173Z C++ Compiler: GNU 11.4.0 2023-10-03T22:43:06.1981842Z /usr/bin/g++ 2023-10-03T22:43:06.1982164Z 2023-10-03T22:43:06.1982422Z Installation prefix: /usr/local 2023-10-03T22:43:06.1982833Z bin: bin 2023-10-03T22:43:06.1983201Z lib: lib 2023-10-03T22:43:06.1983631Z include: include 2023-10-03T22:43:06.1985214Z cmake: lib/cmake/pyAMReX 2023-10-03T22:43:06.1985996Z python: lib/python3.9/site-packages 2023-10-03T22:43:06.1986318Z 2023-10-03T22:43:06.1986568Z Build type: Release 2023-10-03T22:43:06.1986874Z 2023-10-03T22:43:06.1991655Z -- Configuring done (12.0s) 2023-10-03T22:43:06.3590897Z -- Generating done (0.1s) 2023-10-03T22:43:06.3640391Z -- Build files have been written to: /home/runner/work/pyamrex/pyamrex/build 2023-10-03T22:43:06.4104623Z [ 0%] Building CXX object 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2023-10-03T22:45:07.9436662Z [ 84%] Building CXX object CMakeFiles/pyAMReX_1d.dir/src/Base/Periodicity.cpp.o 2023-10-03T22:45:07.9522827Z [ 84%] Building CXX object CMakeFiles/pyAMReX_1d.dir/src/Base/PlotFileUtil.cpp.o 2023-10-03T22:45:07.9614170Z [ 84%] Building CXX object CMakeFiles/pyAMReX_1d.dir/src/Base/PODVector.cpp.o 2023-10-03T22:45:09.2760005Z [ 84%] Building CXX object CMakeFiles/pyAMReX_2d.dir/src/Base/ParallelDescriptor.cpp.o 2023-10-03T22:45:09.2844699Z [ 84%] Building CXX object CMakeFiles/pyAMReX_2d.dir/src/Base/ParmParse.cpp.o 2023-10-03T22:45:09.2930949Z [ 85%] Building CXX object CMakeFiles/pyAMReX_2d.dir/src/Base/Periodicity.cpp.o 2023-10-03T22:45:09.3013461Z [ 85%] Building CXX object CMakeFiles/pyAMReX_2d.dir/src/Base/PlotFileUtil.cpp.o 2023-10-03T22:45:09.3100202Z [ 85%] Building CXX object CMakeFiles/pyAMReX_2d.dir/src/Base/PODVector.cpp.o 2023-10-03T22:45:20.1875297Z [ 85%] Building CXX object CMakeFiles/pyAMReX_1d.dir/src/Base/Utility.cpp.o 2023-10-03T22:45:20.1962783Z [ 86%] Building CXX object CMakeFiles/pyAMReX_1d.dir/src/Base/Vector.cpp.o 2023-10-03T22:45:20.2064463Z [ 86%] Building CXX object CMakeFiles/pyAMReX_1d.dir/src/Base/Version.cpp.o 2023-10-03T22:45:20.2144027Z [ 86%] Building CXX object CMakeFiles/pyAMReX_1d.dir/src/Particle/Particle.cpp.o 2023-10-03T22:45:20.2310616Z [ 86%] Building CXX object CMakeFiles/pyAMReX_1d.dir/src/Particle/StructOfArrays.cpp.o 2023-10-03T22:45:20.2418883Z [ 86%] Building CXX object CMakeFiles/pyAMReX_1d.dir/src/Particle/ArrayOfStructs.cpp.o 2023-10-03T22:45:20.2522867Z [ 87%] Building CXX object CMakeFiles/pyAMReX_1d.dir/src/Particle/ParticleTile.cpp.o 2023-10-03T22:45:20.2645410Z [ 87%] Building CXX object CMakeFiles/pyAMReX_1d.dir/src/Particle/ParticleContainer.cpp.o 2023-10-03T22:45:20.2777888Z [ 87%] Building CXX object CMakeFiles/pyAMReX_1d.dir/src/Particle/ParticleContainer_HiPACE.cpp.o 2023-10-03T22:45:20.2866515Z [ 87%] Building CXX object CMakeFiles/pyAMReX_1d.dir/src/Particle/ParticleContainer_ImpactX.cpp.o 2023-10-03T22:45:20.3023351Z [ 87%] Building CXX object CMakeFiles/pyAMReX_1d.dir/src/Particle/ParticleContainer_WarpX.cpp.o 2023-10-03T22:45:20.3154358Z [ 88%] Linking CXX shared module lib/site-packages/amrex/space1d/amrex_1d_pybind.cpython-39-x86_64-linux-gnu.so 2023-10-03T22:45:21.4748401Z [ 88%] Building CXX object CMakeFiles/pyAMReX_2d.dir/src/Base/Utility.cpp.o 2023-10-03T22:45:21.4837987Z [ 88%] Building CXX object CMakeFiles/pyAMReX_2d.dir/src/Base/Vector.cpp.o 2023-10-03T22:45:21.4944250Z [ 89%] Building CXX object CMakeFiles/pyAMReX_2d.dir/src/Base/Version.cpp.o 2023-10-03T22:45:21.5029338Z [ 89%] Building CXX object CMakeFiles/pyAMReX_2d.dir/src/Particle/Particle.cpp.o 2023-10-03T22:45:21.5111255Z In file included from /home/runner/work/pyamrex/pyamrex/src/Particle/Particle.cpp:11: 2023-10-03T22:45:21.5113645Z /home/runner/work/pyamrex/pyamrex/build/_deps/fetchedamrex-src/Src/Base/AMReX_RealVect.H: In static member function ‘static pybind11::handle pybind11::cpp_function::initialize(pybind11::module&)::, void, amrex::Particle<4, 0>&, const amrex::RealVect&, pybind11::name, pybind11::is_method, pybind11::sibling>(make_Particle<4, 0>(pybind11::module&)::&&, void (*)(amrex::Particle<4, 0>&, const amrex::RealVect&), const pybind11::name&, const pybind11::is_method&, const pybind11::sibling&)::::_FUN(pybind11::detail::function_call&)’: 2023-10-03T22:45:21.5115296Z /home/runner/work/pyamrex/pyamrex/build/_deps/fetchedamrex-src/Src/Base/AMReX_RealVect.H:105:54: warning: array subscript 2 is above array bounds of ‘const Real [2]’ {aka ‘const double [2]’} [-Warray-bounds] 2023-10-03T22:45:21.5115907Z 105 | { AMREX_ASSERT(i>=0 && i < SpaceDim); return vect[i]; } 2023-10-03T22:45:21.5116250Z | ~~~~~~^ 2023-10-03T22:45:21.5116955Z /home/runner/work/pyamrex/pyamrex/build/_deps/fetchedamrex-src/Src/Base/AMReX_RealVect.H:643:8: note: while referencing ‘amrex::RealVect::vect’ 2023-10-03T22:45:21.5117463Z 643 | Real vect[SpaceDim] = {AMREX_D_DECL(Real(0.),Real(0.),Real(0.))}; 2023-10-03T22:45:21.5117782Z | ^~~~ 2023-10-03T22:45:21.5118510Z /home/runner/work/pyamrex/pyamrex/build/_deps/fetchedamrex-src/Src/Base/AMReX_RealVect.H:105:54: warning: array subscript 3 is above array bounds of ‘const Real [2]’ {aka ‘const double [2]’} [-Warray-bounds] 2023-10-03T22:45:21.5119100Z 105 | { AMREX_ASSERT(i>=0 && i < SpaceDim); return vect[i]; } 2023-10-03T22:45:21.5119434Z | ~~~~~~^ 2023-10-03T22:45:21.5120107Z /home/runner/work/pyamrex/pyamrex/build/_deps/fetchedamrex-src/Src/Base/AMReX_RealVect.H:643:8: note: while referencing ‘amrex::RealVect::vect’ 2023-10-03T22:45:21.5120621Z 643 | Real vect[SpaceDim] = {AMREX_D_DECL(Real(0.),Real(0.),Real(0.))}; 2023-10-03T22:45:21.5120913Z | ^~~~ 2023-10-03T22:45:21.5122752Z /home/runner/work/pyamrex/pyamrex/build/_deps/fetchedamrex-src/Src/Base/AMReX_RealVect.H: In static member function ‘static pybind11::handle pybind11::cpp_function::initialize(pybind11::module&)::, void, amrex::Particle<3, 2>&, const amrex::RealVect&, pybind11::name, pybind11::is_method, pybind11::sibling>(make_Particle<3, 2>(pybind11::module&)::&&, void (*)(amrex::Particle<3, 2>&, const amrex::RealVect&), const pybind11::name&, const pybind11::is_method&, const pybind11::sibling&)::::_FUN(pybind11::detail::function_call&)’: 2023-10-03T22:45:21.5124375Z /home/runner/work/pyamrex/pyamrex/build/_deps/fetchedamrex-src/Src/Base/AMReX_RealVect.H:105:54: warning: array subscript 2 is above array bounds of ‘const Real [2]’ {aka ‘const double [2]’} [-Warray-bounds] 2023-10-03T22:45:21.5124951Z 105 | { AMREX_ASSERT(i>=0 && i < SpaceDim); return vect[i]; } 2023-10-03T22:45:21.5125592Z | ~~~~~~^ 2023-10-03T22:45:21.5126283Z /home/runner/work/pyamrex/pyamrex/build/_deps/fetchedamrex-src/Src/Base/AMReX_RealVect.H:643:8: note: while referencing ‘amrex::RealVect::vect’ 2023-10-03T22:45:21.5126949Z 643 | Real vect[SpaceDim] = {AMREX_D_DECL(Real(0.),Real(0.),Real(0.))}; 2023-10-03T22:45:21.5127255Z | ^~~~ 2023-10-03T22:45:21.5163902Z [ 89%] Building CXX object CMakeFiles/pyAMReX_2d.dir/src/Particle/StructOfArrays.cpp.o 2023-10-03T22:45:21.5270426Z [ 89%] Building CXX object CMakeFiles/pyAMReX_2d.dir/src/Particle/ArrayOfStructs.cpp.o 2023-10-03T22:45:21.5374145Z [ 90%] Building CXX object CMakeFiles/pyAMReX_2d.dir/src/Particle/ParticleTile.cpp.o 2023-10-03T22:45:21.5496596Z [ 90%] Building CXX object CMakeFiles/pyAMReX_2d.dir/src/Particle/ParticleContainer.cpp.o 2023-10-03T22:45:21.5631973Z [ 90%] Building CXX object CMakeFiles/pyAMReX_2d.dir/src/Particle/ParticleContainer_HiPACE.cpp.o 2023-10-03T22:45:21.5721872Z [ 90%] Building CXX object CMakeFiles/pyAMReX_2d.dir/src/Particle/ParticleContainer_ImpactX.cpp.o 2023-10-03T22:45:21.5875938Z [ 90%] Building CXX object CMakeFiles/pyAMReX_2d.dir/src/Particle/ParticleContainer_WarpX.cpp.o 2023-10-03T22:45:21.6011384Z [ 91%] Linking CXX shared module lib/site-packages/amrex/space2d/amrex_2d_pybind.cpython-39-x86_64-linux-gnu.so 2023-10-03T22:45:22.0594081Z [ 91%] Built target pyAMReX_1d 2023-10-03T22:45:22.0719466Z [ 91%] Building CXX object CMakeFiles/pyAMReX_3d.dir/src/pyAMReX.cpp.o 2023-10-03T22:45:22.0789384Z [ 91%] Building CXX object CMakeFiles/pyAMReX_3d.dir/src/AmrCore/AmrMesh.cpp.o 2023-10-03T22:45:22.0886958Z [ 91%] Building CXX object CMakeFiles/pyAMReX_3d.dir/src/Base/AMReX.cpp.o 2023-10-03T22:45:22.0972036Z [ 91%] Building CXX object CMakeFiles/pyAMReX_3d.dir/src/Base/Arena.cpp.o 2023-10-03T22:45:22.1053695Z [ 92%] Building CXX object CMakeFiles/pyAMReX_3d.dir/src/Base/Array4.cpp.o 2023-10-03T22:45:23.3365167Z [ 92%] Built target pyAMReX_2d 2023-10-03T22:45:23.3394188Z [ 92%] Building CXX object CMakeFiles/pyAMReX_3d.dir/src/Base/Array4_complex.cpp.o 2023-10-03T22:45:28.0609139Z [ 92%] Building CXX object CMakeFiles/pyAMReX_3d.dir/src/Base/Array4_complex_const.cpp.o 2023-10-03T22:45:33.0426871Z [ 92%] Building CXX object CMakeFiles/pyAMReX_3d.dir/src/Base/Array4_float.cpp.o 2023-10-03T22:45:37.5606290Z [ 92%] Building CXX object CMakeFiles/pyAMReX_3d.dir/src/Base/Array4_float_const.cpp.o 2023-10-03T22:45:43.9409881Z [ 93%] Building CXX object CMakeFiles/pyAMReX_3d.dir/src/Base/Array4_int.cpp.o 2023-10-03T22:45:47.8435051Z [ 93%] Building CXX object CMakeFiles/pyAMReX_3d.dir/src/Base/Array4_int_const.cpp.o 2023-10-03T22:45:55.9129823Z [ 93%] Building CXX object CMakeFiles/pyAMReX_3d.dir/src/Base/Array4_uint.cpp.o 2023-10-03T22:45:59.0939072Z [ 93%] Building CXX object CMakeFiles/pyAMReX_3d.dir/src/Base/Array4_uint_const.cpp.o 2023-10-03T22:46:07.9235937Z [ 93%] Building CXX object CMakeFiles/pyAMReX_3d.dir/src/Base/BaseFab.cpp.o 2023-10-03T22:46:10.3505242Z [ 94%] Building CXX object CMakeFiles/pyAMReX_3d.dir/src/Base/Box.cpp.o 2023-10-03T22:46:10.3598922Z [ 94%] Building CXX object CMakeFiles/pyAMReX_3d.dir/src/Base/RealBox.cpp.o 2023-10-03T22:46:10.3688825Z [ 94%] Building CXX object CMakeFiles/pyAMReX_3d.dir/src/Base/BoxArray.cpp.o 2023-10-03T22:46:10.3781066Z [ 94%] Building CXX object CMakeFiles/pyAMReX_3d.dir/src/Base/CoordSys.cpp.o 2023-10-03T22:46:10.3868849Z [ 95%] Building CXX object CMakeFiles/pyAMReX_3d.dir/src/Base/Dim3.cpp.o 2023-10-03T22:46:10.3953167Z [ 95%] Building CXX object CMakeFiles/pyAMReX_3d.dir/src/Base/DistributionMapping.cpp.o 2023-10-03T22:46:10.4043981Z [ 95%] Building CXX object CMakeFiles/pyAMReX_3d.dir/src/Base/FArrayBox.cpp.o 2023-10-03T22:46:10.4131962Z [ 95%] Building CXX object CMakeFiles/pyAMReX_3d.dir/src/Base/Geometry.cpp.o 2023-10-03T22:46:10.4229536Z [ 95%] Building CXX object CMakeFiles/pyAMReX_3d.dir/src/Base/IndexType.cpp.o 2023-10-03T22:46:10.4316669Z [ 96%] Building CXX object CMakeFiles/pyAMReX_3d.dir/src/Base/IntVect.cpp.o 2023-10-03T22:46:10.4407536Z [ 96%] Building CXX object CMakeFiles/pyAMReX_3d.dir/src/Base/RealVect.cpp.o 2023-10-03T22:46:10.4495108Z [ 96%] Building CXX object CMakeFiles/pyAMReX_3d.dir/src/Base/MultiFab.cpp.o 2023-10-03T22:46:16.7474997Z [ 96%] Building CXX object CMakeFiles/pyAMReX_3d.dir/src/Base/ParallelDescriptor.cpp.o 2023-10-03T22:46:16.7563598Z [ 96%] Building CXX object CMakeFiles/pyAMReX_3d.dir/src/Base/ParmParse.cpp.o 2023-10-03T22:46:16.7652574Z [ 97%] Building CXX object CMakeFiles/pyAMReX_3d.dir/src/Base/Periodicity.cpp.o 2023-10-03T22:46:16.7736864Z [ 97%] Building CXX object CMakeFiles/pyAMReX_3d.dir/src/Base/PlotFileUtil.cpp.o 2023-10-03T22:46:16.7825371Z [ 97%] Building CXX object CMakeFiles/pyAMReX_3d.dir/src/Base/PODVector.cpp.o 2023-10-03T22:46:27.6758171Z [ 97%] Building CXX object CMakeFiles/pyAMReX_3d.dir/src/Base/Utility.cpp.o 2023-10-03T22:46:27.6850371Z [ 97%] Building CXX object CMakeFiles/pyAMReX_3d.dir/src/Base/Vector.cpp.o 2023-10-03T22:46:27.7040120Z [ 98%] Building CXX object CMakeFiles/pyAMReX_3d.dir/src/Base/Version.cpp.o 2023-10-03T22:46:27.7144314Z [ 98%] Building CXX object CMakeFiles/pyAMReX_3d.dir/src/Particle/Particle.cpp.o 2023-10-03T22:46:27.7230653Z In file included from /home/runner/work/pyamrex/pyamrex/src/Particle/Particle.cpp:11: 2023-10-03T22:46:27.7233382Z /home/runner/work/pyamrex/pyamrex/build/_deps/fetchedamrex-src/Src/Base/AMReX_RealVect.H: In static member function ‘static pybind11::handle pybind11::cpp_function::initialize(pybind11::module&)::, void, amrex::Particle<4, 0>&, const amrex::RealVect&, pybind11::name, pybind11::is_method, pybind11::sibling>(make_Particle<4, 0>(pybind11::module&)::&&, void (*)(amrex::Particle<4, 0>&, const amrex::RealVect&), const pybind11::name&, const pybind11::is_method&, const pybind11::sibling&)::::_FUN(pybind11::detail::function_call&)’: 2023-10-03T22:46:27.7235321Z /home/runner/work/pyamrex/pyamrex/build/_deps/fetchedamrex-src/Src/Base/AMReX_RealVect.H:105:54: warning: array subscript 3 is above array bounds of ‘const Real [3]’ {aka ‘const double [3]’} [-Warray-bounds] 2023-10-03T22:46:27.7236076Z 105 | { AMREX_ASSERT(i>=0 && i < SpaceDim); return vect[i]; } 2023-10-03T22:46:27.7236593Z | ~~~~~~^ 2023-10-03T22:46:27.7238163Z /home/runner/work/pyamrex/pyamrex/build/_deps/fetchedamrex-src/Src/Base/AMReX_RealVect.H:643:8: note: while referencing ‘amrex::RealVect::vect’ 2023-10-03T22:46:27.7238743Z 643 | Real vect[SpaceDim] = {AMREX_D_DECL(Real(0.),Real(0.),Real(0.))}; 2023-10-03T22:46:27.7239056Z | ^~~~ 2023-10-03T22:46:27.7292722Z [ 98%] Building CXX object CMakeFiles/pyAMReX_3d.dir/src/Particle/StructOfArrays.cpp.o 2023-10-03T22:46:27.7406926Z [ 98%] Building CXX object CMakeFiles/pyAMReX_3d.dir/src/Particle/ArrayOfStructs.cpp.o 2023-10-03T22:46:27.7522133Z [ 98%] Building CXX object CMakeFiles/pyAMReX_3d.dir/src/Particle/ParticleTile.cpp.o 2023-10-03T22:46:27.7660369Z [ 99%] Building CXX object CMakeFiles/pyAMReX_3d.dir/src/Particle/ParticleContainer.cpp.o 2023-10-03T22:46:27.7797040Z [ 99%] Building CXX object CMakeFiles/pyAMReX_3d.dir/src/Particle/ParticleContainer_HiPACE.cpp.o 2023-10-03T22:46:27.7896628Z [ 99%] Building CXX object CMakeFiles/pyAMReX_3d.dir/src/Particle/ParticleContainer_ImpactX.cpp.o 2023-10-03T22:46:27.8068936Z [ 99%] Building CXX object CMakeFiles/pyAMReX_3d.dir/src/Particle/ParticleContainer_WarpX.cpp.o 2023-10-03T22:46:29.0886353Z [100%] Linking CXX shared module lib/site-packages/amrex/space3d/amrex_3d_pybind.cpython-39-x86_64-linux-gnu.so 2023-10-03T22:46:30.6939454Z [100%] Built target pyAMReX_3d 2023-10-03T22:46:31.1861968Z Processing /home/runner/work/pyamrex/pyamrex 2023-10-03T22:46:31.1892280Z Preparing metadata (pyproject.toml): started 2023-10-03T22:46:31.1894673Z Running command Preparing metadata (pyproject.toml) 2023-10-03T22:46:31.3284324Z /opt/hostedtoolcache/Python/3.9.18/x64/lib/python3.9/site-packages/setuptools/dist.py:314: InformationOnly: Normalizing '23.09' to '23.9' 2023-10-03T22:46:31.3291881Z self.metadata.version = self._normalize_version( 2023-10-03T22:46:31.3339380Z running dist_info 2023-10-03T22:46:31.3393603Z creating /tmp/pip-modern-metadata-7gu86lgl/amrex.egg-info 2023-10-03T22:46:31.3415136Z writing /tmp/pip-modern-metadata-7gu86lgl/amrex.egg-info/PKG-INFO 2023-10-03T22:46:31.3421546Z writing dependency_links to /tmp/pip-modern-metadata-7gu86lgl/amrex.egg-info/dependency_links.txt 2023-10-03T22:46:31.3427677Z writing requirements to /tmp/pip-modern-metadata-7gu86lgl/amrex.egg-info/requires.txt 2023-10-03T22:46:31.3433115Z writing top-level names to /tmp/pip-modern-metadata-7gu86lgl/amrex.egg-info/top_level.txt 2023-10-03T22:46:31.3438479Z writing manifest file '/tmp/pip-modern-metadata-7gu86lgl/amrex.egg-info/SOURCES.txt' 2023-10-03T22:46:31.3497199Z reading manifest file '/tmp/pip-modern-metadata-7gu86lgl/amrex.egg-info/SOURCES.txt' 2023-10-03T22:46:31.3503236Z reading manifest template 'MANIFEST.in' 2023-10-03T22:46:31.4794889Z warning: no previously-included files matching '*/__pycache__/*' found anywhere in distribution 2023-10-03T22:46:31.4802113Z warning: no previously-included files matching '*.pyc' found anywhere in distribution 2023-10-03T22:46:31.4807728Z no previously-included directories found matching 'cmake-build*' 2023-10-03T22:46:31.4813407Z no previously-included directories found matching '.spack-env*' 2023-10-03T22:46:31.4824550Z adding license file 'LICENSE' 2023-10-03T22:46:31.4852661Z writing manifest file '/tmp/pip-modern-metadata-7gu86lgl/amrex.egg-info/SOURCES.txt' 2023-10-03T22:46:31.4858734Z creating '/tmp/pip-modern-metadata-7gu86lgl/amrex-23.9.dist-info' 2023-10-03T22:46:31.5298616Z Preparing metadata (pyproject.toml): finished with status 'done' 2023-10-03T22:46:31.5364116Z Building wheels for collected packages: amrex 2023-10-03T22:46:31.5376470Z Building wheel for amrex (pyproject.toml): started 2023-10-03T22:46:31.5379757Z Running command Building wheel for amrex (pyproject.toml) 2023-10-03T22:46:31.6759076Z /opt/hostedtoolcache/Python/3.9.18/x64/lib/python3.9/site-packages/setuptools/dist.py:314: InformationOnly: Normalizing '23.09' to '23.9' 2023-10-03T22:46:31.6761691Z self.metadata.version = self._normalize_version( 2023-10-03T22:46:31.6966789Z running bdist_wheel 2023-10-03T22:46:31.7083067Z running build 2023-10-03T22:46:31.7088978Z '_tmppythonbuild/lib' does not exist -- can't clean it 2023-10-03T22:46:31.7094450Z '_tmppythonbuild/bdist.linux-x86_64' does not exist -- can't clean it 2023-10-03T22:46:31.7099679Z '_tmppythonbuild/scripts-3.9' does not exist -- can't clean it 2023-10-03T22:46:31.7104608Z running build_py 2023-10-03T22:46:31.7115844Z creating _tmppythonbuild 2023-10-03T22:46:31.7120807Z creating _tmppythonbuild/lib 2023-10-03T22:46:31.7125689Z creating _tmppythonbuild/lib/amrex 2023-10-03T22:46:31.7131298Z copying src/amrex/StructOfArrays.py -> _tmppythonbuild/lib/amrex 2023-10-03T22:46:31.7137196Z copying src/amrex/Array4.py -> _tmppythonbuild/lib/amrex 2023-10-03T22:46:31.7142449Z copying src/amrex/__init__.py -> _tmppythonbuild/lib/amrex 2023-10-03T22:46:31.7147815Z copying src/amrex/MultiFab.py -> _tmppythonbuild/lib/amrex 2023-10-03T22:46:31.7152862Z copying src/amrex/PODVector.py -> _tmppythonbuild/lib/amrex 2023-10-03T22:46:31.7158072Z copying src/amrex/ArrayOfStructs.py -> _tmppythonbuild/lib/amrex 2023-10-03T22:46:31.7427919Z installing to _tmppythonbuild/bdist.linux-x86_64/wheel 2023-10-03T22:46:31.7434227Z running install 2023-10-03T22:46:31.7512105Z running install_lib 2023-10-03T22:46:31.7537748Z creating _tmppythonbuild/bdist.linux-x86_64 2023-10-03T22:46:31.7543216Z creating _tmppythonbuild/bdist.linux-x86_64/wheel 2023-10-03T22:46:31.7548425Z creating _tmppythonbuild/bdist.linux-x86_64/wheel/amrex 2023-10-03T22:46:31.7554283Z copying _tmppythonbuild/lib/amrex/StructOfArrays.py -> _tmppythonbuild/bdist.linux-x86_64/wheel/amrex 2023-10-03T22:46:31.7559924Z copying _tmppythonbuild/lib/amrex/Array4.py -> _tmppythonbuild/bdist.linux-x86_64/wheel/amrex 2023-10-03T22:46:31.7565587Z creating _tmppythonbuild/bdist.linux-x86_64/wheel/amrex/space3d 2023-10-03T22:46:31.7571227Z copying _tmppythonbuild/lib/amrex/space3d/__init__.py -> _tmppythonbuild/bdist.linux-x86_64/wheel/amrex/space3d 2023-10-03T22:46:31.7576631Z creating _tmppythonbuild/bdist.linux-x86_64/wheel/amrex/space3d/amrex_3d_pybind 2023-10-03T22:46:31.7582174Z copying _tmppythonbuild/lib/amrex/space3d/amrex_3d_pybind/ParallelDescriptor.pyi -> _tmppythonbuild/bdist.linux-x86_64/wheel/amrex/space3d/amrex_3d_pybind 2023-10-03T22:46:31.7587822Z copying _tmppythonbuild/lib/amrex/space3d/amrex_3d_pybind/__init__.pyi -> _tmppythonbuild/bdist.linux-x86_64/wheel/amrex/space3d/amrex_3d_pybind 2023-10-03T22:46:31.7593687Z copying _tmppythonbuild/lib/amrex/space3d/__init__.pyi -> _tmppythonbuild/bdist.linux-x86_64/wheel/amrex/space3d 2023-10-03T22:46:31.7599281Z copying _tmppythonbuild/lib/amrex/space3d/amrex_3d_pybind.cpython-39-x86_64-linux-gnu.so -> _tmppythonbuild/bdist.linux-x86_64/wheel/amrex/space3d 2023-10-03T22:46:31.7651026Z copying _tmppythonbuild/lib/amrex/__init__.py -> _tmppythonbuild/bdist.linux-x86_64/wheel/amrex 2023-10-03T22:46:31.7656763Z creating _tmppythonbuild/bdist.linux-x86_64/wheel/amrex/space2d 2023-10-03T22:46:31.7662517Z copying _tmppythonbuild/lib/amrex/space2d/amrex_2d_pybind.cpython-39-x86_64-linux-gnu.so -> _tmppythonbuild/bdist.linux-x86_64/wheel/amrex/space2d 2023-10-03T22:46:31.7746473Z copying _tmppythonbuild/lib/amrex/space2d/__init__.py -> _tmppythonbuild/bdist.linux-x86_64/wheel/amrex/space2d 2023-10-03T22:46:31.7752539Z creating _tmppythonbuild/bdist.linux-x86_64/wheel/amrex/space2d/amrex_2d_pybind 2023-10-03T22:46:31.7758222Z copying _tmppythonbuild/lib/amrex/space2d/amrex_2d_pybind/ParallelDescriptor.pyi -> _tmppythonbuild/bdist.linux-x86_64/wheel/amrex/space2d/amrex_2d_pybind 2023-10-03T22:46:31.7764036Z copying _tmppythonbuild/lib/amrex/space2d/amrex_2d_pybind/__init__.pyi -> _tmppythonbuild/bdist.linux-x86_64/wheel/amrex/space2d/amrex_2d_pybind 2023-10-03T22:46:31.7769769Z copying _tmppythonbuild/lib/amrex/space2d/__init__.pyi -> _tmppythonbuild/bdist.linux-x86_64/wheel/amrex/space2d 2023-10-03T22:46:31.7775421Z copying _tmppythonbuild/lib/amrex/MultiFab.py -> _tmppythonbuild/bdist.linux-x86_64/wheel/amrex 2023-10-03T22:46:31.7780830Z creating _tmppythonbuild/bdist.linux-x86_64/wheel/amrex/space1d 2023-10-03T22:46:31.7797462Z copying _tmppythonbuild/lib/amrex/space1d/__init__.py -> _tmppythonbuild/bdist.linux-x86_64/wheel/amrex/space1d 2023-10-03T22:46:31.7804964Z creating _tmppythonbuild/bdist.linux-x86_64/wheel/amrex/space1d/amrex_1d_pybind 2023-10-03T22:46:31.7817209Z copying _tmppythonbuild/lib/amrex/space1d/amrex_1d_pybind/ParallelDescriptor.pyi -> _tmppythonbuild/bdist.linux-x86_64/wheel/amrex/space1d/amrex_1d_pybind 2023-10-03T22:46:31.7823228Z copying _tmppythonbuild/lib/amrex/space1d/amrex_1d_pybind/__init__.pyi -> _tmppythonbuild/bdist.linux-x86_64/wheel/amrex/space1d/amrex_1d_pybind 2023-10-03T22:46:31.7934397Z copying _tmppythonbuild/lib/amrex/space1d/__init__.pyi -> _tmppythonbuild/bdist.linux-x86_64/wheel/amrex/space1d 2023-10-03T22:46:31.7974716Z copying _tmppythonbuild/lib/amrex/space1d/amrex_1d_pybind.cpython-39-x86_64-linux-gnu.so -> _tmppythonbuild/bdist.linux-x86_64/wheel/amrex/space1d 2023-10-03T22:46:31.7980564Z copying _tmppythonbuild/lib/amrex/PODVector.py -> _tmppythonbuild/bdist.linux-x86_64/wheel/amrex 2023-10-03T22:46:31.7986114Z copying _tmppythonbuild/lib/amrex/ArrayOfStructs.py -> _tmppythonbuild/bdist.linux-x86_64/wheel/amrex 2023-10-03T22:46:31.8052346Z running install_egg_info 2023-10-03T22:46:31.8057325Z running egg_info 2023-10-03T22:46:31.8062493Z creating src/amrex.egg-info 2023-10-03T22:46:31.8067666Z writing src/amrex.egg-info/PKG-INFO 2023-10-03T22:46:31.8072807Z writing dependency_links to src/amrex.egg-info/dependency_links.txt 2023-10-03T22:46:31.8078289Z writing requirements to src/amrex.egg-info/requires.txt 2023-10-03T22:46:31.8083691Z writing top-level names to src/amrex.egg-info/top_level.txt 2023-10-03T22:46:31.8134446Z writing manifest file 'src/amrex.egg-info/SOURCES.txt' 2023-10-03T22:46:31.8139722Z reading manifest file 'src/amrex.egg-info/SOURCES.txt' 2023-10-03T22:46:31.8144964Z reading manifest template 'MANIFEST.in' 2023-10-03T22:46:31.9295309Z warning: no previously-included files matching '*/__pycache__/*' found anywhere in distribution 2023-10-03T22:46:31.9297146Z warning: no previously-included files matching '*.pyc' found anywhere in distribution 2023-10-03T22:46:31.9313923Z no previously-included directories found matching 'cmake-build*' 2023-10-03T22:46:31.9314567Z no previously-included directories found matching '.spack-env*' 2023-10-03T22:46:31.9315061Z adding license file 'LICENSE' 2023-10-03T22:46:31.9354009Z writing manifest file 'src/amrex.egg-info/SOURCES.txt' 2023-10-03T22:46:31.9360300Z Copying src/amrex.egg-info to _tmppythonbuild/bdist.linux-x86_64/wheel/amrex-23.9-py3.9.egg-info 2023-10-03T22:46:31.9366129Z running install_scripts 2023-10-03T22:46:31.9389776Z creating _tmppythonbuild/bdist.linux-x86_64/wheel/amrex-23.9.dist-info/WHEEL 2023-10-03T22:46:31.9396022Z creating '/tmp/pip-wheel-elfrttbz/.tmp-8rlnu64_/amrex-23.9-py3-none-any.whl' and adding '_tmppythonbuild/bdist.linux-x86_64/wheel' to it 2023-10-03T22:46:31.9401760Z adding 'amrex/Array4.py' 2023-10-03T22:46:31.9406937Z adding 'amrex/ArrayOfStructs.py' 2023-10-03T22:46:31.9413763Z adding 'amrex/MultiFab.py' 2023-10-03T22:46:31.9418935Z adding 'amrex/PODVector.py' 2023-10-03T22:46:31.9424093Z adding 'amrex/StructOfArrays.py' 2023-10-03T22:46:31.9429020Z adding 'amrex/__init__.py' 2023-10-03T22:46:31.9434172Z adding 'amrex/space1d/__init__.py' 2023-10-03T22:46:31.9440139Z adding 'amrex/space1d/__init__.pyi' 2023-10-03T22:46:32.3799403Z adding 'amrex/space1d/amrex_1d_pybind.cpython-39-x86_64-linux-gnu.so' 2023-10-03T22:46:32.4022084Z adding 'amrex/space1d/amrex_1d_pybind/ParallelDescriptor.pyi' 2023-10-03T22:46:32.4081211Z adding 'amrex/space1d/amrex_1d_pybind/__init__.pyi' 2023-10-03T22:46:32.4096311Z adding 'amrex/space2d/__init__.py' 2023-10-03T22:46:32.4101963Z adding 'amrex/space2d/__init__.pyi' 2023-10-03T22:46:32.8576922Z adding 'amrex/space2d/amrex_2d_pybind.cpython-39-x86_64-linux-gnu.so' 2023-10-03T22:46:32.8806032Z adding 'amrex/space2d/amrex_2d_pybind/ParallelDescriptor.pyi' 2023-10-03T22:46:32.8863301Z adding 'amrex/space2d/amrex_2d_pybind/__init__.pyi' 2023-10-03T22:46:32.8878309Z adding 'amrex/space3d/__init__.py' 2023-10-03T22:46:32.8884055Z adding 'amrex/space3d/__init__.pyi' 2023-10-03T22:46:33.3465759Z adding 'amrex/space3d/amrex_3d_pybind.cpython-39-x86_64-linux-gnu.so' 2023-10-03T22:46:33.3699130Z adding 'amrex/space3d/amrex_3d_pybind/ParallelDescriptor.pyi' 2023-10-03T22:46:33.3756482Z adding 'amrex/space3d/amrex_3d_pybind/__init__.pyi' 2023-10-03T22:46:33.3773028Z adding 'amrex-23.9.dist-info/LICENSE' 2023-10-03T22:46:33.3778110Z adding 'amrex-23.9.dist-info/METADATA' 2023-10-03T22:46:33.3782002Z adding 'amrex-23.9.dist-info/WHEEL' 2023-10-03T22:46:33.3786851Z adding 'amrex-23.9.dist-info/top_level.txt' 2023-10-03T22:46:33.3791992Z adding 'amrex-23.9.dist-info/RECORD' 2023-10-03T22:46:33.3797066Z removing _tmppythonbuild/bdist.linux-x86_64/wheel 2023-10-03T22:46:33.4070698Z Building wheel for amrex (pyproject.toml): finished with status 'done' 2023-10-03T22:46:33.4353248Z Created wheel for amrex: filename=amrex-23.9-py3-none-any.whl size=8808852 sha256=bafe1597c55b167e79c4fb1ef965784d74f614122cd25a0e43ff40902873bcca 2023-10-03T22:46:33.4354523Z Stored in directory: /tmp/pip-ephem-wheel-cache-p8jgrblh/wheels/b5/5d/17/e03489273e68981695da2b92b260150366c9c95e86a8c47475 2023-10-03T22:46:33.4391056Z Successfully built amrex 2023-10-03T22:46:33.5724894Z [100%] Built target pip_wheel 2023-10-03T22:46:34.0658431Z Looking in links: amrex-whl 2023-10-03T22:46:34.0823185Z Processing ./amrex-whl/amrex-23.9-py3-none-any.whl 2023-10-03T22:46:34.1124108Z Installing collected packages: amrex 2023-10-03T22:46:34.2950034Z Successfully installed amrex-23.9 2023-10-03T22:46:34.3633795Z [100%] Built target pip_install 2023-10-03T22:46:34.3733328Z Cacheable calls: 472 / 472 (100.0%) 2023-10-03T22:46:34.3733847Z Hits: 433 / 472 (91.74%) 2023-10-03T22:46:34.3734203Z Direct: 433 / 433 (100.0%) 2023-10-03T22:46:34.3734569Z Preprocessed: 0 / 433 ( 0.00%) 2023-10-03T22:46:34.3735271Z Misses: 39 / 472 ( 8.26%) 2023-10-03T22:46:34.3735593Z Local storage: 2023-10-03T22:46:34.3735862Z Cache size (GB): 0.1 / 0.2 (25.28%) 2023-10-03T22:46:34.3736134Z Hits: 433 / 472 (91.74%) 2023-10-03T22:46:34.3736399Z Misses: 39 / 472 ( 8.26%) 2023-10-03T22:46:34.3825389Z 51M /home/runner/.cache/ccache 2023-10-03T22:46:34.3853593Z ##[group]Run .github/update_stub.sh 2023-10-03T22:46:34.3853914Z .github/update_stub.sh 2023-10-03T22:46:34.3911466Z shell: /usr/bin/bash -e {0} 2023-10-03T22:46:34.3911717Z env: 2023-10-03T22:46:34.3911946Z CC: gcc 2023-10-03T22:46:34.3912155Z CXX: g++ 2023-10-03T22:46:34.3912372Z CXXFLAGS: -O1 2023-10-03T22:46:34.3912592Z OMP_NUM_THREAD: 2 2023-10-03T22:46:34.3912912Z pythonLocation: /opt/hostedtoolcache/Python/3.9.18/x64 2023-10-03T22:46:34.3913309Z PKG_CONFIG_PATH: /opt/hostedtoolcache/Python/3.9.18/x64/lib/pkgconfig 2023-10-03T22:46:34.3913694Z Python_ROOT_DIR: /opt/hostedtoolcache/Python/3.9.18/x64 2023-10-03T22:46:34.3914054Z Python2_ROOT_DIR: /opt/hostedtoolcache/Python/3.9.18/x64 2023-10-03T22:46:34.3914412Z Python3_ROOT_DIR: /opt/hostedtoolcache/Python/3.9.18/x64 2023-10-03T22:46:34.3914759Z LD_LIBRARY_PATH: /opt/hostedtoolcache/Python/3.9.18/x64/lib 2023-10-03T22:46:34.3915059Z ##[endgroup] 2023-10-03T22:46:37.5952221Z ##[group]Run git add . 2023-10-03T22:46:37.5952534Z git add . 2023-10-03T22:46:37.5952834Z pre-commit run -a || true 2023-10-03T22:46:37.5953132Z git add . 2023-10-03T22:46:37.6016652Z shell: /usr/bin/bash -e {0} 2023-10-03T22:46:37.6016953Z env: 2023-10-03T22:46:37.6017175Z CC: gcc 2023-10-03T22:46:37.6017409Z CXX: g++ 2023-10-03T22:46:37.6017653Z CXXFLAGS: -O1 2023-10-03T22:46:37.6017917Z OMP_NUM_THREAD: 2 2023-10-03T22:46:37.6018275Z pythonLocation: /opt/hostedtoolcache/Python/3.9.18/x64 2023-10-03T22:46:37.6018711Z PKG_CONFIG_PATH: /opt/hostedtoolcache/Python/3.9.18/x64/lib/pkgconfig 2023-10-03T22:46:37.6019146Z Python_ROOT_DIR: /opt/hostedtoolcache/Python/3.9.18/x64 2023-10-03T22:46:37.6019555Z Python2_ROOT_DIR: /opt/hostedtoolcache/Python/3.9.18/x64 2023-10-03T22:46:37.6019961Z Python3_ROOT_DIR: /opt/hostedtoolcache/Python/3.9.18/x64 2023-10-03T22:46:37.6020375Z LD_LIBRARY_PATH: /opt/hostedtoolcache/Python/3.9.18/x64/lib 2023-10-03T22:46:37.6020751Z ##[endgroup] 2023-10-03T22:46:37.8173761Z [INFO] Initializing environment for https://github.com/pre-commit/pre-commit-hooks. 2023-10-03T22:46:38.1030240Z [INFO] Initializing environment for https://github.com/pre-commit/pygrep-hooks. 2023-10-03T22:46:38.3451268Z [INFO] Initializing environment for https://github.com/Lucas-C/pre-commit-hooks. 2023-10-03T22:46:38.5847707Z [INFO] Initializing environment for https://github.com/hadialqattan/pycln. 2023-10-03T22:46:38.8336061Z [INFO] Initializing environment for https://github.com/pycqa/isort. 2023-10-03T22:46:39.1174698Z [INFO] Initializing environment for https://github.com/psf/black. 2023-10-03T22:46:39.4819349Z [INFO] Initializing environment for https://github.com/asottile/blacken-docs. 2023-10-03T22:46:39.7337123Z [INFO] Initializing environment for https://github.com/asottile/blacken-docs:black==23.9.1. 2023-10-03T22:46:39.9886004Z [INFO] Initializing environment for https://github.com/roy-ht/pre-commit-jupyter. 2023-10-03T22:46:40.2149607Z [INFO] Initializing environment for https://github.com/mgedmin/check-manifest. 2023-10-03T22:46:40.4455261Z [INFO] Initializing environment for https://github.com/mgedmin/check-manifest:cmake,ninja. 2023-10-03T22:46:40.6602624Z [INFO] Installing environment for https://github.com/pre-commit/pre-commit-hooks. 2023-10-03T22:46:40.6603759Z [INFO] Once installed this environment will be reused. 2023-10-03T22:46:40.6604330Z [INFO] This may take a few minutes... 2023-10-03T22:46:46.6248555Z [INFO] Installing environment for https://github.com/Lucas-C/pre-commit-hooks. 2023-10-03T22:46:46.6249453Z [INFO] Once installed this environment will be reused. 2023-10-03T22:46:46.6250317Z [INFO] This may take a few minutes... 2023-10-03T22:46:50.8235620Z [INFO] Installing environment for https://github.com/hadialqattan/pycln. 2023-10-03T22:46:50.8236486Z [INFO] Once installed this environment will be reused. 2023-10-03T22:46:50.8237327Z [INFO] This may take a few minutes... 2023-10-03T22:46:56.2001219Z [INFO] Installing environment for https://github.com/pycqa/isort. 2023-10-03T22:46:56.2002131Z [INFO] Once installed this environment will be reused. 2023-10-03T22:46:56.2003104Z [INFO] This may take a few minutes... 2023-10-03T22:46:59.7186909Z [INFO] Installing environment for https://github.com/psf/black. 2023-10-03T22:46:59.7187507Z [INFO] Once installed this environment will be reused. 2023-10-03T22:46:59.7189285Z [INFO] This may take a few minutes... 2023-10-03T22:47:05.1178003Z [INFO] Installing environment for https://github.com/asottile/blacken-docs. 2023-10-03T22:47:05.1178699Z [INFO] Once installed this environment will be reused. 2023-10-03T22:47:05.1179124Z [INFO] This may take a few minutes... 2023-10-03T22:47:10.8643987Z [INFO] Installing environment for https://github.com/roy-ht/pre-commit-jupyter. 2023-10-03T22:47:10.8644844Z [INFO] Once installed this environment will be reused. 2023-10-03T22:47:10.8645777Z [INFO] This may take a few minutes... 2023-10-03T22:47:13.2366171Z trim trailing whitespace.................................................Failed 2023-10-03T22:47:13.2367283Z - hook id: trailing-whitespace 2023-10-03T22:47:13.2367853Z - exit code: 1 2023-10-03T22:47:13.2372187Z - files were modified by this hook 2023-10-03T22:47:13.2372571Z 2023-10-03T22:47:13.2430825Z Fixing src/amrex/space1d/amrex_1d_pybind/__init__.pyi 2023-10-03T22:47:13.2431219Z Fixing src/amrex/space2d/amrex_2d_pybind/__init__.pyi 2023-10-03T22:47:13.2431546Z Fixing src/amrex/space2d/__init__.pyi 2023-10-03T22:47:13.2431846Z Fixing src/amrex/space3d/__init__.pyi 2023-10-03T22:47:13.2432171Z Fixing src/amrex/space3d/amrex_3d_pybind/__init__.pyi 2023-10-03T22:47:13.2432494Z Fixing src/amrex/space1d/__init__.pyi 2023-10-03T22:47:13.2432671Z 2023-10-03T22:47:13.3077591Z fix end of files.........................................................Passed 2023-10-03T22:47:13.3954674Z mixed line ending........................................................Passed 2023-10-03T22:47:13.4591200Z check json...............................................................Passed 2023-10-03T22:47:13.5295817Z check toml...............................................................Passed 2023-10-03T22:47:13.6377037Z check yaml...............................................................Passed 2023-10-03T22:47:13.7158330Z check for added large files..............................................Passed 2023-10-03T22:47:13.7777661Z fix requirements.txt.....................................................Passed 2023-10-03T22:47:13.8880327Z rst ``code`` is two backticks............................................Passed 2023-10-03T22:47:13.9979321Z rst directives end with two colons.......................................Passed 2023-10-03T22:47:14.1103101Z rst ``inline code`` next to normal text..................................Passed 2023-10-03T22:47:14.1765083Z Tabs remover.............................................................Passed 2023-10-03T22:47:14.6135747Z pycln (python)...........................................................Passed 2023-10-03T22:47:15.0169673Z isort (python)...........................................................Failed 2023-10-03T22:47:15.0170371Z - hook id: isort 2023-10-03T22:47:15.0170787Z - files were modified by this hook 2023-10-03T22:47:15.0171059Z 2023-10-03T22:47:15.0171489Z Fixing /home/runner/work/pyamrex/pyamrex/src/amrex/space1d/__init__.pyi 2023-10-03T22:47:15.0293727Z Fixing /home/runner/work/pyamrex/pyamrex/src/amrex/space1d/amrex_1d_pybind/ParallelDescriptor.pyi 2023-10-03T22:47:15.0294271Z Fixing /home/runner/work/pyamrex/pyamrex/src/amrex/space1d/amrex_1d_pybind/__init__.pyi 2023-10-03T22:47:15.0294703Z Fixing /home/runner/work/pyamrex/pyamrex/src/amrex/space2d/__init__.pyi 2023-10-03T22:47:15.0295175Z Fixing /home/runner/work/pyamrex/pyamrex/src/amrex/space2d/amrex_2d_pybind/ParallelDescriptor.pyi 2023-10-03T22:47:15.0295658Z Fixing /home/runner/work/pyamrex/pyamrex/src/amrex/space2d/amrex_2d_pybind/__init__.pyi 2023-10-03T22:47:15.0296109Z Fixing /home/runner/work/pyamrex/pyamrex/src/amrex/space3d/__init__.pyi 2023-10-03T22:47:15.0296574Z Fixing /home/runner/work/pyamrex/pyamrex/src/amrex/space3d/amrex_3d_pybind/ParallelDescriptor.pyi 2023-10-03T22:47:15.0297060Z Fixing /home/runner/work/pyamrex/pyamrex/src/amrex/space3d/amrex_3d_pybind/__init__.pyi 2023-10-03T22:47:15.0297316Z 2023-10-03T22:47:46.8576751Z black....................................................................Failed 2023-10-03T22:47:46.8577341Z - hook id: black 2023-10-03T22:47:46.8577664Z - files were modified by this hook 2023-10-03T22:47:46.8577847Z 2023-10-03T22:47:46.8578064Z reformatted src/amrex/space1d/amrex_1d_pybind/ParallelDescriptor.pyi 2023-10-03T22:47:46.8578452Z reformatted src/amrex/space1d/__init__.pyi 2023-10-03T22:47:46.8578770Z reformatted src/amrex/space2d/__init__.pyi 2023-10-03T22:47:46.8579156Z reformatted src/amrex/space2d/amrex_2d_pybind/ParallelDescriptor.pyi 2023-10-03T22:47:46.8579544Z reformatted src/amrex/space1d/amrex_1d_pybind/__init__.pyi 2023-10-03T22:47:46.8580237Z reformatted src/amrex/space3d/__init__.pyi 2023-10-03T22:47:46.8580622Z reformatted src/amrex/space3d/amrex_3d_pybind/ParallelDescriptor.pyi 2023-10-03T22:47:46.8581024Z reformatted src/amrex/space2d/amrex_2d_pybind/__init__.pyi 2023-10-03T22:47:46.8581388Z reformatted src/amrex/space3d/amrex_3d_pybind/__init__.pyi 2023-10-03T22:47:46.8581615Z 2023-10-03T22:47:46.8581821Z All done! ✨ 🍰 ✨ 2023-10-03T22:47:46.8582100Z 9 files reformatted, 33 files left unchanged. 2023-10-03T22:47:46.8582295Z 2023-10-03T22:47:47.0805303Z blacken-docs.............................................................Passed 2023-10-03T22:47:47.0806982Z jupyter-notebook-cleanup.............................(no files to check)Skipped 2023-10-03T22:47:47.1241149Z ##[group]Run cmake --build build -j 2 --target pip_install 2023-10-03T22:47:47.1241587Z cmake --build build -j 2 --target pip_install 2023-10-03T22:47:47.1299253Z shell: /usr/bin/bash -e {0} 2023-10-03T22:47:47.1299512Z env: 2023-10-03T22:47:47.1299719Z CC: gcc 2023-10-03T22:47:47.1299913Z CXX: g++ 2023-10-03T22:47:47.1300135Z CXXFLAGS: -O1 2023-10-03T22:47:47.1300369Z OMP_NUM_THREAD: 2 2023-10-03T22:47:47.1300688Z pythonLocation: /opt/hostedtoolcache/Python/3.9.18/x64 2023-10-03T22:47:47.1301084Z PKG_CONFIG_PATH: /opt/hostedtoolcache/Python/3.9.18/x64/lib/pkgconfig 2023-10-03T22:47:47.1301477Z Python_ROOT_DIR: /opt/hostedtoolcache/Python/3.9.18/x64 2023-10-03T22:47:47.1301836Z Python2_ROOT_DIR: /opt/hostedtoolcache/Python/3.9.18/x64 2023-10-03T22:47:47.1302192Z Python3_ROOT_DIR: /opt/hostedtoolcache/Python/3.9.18/x64 2023-10-03T22:47:47.1302553Z LD_LIBRARY_PATH: /opt/hostedtoolcache/Python/3.9.18/x64/lib 2023-10-03T22:47:47.1302848Z ##[endgroup] 2023-10-03T22:47:47.4530883Z [ 23%] Built target amrex_1d 2023-10-03T22:47:47.4617090Z [ 24%] Building CXX object CMakeFiles/buildInfopyAMReX_1d.dir/pyAMReX_1d/AMReX_buildInfo.cpp.o 2023-10-03T22:47:47.5274157Z [ 24%] Linking CXX static library lib/libbuildInfopyAMReX_1d.a 2023-10-03T22:47:47.6712786Z [ 24%] Built target buildInfopyAMReX_1d 2023-10-03T22:47:47.6823719Z Requirement already satisfied: numpy~=1.15 in /opt/hostedtoolcache/Python/3.9.18/x64/lib/python3.9/site-packages (from -r /home/runner/work/pyamrex/pyamrex/requirements.txt (line 1)) (1.26.0) 2023-10-03T22:47:47.9330976Z [ 24%] Built target pip_install_requirements 2023-10-03T22:47:47.9415411Z [ 24%] Building CXX object CMakeFiles/buildInfopyAMReX_2d.dir/pyAMReX_2d/AMReX_buildInfo.cpp.o 2023-10-03T22:47:47.9608521Z [ 48%] Built target amrex_2d 2023-10-03T22:47:47.9845966Z [ 48%] Linking CXX static library lib/libbuildInfopyAMReX_2d.a 2023-10-03T22:47:48.0933947Z [ 48%] Built target buildInfopyAMReX_2d 2023-10-03T22:47:48.1017837Z [ 48%] Building CXX object CMakeFiles/buildInfopyAMReX_3d.dir/pyAMReX_3d/AMReX_buildInfo.cpp.o 2023-10-03T22:47:48.1450820Z [ 49%] Linking CXX static library lib/libbuildInfopyAMReX_3d.a 2023-10-03T22:47:48.2468692Z [ 49%] Built target buildInfopyAMReX_3d 2023-10-03T22:47:48.2580123Z [ 73%] Built target amrex_3d 2023-10-03T22:47:48.4042230Z [ 74%] Linking CXX shared module lib/site-packages/amrex/space1d/amrex_1d_pybind.cpython-39-x86_64-linux-gnu.so 2023-10-03T22:47:48.4141442Z [ 75%] Linking CXX shared module lib/site-packages/amrex/space2d/amrex_2d_pybind.cpython-39-x86_64-linux-gnu.so 2023-10-03T22:47:49.9878855Z [ 83%] Built target pyAMReX_1d 2023-10-03T22:47:50.0298335Z [ 91%] Built target pyAMReX_2d 2023-10-03T22:47:50.1412797Z [ 92%] Linking CXX shared module lib/site-packages/amrex/space3d/amrex_3d_pybind.cpython-39-x86_64-linux-gnu.so 2023-10-03T22:47:51.6329448Z [100%] Built target pyAMReX_3d 2023-10-03T22:47:52.1368095Z Processing /home/runner/work/pyamrex/pyamrex 2023-10-03T22:47:52.1402310Z Preparing metadata (pyproject.toml): started 2023-10-03T22:47:52.1407073Z Running command Preparing metadata (pyproject.toml) 2023-10-03T22:47:52.2784817Z /opt/hostedtoolcache/Python/3.9.18/x64/lib/python3.9/site-packages/setuptools/dist.py:314: InformationOnly: Normalizing '23.09' to '23.9' 2023-10-03T22:47:52.2785879Z self.metadata.version = self._normalize_version( 2023-10-03T22:47:52.2835549Z running dist_info 2023-10-03T22:47:52.2892675Z creating /tmp/pip-modern-metadata-n5s138jv/amrex.egg-info 2023-10-03T22:47:52.2914438Z writing /tmp/pip-modern-metadata-n5s138jv/amrex.egg-info/PKG-INFO 2023-10-03T22:47:52.2920104Z writing dependency_links to /tmp/pip-modern-metadata-n5s138jv/amrex.egg-info/dependency_links.txt 2023-10-03T22:47:52.2925705Z writing requirements to /tmp/pip-modern-metadata-n5s138jv/amrex.egg-info/requires.txt 2023-10-03T22:47:52.2931477Z writing top-level names to /tmp/pip-modern-metadata-n5s138jv/amrex.egg-info/top_level.txt 2023-10-03T22:47:52.2937275Z writing manifest file '/tmp/pip-modern-metadata-n5s138jv/amrex.egg-info/SOURCES.txt' 2023-10-03T22:47:52.2989442Z reading manifest file '/tmp/pip-modern-metadata-n5s138jv/amrex.egg-info/SOURCES.txt' 2023-10-03T22:47:52.2994914Z reading manifest template 'MANIFEST.in' 2023-10-03T22:47:52.4296966Z warning: no previously-included files matching '*/__pycache__/*' found anywhere in distribution 2023-10-03T22:47:52.4305462Z warning: no previously-included files matching '*.pyc' found anywhere in distribution 2023-10-03T22:47:52.4312428Z no previously-included directories found matching 'cmake-build*' 2023-10-03T22:47:52.4319096Z no previously-included directories found matching '.spack-env*' 2023-10-03T22:47:52.4325501Z adding license file 'LICENSE' 2023-10-03T22:47:52.4352394Z writing manifest file '/tmp/pip-modern-metadata-n5s138jv/amrex.egg-info/SOURCES.txt' 2023-10-03T22:47:52.4359024Z creating '/tmp/pip-modern-metadata-n5s138jv/amrex-23.9.dist-info' 2023-10-03T22:47:52.4797481Z Preparing metadata (pyproject.toml): finished with status 'done' 2023-10-03T22:47:52.4869504Z Building wheels for collected packages: amrex 2023-10-03T22:47:52.4880413Z Building wheel for amrex (pyproject.toml): started 2023-10-03T22:47:52.4882582Z Running command Building wheel for amrex (pyproject.toml) 2023-10-03T22:47:52.6269443Z /opt/hostedtoolcache/Python/3.9.18/x64/lib/python3.9/site-packages/setuptools/dist.py:314: InformationOnly: Normalizing '23.09' to '23.9' 2023-10-03T22:47:52.6274629Z self.metadata.version = self._normalize_version( 2023-10-03T22:47:52.6467404Z running bdist_wheel 2023-10-03T22:47:52.6591635Z running build 2023-10-03T22:47:52.6598384Z removing '_tmppythonbuild/lib' (and everything under it) 2023-10-03T22:47:52.6633822Z removing '_tmppythonbuild/bdist.linux-x86_64' (and everything under it) 2023-10-03T22:47:52.6639881Z '_tmppythonbuild/scripts-3.9' does not exist -- can't clean it 2023-10-03T22:47:52.6645510Z removing '_tmppythonbuild' 2023-10-03T22:47:52.6651290Z running build_py 2023-10-03T22:47:52.6664206Z creating _tmppythonbuild 2023-10-03T22:47:52.6669669Z creating _tmppythonbuild/lib 2023-10-03T22:47:52.6675003Z creating _tmppythonbuild/lib/amrex 2023-10-03T22:47:52.6681200Z copying src/amrex/StructOfArrays.py -> _tmppythonbuild/lib/amrex 2023-10-03T22:47:52.6686739Z copying src/amrex/Array4.py -> _tmppythonbuild/lib/amrex 2023-10-03T22:47:52.6692068Z copying src/amrex/__init__.py -> _tmppythonbuild/lib/amrex 2023-10-03T22:47:52.6696638Z copying src/amrex/MultiFab.py -> _tmppythonbuild/lib/amrex 2023-10-03T22:47:52.6703033Z copying src/amrex/PODVector.py -> _tmppythonbuild/lib/amrex 2023-10-03T22:47:52.6708356Z copying src/amrex/ArrayOfStructs.py -> _tmppythonbuild/lib/amrex 2023-10-03T22:47:52.6964031Z installing to _tmppythonbuild/bdist.linux-x86_64/wheel 2023-10-03T22:47:52.6971078Z running install 2023-10-03T22:47:52.7047504Z running install_lib 2023-10-03T22:47:52.7073383Z creating _tmppythonbuild/bdist.linux-x86_64 2023-10-03T22:47:52.7078963Z creating _tmppythonbuild/bdist.linux-x86_64/wheel 2023-10-03T22:47:52.7084250Z creating _tmppythonbuild/bdist.linux-x86_64/wheel/amrex 2023-10-03T22:47:52.7090168Z copying _tmppythonbuild/lib/amrex/StructOfArrays.py -> _tmppythonbuild/bdist.linux-x86_64/wheel/amrex 2023-10-03T22:47:52.7095736Z copying _tmppythonbuild/lib/amrex/Array4.py -> _tmppythonbuild/bdist.linux-x86_64/wheel/amrex 2023-10-03T22:47:52.7101006Z creating _tmppythonbuild/bdist.linux-x86_64/wheel/amrex/space3d 2023-10-03T22:47:52.7106425Z copying _tmppythonbuild/lib/amrex/space3d/__init__.py -> _tmppythonbuild/bdist.linux-x86_64/wheel/amrex/space3d 2023-10-03T22:47:52.7111940Z creating _tmppythonbuild/bdist.linux-x86_64/wheel/amrex/space3d/amrex_3d_pybind 2023-10-03T22:47:52.7117509Z copying _tmppythonbuild/lib/amrex/space3d/amrex_3d_pybind/ParallelDescriptor.pyi -> _tmppythonbuild/bdist.linux-x86_64/wheel/amrex/space3d/amrex_3d_pybind 2023-10-03T22:47:52.7123432Z copying _tmppythonbuild/lib/amrex/space3d/amrex_3d_pybind/__init__.pyi -> _tmppythonbuild/bdist.linux-x86_64/wheel/amrex/space3d/amrex_3d_pybind 2023-10-03T22:47:52.7129367Z copying _tmppythonbuild/lib/amrex/space3d/__init__.pyi -> _tmppythonbuild/bdist.linux-x86_64/wheel/amrex/space3d 2023-10-03T22:47:52.7135121Z copying _tmppythonbuild/lib/amrex/space3d/amrex_3d_pybind.cpython-39-x86_64-linux-gnu.so -> _tmppythonbuild/bdist.linux-x86_64/wheel/amrex/space3d 2023-10-03T22:47:52.7175952Z copying _tmppythonbuild/lib/amrex/__init__.py -> _tmppythonbuild/bdist.linux-x86_64/wheel/amrex 2023-10-03T22:47:52.7181707Z creating _tmppythonbuild/bdist.linux-x86_64/wheel/amrex/space2d 2023-10-03T22:47:52.7187433Z copying _tmppythonbuild/lib/amrex/space2d/amrex_2d_pybind.cpython-39-x86_64-linux-gnu.so -> _tmppythonbuild/bdist.linux-x86_64/wheel/amrex/space2d 2023-10-03T22:47:52.7263173Z copying _tmppythonbuild/lib/amrex/space2d/__init__.py -> _tmppythonbuild/bdist.linux-x86_64/wheel/amrex/space2d 2023-10-03T22:47:52.7269050Z creating _tmppythonbuild/bdist.linux-x86_64/wheel/amrex/space2d/amrex_2d_pybind 2023-10-03T22:47:52.7274724Z copying _tmppythonbuild/lib/amrex/space2d/amrex_2d_pybind/ParallelDescriptor.pyi -> _tmppythonbuild/bdist.linux-x86_64/wheel/amrex/space2d/amrex_2d_pybind 2023-10-03T22:47:52.7280379Z copying _tmppythonbuild/lib/amrex/space2d/amrex_2d_pybind/__init__.pyi -> _tmppythonbuild/bdist.linux-x86_64/wheel/amrex/space2d/amrex_2d_pybind 2023-10-03T22:47:52.7285999Z copying _tmppythonbuild/lib/amrex/space2d/__init__.pyi -> _tmppythonbuild/bdist.linux-x86_64/wheel/amrex/space2d 2023-10-03T22:47:52.7292108Z copying _tmppythonbuild/lib/amrex/MultiFab.py -> _tmppythonbuild/bdist.linux-x86_64/wheel/amrex 2023-10-03T22:47:52.7297855Z creating _tmppythonbuild/bdist.linux-x86_64/wheel/amrex/space1d 2023-10-03T22:47:52.7303289Z copying _tmppythonbuild/lib/amrex/space1d/__init__.py -> _tmppythonbuild/bdist.linux-x86_64/wheel/amrex/space1d 2023-10-03T22:47:52.7308702Z creating _tmppythonbuild/bdist.linux-x86_64/wheel/amrex/space1d/amrex_1d_pybind 2023-10-03T22:47:52.7314234Z copying _tmppythonbuild/lib/amrex/space1d/amrex_1d_pybind/ParallelDescriptor.pyi -> _tmppythonbuild/bdist.linux-x86_64/wheel/amrex/space1d/amrex_1d_pybind 2023-10-03T22:47:52.7319801Z copying _tmppythonbuild/lib/amrex/space1d/amrex_1d_pybind/__init__.pyi -> _tmppythonbuild/bdist.linux-x86_64/wheel/amrex/space1d/amrex_1d_pybind 2023-10-03T22:47:52.7325251Z copying _tmppythonbuild/lib/amrex/space1d/__init__.pyi -> _tmppythonbuild/bdist.linux-x86_64/wheel/amrex/space1d 2023-10-03T22:47:52.7331062Z copying _tmppythonbuild/lib/amrex/space1d/amrex_1d_pybind.cpython-39-x86_64-linux-gnu.so -> _tmppythonbuild/bdist.linux-x86_64/wheel/amrex/space1d 2023-10-03T22:47:52.7368925Z copying _tmppythonbuild/lib/amrex/PODVector.py -> _tmppythonbuild/bdist.linux-x86_64/wheel/amrex 2023-10-03T22:47:52.7374709Z copying _tmppythonbuild/lib/amrex/ArrayOfStructs.py -> _tmppythonbuild/bdist.linux-x86_64/wheel/amrex 2023-10-03T22:47:52.7379898Z running install_egg_info 2023-10-03T22:47:52.7408849Z running egg_info 2023-10-03T22:47:52.7430381Z writing src/amrex.egg-info/PKG-INFO 2023-10-03T22:47:52.7435854Z writing dependency_links to src/amrex.egg-info/dependency_links.txt 2023-10-03T22:47:52.7442194Z writing requirements to src/amrex.egg-info/requires.txt 2023-10-03T22:47:52.7447455Z writing top-level names to src/amrex.egg-info/top_level.txt 2023-10-03T22:47:52.7469772Z reading manifest file 'src/amrex.egg-info/SOURCES.txt' 2023-10-03T22:47:52.7494244Z reading manifest template 'MANIFEST.in' 2023-10-03T22:47:52.8810461Z warning: no previously-included files matching '*/__pycache__/*' found anywhere in distribution 2023-10-03T22:47:52.8818371Z warning: no previously-included files matching '*.pyc' found anywhere in distribution 2023-10-03T22:47:52.8823961Z no previously-included directories found matching 'cmake-build*' 2023-10-03T22:47:52.8829212Z no previously-included directories found matching '.spack-env*' 2023-10-03T22:47:52.8834273Z adding license file 'LICENSE' 2023-10-03T22:47:52.8891857Z writing manifest file 'src/amrex.egg-info/SOURCES.txt' 2023-10-03T22:47:52.8897814Z Copying src/amrex.egg-info to _tmppythonbuild/bdist.linux-x86_64/wheel/amrex-23.9-py3.9.egg-info 2023-10-03T22:47:52.8903053Z running install_scripts 2023-10-03T22:47:52.8924984Z creating _tmppythonbuild/bdist.linux-x86_64/wheel/amrex-23.9.dist-info/WHEEL 2023-10-03T22:47:52.8931243Z creating '/tmp/pip-wheel-gox3kyqy/.tmp-gco1vjw1/amrex-23.9-py3-none-any.whl' and adding '_tmppythonbuild/bdist.linux-x86_64/wheel' to it 2023-10-03T22:47:52.8936657Z adding 'amrex/Array4.py' 2023-10-03T22:47:52.8941746Z adding 'amrex/ArrayOfStructs.py' 2023-10-03T22:47:52.8946887Z adding 'amrex/MultiFab.py' 2023-10-03T22:47:52.8951904Z adding 'amrex/PODVector.py' 2023-10-03T22:47:52.8956936Z adding 'amrex/StructOfArrays.py' 2023-10-03T22:47:52.8961898Z adding 'amrex/__init__.py' 2023-10-03T22:47:52.8966866Z adding 'amrex/space1d/__init__.py' 2023-10-03T22:47:52.8972537Z adding 'amrex/space1d/__init__.pyi' 2023-10-03T22:47:53.3329719Z adding 'amrex/space1d/amrex_1d_pybind.cpython-39-x86_64-linux-gnu.so' 2023-10-03T22:47:53.3552805Z adding 'amrex/space1d/amrex_1d_pybind/ParallelDescriptor.pyi' 2023-10-03T22:47:53.3597393Z adding 'amrex/space1d/amrex_1d_pybind/__init__.pyi' 2023-10-03T22:47:53.3607799Z adding 'amrex/space2d/__init__.py' 2023-10-03T22:47:53.3613430Z adding 'amrex/space2d/__init__.pyi' 2023-10-03T22:47:53.8090090Z adding 'amrex/space2d/amrex_2d_pybind.cpython-39-x86_64-linux-gnu.so' 2023-10-03T22:47:53.8319184Z adding 'amrex/space2d/amrex_2d_pybind/ParallelDescriptor.pyi' 2023-10-03T22:47:53.8361773Z adding 'amrex/space2d/amrex_2d_pybind/__init__.pyi' 2023-10-03T22:47:53.8373583Z adding 'amrex/space3d/__init__.py' 2023-10-03T22:47:53.8378856Z adding 'amrex/space3d/__init__.pyi' 2023-10-03T22:47:54.2956511Z adding 'amrex/space3d/amrex_3d_pybind.cpython-39-x86_64-linux-gnu.so' 2023-10-03T22:47:54.3188198Z adding 'amrex/space3d/amrex_3d_pybind/ParallelDescriptor.pyi' 2023-10-03T22:47:54.3232864Z adding 'amrex/space3d/amrex_3d_pybind/__init__.pyi' 2023-10-03T22:47:54.3245415Z adding 'amrex-23.9.dist-info/LICENSE' 2023-10-03T22:47:54.3251712Z adding 'amrex-23.9.dist-info/METADATA' 2023-10-03T22:47:54.3257660Z adding 'amrex-23.9.dist-info/WHEEL' 2023-10-03T22:47:54.3263432Z adding 'amrex-23.9.dist-info/top_level.txt' 2023-10-03T22:47:54.3269188Z adding 'amrex-23.9.dist-info/RECORD' 2023-10-03T22:47:54.3275133Z removing _tmppythonbuild/bdist.linux-x86_64/wheel 2023-10-03T22:47:54.3546292Z Building wheel for amrex (pyproject.toml): finished with status 'done' 2023-10-03T22:47:54.3822154Z Created wheel for amrex: filename=amrex-23.9-py3-none-any.whl size=8796569 sha256=88458053ffc551b3cc93d91f51f24a8c73783c610a0a32e73f0eb73a8805505e 2023-10-03T22:47:54.3823714Z Stored in directory: /tmp/pip-ephem-wheel-cache-x5llys55/wheels/b5/5d/17/e03489273e68981695da2b92b260150366c9c95e86a8c47475 2023-10-03T22:47:54.3861887Z Successfully built amrex 2023-10-03T22:47:54.5202720Z [100%] Built target pip_wheel 2023-10-03T22:47:55.0120414Z Looking in links: amrex-whl 2023-10-03T22:47:55.0284026Z Processing ./amrex-whl/amrex-23.9-py3-none-any.whl 2023-10-03T22:47:55.0584805Z Installing collected packages: amrex 2023-10-03T22:47:55.0587100Z Attempting uninstall: amrex 2023-10-03T22:47:55.0597131Z Found existing installation: amrex 23.9 2023-10-03T22:47:55.0639222Z Uninstalling amrex-23.9: 2023-10-03T22:47:55.0651633Z Successfully uninstalled amrex-23.9 2023-10-03T22:47:55.2518586Z Successfully installed amrex-23.9 2023-10-03T22:47:55.3215964Z [100%] Built target pip_install 2023-10-03T22:47:55.3299372Z ##[group]Run mpiexec -np 1 python3 -m pytest tests/ 2023-10-03T22:47:55.3299770Z mpiexec -np 1 python3 -m pytest tests/ 2023-10-03T22:47:55.3357920Z shell: /usr/bin/bash -e {0} 2023-10-03T22:47:55.3358168Z env: 2023-10-03T22:47:55.3358376Z CC: gcc 2023-10-03T22:47:55.3358580Z CXX: g++ 2023-10-03T22:47:55.3358798Z CXXFLAGS: -O1 2023-10-03T22:47:55.3359016Z OMP_NUM_THREAD: 2 2023-10-03T22:47:55.3359330Z pythonLocation: /opt/hostedtoolcache/Python/3.9.18/x64 2023-10-03T22:47:55.3359723Z PKG_CONFIG_PATH: /opt/hostedtoolcache/Python/3.9.18/x64/lib/pkgconfig 2023-10-03T22:47:55.3360107Z Python_ROOT_DIR: /opt/hostedtoolcache/Python/3.9.18/x64 2023-10-03T22:47:55.3360467Z Python2_ROOT_DIR: /opt/hostedtoolcache/Python/3.9.18/x64 2023-10-03T22:47:55.3360828Z Python3_ROOT_DIR: /opt/hostedtoolcache/Python/3.9.18/x64 2023-10-03T22:47:55.3361174Z LD_LIBRARY_PATH: /opt/hostedtoolcache/Python/3.9.18/x64/lib 2023-10-03T22:47:55.3361467Z ##[endgroup] 2023-10-03T22:47:55.9527426Z ============================= test session starts ============================== 2023-10-03T22:47:55.9528911Z platform linux -- Python 3.9.18, pytest-7.4.2, pluggy-1.3.0 2023-10-03T22:47:55.9529517Z rootdir: /home/runner/work/pyamrex/pyamrex 2023-10-03T22:47:56.4828977Z collecting ...  2023-10-03T22:47:56.5069012Z collecting 126 items  2023-10-03T22:47:56.5069569Z collected 130 items  2023-10-03T22:47:56.5069804Z 2023-10-03T22:47:56.5545336Z tests/test_aos.py ... [ 2%] 2023-10-03T22:47:56.6019435Z tests/test_array4.py ..sss [ 6%] 2023-10-03T22:47:56.7690118Z tests/test_basefab.py .. [ 7%] 2023-10-03T22:47:56.8584632Z tests/test_box.py ........ [ 13%] 2023-10-03T22:47:56.8695255Z tests/test_coordsys.py . [ 14%] 2023-10-03T22:47:56.8921984Z tests/test_dim3.py .. [ 16%] 2023-10-03T22:47:56.9134375Z tests/test_farraybox.py .. [ 17%] 2023-10-03T22:47:57.0552259Z tests/test_geometry.py ............ [ 26%] 2023-10-03T22:47:57.0934672Z tests/test_indextype.py ss... [ 30%] 2023-10-03T22:47:57.1827346Z tests/test_intvect.py ss....... [ 37%] 2023-10-03T22:48:34.4930833Z tests/test_multifab.py ..............ssssssssssssssssssss [ 63%] 2023-10-03T22:48:34.5090779Z tests/test_parmparse.py . [ 64%] 2023-10-03T22:48:34.5556660Z tests/test_particle.py .... [ 67%] 2023-10-03T22:48:34.6582312Z tests/test_particleContainer.py ..... [ 71%] 2023-10-03T22:48:34.7309593Z tests/test_particleTile.py ...... [ 76%] 2023-10-03T22:48:34.7435526Z tests/test_periodicity.py .s [ 77%] 2023-10-03T22:48:34.7665334Z tests/test_podvector.py .. [ 79%] 2023-10-03T22:48:34.8248082Z tests/test_realbox.py ..... [ 83%] 2023-10-03T22:48:35.0106724Z tests/test_realvect.py .ss............... [ 96%] 2023-10-03T22:48:35.0355275Z tests/test_soa.py .. [ 98%] 2023-10-03T22:48:35.0676524Z tests/test_utility.py .. [100%] 2023-10-03T22:48:35.0676873Z 2023-10-03T22:48:35.0677265Z ======================= 100 passed, 30 skipped in 39.11s ======================= 2023-10-03T22:48:35.1724614Z ##[group]Run stefanzweifel/git-auto-commit-action@v4 2023-10-03T22:48:35.1724932Z with: 2023-10-03T22:48:35.1725182Z commit_message: Update Stub Files 2023-10-03T22:48:35.1725464Z branch: array4-numpy-copy-host 2023-10-03T22:48:35.1725728Z file_pattern: . 2023-10-03T22:48:35.1725961Z repository: . 2023-10-03T22:48:35.1726221Z commit_user_name: github-actions[bot] 2023-10-03T22:48:35.1726583Z commit_user_email: 41898282+github-actions[bot]@users.noreply.github.com 2023-10-03T22:48:35.1726960Z commit_author: ax3l 2023-10-03T22:48:35.1727267Z skip_dirty_check: false 2023-10-03T22:48:35.1727511Z skip_fetch: false 2023-10-03T22:48:35.1727746Z skip_checkout: false 2023-10-03T22:48:35.1728187Z disable_globbing: false 2023-10-03T22:48:35.1729720Z create_branch: false 2023-10-03T22:48:35.1729969Z internal_git_binary: git 2023-10-03T22:48:35.1730198Z env: 2023-10-03T22:48:35.1730396Z CC: gcc 2023-10-03T22:48:35.1730600Z CXX: g++ 2023-10-03T22:48:35.1730869Z CXXFLAGS: -O1 2023-10-03T22:48:35.1731138Z OMP_NUM_THREAD: 2 2023-10-03T22:48:35.1731450Z pythonLocation: /opt/hostedtoolcache/Python/3.9.18/x64 2023-10-03T22:48:35.1731844Z PKG_CONFIG_PATH: /opt/hostedtoolcache/Python/3.9.18/x64/lib/pkgconfig 2023-10-03T22:48:35.1732232Z Python_ROOT_DIR: /opt/hostedtoolcache/Python/3.9.18/x64 2023-10-03T22:48:35.1732593Z Python2_ROOT_DIR: /opt/hostedtoolcache/Python/3.9.18/x64 2023-10-03T22:48:35.1732947Z Python3_ROOT_DIR: /opt/hostedtoolcache/Python/3.9.18/x64 2023-10-03T22:48:35.1733309Z LD_LIBRARY_PATH: /opt/hostedtoolcache/Python/3.9.18/x64/lib 2023-10-03T22:48:35.1733591Z ##[endgroup] 2023-10-03T22:48:35.2330161Z Started: bash /home/runner/work/_actions/stefanzweifel/git-auto-commit-action/v4/entrypoint.sh 2023-10-03T22:48:35.2333975Z INPUT_REPOSITORY value: . 2023-10-03T22:48:35.2336949Z INPUT_STATUS_OPTIONS: 2023-10-03T22:48:35.2342019Z INPUT_FILE_PATTERN: . 2023-10-03T22:48:35.2409731Z INPUT_BRANCH value: array4-numpy-copy-host 2023-10-03T22:48:35.5411192Z Already on 'array4-numpy-copy-host' 2023-10-03T22:48:35.5411544Z M src/amrex/space1d/__init__.pyi 2023-10-03T22:48:35.5411866Z M src/amrex/space1d/amrex_1d_pybind/__init__.pyi 2023-10-03T22:48:35.5412160Z M src/amrex/space2d/__init__.pyi 2023-10-03T22:48:35.5412467Z M src/amrex/space2d/amrex_2d_pybind/__init__.pyi 2023-10-03T22:48:35.5412770Z M src/amrex/space3d/__init__.pyi 2023-10-03T22:48:35.5413076Z M src/amrex/space3d/amrex_3d_pybind/__init__.pyi 2023-10-03T22:48:35.5413539Z Your branch is up to date with 'origin/array4-numpy-copy-host'. 2023-10-03T22:48:35.5416409Z INPUT_ADD_OPTIONS: 2023-10-03T22:48:35.5416951Z INPUT_FILE_PATTERN: . 2023-10-03T22:48:35.6330692Z INPUT_COMMIT_OPTIONS: 2023-10-03T22:48:35.6332513Z INPUT_COMMIT_USER_NAME: github-actions[bot] 2023-10-03T22:48:35.6333305Z INPUT_COMMIT_USER_EMAIL: 41898282+github-actions[bot]@users.noreply.github.com 2023-10-03T22:48:35.6334149Z INPUT_COMMIT_MESSAGE: Update Stub Files 2023-10-03T22:48:35.6334757Z INPUT_COMMIT_AUTHOR: ax3l 2023-10-03T22:48:35.6847695Z [array4-numpy-copy-host 0204cd4] Update Stub Files 2023-10-03T22:48:35.6848734Z Author: ax3l 2023-10-03T22:48:35.6849735Z 6 files changed, 12414 insertions(+), 28290 deletions(-) 2023-10-03T22:48:35.6871132Z INPUT_TAGGING_MESSAGE: 2023-10-03T22:48:35.6871742Z No tagging message supplied. No tag will be added. 2023-10-03T22:48:35.6872446Z INPUT_PUSH_OPTIONS: 2023-10-03T22:48:35.8294707Z remote: Permission to ax3l/pyamrex.git denied to github-actions[bot]. 2023-10-03T22:48:35.8295980Z fatal: unable to access 'https://github.com/ax3l/pyamrex/': The requested URL returned error: 403 2023-10-03T22:48:35.8344990Z Error: Invalid status code: 128 2023-10-03T22:48:35.8347492Z at ChildProcess. (/home/runner/work/_actions/stefanzweifel/git-auto-commit-action/v4/index.js:17:19) 2023-10-03T22:48:35.8348933Z at ChildProcess.emit (node:events:513:28) 2023-10-03T22:48:35.8349970Z at maybeClose (node:internal/child_process:1100:16) 2023-10-03T22:48:35.8350890Z at Process.ChildProcess._handle.onexit (node:internal/child_process:304:5) { 2023-10-03T22:48:35.8351480Z code: 128 2023-10-03T22:48:35.8352119Z } 2023-10-03T22:48:35.8352638Z Error: Invalid status code: 128 2023-10-03T22:48:35.8353720Z at ChildProcess. (/home/runner/work/_actions/stefanzweifel/git-auto-commit-action/v4/index.js:17:19) 2023-10-03T22:48:35.8354416Z at ChildProcess.emit (node:events:513:28) 2023-10-03T22:48:35.8355225Z at maybeClose (node:internal/child_process:1100:16) 2023-10-03T22:48:35.8355859Z at Process.ChildProcess._handle.onexit (node:internal/child_process:304:5) 2023-10-03T22:48:35.8461780Z Post job cleanup. 2023-10-03T22:48:35.9524202Z [command]/usr/bin/git version 2023-10-03T22:48:35.9576766Z git version 2.42.0 2023-10-03T22:48:35.9625317Z Temporarily overriding HOME='/home/runner/work/_temp/90f703d4-60ef-4d18-8ff8-c09036022915' before making global git config changes 2023-10-03T22:48:35.9627384Z Adding repository directory to the temporary git global config as a safe directory 2023-10-03T22:48:35.9634046Z [command]/usr/bin/git config --global --add safe.directory /home/runner/work/pyamrex/pyamrex 2023-10-03T22:48:35.9682077Z [command]/usr/bin/git config --local --name-only --get-regexp core\.sshCommand 2023-10-03T22:48:35.9725329Z [command]/usr/bin/git submodule foreach --recursive sh -c "git config --local --name-only --get-regexp 'core\.sshCommand' && git config --local --unset-all 'core.sshCommand' || :" 2023-10-03T22:48:35.9998659Z [command]/usr/bin/git config --local --name-only --get-regexp http\.https\:\/\/github\.com\/\.extraheader 2023-10-03T22:48:36.0018828Z http.https://github.com/.extraheader 2023-10-03T22:48:36.0033758Z [command]/usr/bin/git config --local --unset-all http.https://github.com/.extraheader 2023-10-03T22:48:36.0075808Z [command]/usr/bin/git submodule foreach --recursive sh -c "git config --local --name-only --get-regexp 'http\.https\:\/\/github\.com\/\.extraheader' && git config --local --unset-all 'http.https://github.com/.extraheader' || :" 2023-10-03T22:48:36.0613082Z Cleaning up orphan processes