diff --git a/src/module/TrainModule.java b/src/module/TrainModule.java
index 7d6fc0c..4ff924c 100644
--- a/src/module/TrainModule.java
+++ b/src/module/TrainModule.java
@@ -210,7 +210,7 @@ private static void printManual() {
 		
 		UFCGMainPipeline.printGeneral();
 		
-		System.out.println(ANSIHandler.wrapper("\n Following binaries should be on the enviornment PATH: ", 'y'));
+		System.out.println(ANSIHandler.wrapper("\n Following binaries should be on the environment PATH: ", 'y'));
 		System.out.println(ANSIHandler.wrapper(" Binary               Required by", 'c'));
 		System.out.println(ANSIHandler.wrapper(" fastBlockSearch      profile", 'x'));
 		System.out.println(ANSIHandler.wrapper(" augustus             profile", 'x'));
@@ -364,7 +364,7 @@ else if(SESSION_UID.equals(GenericConfig.SESSION_UID)){
 					MARKERS.remove((int) remove.get(i));
 					MNAMES.remove((int) remove.get(i));
 				}
-				if(MARKERS.size() == 0) break;
+				if(MARKERS.isEmpty()) break;
 				
 				// prepare next iteration
 				seqs = new String[MARKERS.size()];
diff --git a/src/pipeline/ModuleHandler.java b/src/pipeline/ModuleHandler.java
index 098090b..fe76ca8 100644
--- a/src/pipeline/ModuleHandler.java
+++ b/src/pipeline/ModuleHandler.java
@@ -26,7 +26,7 @@ public ModuleHandler(int module, String[] args) {
 		if(argList.contains("-h") || argList.contains("-help") || argList.contains("--help")) {
 			Prompt.SUPPRESS = true;
 			help = true;
-		} else if(module == UFCGMainPipeline.MODULE_PROFILE && (argList.contains("-hh") || argList.contains("--hh"))) {
+		} else if((module == UFCGMainPipeline.MODULE_PROFILE || module == UFCGMainPipeline.MODULE_PROFILE_RNA) && (argList.contains("-hh") || argList.contains("--hh"))) {
 			Prompt.SUPPRESS = true;
 			help = true;
 		} else {