diff --git a/.github/workflows/stryker.yaml b/.github/workflows/stryker.yaml
index 0911376d..9c632b82 100644
--- a/.github/workflows/stryker.yaml
+++ b/.github/workflows/stryker.yaml
@@ -7,10 +7,10 @@ on:
     branches:
       - main
 
-permissions:
-  contents: read
-  pull-requests: write
-  repository-projects: write
+# permissions:
+#   contents: read
+#   pull-requests: write
+#   repository-projects: write
 
 jobs:
   stryker-js:
diff --git a/script/generate_md_report.py b/script/generate_md_report.py
index 5e82c6b5..43ae9b20 100644
--- a/script/generate_md_report.py
+++ b/script/generate_md_report.py
@@ -1,10 +1,10 @@
+"""Generate MD report based on a json report"""
 import json
 import os
 import sys
 from collections import defaultdict
 from urllib.parse import quote
 
-
 def load_json_file(file_path: str) -> dict:
     """Load JSON data from a file."""
     with open(file_path, "r", encoding="utf-8") as file:
@@ -12,6 +12,7 @@ def load_json_file(file_path: str) -> dict:
 
 
 def count_mutation_statuses(report: dict) -> dict:
+    """Count the mutation statuses"""
     status_counts = {}
     total_counts: int = defaultdict(int)
 
@@ -43,18 +44,16 @@ def count_mutation_statuses(report: dict) -> dict:
         }
 
     # Calculate overall totals
-    total_killed = total_counts["Killed"]
-    total_survived = total_counts["Survived"]
-    total_timeout = total_counts["Timeout"]
-    total_relevant = total_killed + total_survived + total_timeout
+    total_counts["Timeout"] = total_counts["Timeout"]
+    total_relevant = total_counts["Killed"] + total_counts["Survived"] + total_counts["Timeout"]
 
-    total_score = (total_killed / total_relevant * 100) if total_relevant > 0 else 0
+    total_score = (total_counts["Killed"] / total_relevant * 100) if total_relevant > 0 else 0
 
     status_counts["All"] = {
         "score": total_score,
-        "killed": total_killed,
-        "timeout": total_timeout,
-        "survived": total_survived,
+        "killed": total_counts["Killed"],
+        "timeout": total_counts["Timeout"],
+        "survived": total_counts["Survived"],
         "no_cov": total_counts["NoCoverage"],
         "errors": total_counts["CompileError"],
         "file_name": None,  # No link for the total row
@@ -63,7 +62,7 @@ def count_mutation_statuses(report: dict) -> dict:
     return status_counts
 
 
-def generate_markdown_report(status_counts: dict, base_url: str) -> str:
+def generate_markdown_report(status_counts: dict, url: str) -> str:
     """Generate a Markdown report summarizing
     mutation status counts per file."""
     markdown = "# Stryker report for changed files\n\n"
@@ -77,7 +76,7 @@ def generate_markdown_report(status_counts: dict, base_url: str) -> str:
             # Remove 'src/' from the file path and create
             # a URL link to the mutation report
             relative_path = counts["file_name"].replace("src/", "")
-            link = f"{base_url}#mutant/{quote(relative_path)}"
+            link = f"{url}#mutant/{quote(relative_path)}"
             file_link = f"[{file_name}]({link})"
         else:
             file_link = file_name
@@ -97,19 +96,19 @@ def save_markdown_file(markdown: str, output_path: str) -> None:
     print(f"Markdown report generated at {output_path}")
 
 
-def main(input_file: str, output_file: str, base_url: str):
+def main(file: str, out_file: str, url: str):
     """Main function to process the mutation report and generate a summary."""
     # Load the JSON data
-    mutation_report = load_json_file(input_file)
+    mutation_report = load_json_file(file)
 
     # Count the mutation statuses per file and calculate scores
     status_counts = count_mutation_statuses(mutation_report)
 
     # Generate the Markdown report
-    markdown_report = generate_markdown_report(status_counts, base_url)
+    markdown_report = generate_markdown_report(status_counts, url)
 
     # Save the Markdown report to a file
-    save_markdown_file(markdown_report, output_file)
+    save_markdown_file(markdown_report, out_file)
 
 
 if __name__ == "__main__":