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Version 0.4.0
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@t-neumann t-neumann released this 15 Dec 09:55
· 17 commits to master since this release
v0.4.0
dd0047d

Major refactoring:

  • Rewriting source for full python3 compatibility
  • All dependencies now provided externally, *environment.yml file added to pull in dependencies from Bioconda
    • NextGenMap v0.5.2 -> v0.5.5. Takes care of flipped basequalities in supplementary alignments.
    • Varscan2 v2.4.1 -> v2.4.4
    • Samtools v1.9 -> v1.10
    • RNASeqReadSimulator by Wei Li added as subtree
  • Dockerfile moved and updated to run with miniconda
  • Travis-CI testset updated.
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