From e9f376f638f7c2f318b4951f9400ad0096d58df1 Mon Sep 17 00:00:00 2001
From: Elizabeth Berrigan <berri104@gmail.com>
Date: Mon, 15 Jul 2024 13:08:53 -0700
Subject: [PATCH 01/56] update .gitignore

---
 .gitignore | 38 ++++----------------------------------
 1 file changed, 4 insertions(+), 34 deletions(-)

diff --git a/.gitignore b/.gitignore
index 82f9275..73a7596 100644
--- a/.gitignore
+++ b/.gitignore
@@ -20,6 +20,7 @@ parts/
 sdist/
 var/
 wheels/
+pip-wheel-metadata/
 share/python-wheels/
 *.egg-info/
 .installed.cfg
@@ -49,7 +50,6 @@ coverage.xml
 *.py,cover
 .hypothesis/
 .pytest_cache/
-cover/
 
 # Translations
 *.mo
@@ -72,7 +72,6 @@ instance/
 docs/_build/
 
 # PyBuilder
-.pybuilder/
 target/
 
 # Jupyter Notebook
@@ -83,9 +82,7 @@ profile_default/
 ipython_config.py
 
 # pyenv
-#   For a library or package, you might want to ignore these files since the code is
-#   intended to run in multiple environments; otherwise, check them in:
-# .python-version
+.python-version
 
 # pipenv
 #   According to pypa/pipenv#598, it is recommended to include Pipfile.lock in version control.
@@ -94,24 +91,7 @@ ipython_config.py
 #   install all needed dependencies.
 #Pipfile.lock
 
-# poetry
-#   Similar to Pipfile.lock, it is generally recommended to include poetry.lock in version control.
-#   This is especially recommended for binary packages to ensure reproducibility, and is more
-#   commonly ignored for libraries.
-#   https://python-poetry.org/docs/basic-usage/#commit-your-poetrylock-file-to-version-control
-#poetry.lock
-
-# pdm
-#   Similar to Pipfile.lock, it is generally recommended to include pdm.lock in version control.
-#pdm.lock
-#   pdm stores project-wide configurations in .pdm.toml, but it is recommended to not include it
-#   in version control.
-#   https://pdm.fming.dev/latest/usage/project/#working-with-version-control
-.pdm.toml
-.pdm-python
-.pdm-build/
-
-# PEP 582; used by e.g. github.com/David-OConnor/pyflow and github.com/pdm-project/pdm
+# PEP 582; used by e.g. github.com/David-OConnor/pyflow
 __pypackages__/
 
 # Celery stuff
@@ -148,15 +128,5 @@ dmypy.json
 # Pyre type checker
 .pyre/
 
-# pytype static type analyzer
-.pytype/
 
-# Cython debug symbols
-cython_debug/
-
-# PyCharm
-#  JetBrains specific template is maintained in a separate JetBrains.gitignore that can
-#  be found at https://github.com/github/gitignore/blob/main/Global/JetBrains.gitignore
-#  and can be added to the global gitignore or merged into this file.  For a more nuclear
-#  option (not recommended) you can uncomment the following to ignore the entire idea folder.
-#.idea/
+build.*/
\ No newline at end of file

From 62ed72cf30871bcf10db53790325e9f7979401e1 Mon Sep 17 00:00:00 2001
From: Elizabeth Berrigan <berri104@gmail.com>
Date: Mon, 15 Jul 2024 13:13:27 -0700
Subject: [PATCH 02/56] add windows/linux tensorflow conda package files from
 conda_packages repo

---
 .conda.tensorflow/bld.bat                  |  7 +++
 .conda.tensorflow/build.sh                 | 15 +++++++
 .conda.tensorflow/meta.yaml                | 51 ++++++++++++++++++++++
 .conda.tensorflow/tensorflow_activate.sh   |  6 +++
 .conda.tensorflow/tensorflow_deactivate.sh |  4 ++
 environment.tensorflow.yml                 | 19 ++++++++
 requirements.tensorflow.txt                |  3 ++
 7 files changed, 105 insertions(+)
 create mode 100644 .conda.tensorflow/bld.bat
 create mode 100644 .conda.tensorflow/build.sh
 create mode 100644 .conda.tensorflow/meta.yaml
 create mode 100644 .conda.tensorflow/tensorflow_activate.sh
 create mode 100644 .conda.tensorflow/tensorflow_deactivate.sh
 create mode 100644 environment.tensorflow.yml
 create mode 100644 requirements.tensorflow.txt

diff --git a/.conda.tensorflow/bld.bat b/.conda.tensorflow/bld.bat
new file mode 100644
index 0000000..75ef64d
--- /dev/null
+++ b/.conda.tensorflow/bld.bat
@@ -0,0 +1,7 @@
+@echo off
+
+set PIP_NO_INDEX=False
+set PIP_NO_DEPENDENCIES=False
+set PIP_IGNORE_INSTALLED=False
+
+pip install --no-cache-dir -r .\requirements.tensorflow.txt
\ No newline at end of file
diff --git a/.conda.tensorflow/build.sh b/.conda.tensorflow/build.sh
new file mode 100644
index 0000000..775d217
--- /dev/null
+++ b/.conda.tensorflow/build.sh
@@ -0,0 +1,15 @@
+#!/usr/bin/env bash
+
+export PIP_NO_INDEX=False
+export PIP_NO_DEPENDENCIES=False
+export PIP_IGNORE_INSTALLED=False
+
+pip install --no-cache-dir -r ./requirements.tensorflow.txt
+
+# Copy the activate scripts to $PREFIX/etc/conda/activate.d.
+# This will allow them to be run on environment activation.
+for CHANGE in "activate" "deactivate"
+do
+    mkdir -p "${PREFIX}/etc/conda/${CHANGE}.d"
+    cp "${RECIPE_DIR}/tensorflow_${CHANGE}.sh" "${PREFIX}/etc/conda/${CHANGE}.d/tensorflow_${CHANGE}.sh"
+done
\ No newline at end of file
diff --git a/.conda.tensorflow/meta.yaml b/.conda.tensorflow/meta.yaml
new file mode 100644
index 0000000..91b6970
--- /dev/null
+++ b/.conda.tensorflow/meta.yaml
@@ -0,0 +1,51 @@
+# Ref: https://docs.conda.io/projects/conda-build/en/latest/resources/define-metadata.html
+
+package:
+  name: tensorflow
+  version: 2.9.0a0
+
+about:
+  home: https://tensorflow.org
+  license: Apache License
+  summary: 'TensorFlow conda package based on the PyPI wheels.
+
+  For GPU support, install cudatoolkit 11.3.1 and cudnn 8.2.1 which are available as conda packages on the default channel.'
+
+build:
+  number: 4
+
+source:
+  path: ../
+
+requirements:
+  build:
+    - '{{ compiler("c") }}'
+    - '{{ compiler("cxx") }}'
+
+  host:
+    - python>=3.10.0,<3.11.0 # Trying python 3.10
+    - numpy
+    - h5py
+    - protobuf # 3.20.3 is what pip pulls in
+    - certifi # 2024.2.28 is what pip pulls in
+    - importlib-metadata # 6.7.0 is what pip pulls in
+    - six # 1.16.0 is what pip pulls in
+    - typing-extensions # 4.7.1 is what pip pulls in
+    - zipp # 3.15.0 is what pip pulls in
+    - pip
+
+  run:
+    - python>=3.10.0,<3.11.0 # Trying python 3.10
+    - numpy
+    - h5py
+    - protobuf
+    - certifi
+    - importlib-metadata
+    - six
+    - typing-extensions
+    - zipp
+    - pip
+
+# test:
+#   imports:
+#     - tensorflow
\ No newline at end of file
diff --git a/.conda.tensorflow/tensorflow_activate.sh b/.conda.tensorflow/tensorflow_activate.sh
new file mode 100644
index 0000000..885879a
--- /dev/null
+++ b/.conda.tensorflow/tensorflow_activate.sh
@@ -0,0 +1,6 @@
+#!/bin/sh
+
+# Remember the old library path for when we deactivate
+export SLEAP_OLD_LD_LIBRARY_PATH=$LD_LIBRARY_PATH
+# Help CUDA find GPUs!
+export LD_LIBRARY_PATH=$CONDA_PREFIX/lib:$LD_LIBRARY_PATH
\ No newline at end of file
diff --git a/.conda.tensorflow/tensorflow_deactivate.sh b/.conda.tensorflow/tensorflow_deactivate.sh
new file mode 100644
index 0000000..857c0f4
--- /dev/null
+++ b/.conda.tensorflow/tensorflow_deactivate.sh
@@ -0,0 +1,4 @@
+#!/bin/sh
+
+# Reset to the old library path for when deactivating the environment
+export LD_LIBRARY_PATH=$SLEAP_OLD_LD_LIBRARY_PATH
\ No newline at end of file
diff --git a/environment.tensorflow.yml b/environment.tensorflow.yml
new file mode 100644
index 0000000..d379bc4
--- /dev/null
+++ b/environment.tensorflow.yml
@@ -0,0 +1,19 @@
+name: build
+
+channels:
+  - conda-forge
+  - anaconda
+
+dependencies:
+# - python=3.7
+# - conda-forge::python >=3.9.0,<3.10.0 # Trying python 3.9
+- conda-build
+- anaconda-client
+- conda-verify
+# - conda-forge::numpy=1.21.5
+# - conda-forge::pyside2=5.13.2
+# - conda-forge::h5py=3.6.0
+# - conda-forge::scipy=1.7.3
+- pip
+- pip:
+    # - "--requirement=./requirements.tensorflow.txt"
\ No newline at end of file
diff --git a/requirements.tensorflow.txt b/requirements.tensorflow.txt
new file mode 100644
index 0000000..841e34e
--- /dev/null
+++ b/requirements.tensorflow.txt
@@ -0,0 +1,3 @@
+# tensorflow==2.10.1  # https://github.com/talmolab/sleap/issues/1721
+# tensorflow==2.7.0 # 2.7.0 worked in the past
+tensorflow==2.9.2 # Trying to match the version of tensorflow-macos
\ No newline at end of file

From 935222622459f22f0ed8a3ee5967beb2d19f53f3 Mon Sep 17 00:00:00 2001
From: Elizabeth Berrigan <berri104@gmail.com>
Date: Mon, 15 Jul 2024 13:51:40 -0700
Subject: [PATCH 03/56] update environment name

---
 environment.tensorflow.yml | 2 +-
 1 file changed, 1 insertion(+), 1 deletion(-)

diff --git a/environment.tensorflow.yml b/environment.tensorflow.yml
index d379bc4..692aa20 100644
--- a/environment.tensorflow.yml
+++ b/environment.tensorflow.yml
@@ -1,4 +1,4 @@
-name: build
+name: build_tensorflow
 
 channels:
   - conda-forge

From b73b2fed9172611cf582bf6eeefa2e5ee0d44153 Mon Sep 17 00:00:00 2001
From: Elizabeth Berrigan <berri104@gmail.com>
Date: Mon, 15 Jul 2024 14:58:58 -0700
Subject: [PATCH 04/56] add workflow to build tensorflow conda package

---
 .github/workflows/build_tensorflow.yml | 78 ++++++++++++++++++++++++++
 1 file changed, 78 insertions(+)
 create mode 100644 .github/workflows/build_tensorflow.yml

diff --git a/.github/workflows/build_tensorflow.yml b/.github/workflows/build_tensorflow.yml
new file mode 100644
index 0000000..068bceb
--- /dev/null
+++ b/.github/workflows/build_tensorflow.yml
@@ -0,0 +1,78 @@
+name: Build TensorFlow
+
+on:
+  push:
+    branches:
+      - main
+      - elizabeth/add-windows-linux-tensorflow-conda-package
+    paths:
+      - '.github/workflows/build_tensorflow.yml'
+      - '.conda.tensorflow/**'
+      - 'environment.tensorflow.yml'
+      - 'requirements.tensorflow.txt'
+
+jobs:
+  build:
+    name: Build package (${{ matrix.os }})
+    runs-on: ${{ matrix.os }}
+    strategy:
+      fail-fast: false
+      matrix:
+        os: ["ubuntu-22.04", "windows-2022"]
+    steps:
+      # Setup
+      - uses: actions/checkout@v4
+      # - name: Cache conda
+      #   uses: actions/cache@v1
+      #   env:
+      #     # Increase this value to reset cache if environment_build.yml has not changed
+      #     CACHE_NUMBER: 0
+      #   with:
+      #     path: ~/conda_pkgs_dir
+      #     key: ${{ runner.os }}-conda-${{ env.CACHE_NUMBER }}-${{ hashFiles('environment.tensorflow.yml', 'requirements.tensorflow.txt') }}
+      - name: Setup Miniconda
+        # https://github.com/conda-incubator/setup-miniconda
+        uses: conda-incubator/setup-miniconda@v3.0.3
+        with:
+          python-version: 3.10
+          # use-only-tar-bz2: true # IMPORTANT: This needs to be set for caching to work properly!
+          environment-file: environment.tensorflow.yml
+          activate-environment: build_tensorflow
+      - name: Print environment info
+        shell: bash -l {0}
+        run: |
+          which python
+          conda info
+
+      # Build conda package
+      - name: Build conda package (Windows)
+        if: matrix.os == 'windows-2022'
+        shell: powershell
+        run: |
+          conda activate build_tensorflow
+          conda build .conda.tensorflow --output-folder build.tensorflow -c conda-forge
+      - name: Build conda package (Ubuntu)
+        if: matrix.os == 'ubuntu-22.04'
+        shell: bash -l {0}
+        run: |
+          conda build .conda.tensorflow --output-folder build.tensorflow -c conda-forge
+
+      # # Upload conda package
+      # - name: Upload to Anaconda (Windows)
+      #   if: matrix.os == 'windows-2022'
+      #   env:
+      #     ANACONDA_LOGIN: ${{ secrets.ANACONDA_LOGIN }}
+      #   shell: powershell
+      #   run: |
+      #     anaconda login --username sleap --password "$env:ANACONDA_LOGIN"
+      #     anaconda -v upload "build.tensorflow\win-64\*.tar.bz2" --label dev
+      #     anaconda logout
+      # - name: Upload to Anaconda (Ubuntu)
+      #   if: matrix.os == 'ubuntu-22.04'
+      #   env:
+      #     ANACONDA_LOGIN: ${{ secrets.ANACONDA_LOGIN }}
+      #   shell: bash -l {0}
+      #   run: |
+      #     anaconda login --username sleap --password "$ANACONDA_LOGIN"
+      #     anaconda -v upload build.tensorflow/linux-64/*.tar.bz2 --label dev
+      #     anaconda logout

From 7d49ee85522f809cc17cee8e3bf7717c8a7a6cb6 Mon Sep 17 00:00:00 2001
From: Elizabeth Berrigan <berri104@gmail.com>
Date: Mon, 15 Jul 2024 15:05:51 -0700
Subject: [PATCH 05/56] update environment file which is not building, possible
 because of comments

---
 environment.tensorflow.yml | 11 +++--------
 1 file changed, 3 insertions(+), 8 deletions(-)

diff --git a/environment.tensorflow.yml b/environment.tensorflow.yml
index 692aa20..d0e8145 100644
--- a/environment.tensorflow.yml
+++ b/environment.tensorflow.yml
@@ -3,17 +3,12 @@ name: build_tensorflow
 channels:
   - conda-forge
   - anaconda
+  - defaults
 
 dependencies:
-# - python=3.7
-# - conda-forge::python >=3.9.0,<3.10.0 # Trying python 3.9
 - conda-build
 - anaconda-client
 - conda-verify
-# - conda-forge::numpy=1.21.5
-# - conda-forge::pyside2=5.13.2
-# - conda-forge::h5py=3.6.0
-# - conda-forge::scipy=1.7.3
 - pip
-- pip:
-    # - "--requirement=./requirements.tensorflow.txt"
\ No newline at end of file
+
+- pip:
\ No newline at end of file

From 4cb9e9370a941ce2710cc8f04ae80cfc17ee5d90 Mon Sep 17 00:00:00 2001
From: Elizabeth Berrigan <berri104@gmail.com>
Date: Mon, 15 Jul 2024 15:17:48 -0700
Subject: [PATCH 06/56] fix workflow: python version needs to be in quotes and
 each step should have a name, remove cache comments

---
 .github/workflows/build_tensorflow.yml | 18 ++++++------------
 1 file changed, 6 insertions(+), 12 deletions(-)

diff --git a/.github/workflows/build_tensorflow.yml b/.github/workflows/build_tensorflow.yml
index 068bceb..0b784c9 100644
--- a/.github/workflows/build_tensorflow.yml
+++ b/.github/workflows/build_tensorflow.yml
@@ -20,22 +20,16 @@ jobs:
       matrix:
         os: ["ubuntu-22.04", "windows-2022"]
     steps:
-      # Setup
-      - uses: actions/checkout@v4
-      # - name: Cache conda
-      #   uses: actions/cache@v1
-      #   env:
-      #     # Increase this value to reset cache if environment_build.yml has not changed
-      #     CACHE_NUMBER: 0
-      #   with:
-      #     path: ~/conda_pkgs_dir
-      #     key: ${{ runner.os }}-conda-${{ env.CACHE_NUMBER }}-${{ hashFiles('environment.tensorflow.yml', 'requirements.tensorflow.txt') }}
+      # Checkout the repository
+      - name: Checkout
+        uses: actions/checkout@v4
+
+      # Setup Miniconda
       - name: Setup Miniconda
         # https://github.com/conda-incubator/setup-miniconda
         uses: conda-incubator/setup-miniconda@v3.0.3
         with:
-          python-version: 3.10
-          # use-only-tar-bz2: true # IMPORTANT: This needs to be set for caching to work properly!
+          python-version: "3.10"
           environment-file: environment.tensorflow.yml
           activate-environment: build_tensorflow
       - name: Print environment info

From edf7054ecb07a8dc586dd5f6634222470cd0f92c Mon Sep 17 00:00:00 2001
From: Elizabeth Berrigan <berri104@gmail.com>
Date: Mon, 15 Jul 2024 16:48:04 -0700
Subject: [PATCH 07/56] try different minor version

---
 requirements.tensorflow.txt | 2 +-
 1 file changed, 1 insertion(+), 1 deletion(-)

diff --git a/requirements.tensorflow.txt b/requirements.tensorflow.txt
index 841e34e..227e6b0 100644
--- a/requirements.tensorflow.txt
+++ b/requirements.tensorflow.txt
@@ -1,3 +1,3 @@
 # tensorflow==2.10.1  # https://github.com/talmolab/sleap/issues/1721
 # tensorflow==2.7.0 # 2.7.0 worked in the past
-tensorflow==2.9.2 # Trying to match the version of tensorflow-macos
\ No newline at end of file
+tensorflow==2.9.0 # Trying to match the version of tensorflow-macos
\ No newline at end of file

From dafb8a044daf95a7a9c7bf679da1c56f795d2dd6 Mon Sep 17 00:00:00 2001
From: Elizabeth Berrigan <berri104@gmail.com>
Date: Mon, 15 Jul 2024 16:48:18 -0700
Subject: [PATCH 08/56] add channel arg to upload

---
 .github/workflows/build_tensorflow.yml | 8 ++++----
 1 file changed, 4 insertions(+), 4 deletions(-)

diff --git a/.github/workflows/build_tensorflow.yml b/.github/workflows/build_tensorflow.yml
index 0b784c9..4101780 100644
--- a/.github/workflows/build_tensorflow.yml
+++ b/.github/workflows/build_tensorflow.yml
@@ -58,8 +58,8 @@ jobs:
       #     ANACONDA_LOGIN: ${{ secrets.ANACONDA_LOGIN }}
       #   shell: powershell
       #   run: |
-      #     anaconda login --username sleap --password "$env:ANACONDA_LOGIN"
-      #     anaconda -v upload "build.tensorflow\win-64\*.tar.bz2" --label dev
+      #     anaconda login --username sleap-deps --password "$env:ANACONDA_LOGIN"
+      #     anaconda -v upload "build.tensorflow\win-64\*.tar.bz2" --label dev --channel sleap-deps
       #     anaconda logout
       # - name: Upload to Anaconda (Ubuntu)
       #   if: matrix.os == 'ubuntu-22.04'
@@ -67,6 +67,6 @@ jobs:
       #     ANACONDA_LOGIN: ${{ secrets.ANACONDA_LOGIN }}
       #   shell: bash -l {0}
       #   run: |
-      #     anaconda login --username sleap --password "$ANACONDA_LOGIN"
-      #     anaconda -v upload build.tensorflow/linux-64/*.tar.bz2 --label dev
+      #     anaconda login --username sleap-deps --password "$ANACONDA_LOGIN"
+      #     anaconda -v upload build.tensorflow/linux-64/*.tar.bz2 --label dev --channel sleap-deps
       #     anaconda logout

From c21f9362ef8e67b5a4e5d7276e6991903bb1efbf Mon Sep 17 00:00:00 2001
From: Elizabeth Berrigan <berri104@gmail.com>
Date: Mon, 15 Jul 2024 17:03:05 -0700
Subject: [PATCH 09/56] try to enable long path support in the windows runner

---
 .github/workflows/build_tensorflow.yml | 7 +++++++
 1 file changed, 7 insertions(+)

diff --git a/.github/workflows/build_tensorflow.yml b/.github/workflows/build_tensorflow.yml
index 4101780..c925097 100644
--- a/.github/workflows/build_tensorflow.yml
+++ b/.github/workflows/build_tensorflow.yml
@@ -24,6 +24,13 @@ jobs:
       - name: Checkout
         uses: actions/checkout@v4
 
+      # Enable Windows Long Path Support
+      - name: Enable Windows Long Path Support
+        if: matrix.os == 'windows-2022'
+        run: |
+          reg add HKLM\SYSTEM\CurrentControlSet\Control\FileSystem /v LongPathsEnabled /t REG_DWORD /d 1 /f
+        shell: powershell
+
       # Setup Miniconda
       - name: Setup Miniconda
         # https://github.com/conda-incubator/setup-miniconda

From 0dba2f09b80d3a771e9cc3ac238c4b2b506c372c Mon Sep 17 00:00:00 2001
From: Elizabeth Berrigan <berri104@gmail.com>
Date: Mon, 15 Jul 2024 17:04:17 -0700
Subject: [PATCH 10/56] try 2.8.0

---
 requirements.tensorflow.txt | 3 ++-
 1 file changed, 2 insertions(+), 1 deletion(-)

diff --git a/requirements.tensorflow.txt b/requirements.tensorflow.txt
index 227e6b0..570ae7e 100644
--- a/requirements.tensorflow.txt
+++ b/requirements.tensorflow.txt
@@ -1,3 +1,4 @@
 # tensorflow==2.10.1  # https://github.com/talmolab/sleap/issues/1721
 # tensorflow==2.7.0 # 2.7.0 worked in the past
-tensorflow==2.9.0 # Trying to match the version of tensorflow-macos
\ No newline at end of file
+# tensorflow==2.9.0 # Trying to match the version of tensorflow-macos filename too long?
+tensorflow==2.8.0
\ No newline at end of file

From 1d5356ee931b469698a6ca9f20015943fa35875c Mon Sep 17 00:00:00 2001
From: Elizabeth Berrigan <berri104@gmail.com>
Date: Mon, 15 Jul 2024 17:21:44 -0700
Subject: [PATCH 11/56] try different github action checkout version

---
 .github/workflows/build_tensorflow.yml | 2 +-
 1 file changed, 1 insertion(+), 1 deletion(-)

diff --git a/.github/workflows/build_tensorflow.yml b/.github/workflows/build_tensorflow.yml
index c925097..1b2567a 100644
--- a/.github/workflows/build_tensorflow.yml
+++ b/.github/workflows/build_tensorflow.yml
@@ -22,7 +22,7 @@ jobs:
     steps:
       # Checkout the repository
       - name: Checkout
-        uses: actions/checkout@v4
+        uses: actions/checkout@v3
 
       # Enable Windows Long Path Support
       - name: Enable Windows Long Path Support

From 8a4b53cf7c6a70a183530e1e52ae8e37ec6eea56 Mon Sep 17 00:00:00 2001
From: Elizabeth Berrigan <berri104@gmail.com>
Date: Mon, 15 Jul 2024 17:21:55 -0700
Subject: [PATCH 12/56] go back to 2.9.0

---
 requirements.tensorflow.txt | 2 +-
 1 file changed, 1 insertion(+), 1 deletion(-)

diff --git a/requirements.tensorflow.txt b/requirements.tensorflow.txt
index 570ae7e..8064766 100644
--- a/requirements.tensorflow.txt
+++ b/requirements.tensorflow.txt
@@ -1,4 +1,4 @@
 # tensorflow==2.10.1  # https://github.com/talmolab/sleap/issues/1721
 # tensorflow==2.7.0 # 2.7.0 worked in the past
 # tensorflow==2.9.0 # Trying to match the version of tensorflow-macos filename too long?
-tensorflow==2.8.0
\ No newline at end of file
+tensorflow==2.9.0
\ No newline at end of file

From 2c01956837e6b10289c9d4d204eac24b0b1754ef Mon Sep 17 00:00:00 2001
From: Elizabeth Berrigan <berri104@gmail.com>
Date: Mon, 15 Jul 2024 20:12:39 -0700
Subject: [PATCH 13/56] Try shorter env name

---
 .github/workflows/build_tensorflow.yml | 4 ++--
 environment.tensorflow.yml             | 4 +---
 2 files changed, 3 insertions(+), 5 deletions(-)

diff --git a/.github/workflows/build_tensorflow.yml b/.github/workflows/build_tensorflow.yml
index 1b2567a..c3c25d3 100644
--- a/.github/workflows/build_tensorflow.yml
+++ b/.github/workflows/build_tensorflow.yml
@@ -38,7 +38,7 @@ jobs:
         with:
           python-version: "3.10"
           environment-file: environment.tensorflow.yml
-          activate-environment: build_tensorflow
+          activate-environment: tf
       - name: Print environment info
         shell: bash -l {0}
         run: |
@@ -50,7 +50,7 @@ jobs:
         if: matrix.os == 'windows-2022'
         shell: powershell
         run: |
-          conda activate build_tensorflow
+          conda activate tf
           conda build .conda.tensorflow --output-folder build.tensorflow -c conda-forge
       - name: Build conda package (Ubuntu)
         if: matrix.os == 'ubuntu-22.04'
diff --git a/environment.tensorflow.yml b/environment.tensorflow.yml
index d0e8145..c2a03ea 100644
--- a/environment.tensorflow.yml
+++ b/environment.tensorflow.yml
@@ -1,4 +1,4 @@
-name: build_tensorflow
+name: tf
 
 channels:
   - conda-forge
@@ -10,5 +10,3 @@ dependencies:
 - anaconda-client
 - conda-verify
 - pip
-
-- pip:
\ No newline at end of file

From 5b5e77001a6f1a31a1850bc601986d4c7ce13c28 Mon Sep 17 00:00:00 2001
From: Elizabeth Berrigan <berri104@gmail.com>
Date: Tue, 16 Jul 2024 10:43:11 -0700
Subject: [PATCH 14/56] enabling windows long path does not work locally or on
 the runner

---
 .github/workflows/build_tensorflow.yml | 14 +++++++-------
 1 file changed, 7 insertions(+), 7 deletions(-)

diff --git a/.github/workflows/build_tensorflow.yml b/.github/workflows/build_tensorflow.yml
index c3c25d3..2182b18 100644
--- a/.github/workflows/build_tensorflow.yml
+++ b/.github/workflows/build_tensorflow.yml
@@ -22,14 +22,14 @@ jobs:
     steps:
       # Checkout the repository
       - name: Checkout
-        uses: actions/checkout@v3
+        uses: actions/checkout@v4
 
-      # Enable Windows Long Path Support
-      - name: Enable Windows Long Path Support
-        if: matrix.os == 'windows-2022'
-        run: |
-          reg add HKLM\SYSTEM\CurrentControlSet\Control\FileSystem /v LongPathsEnabled /t REG_DWORD /d 1 /f
-        shell: powershell
+      # # Enable Windows Long Path Support
+      # - name: Enable Windows Long Path Support
+      #   if: matrix.os == 'windows-2022'
+      #   run: |
+      #     reg add HKLM\SYSTEM\CurrentControlSet\Control\FileSystem /v LongPathsEnabled /t REG_DWORD /d 1 /f
+      #   shell: powershell
 
       # Setup Miniconda
       - name: Setup Miniconda

From 7ed35d2d2cdfd4e5c3b8376be865b0ce53c45dfd Mon Sep 17 00:00:00 2001
From: Elizabeth Berrigan <berri104@gmail.com>
Date: Tue, 16 Jul 2024 10:43:39 -0700
Subject: [PATCH 15/56] try to shorten path using substitution

---
 .github/workflows/build_tensorflow.yml | 4 ++--
 1 file changed, 2 insertions(+), 2 deletions(-)

diff --git a/.github/workflows/build_tensorflow.yml b/.github/workflows/build_tensorflow.yml
index 2182b18..8f8c208 100644
--- a/.github/workflows/build_tensorflow.yml
+++ b/.github/workflows/build_tensorflow.yml
@@ -50,8 +50,8 @@ jobs:
         if: matrix.os == 'windows-2022'
         shell: powershell
         run: |
-          conda activate tf
-          conda build .conda.tensorflow --output-folder build.tensorflow -c conda-forge
+          subst X $PWD 
+          conda build X\.conda.tensorflow --output-folder build.tensorflow -c conda-forge
       - name: Build conda package (Ubuntu)
         if: matrix.os == 'ubuntu-22.04'
         shell: bash -l {0}

From 4b3ac3ecfe459b5f290fb780a048a307500c230e Mon Sep 17 00:00:00 2001
From: Elizabeth Berrigan <berri104@gmail.com>
Date: Tue, 16 Jul 2024 10:47:42 -0700
Subject: [PATCH 16/56] need drive letter

---
 .github/workflows/build_tensorflow.yml | 4 ++--
 1 file changed, 2 insertions(+), 2 deletions(-)

diff --git a/.github/workflows/build_tensorflow.yml b/.github/workflows/build_tensorflow.yml
index 8f8c208..e8901c7 100644
--- a/.github/workflows/build_tensorflow.yml
+++ b/.github/workflows/build_tensorflow.yml
@@ -50,8 +50,8 @@ jobs:
         if: matrix.os == 'windows-2022'
         shell: powershell
         run: |
-          subst X $PWD 
-          conda build X\.conda.tensorflow --output-folder build.tensorflow -c conda-forge
+          subst X: $PWD 
+          conda build X:\.conda.tensorflow --output-folder build.tensorflow -c conda-forge
       - name: Build conda package (Ubuntu)
         if: matrix.os == 'ubuntu-22.04'
         shell: bash -l {0}

From ba73c997707ba858b53e18101b11701e1d580643 Mon Sep 17 00:00:00 2001
From: Elizabeth Berrigan <berri104@gmail.com>
Date: Tue, 16 Jul 2024 11:14:25 -0700
Subject: [PATCH 17/56] create shortened link on windows

---
 .github/workflows/build_tensorflow.yml | 10 +++++++++-
 1 file changed, 9 insertions(+), 1 deletion(-)

diff --git a/.github/workflows/build_tensorflow.yml b/.github/workflows/build_tensorflow.yml
index e8901c7..cf38f81 100644
--- a/.github/workflows/build_tensorflow.yml
+++ b/.github/workflows/build_tensorflow.yml
@@ -45,13 +45,21 @@ jobs:
           which python
           conda info
 
+      # Create a shortened link on Windows
+      - name: Create shortened link (Windows)
+        if: matrix.os == 'windows-2022'
+        shell: powershell
+        run: |
+          New-Item -ItemType Directory -Force -Path C:\c
+          robocopy $PWD C:\c /E /NFL /NDL /NJH /NJS /NC /NS /NP
+
       # Build conda package
       - name: Build conda package (Windows)
         if: matrix.os == 'windows-2022'
         shell: powershell
         run: |
           subst X: $PWD 
-          conda build X:\.conda.tensorflow --output-folder build.tensorflow -c conda-forge
+          conda build C:\c\.conda.tensorflow --output-folder C:\c\build.tensorflow -c conda-forge
       - name: Build conda package (Ubuntu)
         if: matrix.os == 'ubuntu-22.04'
         shell: bash -l {0}

From 439d633b5b9eabb13632d629f1e0bc172808c28e Mon Sep 17 00:00:00 2001
From: Elizabeth Berrigan <berri104@gmail.com>
Date: Tue, 16 Jul 2024 11:21:38 -0700
Subject: [PATCH 18/56] try substitution for input and output

---
 .github/workflows/build_tensorflow.yml | 16 ++++++++--------
 1 file changed, 8 insertions(+), 8 deletions(-)

diff --git a/.github/workflows/build_tensorflow.yml b/.github/workflows/build_tensorflow.yml
index cf38f81..28367fa 100644
--- a/.github/workflows/build_tensorflow.yml
+++ b/.github/workflows/build_tensorflow.yml
@@ -45,13 +45,13 @@ jobs:
           which python
           conda info
 
-      # Create a shortened link on Windows
-      - name: Create shortened link (Windows)
-        if: matrix.os == 'windows-2022'
-        shell: powershell
-        run: |
-          New-Item -ItemType Directory -Force -Path C:\c
-          robocopy $PWD C:\c /E /NFL /NDL /NJH /NJS /NC /NS /NP
+      # # Create a shortened link on Windows
+      # - name: Create shortened link (Windows)
+      #   if: matrix.os == 'windows-2022'
+      #   shell: powershell
+      #   run: |
+      #     New-Item -ItemType Directory -Force -Path C:\c
+      #     robocopy $PWD C:\c /E /NFL /NDL /NJH /NJS /NC /NS /NP
 
       # Build conda package
       - name: Build conda package (Windows)
@@ -59,7 +59,7 @@ jobs:
         shell: powershell
         run: |
           subst X: $PWD 
-          conda build C:\c\.conda.tensorflow --output-folder C:\c\build.tensorflow -c conda-forge
+          conda build X:\.conda.tensorflow --output-folder X:\build.tensorflow -c conda-forge
       - name: Build conda package (Ubuntu)
         if: matrix.os == 'ubuntu-22.04'
         shell: bash -l {0}

From 7fd0f6a4b2daf213cd7773212b62c3654dfed29f Mon Sep 17 00:00:00 2001
From: Elizabeth Berrigan <berri104@gmail.com>
Date: Tue, 16 Jul 2024 11:31:09 -0700
Subject: [PATCH 19/56] tf 2.9.2

---
 requirements.tensorflow.txt | 2 +-
 1 file changed, 1 insertion(+), 1 deletion(-)

diff --git a/requirements.tensorflow.txt b/requirements.tensorflow.txt
index 8064766..eeb92e4 100644
--- a/requirements.tensorflow.txt
+++ b/requirements.tensorflow.txt
@@ -1,4 +1,4 @@
 # tensorflow==2.10.1  # https://github.com/talmolab/sleap/issues/1721
 # tensorflow==2.7.0 # 2.7.0 worked in the past
 # tensorflow==2.9.0 # Trying to match the version of tensorflow-macos filename too long?
-tensorflow==2.9.0
\ No newline at end of file
+tensorflow==2.9.2 # 2.9.2 is the latest version in the 2.9 series
\ No newline at end of file

From 077a6c5ebcc65f65b808cfb30503b56feb2cd832 Mon Sep 17 00:00:00 2001
From: Elizabeth Berrigan <berri104@gmail.com>
Date: Tue, 16 Jul 2024 11:48:05 -0700
Subject: [PATCH 20/56] try to shorten environment path with `CONDA_PREFIX`

---
 .github/workflows/build_tensorflow.yml | 31 ++++++++++++++++----------
 1 file changed, 19 insertions(+), 12 deletions(-)

diff --git a/.github/workflows/build_tensorflow.yml b/.github/workflows/build_tensorflow.yml
index 28367fa..952fb95 100644
--- a/.github/workflows/build_tensorflow.yml
+++ b/.github/workflows/build_tensorflow.yml
@@ -31,35 +31,42 @@ jobs:
       #     reg add HKLM\SYSTEM\CurrentControlSet\Control\FileSystem /v LongPathsEnabled /t REG_DWORD /d 1 /f
       #   shell: powershell
 
+      # Set CONDA_PREFIX on Windows to a shorter path
+      - name: Set CONDA_PREFIX (Windows)
+        if: matrix.os == 'windows-2022'
+        shell: powershell
+        run: |
+          New-Item -ItemType Directory -Force -Path C:\c
+        env:
+          CONDA_PREFIX: C:\c\tf
+
       # Setup Miniconda
       - name: Setup Miniconda
-        # https://github.com/conda-incubator/setup-miniconda
         uses: conda-incubator/setup-miniconda@v3.0.3
         with:
           python-version: "3.10"
           environment-file: environment.tensorflow.yml
           activate-environment: tf
+        env:
+          CONDA_PREFIX: C:\c\tf
+
       - name: Print environment info
         shell: bash -l {0}
         run: |
           which python
           conda info
+        env:
+          CONDA_PREFIX: C:\c\tf
 
-      # # Create a shortened link on Windows
-      # - name: Create shortened link (Windows)
-      #   if: matrix.os == 'windows-2022'
-      #   shell: powershell
-      #   run: |
-      #     New-Item -ItemType Directory -Force -Path C:\c
-      #     robocopy $PWD C:\c /E /NFL /NDL /NJH /NJS /NC /NS /NP
-
-      # Build conda package
+      # Build conda package (Windows)
       - name: Build conda package (Windows)
         if: matrix.os == 'windows-2022'
         shell: powershell
         run: |
-          subst X: $PWD 
-          conda build X:\.conda.tensorflow --output-folder X:\build.tensorflow -c conda-forge
+          conda build .conda.tensorflow --output-folder C:\c\build.tensorflow -c conda-forge
+        env:
+          CONDA_PREFIX: C:\c\envs\tf
+      # Build conda package (Ubuntu)
       - name: Build conda package (Ubuntu)
         if: matrix.os == 'ubuntu-22.04'
         shell: bash -l {0}

From f64be4a88ed339fd7f9ac51948ce5d670f82a0b6 Mon Sep 17 00:00:00 2001
From: Elizabeth Berrigan <berri104@gmail.com>
Date: Tue, 16 Jul 2024 11:58:04 -0700
Subject: [PATCH 21/56] correct conda prefix

---
 .github/workflows/build_tensorflow.yml | 2 +-
 1 file changed, 1 insertion(+), 1 deletion(-)

diff --git a/.github/workflows/build_tensorflow.yml b/.github/workflows/build_tensorflow.yml
index 952fb95..7fb9b33 100644
--- a/.github/workflows/build_tensorflow.yml
+++ b/.github/workflows/build_tensorflow.yml
@@ -65,7 +65,7 @@ jobs:
         run: |
           conda build .conda.tensorflow --output-folder C:\c\build.tensorflow -c conda-forge
         env:
-          CONDA_PREFIX: C:\c\envs\tf
+          CONDA_PREFIX: C:\c\tf
       # Build conda package (Ubuntu)
       - name: Build conda package (Ubuntu)
         if: matrix.os == 'ubuntu-22.04'

From 09c2ef676fb23ab1008b60fce6366c4ceb567880 Mon Sep 17 00:00:00 2001
From: Elizabeth Berrigan <berri104@gmail.com>
Date: Tue, 16 Jul 2024 12:01:56 -0700
Subject: [PATCH 22/56] debug build

---
 .github/workflows/build_tensorflow.yml | 2 +-
 1 file changed, 1 insertion(+), 1 deletion(-)

diff --git a/.github/workflows/build_tensorflow.yml b/.github/workflows/build_tensorflow.yml
index 7fb9b33..2f4cc94 100644
--- a/.github/workflows/build_tensorflow.yml
+++ b/.github/workflows/build_tensorflow.yml
@@ -63,7 +63,7 @@ jobs:
         if: matrix.os == 'windows-2022'
         shell: powershell
         run: |
-          conda build .conda.tensorflow --output-folder C:\c\build.tensorflow -c conda-forge
+          conda build --debug .conda.tensorflow --output-folder C:\c\build.tensorflow -c conda-forge
         env:
           CONDA_PREFIX: C:\c\tf
       # Build conda package (Ubuntu)

From ce6f90b7dcf622b81712b46bf5a81090a16d7b4a Mon Sep 17 00:00:00 2001
From: Elizabeth Berrigan <berri104@gmail.com>
Date: Tue, 16 Jul 2024 12:05:32 -0700
Subject: [PATCH 23/56] add prefix to build command

---
 .github/workflows/build_tensorflow.yml | 2 +-
 1 file changed, 1 insertion(+), 1 deletion(-)

diff --git a/.github/workflows/build_tensorflow.yml b/.github/workflows/build_tensorflow.yml
index 2f4cc94..783d0e5 100644
--- a/.github/workflows/build_tensorflow.yml
+++ b/.github/workflows/build_tensorflow.yml
@@ -63,7 +63,7 @@ jobs:
         if: matrix.os == 'windows-2022'
         shell: powershell
         run: |
-          conda build --debug .conda.tensorflow --output-folder C:\c\build.tensorflow -c conda-forge
+          conda build --debug .conda.tensorflow --output-folder C:\c\build.tensorflow -c conda-forge -p C:\c\tf
         env:
           CONDA_PREFIX: C:\c\tf
       # Build conda package (Ubuntu)

From 4cf6d976a1260cc76994a84de9e4d8b8871f5cd9 Mon Sep 17 00:00:00 2001
From: Elizabeth Berrigan <berri104@gmail.com>
Date: Tue, 16 Jul 2024 12:14:23 -0700
Subject: [PATCH 24/56] try to config environment path

---
 .github/workflows/build_tensorflow.yml | 3 ++-
 1 file changed, 2 insertions(+), 1 deletion(-)

diff --git a/.github/workflows/build_tensorflow.yml b/.github/workflows/build_tensorflow.yml
index 783d0e5..6b3d8b5 100644
--- a/.github/workflows/build_tensorflow.yml
+++ b/.github/workflows/build_tensorflow.yml
@@ -37,6 +37,7 @@ jobs:
         shell: powershell
         run: |
           New-Item -ItemType Directory -Force -Path C:\c
+          conda config --set envs_dirs "C:\c\envs"
         env:
           CONDA_PREFIX: C:\c\tf
 
@@ -63,7 +64,7 @@ jobs:
         if: matrix.os == 'windows-2022'
         shell: powershell
         run: |
-          conda build --debug .conda.tensorflow --output-folder C:\c\build.tensorflow -c conda-forge -p C:\c\tf
+          conda build --debug .conda.tensorflow --output-folder C:\c\build.tensorflow -c conda-forge
         env:
           CONDA_PREFIX: C:\c\tf
       # Build conda package (Ubuntu)

From f754b204d65afeee18536570b7b41bab5339f9ec Mon Sep 17 00:00:00 2001
From: Elizabeth Berrigan <berri104@gmail.com>
Date: Tue, 16 Jul 2024 12:28:01 -0700
Subject: [PATCH 25/56] setup-miniconda supports paths as environment names

---
 .github/workflows/build_tensorflow.yml | 17 +++++------------
 1 file changed, 5 insertions(+), 12 deletions(-)

diff --git a/.github/workflows/build_tensorflow.yml b/.github/workflows/build_tensorflow.yml
index 6b3d8b5..29e1c0e 100644
--- a/.github/workflows/build_tensorflow.yml
+++ b/.github/workflows/build_tensorflow.yml
@@ -31,15 +31,12 @@ jobs:
       #     reg add HKLM\SYSTEM\CurrentControlSet\Control\FileSystem /v LongPathsEnabled /t REG_DWORD /d 1 /f
       #   shell: powershell
 
-      # Set CONDA_PREFIX on Windows to a shorter path
-      - name: Set CONDA_PREFIX (Windows)
+      # Make conda prefix directory (Windows)
+      - name: Make conda prefix directory (Windows)
         if: matrix.os == 'windows-2022'
         shell: powershell
         run: |
           New-Item -ItemType Directory -Force -Path C:\c
-          conda config --set envs_dirs "C:\c\envs"
-        env:
-          CONDA_PREFIX: C:\c\tf
 
       # Setup Miniconda
       - name: Setup Miniconda
@@ -47,17 +44,14 @@ jobs:
         with:
           python-version: "3.10"
           environment-file: environment.tensorflow.yml
-          activate-environment: tf
-        env:
-          CONDA_PREFIX: C:\c\tf
+          activate-environment: C:\c\tf
 
       - name: Print environment info
         shell: bash -l {0}
         run: |
           which python
           conda info
-        env:
-          CONDA_PREFIX: C:\c\tf
+          conda list
 
       # Build conda package (Windows)
       - name: Build conda package (Windows)
@@ -65,8 +59,7 @@ jobs:
         shell: powershell
         run: |
           conda build --debug .conda.tensorflow --output-folder C:\c\build.tensorflow -c conda-forge
-        env:
-          CONDA_PREFIX: C:\c\tf
+
       # Build conda package (Ubuntu)
       - name: Build conda package (Ubuntu)
         if: matrix.os == 'ubuntu-22.04'

From fe8cc0278c1f8351e4166965d1fe1c08eabba36b Mon Sep 17 00:00:00 2001
From: Elizabeth Berrigan <berri104@gmail.com>
Date: Tue, 16 Jul 2024 12:53:34 -0700
Subject: [PATCH 26/56] fix ubuntu environment path

---
 .github/workflows/build_tensorflow.yml | 12 ++++++++++--
 1 file changed, 10 insertions(+), 2 deletions(-)

diff --git a/.github/workflows/build_tensorflow.yml b/.github/workflows/build_tensorflow.yml
index 29e1c0e..6805aed 100644
--- a/.github/workflows/build_tensorflow.yml
+++ b/.github/workflows/build_tensorflow.yml
@@ -39,13 +39,21 @@ jobs:
           New-Item -ItemType Directory -Force -Path C:\c
 
       # Setup Miniconda
-      - name: Setup Miniconda
+      # https://github.com/conda-incubator/setup-miniconda?tab=readme-ov-file#use-a-different-environment-name-or-path
+      - name: Setup Miniconda (Windows)
         uses: conda-incubator/setup-miniconda@v3.0.3
         with:
           python-version: "3.10"
           environment-file: environment.tensorflow.yml
           activate-environment: C:\c\tf
 
+      - name: Setup Miniconda (Ubuntu)
+        uses: conda-incubator/setup-miniconda@v3.0.3
+        with:
+          python-version: "3.10"
+          environment-file: environment.tensorflow.yml
+          activate-environment: tf
+
       - name: Print environment info
         shell: bash -l {0}
         run: |
@@ -65,7 +73,7 @@ jobs:
         if: matrix.os == 'ubuntu-22.04'
         shell: bash -l {0}
         run: |
-          conda build .conda.tensorflow --output-folder build.tensorflow -c conda-forge
+          conda build --debug .conda.tensorflow --output-folder build.tensorflow -c conda-forge
 
       # # Upload conda package
       # - name: Upload to Anaconda (Windows)

From 902e34a78d1aec2d72cf571d82516e2aead0eac0 Mon Sep 17 00:00:00 2001
From: Elizabeth Berrigan <berri104@gmail.com>
Date: Tue, 16 Jul 2024 13:08:16 -0700
Subject: [PATCH 27/56] fix version and try to test import

---
 .conda.tensorflow/meta.yaml | 20 ++++++++++----------
 1 file changed, 10 insertions(+), 10 deletions(-)

diff --git a/.conda.tensorflow/meta.yaml b/.conda.tensorflow/meta.yaml
index 91b6970..a538eaf 100644
--- a/.conda.tensorflow/meta.yaml
+++ b/.conda.tensorflow/meta.yaml
@@ -2,7 +2,7 @@
 
 package:
   name: tensorflow
-  version: 2.9.0a0
+  version: 2.9.2a0
 
 about:
   home: https://tensorflow.org
@@ -26,12 +26,12 @@ requirements:
     - python>=3.10.0,<3.11.0 # Trying python 3.10
     - numpy
     - h5py
-    - protobuf # 3.20.3 is what pip pulls in
-    - certifi # 2024.2.28 is what pip pulls in
-    - importlib-metadata # 6.7.0 is what pip pulls in
-    - six # 1.16.0 is what pip pulls in
-    - typing-extensions # 4.7.1 is what pip pulls in
-    - zipp # 3.15.0 is what pip pulls in
+    - protobuf
+    - certifi
+    - importlib-metadata
+    - six
+    - typing-extensions
+    - zipp
     - pip
 
   run:
@@ -46,6 +46,6 @@ requirements:
     - zipp
     - pip
 
-# test:
-#   imports:
-#     - tensorflow
\ No newline at end of file
+test:
+  imports:
+    - tensorflow
\ No newline at end of file

From 9783bd313adcc5c1fd318992bfdb472b7f11571f Mon Sep 17 00:00:00 2001
From: Elizabeth Berrigan <berri104@gmail.com>
Date: Tue, 16 Jul 2024 13:15:17 -0700
Subject: [PATCH 28/56] setup Miniconda depends on os

---
 .github/workflows/build_tensorflow.yml | 2 ++
 1 file changed, 2 insertions(+)

diff --git a/.github/workflows/build_tensorflow.yml b/.github/workflows/build_tensorflow.yml
index 6805aed..12dd92f 100644
--- a/.github/workflows/build_tensorflow.yml
+++ b/.github/workflows/build_tensorflow.yml
@@ -41,6 +41,7 @@ jobs:
       # Setup Miniconda
       # https://github.com/conda-incubator/setup-miniconda?tab=readme-ov-file#use-a-different-environment-name-or-path
       - name: Setup Miniconda (Windows)
+        if: matrix.os == 'windows-2022'
         uses: conda-incubator/setup-miniconda@v3.0.3
         with:
           python-version: "3.10"
@@ -48,6 +49,7 @@ jobs:
           activate-environment: C:\c\tf
 
       - name: Setup Miniconda (Ubuntu)
+        if: matrix.os == 'ubuntu-22.04'
         uses: conda-incubator/setup-miniconda@v3.0.3
         with:
           python-version: "3.10"

From 58274a06c1522fa56cd3ca13c8c698e50ac34299 Mon Sep 17 00:00:00 2001
From: Elizabeth Berrigan <berri104@gmail.com>
Date: Tue, 16 Jul 2024 14:57:44 -0700
Subject: [PATCH 29/56] try to upload using token

---
 .github/workflows/build_tensorflow.yml | 38 +++++++++++++-------------
 1 file changed, 19 insertions(+), 19 deletions(-)

diff --git a/.github/workflows/build_tensorflow.yml b/.github/workflows/build_tensorflow.yml
index 12dd92f..0a789ff 100644
--- a/.github/workflows/build_tensorflow.yml
+++ b/.github/workflows/build_tensorflow.yml
@@ -77,22 +77,22 @@ jobs:
         run: |
           conda build --debug .conda.tensorflow --output-folder build.tensorflow -c conda-forge
 
-      # # Upload conda package
-      # - name: Upload to Anaconda (Windows)
-      #   if: matrix.os == 'windows-2022'
-      #   env:
-      #     ANACONDA_LOGIN: ${{ secrets.ANACONDA_LOGIN }}
-      #   shell: powershell
-      #   run: |
-      #     anaconda login --username sleap-deps --password "$env:ANACONDA_LOGIN"
-      #     anaconda -v upload "build.tensorflow\win-64\*.tar.bz2" --label dev --channel sleap-deps
-      #     anaconda logout
-      # - name: Upload to Anaconda (Ubuntu)
-      #   if: matrix.os == 'ubuntu-22.04'
-      #   env:
-      #     ANACONDA_LOGIN: ${{ secrets.ANACONDA_LOGIN }}
-      #   shell: bash -l {0}
-      #   run: |
-      #     anaconda login --username sleap-deps --password "$ANACONDA_LOGIN"
-      #     anaconda -v upload build.tensorflow/linux-64/*.tar.bz2 --label dev --channel sleap-deps
-      #     anaconda logout
+      # Upload conda package
+      - name: Upload to Anaconda (Windows)
+        if: matrix.os == 'windows-2022'
+        env:
+          ANACONDA_SLEAP_DEPS_TOKEN: ${{ secrets.ANACONDA_SLEAP_DEPS_TOKEN }}
+        shell: powershell
+        run: |
+          anaconda login --username sleap-deps --password "$env:ANACONDA_SLEAP_DEPS_TOKEN"
+          anaconda -v upload "build.tensorflow\win-64\*.tar.bz2" --label dev --user sleap-deps
+          anaconda logout
+      - name: Upload to Anaconda (Ubuntu)
+        if: matrix.os == 'ubuntu-22.04'
+        env:
+          ANACONDA_SLEAP_DEPS_TOKEN: ${{ secrets.ANACONDA_SLEAP_DEPS_TOKEN }}
+        shell: bash -l {0}
+        run: |
+          anaconda login --username sleap-deps --password "$ANACONDA_SLEAP_DEPS_TOKEN"
+          anaconda -v upload build.tensorflow/linux-64/*.tar.bz2 --label dev --user sleap-deps
+          anaconda logout

From 17e5220230a1617b7b6e82b2c0f9e0a886548f02 Mon Sep 17 00:00:00 2001
From: Elizabeth Berrigan <berri104@gmail.com>
Date: Tue, 16 Jul 2024 15:29:53 -0700
Subject: [PATCH 30/56] try to upload without a password

---
 .github/workflows/build_tensorflow.yml | 30 ++++++++++++++++++++------
 1 file changed, 24 insertions(+), 6 deletions(-)

diff --git a/.github/workflows/build_tensorflow.yml b/.github/workflows/build_tensorflow.yml
index 0a789ff..a16b380 100644
--- a/.github/workflows/build_tensorflow.yml
+++ b/.github/workflows/build_tensorflow.yml
@@ -77,22 +77,40 @@ jobs:
         run: |
           conda build --debug .conda.tensorflow --output-folder build.tensorflow -c conda-forge
 
-      # Upload conda package
+      # # Upload conda package
+      # - name: Upload to Anaconda (Windows)
+      #   if: matrix.os == 'windows-2022'
+      #   env:
+      #     ANACONDA_TOKEN: ${{ secrets.ANACONDA_SLEAP_DEPS_TOKEN }}
+      #   shell: powershell
+      #   run: |
+      #     anaconda login --username sleap-deps --password "$env:ANACONDA_TOKEN"
+      #     anaconda -v upload "build.tensorflow\win-64\*.tar.bz2" --label dev --user sleap-deps
+      #     anaconda logout
+      # - name: Upload to Anaconda (Ubuntu)
+      #   if: matrix.os == 'ubuntu-22.04'
+      #   env:
+      #     ANACONDA_TOKEN: ${{ secrets.ANACONDA_SLEAP_DEPS_TOKEN }}
+      #   shell: bash -l {0}
+      #   run: |
+      #     anaconda login --username sleap-deps --password "$ANACONDA_TOKEN"
+      #     anaconda -v upload build.tensorflow/linux-64/*.tar.bz2 --label dev --user sleap-deps
+      #     anaconda logout
+
+        # Upload conda package
       - name: Upload to Anaconda (Windows)
         if: matrix.os == 'windows-2022'
         env:
-          ANACONDA_SLEAP_DEPS_TOKEN: ${{ secrets.ANACONDA_SLEAP_DEPS_TOKEN }}
+          ANACONDA_TOKEN: ${{ secrets.ANACONDA_SLEAP_DEPS_TOKEN }}
         shell: powershell
         run: |
-          anaconda login --username sleap-deps --password "$env:ANACONDA_SLEAP_DEPS_TOKEN"
-          anaconda -v upload "build.tensorflow\win-64\*.tar.bz2" --label dev --user sleap-deps
+          anaconda -v upload "C:\c\build.tensorflow\win-64\*.tar.bz2" --label dev --user sleap-deps
           anaconda logout
       - name: Upload to Anaconda (Ubuntu)
         if: matrix.os == 'ubuntu-22.04'
         env:
-          ANACONDA_SLEAP_DEPS_TOKEN: ${{ secrets.ANACONDA_SLEAP_DEPS_TOKEN }}
+          ANACONDA_TOKEN: ${{ secrets.ANACONDA_SLEAP_DEPS_TOKEN }}
         shell: bash -l {0}
         run: |
-          anaconda login --username sleap-deps --password "$ANACONDA_SLEAP_DEPS_TOKEN"
           anaconda -v upload build.tensorflow/linux-64/*.tar.bz2 --label dev --user sleap-deps
           anaconda logout

From 8c1e17b78b689befeed333f18e5986c877349e68 Mon Sep 17 00:00:00 2001
From: Elizabeth Berrigan <berri104@gmail.com>
Date: Tue, 16 Jul 2024 15:34:45 -0700
Subject: [PATCH 31/56] `ANACONDA_API_TOKEN` may automatically authenticate

---
 .github/workflows/build_tensorflow.yml | 4 ++--
 1 file changed, 2 insertions(+), 2 deletions(-)

diff --git a/.github/workflows/build_tensorflow.yml b/.github/workflows/build_tensorflow.yml
index a16b380..22f008b 100644
--- a/.github/workflows/build_tensorflow.yml
+++ b/.github/workflows/build_tensorflow.yml
@@ -101,7 +101,7 @@ jobs:
       - name: Upload to Anaconda (Windows)
         if: matrix.os == 'windows-2022'
         env:
-          ANACONDA_TOKEN: ${{ secrets.ANACONDA_SLEAP_DEPS_TOKEN }}
+          ANACONDA_API_TOKEN: ${{ secrets.ANACONDA_SLEAP_DEPS_TOKEN }}
         shell: powershell
         run: |
           anaconda -v upload "C:\c\build.tensorflow\win-64\*.tar.bz2" --label dev --user sleap-deps
@@ -109,7 +109,7 @@ jobs:
       - name: Upload to Anaconda (Ubuntu)
         if: matrix.os == 'ubuntu-22.04'
         env:
-          ANACONDA_TOKEN: ${{ secrets.ANACONDA_SLEAP_DEPS_TOKEN }}
+          ANACONDA_API_TOKEN: ${{ secrets.ANACONDA_SLEAP_DEPS_TOKEN }}
         shell: bash -l {0}
         run: |
           anaconda -v upload build.tensorflow/linux-64/*.tar.bz2 --label dev --user sleap-deps

From 50f3871782e39c2267f564741153ba8ede4153f5 Mon Sep 17 00:00:00 2001
From: Elizabeth Berrigan <berri104@gmail.com>
Date: Tue, 16 Jul 2024 15:51:45 -0700
Subject: [PATCH 32/56] remove windows long path support that doesn't work

---
 .github/workflows/build_tensorflow.yml | 8 +-------
 1 file changed, 1 insertion(+), 7 deletions(-)

diff --git a/.github/workflows/build_tensorflow.yml b/.github/workflows/build_tensorflow.yml
index 22f008b..4326602 100644
--- a/.github/workflows/build_tensorflow.yml
+++ b/.github/workflows/build_tensorflow.yml
@@ -24,13 +24,6 @@ jobs:
       - name: Checkout
         uses: actions/checkout@v4
 
-      # # Enable Windows Long Path Support
-      # - name: Enable Windows Long Path Support
-      #   if: matrix.os == 'windows-2022'
-      #   run: |
-      #     reg add HKLM\SYSTEM\CurrentControlSet\Control\FileSystem /v LongPathsEnabled /t REG_DWORD /d 1 /f
-      #   shell: powershell
-
       # Make conda prefix directory (Windows)
       - name: Make conda prefix directory (Windows)
         if: matrix.os == 'windows-2022'
@@ -98,6 +91,7 @@ jobs:
       #     anaconda logout
 
         # Upload conda package
+        # https://github.com/anaconda/anaconda-client/issues/529
       - name: Upload to Anaconda (Windows)
         if: matrix.os == 'windows-2022'
         env:

From 6bdfba96ad4dfa1b682d6472d010009ae353565e Mon Sep 17 00:00:00 2001
From: roomrys <38435167+roomrys@users.noreply.github.com>
Date: Wed, 11 Sep 2024 15:34:17 -0700
Subject: [PATCH 33/56] Remove unnecessary code

---
 .conda.tensorflow/meta.yaml            |  4 ++--
 .github/workflows/build_tensorflow.yml | 26 ++------------------------
 2 files changed, 4 insertions(+), 26 deletions(-)

diff --git a/.conda.tensorflow/meta.yaml b/.conda.tensorflow/meta.yaml
index a538eaf..3c89985 100644
--- a/.conda.tensorflow/meta.yaml
+++ b/.conda.tensorflow/meta.yaml
@@ -23,7 +23,7 @@ requirements:
     - '{{ compiler("cxx") }}'
 
   host:
-    - python>=3.10.0,<3.11.0 # Trying python 3.10
+    - python>=3.10.0,<3.11.0
     - numpy
     - h5py
     - protobuf
@@ -35,7 +35,7 @@ requirements:
     - pip
 
   run:
-    - python>=3.10.0,<3.11.0 # Trying python 3.10
+    - python>=3.10.0,<3.11.0
     - numpy
     - h5py
     - protobuf
diff --git a/.github/workflows/build_tensorflow.yml b/.github/workflows/build_tensorflow.yml
index 4326602..804674c 100644
--- a/.github/workflows/build_tensorflow.yml
+++ b/.github/workflows/build_tensorflow.yml
@@ -5,6 +5,7 @@ on:
     branches:
       - main
       - elizabeth/add-windows-linux-tensorflow-conda-package
+      
     paths:
       - '.github/workflows/build_tensorflow.yml'
       - '.conda.tensorflow/**'
@@ -56,42 +57,19 @@ jobs:
           conda info
           conda list
 
-      # Build conda package (Windows)
       - name: Build conda package (Windows)
         if: matrix.os == 'windows-2022'
         shell: powershell
         run: |
           conda build --debug .conda.tensorflow --output-folder C:\c\build.tensorflow -c conda-forge
 
-      # Build conda package (Ubuntu)
       - name: Build conda package (Ubuntu)
         if: matrix.os == 'ubuntu-22.04'
         shell: bash -l {0}
         run: |
           conda build --debug .conda.tensorflow --output-folder build.tensorflow -c conda-forge
 
-      # # Upload conda package
-      # - name: Upload to Anaconda (Windows)
-      #   if: matrix.os == 'windows-2022'
-      #   env:
-      #     ANACONDA_TOKEN: ${{ secrets.ANACONDA_SLEAP_DEPS_TOKEN }}
-      #   shell: powershell
-      #   run: |
-      #     anaconda login --username sleap-deps --password "$env:ANACONDA_TOKEN"
-      #     anaconda -v upload "build.tensorflow\win-64\*.tar.bz2" --label dev --user sleap-deps
-      #     anaconda logout
-      # - name: Upload to Anaconda (Ubuntu)
-      #   if: matrix.os == 'ubuntu-22.04'
-      #   env:
-      #     ANACONDA_TOKEN: ${{ secrets.ANACONDA_SLEAP_DEPS_TOKEN }}
-      #   shell: bash -l {0}
-      #   run: |
-      #     anaconda login --username sleap-deps --password "$ANACONDA_TOKEN"
-      #     anaconda -v upload build.tensorflow/linux-64/*.tar.bz2 --label dev --user sleap-deps
-      #     anaconda logout
-
-        # Upload conda package
-        # https://github.com/anaconda/anaconda-client/issues/529
+      # https://github.com/anaconda/anaconda-client/issues/529
       - name: Upload to Anaconda (Windows)
         if: matrix.os == 'windows-2022'
         env:

From 99d1918c3e344f8cfdbb38a367c707bc13daf142 Mon Sep 17 00:00:00 2001
From: roomrys <38435167+roomrys@users.noreply.github.com>
Date: Wed, 11 Sep 2024 15:36:02 -0700
Subject: [PATCH 34/56] Use correct version number & reset build number

---
 .conda.tensorflow/meta.yaml            | 4 ++--
 .github/workflows/build_tensorflow.yml | 5 ++---
 2 files changed, 4 insertions(+), 5 deletions(-)

diff --git a/.conda.tensorflow/meta.yaml b/.conda.tensorflow/meta.yaml
index 3c89985..81818cf 100644
--- a/.conda.tensorflow/meta.yaml
+++ b/.conda.tensorflow/meta.yaml
@@ -2,7 +2,7 @@
 
 package:
   name: tensorflow
-  version: 2.9.2a0
+  version: 2.9.2
 
 about:
   home: https://tensorflow.org
@@ -12,7 +12,7 @@ about:
   For GPU support, install cudatoolkit 11.3.1 and cudnn 8.2.1 which are available as conda packages on the default channel.'
 
 build:
-  number: 4
+  number: 0
 
 source:
   path: ../
diff --git a/.github/workflows/build_tensorflow.yml b/.github/workflows/build_tensorflow.yml
index 804674c..d6b2ce6 100644
--- a/.github/workflows/build_tensorflow.yml
+++ b/.github/workflows/build_tensorflow.yml
@@ -5,7 +5,7 @@ on:
     branches:
       - main
       - elizabeth/add-windows-linux-tensorflow-conda-package
-      
+
     paths:
       - '.github/workflows/build_tensorflow.yml'
       - '.conda.tensorflow/**'
@@ -25,14 +25,12 @@ jobs:
       - name: Checkout
         uses: actions/checkout@v4
 
-      # Make conda prefix directory (Windows)
       - name: Make conda prefix directory (Windows)
         if: matrix.os == 'windows-2022'
         shell: powershell
         run: |
           New-Item -ItemType Directory -Force -Path C:\c
 
-      # Setup Miniconda
       # https://github.com/conda-incubator/setup-miniconda?tab=readme-ov-file#use-a-different-environment-name-or-path
       - name: Setup Miniconda (Windows)
         if: matrix.os == 'windows-2022'
@@ -78,6 +76,7 @@ jobs:
         run: |
           anaconda -v upload "C:\c\build.tensorflow\win-64\*.tar.bz2" --label dev --user sleap-deps
           anaconda logout
+
       - name: Upload to Anaconda (Ubuntu)
         if: matrix.os == 'ubuntu-22.04'
         env:

From 84c6d3221ddf2f2befe294566444b1285a8be683 Mon Sep 17 00:00:00 2001
From: roomrys <38435167+roomrys@users.noreply.github.com>
Date: Wed, 11 Sep 2024 16:01:39 -0700
Subject: [PATCH 35/56] Use anaconda password instead of token

---
 .github/workflows/build_tensorflow.yml | 4 ++--
 1 file changed, 2 insertions(+), 2 deletions(-)

diff --git a/.github/workflows/build_tensorflow.yml b/.github/workflows/build_tensorflow.yml
index aa968fa..c698d4b 100644
--- a/.github/workflows/build_tensorflow.yml
+++ b/.github/workflows/build_tensorflow.yml
@@ -73,7 +73,7 @@ jobs:
       - name: Upload to Anaconda (Windows)
         if: matrix.os == "windows-2022"
         env:
-          ANACONDA_API_TOKEN: ${{ secrets.ANACONDA_SLEAP_DEPS_TOKEN }}
+          ANACONDA_PASSWORD: ${{ secrets.ANACONDA_PASSWORD }}
         shell: powershell
         run: |
           anaconda login --username sleap-deps --password "$ANACONDA_PASSWORD"
@@ -83,7 +83,7 @@ jobs:
       - name: Upload to Anaconda (Ubuntu)
         if: matrix.os == "ubuntu-22.04"
         env:
-          ANACONDA_API_TOKEN: ${{ secrets.ANACONDA_SLEAP_DEPS_TOKEN }}
+          ANACONDA_PASSWORD: ${{ secrets.ANACONDA_PASSWORD }}
         shell: bash -l {0}
         run: |
           anaconda login --username sleap-deps --password "$ANACONDA_PASSWORD"

From 220ac77a75b153320ff44684972adf990ac3cf79 Mon Sep 17 00:00:00 2001
From: roomrys <38435167+roomrys@users.noreply.github.com>
Date: Wed, 11 Sep 2024 16:08:16 -0700
Subject: [PATCH 36/56] Use ' instaead of " in if statements

---
 .github/workflows/build_tensorflow.yml | 20 ++++++++++----------
 1 file changed, 10 insertions(+), 10 deletions(-)

diff --git a/.github/workflows/build_tensorflow.yml b/.github/workflows/build_tensorflow.yml
index c698d4b..61f2e45 100644
--- a/.github/workflows/build_tensorflow.yml
+++ b/.github/workflows/build_tensorflow.yml
@@ -21,21 +21,21 @@ jobs:
     strategy:
       fail-fast: false
       matrix:
-        os: ["ubuntu-22.04", "windows-2022", "macos-14"]
+        os: ['ubuntu-22.04', 'windows-2022', 'macos-14']
     steps:
       # Checkout the repository
       - name: Checkout
         uses: actions/checkout@v4
 
       - name: Make conda prefix directory (Windows)
-        if: matrix.os == "windows-2022"
+        if: matrix.os == 'windows-2022'
         shell: powershell
         run: |
           New-Item -ItemType Directory -Force -Path C:\c
 
       # https://github.com/conda-incubator/setup-miniconda?tab=readme-ov-file#use-a-different-environment-name-or-path
       - name: Setup Miniconda (Windows)
-        if: matrix.os == "windows-2022"
+        if: matrix.os == 'windows-2022'
         uses: conda-incubator/setup-miniconda@v3.0.3
         with:
           python-version: "3.10"
@@ -43,7 +43,7 @@ jobs:
           activate-environment: C:\c\tf
 
       - name: Setup Miniconda (not Windows)
-        if: matrix.os != "windows-2022"
+        if: matrix.os != 'windows-2022'
         uses: conda-incubator/setup-miniconda@v3.0.3
         with:
           python-version: "3.10"
@@ -58,20 +58,20 @@ jobs:
           conda list
 
       - name: Build conda package (Windows)
-        if: matrix.os == "windows-2022"
+        if: matrix.os == 'windows-2022'
         shell: powershell
         run: |
           conda build --debug .conda.tensorflow --output-folder C:\c\build.tensorflow -c conda-forge
 
       - name: Build conda package (Ubuntu)
-        if: matrix.os == "ubuntu-22.04"
+        if: matrix.os == 'ubuntu-22.04'
         shell: bash -l {0}
         run: |
           conda build --debug .conda.tensorflow --output-folder build.tensorflow -c conda-forge
 
       # https://github.com/anaconda/anaconda-client/issues/529
       - name: Upload to Anaconda (Windows)
-        if: matrix.os == "windows-2022"
+        if: matrix.os == 'windows-2022'
         env:
           ANACONDA_PASSWORD: ${{ secrets.ANACONDA_PASSWORD }}
         shell: powershell
@@ -81,7 +81,7 @@ jobs:
           anaconda logout
 
       - name: Upload to Anaconda (Ubuntu)
-        if: matrix.os == "ubuntu-22.04"
+        if: matrix.os == 'ubuntu-22.04'
         env:
           ANACONDA_PASSWORD: ${{ secrets.ANACONDA_PASSWORD }}
         shell: bash -l {0}
@@ -91,13 +91,13 @@ jobs:
           anaconda logout
 
       - name: Build conda package (MacOS)
-        if: matrix.os == "macos-14"
+        if: matrix.os == 'macos-14'
         shell: bash -l {0}
         run: |
           conda build --debug .conda.tensorflow_macos --output-folder build.tensorflow_macos -c conda-forge
 
       - name: Upload to Anaconda (MacOS)
-        if: matrix.os == "macos-14"
+        if: matrix.os == 'macos-14'
         env:
           ANACONDA_PASSWORD: ${{ secrets.ANACONDA_PASSWORD }}
         shell: bash -l {0}

From fb301badab9ddf78ddaad1a7d9aa31cf2be1921f Mon Sep 17 00:00:00 2001
From: roomrys <38435167+roomrys@users.noreply.github.com>
Date: Wed, 11 Sep 2024 16:14:58 -0700
Subject: [PATCH 37/56] Document manual win/linux pacakge testing

---
 README.md | 34 +++++++++++++++++++---------------
 1 file changed, 19 insertions(+), 15 deletions(-)

diff --git a/README.md b/README.md
index ae060ea..d02739c 100644
--- a/README.md
+++ b/README.md
@@ -7,28 +7,32 @@ There is a Github Actions workflow `build_tensorflow.yml` that uses Github runne
 
 1. Create the tensorflow build environment:
 
-```bash
-mamba env create -f environment.tensorflow.yml -n tf
-```
+    ```bash
+    mamba env create -f environment.tensorflow.yml -n tf
+    ```
 
 2. Activate the tensorflow build environment:
 
-```bash
-mamba activate tf
-```
+    ```bash
+    mamba activate tf
+    ```
 
 3. Build the tensorflow conda package:
 
-#### Mac
+    #### Windows or Linux
 
-```bash
-conda build --debug.conda.tensorflow_macos --output-folder build.tensorflow_macos -c conda-forge
-```
+    ```bash
+    conda build --debug .conda.tensorflow --output-folder build.tensorflow -c conda-forge
+    ```
 
-4. Test the conda package:
+    #### Mac
+
+    ```bash
+    conda build --debug .conda.tensorflow_macos --output-folder build.tensorflow -c conda-forge
+    ```
 
-#### Mac
+4. Test the conda package:
 
-```bash
-mamba create -n tf_macos -c ./build.tensorflow_macos -c conda-forge tensorflow
-```
+    ```bash
+    mamba create -n tf_build -c ./build.tensorflow -c conda-forge tensorflow
+    ```

From a872855e34f645344abc90c2df2d582ada1ad5d5 Mon Sep 17 00:00:00 2001
From: roomrys <lmaree@ucsd.edu>
Date: Wed, 11 Sep 2024 20:46:59 -0700
Subject: [PATCH 38/56] Consolidate workflow and separate build and upload jobs

---
 .github/workflows/build_tensorflow.yml | 127 ++++++++++++++-----------
 1 file changed, 73 insertions(+), 54 deletions(-)

diff --git a/.github/workflows/build_tensorflow.yml b/.github/workflows/build_tensorflow.yml
index 61f2e45..b7b1adb 100644
--- a/.github/workflows/build_tensorflow.yml
+++ b/.github/workflows/build_tensorflow.yml
@@ -14,36 +14,35 @@ on:
       - "requirements.tensorflow.txt"
       - "requirements.tensorflow_macos.txt"
 
+# If RUN_BUILD_JOB is set to true, then RUN_ID will be overwritten to the current run id
+env:
+  RUN_BUILD_JOB: true
+  RUN_ID: 10713717594 # Only used if RUN_BUILD_JOB is false (to dowload build artifact)
+
 jobs:
   build:
     name: Build package (${{ matrix.os }})
     runs-on: ${{ matrix.os }}
     strategy:
-      fail-fast: false
+      fail-fast: false # TODO(LM): Set to true
       matrix:
-        os: ['ubuntu-22.04', 'windows-2022', 'macos-14']
+        os: ["ubuntu-22.04", "windows-2022", "macos-14"]
+        include:
+          - os-folder: win-64
+          - build-folder: .conda.tensorflow
+          - os: "ubuntu-22.04"
+            os-folder: linux-64
+          - os: "macos-14"
+            os-folder: osx-arm64
+            build-folder: .conda.tensorflow_macos
     steps:
       # Checkout the repository
       - name: Checkout
+        if: env.RUN_BUILD_JOB == 'true'
         uses: actions/checkout@v4
 
-      - name: Make conda prefix directory (Windows)
-        if: matrix.os == 'windows-2022'
-        shell: powershell
-        run: |
-          New-Item -ItemType Directory -Force -Path C:\c
-
-      # https://github.com/conda-incubator/setup-miniconda?tab=readme-ov-file#use-a-different-environment-name-or-path
-      - name: Setup Miniconda (Windows)
-        if: matrix.os == 'windows-2022'
-        uses: conda-incubator/setup-miniconda@v3.0.3
-        with:
-          python-version: "3.10"
-          environment-file: environment.tensorflow.yml
-          activate-environment: C:\c\tf
-
-      - name: Setup Miniconda (not Windows)
-        if: matrix.os != 'windows-2022'
+      - name: Setup Miniconda
+        if: env.RUN_BUILD_JOB == 'true'
         uses: conda-incubator/setup-miniconda@v3.0.3
         with:
           python-version: "3.10"
@@ -51,57 +50,77 @@ jobs:
           activate-environment: tf
 
       - name: Print environment info
+        if: env.RUN_BUILD_JOB == 'true'
         shell: bash -l {0}
         run: |
           which python
           conda info
           conda list
 
-      - name: Build conda package (Windows)
-        if: matrix.os == 'windows-2022'
-        shell: powershell
-        run: |
-          conda build --debug .conda.tensorflow --output-folder C:\c\build.tensorflow -c conda-forge
-
-      - name: Build conda package (Ubuntu)
-        if: matrix.os == 'ubuntu-22.04'
+      - name: Build conda package
+        if: env.RUN_BUILD_JOB == 'true'
         shell: bash -l {0}
         run: |
-          conda build --debug .conda.tensorflow --output-folder build.tensorflow -c conda-forge
+          conda build --debug ${{ matrix.build-folder }} --output-folder build.tensorflow -c conda-forge
 
-      # https://github.com/anaconda/anaconda-client/issues/529
-      - name: Upload to Anaconda (Windows)
-        if: matrix.os == 'windows-2022'
-        env:
-          ANACONDA_PASSWORD: ${{ secrets.ANACONDA_PASSWORD }}
-        shell: powershell
-        run: |
-          anaconda login --username sleap-deps --password "$ANACONDA_PASSWORD"
-          anaconda -v upload "C:\c\build.tensorflow\win-64\*.tar.bz2" --label dev --user sleap-deps
-          anaconda logout
+      # Upload the build artifact incase anaconda upload fails
+      - name: Upload conda package artifact
+        if: env.RUN_BUILD_JOB == 'true'
+        uses: actions/upload-artifact@v4
+        with:
+          name: tensorflow-build-${{ matrix.os-folder }}
+          path: build.tensorflow # Upload entire build directory
+          retention-days: 1
 
-      - name: Upload to Anaconda (Ubuntu)
-        if: matrix.os == 'ubuntu-22.04'
-        env:
-          ANACONDA_PASSWORD: ${{ secrets.ANACONDA_PASSWORD }}
-        shell: bash -l {0}
-        run: |
-          anaconda login --username sleap-deps --password "$ANACONDA_PASSWORD"
-          anaconda -v upload build.tensorflow/linux-64/*.tar.bz2 --label dev --user sleap-deps
-          anaconda logout
+  upload:
+    name: Upload package (${{ matrix.os }})
+    runs-on: ${{ matrix.os }}
+    strategy:
+      fail-fast: false # TODO(LM): Set to true
+      matrix:
+        os: ["ubuntu-22.04", "windows-2022", "macos-14"]
+        include:
+          - os-folder: win-64
+          - os: "ubuntu-22.04"
+            os-folder: linux-64
+          - os: "macos-14"
+            os-folder: osx-arm64
 
-      - name: Build conda package (MacOS)
-        if: matrix.os == 'macos-14'
+    steps:
+      - name: Use current run id for conda package download
         shell: bash -l {0}
-        run: |
-          conda build --debug .conda.tensorflow_macos --output-folder build.tensorflow_macos -c conda-forge
+        if: env.RUN_BUILD_JOB == 'true'
+        run: echo "RUN_ID=${{ github.run_id }}" >> $GITHUB_ENV
+
+      # https://github.com/actions/download-artifact?tab=readme-ov-file#usage
+      - name: Download conda package artifact
+        uses: actions/download-artifact@v4
+        id: download
+        with:
+          name: sleap-build-${{ matrix.os-folder }}
+          path: build.tensorflow
+          run-id: ${{ env.RUN_ID }}
+          github-token: ${{ secrets.GITHUB_TOKEN }}
+
+      - name: Setup Python
+        uses: actions/setup-python@v5
+        with:
+          python-version: ${{ matrix.pyver }}
+
+      - name: Setup Miniconda
+        if: env.RUN_BUILD_JOB == 'true'
+        uses: conda-incubator/setup-miniconda@v3.0.3
+        with:
+          python-version: "3.10"
+          environment-file: environment.tensorflow.yml
+          activate-environment: tf
 
-      - name: Upload to Anaconda (MacOS)
-        if: matrix.os == 'macos-14'
+      - name: Upload to Anaconda
+        if: env.RUN_BUILD_JOB == 'true'
         env:
           ANACONDA_PASSWORD: ${{ secrets.ANACONDA_PASSWORD }}
         shell: bash -l {0}
         run: |
           anaconda login --username sleap-deps --password "$ANACONDA_PASSWORD"
-          anaconda -v upload build.tensorflow_macos/osx-arm64/*.tar.bz2 --label dev --user sleap-deps
+          anaconda -v upload build.tensorflow/${{ matrix.os-folder }}/*.tar.bz2 --label dev --user sleap-deps
           anaconda logout

From 40655b2f354c72cd334be93923947c4dbe0a894f Mon Sep 17 00:00:00 2001
From: roomrys <lmaree@ucsd.edu>
Date: Wed, 11 Sep 2024 20:48:38 -0700
Subject: [PATCH 39/56] Ensure build job runs before upload job

---
 .github/workflows/build_tensorflow.yml | 1 +
 1 file changed, 1 insertion(+)

diff --git a/.github/workflows/build_tensorflow.yml b/.github/workflows/build_tensorflow.yml
index b7b1adb..7089c9c 100644
--- a/.github/workflows/build_tensorflow.yml
+++ b/.github/workflows/build_tensorflow.yml
@@ -75,6 +75,7 @@ jobs:
   upload:
     name: Upload package (${{ matrix.os }})
     runs-on: ${{ matrix.os }}
+    needs: build
     strategy:
       fail-fast: false # TODO(LM): Set to true
       matrix:

From 72fb5bf0658dec33c6513e431b5e0ad1dbae995c Mon Sep 17 00:00:00 2001
From: roomrys <38435167+roomrys@users.noreply.github.com>
Date: Wed, 11 Sep 2024 21:15:53 -0700
Subject: [PATCH 40/56] Use powershell to build Windows packages

---
 .github/workflows/build_tensorflow.yml | 10 ++++++++--
 1 file changed, 8 insertions(+), 2 deletions(-)

diff --git a/.github/workflows/build_tensorflow.yml b/.github/workflows/build_tensorflow.yml
index 7089c9c..27e0d0b 100644
--- a/.github/workflows/build_tensorflow.yml
+++ b/.github/workflows/build_tensorflow.yml
@@ -57,8 +57,14 @@ jobs:
           conda info
           conda list
 
-      - name: Build conda package
-        if: env.RUN_BUILD_JOB == 'true'
+      - name: Build conda package (${{ matrix.os }})
+        if: (${{ runner.os }} == 'Windows' ) && (env.RUN_BUILD_JOB == 'true')
+        shell: powershell
+        run: |
+          conda build --debug ${{ matrix.build-folder }} --output-folder build.tensorflow -c conda-forge
+
+      - name: Build conda package (${{ matrix.os }})
+        if: (${{ runner.os }} != 'Windows' ) && (env.RUN_BUILD_JOB == 'true')
         shell: bash -l {0}
         run: |
           conda build --debug ${{ matrix.build-folder }} --output-folder build.tensorflow -c conda-forge

From 43164a5a2b160474bd6100b53eb0963faae73876 Mon Sep 17 00:00:00 2001
From: roomrys <38435167+roomrys@users.noreply.github.com>
Date: Wed, 11 Sep 2024 21:22:04 -0700
Subject: [PATCH 41/56] Do not use jinja templating in name

---
 .github/workflows/build_tensorflow.yml | 4 ++--
 1 file changed, 2 insertions(+), 2 deletions(-)

diff --git a/.github/workflows/build_tensorflow.yml b/.github/workflows/build_tensorflow.yml
index 27e0d0b..a447946 100644
--- a/.github/workflows/build_tensorflow.yml
+++ b/.github/workflows/build_tensorflow.yml
@@ -58,13 +58,13 @@ jobs:
           conda list
 
       - name: Build conda package (${{ matrix.os }})
-        if: (${{ runner.os }} == 'Windows' ) && (env.RUN_BUILD_JOB == 'true')
+        if: (runner.os == 'Windows') && (env.RUN_BUILD_JOB == 'true')
         shell: powershell
         run: |
           conda build --debug ${{ matrix.build-folder }} --output-folder build.tensorflow -c conda-forge
 
       - name: Build conda package (${{ matrix.os }})
-        if: (${{ runner.os }} != 'Windows' ) && (env.RUN_BUILD_JOB == 'true')
+        if: (runner.os != 'Windows') && (env.RUN_BUILD_JOB == 'true')
         shell: bash -l {0}
         run: |
           conda build --debug ${{ matrix.build-folder }} --output-folder build.tensorflow -c conda-forge

From 39b42752fc9d86154930b0339b2f8c009d3e870b Mon Sep 17 00:00:00 2001
From: roomrys <38435167+roomrys@users.noreply.github.com>
Date: Wed, 11 Sep 2024 22:12:11 -0700
Subject: [PATCH 42/56] Make conda prefix directory shorter again

---
 .github/workflows/build_tensorflow.yml | 33 ++++++++++++++------------
 1 file changed, 18 insertions(+), 15 deletions(-)

diff --git a/.github/workflows/build_tensorflow.yml b/.github/workflows/build_tensorflow.yml
index a447946..dfd251c 100644
--- a/.github/workflows/build_tensorflow.yml
+++ b/.github/workflows/build_tensorflow.yml
@@ -28,10 +28,13 @@ jobs:
       matrix:
         os: ["ubuntu-22.04", "windows-2022", "macos-14"]
         include:
-          - os-folder: win-64
+          - os-folder: linux-64
           - build-folder: .conda.tensorflow
-          - os: "ubuntu-22.04"
-            os-folder: linux-64
+          - os-shell: bash -l {0}
+          - os: "windows-2022"
+            os-folder: win-64
+            os-shell: powershell
+            env-prefix: C:\c\
           - os: "macos-14"
             os-folder: osx-arm64
             build-folder: .conda.tensorflow_macos
@@ -41,13 +44,19 @@ jobs:
         if: env.RUN_BUILD_JOB == 'true'
         uses: actions/checkout@v4
 
+      - name: Make conda prefix directory (Windows)
+        if: matrix.os == "windows-2022"
+        shell: powershell
+        run: |
+          New-Item -ItemType Directory -Force -Path ${{ matrix.env-prefix }}
+
       - name: Setup Miniconda
         if: env.RUN_BUILD_JOB == 'true'
         uses: conda-incubator/setup-miniconda@v3.0.3
         with:
           python-version: "3.10"
           environment-file: environment.tensorflow.yml
-          activate-environment: tf
+          activate-environment: ${{ matrix.env-prefix }}tf
 
       - name: Print environment info
         if: env.RUN_BUILD_JOB == 'true'
@@ -57,17 +66,11 @@ jobs:
           conda info
           conda list
 
-      - name: Build conda package (${{ matrix.os }})
-        if: (runner.os == 'Windows') && (env.RUN_BUILD_JOB == 'true')
-        shell: powershell
-        run: |
-          conda build --debug ${{ matrix.build-folder }} --output-folder build.tensorflow -c conda-forge
-
-      - name: Build conda package (${{ matrix.os }})
-        if: (runner.os != 'Windows') && (env.RUN_BUILD_JOB == 'true')
-        shell: bash -l {0}
+      - name: Build conda package
+        if: env.RUN_BUILD_JOB == 'true'
+        shell: matrix.os-shell
         run: |
-          conda build --debug ${{ matrix.build-folder }} --output-folder build.tensorflow -c conda-forge
+          conda build --debug ${{ matrix.build-folder }} --output-folder ${{ matrix.env-prefix }}build.tensorflow -c conda-forge
 
       # Upload the build artifact incase anaconda upload fails
       - name: Upload conda package artifact
@@ -75,7 +78,7 @@ jobs:
         uses: actions/upload-artifact@v4
         with:
           name: tensorflow-build-${{ matrix.os-folder }}
-          path: build.tensorflow # Upload entire build directory
+          path: ${{ matrix.env-prefix }}build.tensorflow # Upload entire build directory
           retention-days: 1
 
   upload:

From 57f42cbc1fab6568b7311da899d79b23e2db0641 Mon Sep 17 00:00:00 2001
From: roomrys <38435167+roomrys@users.noreply.github.com>
Date: Wed, 11 Sep 2024 22:14:31 -0700
Subject: [PATCH 43/56] Use ' not "

---
 .github/workflows/build_tensorflow.yml | 2 +-
 1 file changed, 1 insertion(+), 1 deletion(-)

diff --git a/.github/workflows/build_tensorflow.yml b/.github/workflows/build_tensorflow.yml
index dfd251c..3e199ff 100644
--- a/.github/workflows/build_tensorflow.yml
+++ b/.github/workflows/build_tensorflow.yml
@@ -45,7 +45,7 @@ jobs:
         uses: actions/checkout@v4
 
       - name: Make conda prefix directory (Windows)
-        if: matrix.os == "windows-2022"
+        if: matrix.os == 'windows-2022'
         shell: powershell
         run: |
           New-Item -ItemType Directory -Force -Path ${{ matrix.env-prefix }}

From 67c8e92539f07f0460d57a6f1bdb47b439f1c1ac Mon Sep 17 00:00:00 2001
From: roomrys <38435167+roomrys@users.noreply.github.com>
Date: Wed, 11 Sep 2024 22:17:57 -0700
Subject: [PATCH 44/56] Use jinja formatting for shell

---
 .github/workflows/build_tensorflow.yml | 2 +-
 1 file changed, 1 insertion(+), 1 deletion(-)

diff --git a/.github/workflows/build_tensorflow.yml b/.github/workflows/build_tensorflow.yml
index 3e199ff..a200651 100644
--- a/.github/workflows/build_tensorflow.yml
+++ b/.github/workflows/build_tensorflow.yml
@@ -68,7 +68,7 @@ jobs:
 
       - name: Build conda package
         if: env.RUN_BUILD_JOB == 'true'
-        shell: matrix.os-shell
+        shell: ${{ matrix.os-shell }}
         run: |
           conda build --debug ${{ matrix.build-folder }} --output-folder ${{ matrix.env-prefix }}build.tensorflow -c conda-forge
 

From 8e6b49b3c3027bb328262498d10e9a94d459f357 Mon Sep 17 00:00:00 2001
From: roomrys <38435167+roomrys@users.noreply.github.com>
Date: Wed, 11 Sep 2024 22:23:53 -0700
Subject: [PATCH 45/56] Split build into windows and not windows

---
 .github/workflows/build_tensorflow.yml | 12 ++++++++----
 1 file changed, 8 insertions(+), 4 deletions(-)

diff --git a/.github/workflows/build_tensorflow.yml b/.github/workflows/build_tensorflow.yml
index a200651..d1f53be 100644
--- a/.github/workflows/build_tensorflow.yml
+++ b/.github/workflows/build_tensorflow.yml
@@ -30,10 +30,8 @@ jobs:
         include:
           - os-folder: linux-64
           - build-folder: .conda.tensorflow
-          - os-shell: bash -l {0}
           - os: "windows-2022"
             os-folder: win-64
-            os-shell: powershell
             env-prefix: C:\c\
           - os: "macos-14"
             os-folder: osx-arm64
@@ -66,12 +64,18 @@ jobs:
           conda info
           conda list
 
-      - name: Build conda package
+      - name: Build conda package (Windows)
         if: env.RUN_BUILD_JOB == 'true'
-        shell: ${{ matrix.os-shell }}
+        shell: powershell
         run: |
           conda build --debug ${{ matrix.build-folder }} --output-folder ${{ matrix.env-prefix }}build.tensorflow -c conda-forge
 
+      - name: Build conda package (not Windows)
+        if: env.RUN_BUILD_JOB == 'true'
+        shell: bash -l {0}
+        run: |
+          conda build --debug ${{ matrix.build-folder }} --output-folder build.tensorflow -c conda-forge
+
       # Upload the build artifact incase anaconda upload fails
       - name: Upload conda package artifact
         if: env.RUN_BUILD_JOB == 'true'

From d01872e306fb078dbcb68d6b0ecaba9bfa249440 Mon Sep 17 00:00:00 2001
From: roomrys <38435167+roomrys@users.noreply.github.com>
Date: Wed, 11 Sep 2024 22:28:02 -0700
Subject: [PATCH 46/56] Add back check for runner in build conda step

---
 .github/workflows/build_tensorflow.yml | 4 ++--
 1 file changed, 2 insertions(+), 2 deletions(-)

diff --git a/.github/workflows/build_tensorflow.yml b/.github/workflows/build_tensorflow.yml
index d1f53be..37fa10e 100644
--- a/.github/workflows/build_tensorflow.yml
+++ b/.github/workflows/build_tensorflow.yml
@@ -65,13 +65,13 @@ jobs:
           conda list
 
       - name: Build conda package (Windows)
-        if: env.RUN_BUILD_JOB == 'true'
+        if: (runner.os == 'Windows') && (env.RUN_BUILD_JOB == 'true')
         shell: powershell
         run: |
           conda build --debug ${{ matrix.build-folder }} --output-folder ${{ matrix.env-prefix }}build.tensorflow -c conda-forge
 
       - name: Build conda package (not Windows)
-        if: env.RUN_BUILD_JOB == 'true'
+        if: (runner.os != 'Windows') && (env.RUN_BUILD_JOB == 'true')
         shell: bash -l {0}
         run: |
           conda build --debug ${{ matrix.build-folder }} --output-folder build.tensorflow -c conda-forge

From 3484d39e82fc7b72838f54b3bc1a3f8b63cdc8f5 Mon Sep 17 00:00:00 2001
From: roomrys <38435167+roomrys@users.noreply.github.com>
Date: Thu, 12 Sep 2024 06:59:54 -0700
Subject: [PATCH 47/56] Change output folder to build not build.tensorflow

---
 .github/workflows/build_tensorflow.yml | 12 ++++++------
 1 file changed, 6 insertions(+), 6 deletions(-)

diff --git a/.github/workflows/build_tensorflow.yml b/.github/workflows/build_tensorflow.yml
index 37fa10e..750dedb 100644
--- a/.github/workflows/build_tensorflow.yml
+++ b/.github/workflows/build_tensorflow.yml
@@ -68,13 +68,13 @@ jobs:
         if: (runner.os == 'Windows') && (env.RUN_BUILD_JOB == 'true')
         shell: powershell
         run: |
-          conda build --debug ${{ matrix.build-folder }} --output-folder ${{ matrix.env-prefix }}build.tensorflow -c conda-forge
+          conda build --debug ${{ matrix.build-folder }} --output-folder ${{ matrix.env-prefix }}build -c conda-forge
 
       - name: Build conda package (not Windows)
         if: (runner.os != 'Windows') && (env.RUN_BUILD_JOB == 'true')
         shell: bash -l {0}
         run: |
-          conda build --debug ${{ matrix.build-folder }} --output-folder build.tensorflow -c conda-forge
+          conda build --debug ${{ matrix.build-folder }} --output-folder build -c conda-forge
 
       # Upload the build artifact incase anaconda upload fails
       - name: Upload conda package artifact
@@ -82,7 +82,7 @@ jobs:
         uses: actions/upload-artifact@v4
         with:
           name: tensorflow-build-${{ matrix.os-folder }}
-          path: ${{ matrix.env-prefix }}build.tensorflow # Upload entire build directory
+          path: ${{ matrix.env-prefix }}build # Upload entire build directory
           retention-days: 1
 
   upload:
@@ -111,8 +111,8 @@ jobs:
         uses: actions/download-artifact@v4
         id: download
         with:
-          name: sleap-build-${{ matrix.os-folder }}
-          path: build.tensorflow
+          name: tensorflow-build-${{ matrix.os-folder }}
+          path: build
           run-id: ${{ env.RUN_ID }}
           github-token: ${{ secrets.GITHUB_TOKEN }}
 
@@ -136,5 +136,5 @@ jobs:
         shell: bash -l {0}
         run: |
           anaconda login --username sleap-deps --password "$ANACONDA_PASSWORD"
-          anaconda -v upload build.tensorflow/${{ matrix.os-folder }}/*.tar.bz2 --label dev --user sleap-deps
+          anaconda -v upload build/${{ matrix.os-folder }}/*.tar.bz2 --label dev --user sleap-deps
           anaconda logout

From 4568310f12a398bdca6bc10bf57a0d663983bb9d Mon Sep 17 00:00:00 2001
From: roomrys <38435167+roomrys@users.noreply.github.com>
Date: Thu, 12 Sep 2024 07:01:58 -0700
Subject: [PATCH 48/56] Retry download (w/o build)

---
 .github/workflows/build_tensorflow.yml | 6 +++---
 1 file changed, 3 insertions(+), 3 deletions(-)

diff --git a/.github/workflows/build_tensorflow.yml b/.github/workflows/build_tensorflow.yml
index 750dedb..fa204a8 100644
--- a/.github/workflows/build_tensorflow.yml
+++ b/.github/workflows/build_tensorflow.yml
@@ -16,15 +16,15 @@ on:
 
 # If RUN_BUILD_JOB is set to true, then RUN_ID will be overwritten to the current run id
 env:
-  RUN_BUILD_JOB: true
-  RUN_ID: 10713717594 # Only used if RUN_BUILD_JOB is false (to dowload build artifact)
+  RUN_BUILD_JOB: false # TODO(LM): Set to true
+  RUN_ID: 10824742361 # Only used if RUN_BUILD_JOB is false (to dowload build artifact)
 
 jobs:
   build:
     name: Build package (${{ matrix.os }})
     runs-on: ${{ matrix.os }}
     strategy:
-      fail-fast: false # TODO(LM): Set to true
+      fail-fast: true
       matrix:
         os: ["ubuntu-22.04", "windows-2022", "macos-14"]
         include:

From 53d2a6251bd73b6cadbf069efac68616c6d32649 Mon Sep 17 00:00:00 2001
From: roomrys <38435167+roomrys@users.noreply.github.com>
Date: Thu, 12 Sep 2024 07:04:52 -0700
Subject: [PATCH 49/56] Always run set-up miniconda and upload to anaconda

---
 .github/workflows/build_tensorflow.yml | 2 --
 1 file changed, 2 deletions(-)

diff --git a/.github/workflows/build_tensorflow.yml b/.github/workflows/build_tensorflow.yml
index fa204a8..5265072 100644
--- a/.github/workflows/build_tensorflow.yml
+++ b/.github/workflows/build_tensorflow.yml
@@ -122,7 +122,6 @@ jobs:
           python-version: ${{ matrix.pyver }}
 
       - name: Setup Miniconda
-        if: env.RUN_BUILD_JOB == 'true'
         uses: conda-incubator/setup-miniconda@v3.0.3
         with:
           python-version: "3.10"
@@ -130,7 +129,6 @@ jobs:
           activate-environment: tf
 
       - name: Upload to Anaconda
-        if: env.RUN_BUILD_JOB == 'true'
         env:
           ANACONDA_PASSWORD: ${{ secrets.ANACONDA_PASSWORD }}
         shell: bash -l {0}

From 8e0aa8ec4466e121cb2213b11cb8485cd0051bf4 Mon Sep 17 00:00:00 2001
From: roomrys <38435167+roomrys@users.noreply.github.com>
Date: Thu, 12 Sep 2024 07:07:04 -0700
Subject: [PATCH 50/56] Add a repo checkout before setup miniconda

---
 .github/workflows/build_tensorflow.yml | 5 +++++
 1 file changed, 5 insertions(+)

diff --git a/.github/workflows/build_tensorflow.yml b/.github/workflows/build_tensorflow.yml
index 5265072..67e0bc8 100644
--- a/.github/workflows/build_tensorflow.yml
+++ b/.github/workflows/build_tensorflow.yml
@@ -116,6 +116,11 @@ jobs:
           run-id: ${{ env.RUN_ID }}
           github-token: ${{ secrets.GITHUB_TOKEN }}
 
+      # Checkout the repository
+      - name: Checkout
+        if: env.RUN_BUILD_JOB == 'true'
+        uses: actions/checkout@v4
+
       - name: Setup Python
         uses: actions/setup-python@v5
         with:

From 0419f8fc13b686be9eeee50a3fc213fd54d27b12 Mon Sep 17 00:00:00 2001
From: roomrys <38435167+roomrys@users.noreply.github.com>
Date: Thu, 12 Sep 2024 07:08:29 -0700
Subject: [PATCH 51/56] Always run checkout

---
 .github/workflows/build_tensorflow.yml | 1 -
 1 file changed, 1 deletion(-)

diff --git a/.github/workflows/build_tensorflow.yml b/.github/workflows/build_tensorflow.yml
index 67e0bc8..5acab31 100644
--- a/.github/workflows/build_tensorflow.yml
+++ b/.github/workflows/build_tensorflow.yml
@@ -118,7 +118,6 @@ jobs:
 
       # Checkout the repository
       - name: Checkout
-        if: env.RUN_BUILD_JOB == 'true'
         uses: actions/checkout@v4
 
       - name: Setup Python

From 4d2047c44114f6a5d936dbb9b52dabee169498a7 Mon Sep 17 00:00:00 2001
From: roomrys <38435167+roomrys@users.noreply.github.com>
Date: Thu, 12 Sep 2024 07:15:01 -0700
Subject: [PATCH 52/56] List items in current directory

---
 .github/workflows/build_tensorflow.yml | 7 ++++++-
 1 file changed, 6 insertions(+), 1 deletion(-)

diff --git a/.github/workflows/build_tensorflow.yml b/.github/workflows/build_tensorflow.yml
index 5acab31..97b93dd 100644
--- a/.github/workflows/build_tensorflow.yml
+++ b/.github/workflows/build_tensorflow.yml
@@ -116,6 +116,11 @@ jobs:
           run-id: ${{ env.RUN_ID }}
           github-token: ${{ secrets.GITHUB_TOKEN }}
 
+      - name: List items in current directory
+        run: |
+          ls .
+          ls -R build
+
       # Checkout the repository
       - name: Checkout
         uses: actions/checkout@v4
@@ -138,5 +143,5 @@ jobs:
         shell: bash -l {0}
         run: |
           anaconda login --username sleap-deps --password "$ANACONDA_PASSWORD"
-          anaconda -v upload build/${{ matrix.os-folder }}/*.tar.bz2 --label dev --user sleap-deps
+          anaconda -v upload "build/${{ matrix.os-folder }}/*.tar.bz2" --label dev --user sleap-deps
           anaconda logout

From 96962bcba1faaef9f46110796880bf3170ba1691 Mon Sep 17 00:00:00 2001
From: roomrys <38435167+roomrys@users.noreply.github.com>
Date: Thu, 12 Sep 2024 07:20:17 -0700
Subject: [PATCH 53/56] Move checkout to the top and list to bottom

---
 .github/workflows/build_tensorflow.yml | 18 +++++++++---------
 1 file changed, 9 insertions(+), 9 deletions(-)

diff --git a/.github/workflows/build_tensorflow.yml b/.github/workflows/build_tensorflow.yml
index 97b93dd..73d7d51 100644
--- a/.github/workflows/build_tensorflow.yml
+++ b/.github/workflows/build_tensorflow.yml
@@ -101,6 +101,10 @@ jobs:
             os-folder: osx-arm64
 
     steps:
+      # Checkout the repository
+      - name: Checkout
+        uses: actions/checkout@v4
+
       - name: Use current run id for conda package download
         shell: bash -l {0}
         if: env.RUN_BUILD_JOB == 'true'
@@ -116,15 +120,6 @@ jobs:
           run-id: ${{ env.RUN_ID }}
           github-token: ${{ secrets.GITHUB_TOKEN }}
 
-      - name: List items in current directory
-        run: |
-          ls .
-          ls -R build
-
-      # Checkout the repository
-      - name: Checkout
-        uses: actions/checkout@v4
-
       - name: Setup Python
         uses: actions/setup-python@v5
         with:
@@ -137,6 +132,11 @@ jobs:
           environment-file: environment.tensorflow.yml
           activate-environment: tf
 
+      - name: List items in current directory
+        run: |
+          ls .
+          ls -R build
+
       - name: Upload to Anaconda
         env:
           ANACONDA_PASSWORD: ${{ secrets.ANACONDA_PASSWORD }}

From a3f893527911ce1ccbc1b3162a99909425a895c0 Mon Sep 17 00:00:00 2001
From: roomrys <38435167+roomrys@users.noreply.github.com>
Date: Thu, 12 Sep 2024 07:25:43 -0700
Subject: [PATCH 54/56] List current working directory

---
 .github/workflows/build_tensorflow.yml | 3 ++-
 1 file changed, 2 insertions(+), 1 deletion(-)

diff --git a/.github/workflows/build_tensorflow.yml b/.github/workflows/build_tensorflow.yml
index 73d7d51..404ba25 100644
--- a/.github/workflows/build_tensorflow.yml
+++ b/.github/workflows/build_tensorflow.yml
@@ -134,6 +134,7 @@ jobs:
 
       - name: List items in current directory
         run: |
+          pwd
           ls .
           ls -R build
 
@@ -143,5 +144,5 @@ jobs:
         shell: bash -l {0}
         run: |
           anaconda login --username sleap-deps --password "$ANACONDA_PASSWORD"
-          anaconda -v upload "build/${{ matrix.os-folder }}/*.tar.bz2" --label dev --user sleap-deps
+          anaconda -v upload "./build/${{ matrix.os-folder }}/*.tar.bz2" --label dev --user sleap-deps
           anaconda logout

From a4b464dfb878bbf185ebe33f4e718329bd6644a7 Mon Sep 17 00:00:00 2001
From: roomrys <38435167+roomrys@users.noreply.github.com>
Date: Thu, 12 Sep 2024 07:36:23 -0700
Subject: [PATCH 55/56] Move set-up python and miniconda before download

---
 .github/workflows/build_tensorflow.yml | 26 +++++++++++++-------------
 1 file changed, 13 insertions(+), 13 deletions(-)

diff --git a/.github/workflows/build_tensorflow.yml b/.github/workflows/build_tensorflow.yml
index 404ba25..c106ca5 100644
--- a/.github/workflows/build_tensorflow.yml
+++ b/.github/workflows/build_tensorflow.yml
@@ -105,6 +105,18 @@ jobs:
       - name: Checkout
         uses: actions/checkout@v4
 
+      - name: Setup Python
+        uses: actions/setup-python@v5
+        with:
+          python-version: ${{ matrix.pyver }}
+
+      - name: Setup Miniconda
+        uses: conda-incubator/setup-miniconda@v3.0.3
+        with:
+          python-version: "3.10"
+          environment-file: environment.tensorflow.yml
+          activate-environment: tf
+
       - name: Use current run id for conda package download
         shell: bash -l {0}
         if: env.RUN_BUILD_JOB == 'true'
@@ -120,21 +132,9 @@ jobs:
           run-id: ${{ env.RUN_ID }}
           github-token: ${{ secrets.GITHUB_TOKEN }}
 
-      - name: Setup Python
-        uses: actions/setup-python@v5
-        with:
-          python-version: ${{ matrix.pyver }}
-
-      - name: Setup Miniconda
-        uses: conda-incubator/setup-miniconda@v3.0.3
-        with:
-          python-version: "3.10"
-          environment-file: environment.tensorflow.yml
-          activate-environment: tf
-
       - name: List items in current directory
+        shell: bash -l {0}
         run: |
-          pwd
           ls .
           ls -R build
 

From 8833e8badfdca14a3bbd2917e421cb3b4856887b Mon Sep 17 00:00:00 2001
From: roomrys <38435167+roomrys@users.noreply.github.com>
Date: Thu, 12 Sep 2024 07:55:42 -0700
Subject: [PATCH 56/56] Separate upload for windows and not windows

---
 .github/workflows/build_tensorflow.yml | 15 +++++++++++++--
 1 file changed, 13 insertions(+), 2 deletions(-)

diff --git a/.github/workflows/build_tensorflow.yml b/.github/workflows/build_tensorflow.yml
index c106ca5..b105bf1 100644
--- a/.github/workflows/build_tensorflow.yml
+++ b/.github/workflows/build_tensorflow.yml
@@ -138,11 +138,22 @@ jobs:
           ls .
           ls -R build
 
-      - name: Upload to Anaconda
+      - name: Upload to Anaconda (Windows)
+        if: runner.os == 'Windows'
         env:
           ANACONDA_PASSWORD: ${{ secrets.ANACONDA_PASSWORD }}
         shell: bash -l {0}
         run: |
           anaconda login --username sleap-deps --password "$ANACONDA_PASSWORD"
-          anaconda -v upload "./build/${{ matrix.os-folder }}/*.tar.bz2" --label dev --user sleap-deps
+          anaconda -v upload "build/${{ matrix.os-folder }}/*.tar.bz2" --label dev --user sleap-deps
+          anaconda logout
+
+      - name: Upload to Anaconda (not Windows)
+        if: runner.os != 'Windows'
+        env:
+          ANACONDA_PASSWORD: ${{ secrets.ANACONDA_PASSWORD }}
+        shell: bash -l {0}
+        run: |
+          anaconda login --username sleap-deps --password "$ANACONDA_PASSWORD"
+          anaconda -v upload build/${{ matrix.os-folder }}/*.tar.bz2 --label dev --user sleap-deps
           anaconda logout