Dependency management (#118)

* Drop `av` as a hard dependency

* Remove av and fix tests

* Remove livecov from dev tools

* Pin ndx-pose

* Pin ndx-pose

* Bump to 0.1.9

environment.yml

@@ -8,7 +8,6 @@ dependencies:
  - ffmpeg
  - imageio
  - imageio-ffmpeg >=0.5.0
- - av
  - attrs
  - pandas
  - simplejson
@@ -17,7 +16,7 @@ dependencies:
  - numpy
  - opencv
  - pynwb
- - ndx-pose
+ - ndx-pose<0.2.0
  - pytest
  - pytest-cov
  - black

pyproject.toml

@@ -24,12 +24,11 @@ dependencies = [
  "attrs",
  "h5py>=3.8.0",
  "pynwb",
- "ndx-pose",
+ "ndx-pose<0.2.0",
  "pandas",
  "simplejson",
  "imageio",
- "imageio-ffmpeg>=0.5.0",
- "av"]
+ "imageio-ffmpeg>=0.5.0"]
 dynamic = ["version", "readme"]
 
 [tool.setuptools.dynamic]
@@ -67,9 +66,3 @@ line-length = 88
 [pydocstyle]
 convention = "google"
 match-dir = "sleap_io"
-
-[tool.coverage.run]
-source = ["livecov"]
-
-[tool.pytest.ini_options]
-addopts = "--cov sleap_io --cov-report=lcov:lcov.info --cov-report=term"

sleap_io/version.py

@@ -2,4 +2,4 @@
 
 # Define package version.
 # This is read dynamically by setuptools in pyproject.toml to determine the release version.
-__version__ = "0.1.8"
+__version__ = "0.1.9"

tests/io/test_video_backends.py

@@ -59,6 +59,7 @@ def test_get_frame(centered_pair_low_quality_path):
 
 @pytest.mark.parametrize("keep_open", [False, True])
 def test_mediavideo(centered_pair_low_quality_path, keep_open):
+ # Test with FFMPEG backend
  backend = VideoBackend.from_filename(
  centered_pair_low_quality_path, plugin="FFMPEG", keep_open=keep_open
  )
@@ -74,21 +75,28 @@ def test_mediavideo(centered_pair_low_quality_path, keep_open):
  else:
  assert backend._open_reader is None
 
- backend = VideoBackend.from_filename(
- centered_pair_low_quality_path, plugin="pyav", keep_open=keep_open
- )
- assert type(backend) == MediaVideo
- assert backend.filename == centered_pair_low_quality_path
- assert backend.shape == (1100, 384, 384, 1)
- assert backend[0].shape == (384, 384, 1)
- assert backend[:3].shape == (3, 384, 384, 1)
- if keep_open:
- assert backend._open_reader is not None
- assert backend[0].shape == (384, 384, 1)
- assert type(backend._open_reader).__name__ == "PyAVPlugin"
- else:
- assert backend._open_reader is None
+ # Test with pyav backend (if installed)
+ try:
+ import av
 
+ backend = VideoBackend.from_filename(
+ centered_pair_low_quality_path, plugin="pyav", keep_open=keep_open
+ )
+ assert type(backend) == MediaVideo
+ assert backend.filename == centered_pair_low_quality_path
+ assert backend.shape == (1100, 384, 384, 1)
+ assert backend[0].shape == (384, 384, 1)
+ assert backend[:3].shape == (3, 384, 384, 1)
+ if keep_open:
+ assert backend._open_reader is not None
+ assert backend[0].shape == (384, 384, 1)
+ assert type(backend._open_reader).__name__ == "PyAVPlugin"
+ else:
+ assert backend._open_reader is None
+ except ImportError:
+ pass
+
+ # Test with opencv backend
  backend = VideoBackend.from_filename(
  centered_pair_low_quality_path, plugin="opencv", keep_open=keep_open
  )