Skip to content
New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

Sign up for GitHub

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

Jump to bottom

Adjust adata generation for flexible cell type annotation #21

Open
2 tasks done
xlancelottx opened this issue Sep 21, 2022 · 0 comments
Open
2 tasks done

Adjust adata generation for flexible cell type annotation #21

xlancelottx opened this issue Sep 21, 2022 · 0 comments
Assignees
@xlancelottx

Comments

@xlancelottx
Copy link
Contributor

xlancelottx commented Sep 21, 2022 •
edited
Loading

Update generate_adata to call ct annotation separately depending on argument:

  • add ct column names with method descriptors (majority_vote, ssam, psiSeq, marker_based, landmark)
  • assign chosen ct annotation method as column name "celltype"
@xlancelottx xlancelottx changed the title Adjust adata generation for fleible cell type annotation Adjust adata generation for flexible cell type annotation Sep 21, 2022
Sign up for free to join this conversation on GitHub. Already have an account? Sign in to comment
Assignees

@xlancelottx xlancelottx

Labels
None yet
Projects
None yet
Milestone
No milestone
Development

No branches or pull requests
1 participant
@xlancelottx