From b261cb167120e7e20c725647b5efa64d5c89700e Mon Sep 17 00:00:00 2001 From: Theo Sanderson Date: Fri, 14 Jul 2023 15:26:01 +0800 Subject: [PATCH] Update ushertools.py --- taxoniumtools/src/taxoniumtools/ushertools.py | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/taxoniumtools/src/taxoniumtools/ushertools.py b/taxoniumtools/src/taxoniumtools/ushertools.py index 7e709b2a..20d18be4 100644 --- a/taxoniumtools/src/taxoniumtools/ushertools.py +++ b/taxoniumtools/src/taxoniumtools/ushertools.py @@ -136,7 +136,7 @@ def get_mutations(past_nuc_muts_dict, #(gene, codon_number + 1, initial_codon_trans, final_codon_trans) mutations_here.append( - AAMutation(gene=gene_codon.gene.name, + AAMutation(gene=gene_codon.gene, one_indexed_codon=gene_codon.codon_number + 1, initial_aa=initial_codon_trans, final_aa=final_codon_trans,