From b6e1376d84b23d310cfb5ed72d3b87705f93b936 Mon Sep 17 00:00:00 2001 From: Thomas Lin Pedersen Date: Tue, 26 Apr 2022 10:27:36 +0200 Subject: [PATCH 1/7] Reapply #4750 to quick patch release --- R/scale-discrete-.r | 4 ++-- 1 file changed, 2 insertions(+), 2 deletions(-) diff --git a/R/scale-discrete-.r b/R/scale-discrete-.r index 5c7bef8134..555b902db1 100644 --- a/R/scale-discrete-.r +++ b/R/scale-discrete-.r @@ -170,6 +170,6 @@ c.mapped_discrete <- function(..., recursive = FALSE) { new_mapped_discrete(NextMethod()) } #' @export -as.data.frame.mapped_discrete <- function (x, ..., stringsAsFactors = default.stringsAsFactors()) { - as.data.frame.vector(x = unclass(x), ..., stringsAsFactors = stringsAsFactors) +as.data.frame.mapped_discrete <- function (x, ...) { + as.data.frame.vector(x = unclass(x), ...) } From b0cc87ca67b825ee8aff2c270eebd3a7f2671209 Mon Sep 17 00:00:00 2001 From: Thomas Lin Pedersen Date: Tue, 26 Apr 2022 10:31:13 +0200 Subject: [PATCH 2/7] Update NEWS.md --- NEWS.md | 5 +++++ 1 file changed, 5 insertions(+) diff --git a/NEWS.md b/NEWS.md index 950c3f555a..d91788dd38 100644 --- a/NEWS.md +++ b/NEWS.md @@ -1,3 +1,8 @@ +# ggplot2 3.3.6 +This is a very small release only applying an internal change to comply with +R 4.2 and its deprecation of `default.stringsAsFactors()`. There are no user +facing changes and no breaking changes. + # ggplot2 3.3.5 This is a very small release focusing on fixing a couple of untenable issues that surfaced with the 3.3.4 release From f60c0c1ced8ff22ac931aeca6627856aee925e77 Mon Sep 17 00:00:00 2001 From: Thomas Lin Pedersen Date: Tue, 26 Apr 2022 10:32:03 +0200 Subject: [PATCH 3/7] increment version number --- DESCRIPTION | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/DESCRIPTION b/DESCRIPTION index 9f4bad40c9..f73f52b271 100644 --- a/DESCRIPTION +++ b/DESCRIPTION @@ -1,5 +1,5 @@ Package: ggplot2 -Version: 3.3.5 +Version: 3.3.6 Title: Create Elegant Data Visualisations Using the Grammar of Graphics Description: A system for 'declaratively' creating graphics, based on "The Grammar of Graphics". You provide the data, tell 'ggplot2' From 30065fc46c3a63387d648b1ed89970c1e50c6414 Mon Sep 17 00:00:00 2001 From: Thomas Lin Pedersen Date: Tue, 26 Apr 2022 13:10:05 +0200 Subject: [PATCH 4/7] run revdepcheck --- README.md | 2 +- cran-comments.md | 35 +- revdep/README.md | 66 +- revdep/cran.md | 56 +- revdep/failures.md | 2711 ++---------------------------------- revdep/problems.md | 74 +- tests/testthat/test-data.r | 4 +- 7 files changed, 268 insertions(+), 2680 deletions(-) diff --git a/README.md b/README.md index da3a046e0c..58a40f2117 100644 --- a/README.md +++ b/README.md @@ -7,7 +7,7 @@ status](https://github.com/tidyverse/ggplot2/workflows/R-CMD-check/badge.svg)](https://github.com/tidyverse/ggplot2/actions) [![Coverage Status](https://img.shields.io/codecov/c/github/tidyverse/ggplot2/master.svg)](https://codecov.io/github/tidyverse/ggplot2?branch=master) -[![CRAN\_Status\_Badge](https://www.r-pkg.org/badges/version/ggplot2)](https://cran.r-project.org/package=ggplot2) +[![CRAN_Status_Badge](https://www.r-pkg.org/badges/version/ggplot2)](https://cran.r-project.org/package=ggplot2) ## Overview diff --git a/cran-comments.md b/cran-comments.md index c205ecc5c0..24e9b543d4 100644 --- a/cran-comments.md +++ b/cran-comments.md @@ -1,7 +1,36 @@ -This is a very quick patch release addressing some unforeseen issues with the -latest release. It does not contain any breaking changes and no changes to worse -in the reverse dependencies was detected. +This is a small release as requested by CRAN to remove a call to the deprecated +`default.stringsAsFactors()` in base. This patch contains no user facing changes +and no breaking changes. ## R CMD check results 0 errors | 0 warnings | 0 note + +## revdepcheck results + +We checked 3967 reverse dependencies, comparing R CMD check results across CRAN +and dev versions of this package. + + * We saw 2 new problems + * We failed to check 6 packages + +Issues with CRAN packages are summarised below. Looking into the 2 problems, +none of them are related to ggplot2. + +### New problems +(This reports the first line of each new failure) + +* eurlex + checking re-building of vignette outputs ... WARNING + +* gggrid + checking re-building of vignette outputs ... WARNING + +### Failed to check + +* CausalImpact (NA) +* ctsem (NA) +* loon.ggplot (NA) +* SSVS (NA) +* valse (NA) +* vivid (NA) diff --git a/revdep/README.md b/revdep/README.md index 8f74a75cd0..9796d007a4 100644 --- a/revdep/README.md +++ b/revdep/README.md @@ -1,58 +1,20 @@ # Revdeps -## Failed to check (45) +## Failed to check (6) -|package |version |error |warning |note | -|:----------------|:-------|:-----|:-------|:----| -|ActivePathways |? | | | | -|apc |? | | | | -|apisensr |? | | | | -|backShift |? | | | | -|bayesdfa |1.1.0 |1 | | | -|bayesZIB |0.0.2 |1 | | | -|NA |? | | | | -|NA |? | | | | -|btergm |1.9.13 |1 | | | -|CausalImpact |? | | | | -|CB2 |? | | | | -|cbar |? | | | | -|NA |? | | | | -|dfpk |3.5.1 |1 | | | -|diceR |? | | | | -|GenHMM1d |? | | | | -|ggmsa |? | | | | -|ggtern |3.3.0 |1 | |1 | -|glmmfields |0.1.4 |1 | | | -|NA |? | | | | -|mcmcabn |? | | | | -|NA |? | | | | -|metagam |? | | | | -|MoMPCA |? | | | | -|osmplotr |? | | | | -|pcalg |? | | | | -|penaltyLearning |? | | | | -|phylopath |? | | | | -|NA |? | | | | -|rabhit |? | | | | -|raw |? | | | | -|rstap |1.0.3 |1 | | | -|scoper |? | | | | -|spectralAnalysis |? | | | | -|NA |? | | | | -|StroupGLMM |? | | | | -|superb |? | | | | -|SynthETIC |? | | | | -|NA |? | | | | -|tigger |? | | | | -|trackr |? | | | | -|valse |0.1-0 |1 | | | -|vivid |? | | | | -|wrswoR |? | | | | -|zenplots |? | | | | +|package |version |error |warning |note | +|:------------|:-------|:-----|:-------|:----| +|CausalImpact |? | | | | +|ctsem |3.6.0 |1 | | | +|loon.ggplot |? | | | | +|SSVS |? | | | | +|valse |0.1-0 |1 | | | +|vivid |? | | | | -## New problems (1) +## New problems (2) -|package |version |error |warning |note | -|:----------------------------------------|:---------|:-----|:-------|:------| -|[rvinecopulib](problems.md#rvinecopulib) |0.5.5.1.1 |-1 | |__+1__ | +|package |version |error |warning |note | +|:----------------------------|:-------|:-----|:-------|:----| +|[eurlex](problems.md#eurlex) |0.4.1 | |__+1__ | | +|[gggrid](problems.md#gggrid) |0.2-0 | |__+1__ | | diff --git a/revdep/cran.md b/revdep/cran.md index 5b78fa18c9..1c68c8332a 100644 --- a/revdep/cran.md +++ b/revdep/cran.md @@ -1,54 +1,26 @@ ## revdepcheck results -We checked 3197 reverse dependencies (3189 from CRAN + 8 from Bioconductor), comparing R CMD check results across CRAN and dev versions of this package. +We checked 3967 reverse dependencies, comparing R CMD check results across CRAN and dev versions of this package. - * We saw 1 new problems - * We failed to check 37 packages + * We saw 2 new problems + * We failed to check 6 packages Issues with CRAN packages are summarised below. ### New problems (This reports the first line of each new failure) -* rvinecopulib - checking installed package size ... NOTE +* eurlex + checking re-building of vignette outputs ... WARNING + +* gggrid + checking re-building of vignette outputs ... WARNING ### Failed to check -* ActivePathways (NA) -* apc (NA) -* apisensr (NA) -* backShift (NA) -* bayesdfa (NA) -* bayesZIB (NA) -* btergm (NA) -* CausalImpact (NA) -* CB2 (NA) -* cbar (NA) -* dfpk (NA) -* diceR (NA) -* GenHMM1d (NA) -* ggmsa (NA) -* ggtern (NA) -* glmmfields (NA) -* mcmcabn (NA) -* metagam (NA) -* MoMPCA (NA) -* osmplotr (NA) -* pcalg (NA) -* penaltyLearning (NA) -* phylopath (NA) -* rabhit (NA) -* raw (NA) -* rstap (NA) -* scoper (NA) -* spectralAnalysis (NA) -* StroupGLMM (NA) -* superb (NA) -* SynthETIC (NA) -* tigger (NA) -* trackr (NA) -* valse (NA) -* vivid (NA) -* wrswoR (NA) -* zenplots (NA) +* CausalImpact (NA) +* ctsem (NA) +* loon.ggplot (NA) +* SSVS (NA) +* valse (NA) +* vivid (NA) diff --git a/revdep/failures.md b/revdep/failures.md index 8757d9517a..d52483d496 100644 --- a/revdep/failures.md +++ b/revdep/failures.md @@ -1,2186 +1,14 @@ -# ActivePathways - -
- -* Version: 1.0.2 -* GitHub: https://github.com/reimandlab/ActivePathways -* Source code: https://github.com/cran/ActivePathways -* Date/Publication: 2020-07-09 17:20:02 UTC -* Number of recursive dependencies: 88 - -Run `cloud_details(, "ActivePathways")` for more info - -
- -## Error before installation - -### Devel - -``` -* using log directory ‘/tmp/workdir/ActivePathways/new/ActivePathways.Rcheck’ -* using R version 4.0.3 (2020-10-10) -* using platform: x86_64-pc-linux-gnu (64-bit) -* using session charset: UTF-8 -* using options ‘--no-manual --no-build-vignettes’ -* checking for file ‘ActivePathways/DESCRIPTION’ ... OK -* this is package ‘ActivePathways’ version ‘1.0.2’ -* package encoding: UTF-8 -* checking package namespace information ... OK -* checking package dependencies ... NOTE -... - [ FAIL 1 | WARN 0 | SKIP 0 | PASS 70 ] - Error: Test failures - Execution halted -* checking for unstated dependencies in vignettes ... OK -* checking package vignettes in ‘inst/doc’ ... OK -* checking running R code from vignettes ... NONE - ‘ActivePathways-vignette.Rmd’ using ‘UTF-8’... OK -* checking re-building of vignette outputs ... SKIPPED -* DONE -Status: 1 ERROR, 1 NOTE - - - - - -``` -### CRAN - -``` -* using log directory ‘/tmp/workdir/ActivePathways/old/ActivePathways.Rcheck’ -* using R version 4.0.3 (2020-10-10) -* using platform: x86_64-pc-linux-gnu (64-bit) -* using session charset: UTF-8 -* using options ‘--no-manual --no-build-vignettes’ -* checking for file ‘ActivePathways/DESCRIPTION’ ... OK -* this is package ‘ActivePathways’ version ‘1.0.2’ -* package encoding: UTF-8 -* checking package namespace information ... OK -* checking package dependencies ... NOTE -... - [ FAIL 1 | WARN 0 | SKIP 0 | PASS 70 ] - Error: Test failures - Execution halted -* checking for unstated dependencies in vignettes ... OK -* checking package vignettes in ‘inst/doc’ ... OK -* checking running R code from vignettes ... NONE - ‘ActivePathways-vignette.Rmd’ using ‘UTF-8’... OK -* checking re-building of vignette outputs ... SKIPPED -* DONE -Status: 1 ERROR, 1 NOTE - - - - - -``` -# apc - -
- -* Version: 2.0.0 -* GitHub: NA -* Source code: https://github.com/cran/apc -* Date/Publication: 2020-10-01 23:20:06 UTC -* Number of recursive dependencies: 113 - -Run `cloud_details(, "apc")` for more info - -
- -## Error before installation - -### Devel - -``` -* using log directory ‘/tmp/workdir/apc/new/apc.Rcheck’ -* using R version 4.0.3 (2020-10-10) -* using platform: x86_64-pc-linux-gnu (64-bit) -* using session charset: UTF-8 -* using options ‘--no-manual --no-build-vignettes’ -* checking for file ‘apc/DESCRIPTION’ ... OK -* checking extension type ... Package -* this is package ‘apc’ version ‘2.0.0’ -* checking package namespace information ... OK -* checking package dependencies ... ERROR -Package required but not available: ‘ChainLadder’ - -See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’ -manual. -* DONE -Status: 1 ERROR - - - - - -``` -### CRAN - -``` -* using log directory ‘/tmp/workdir/apc/old/apc.Rcheck’ -* using R version 4.0.3 (2020-10-10) -* using platform: x86_64-pc-linux-gnu (64-bit) -* using session charset: UTF-8 -* using options ‘--no-manual --no-build-vignettes’ -* checking for file ‘apc/DESCRIPTION’ ... OK -* checking extension type ... Package -* this is package ‘apc’ version ‘2.0.0’ -* checking package namespace information ... OK -* checking package dependencies ... ERROR -Package required but not available: ‘ChainLadder’ - -See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’ -manual. -* DONE -Status: 1 ERROR - - - - - -``` -# apisensr - -
- -* Version: 0.3.0 -* GitHub: https://github.com/dhaine/apisensr -* Source code: https://github.com/cran/apisensr -* Date/Publication: 2021-03-15 11:20:09 UTC -* Number of recursive dependencies: 128 - -Run `cloud_details(, "apisensr")` for more info - -
- -## Error before installation - -### Devel - -``` -* using log directory ‘/tmp/workdir/apisensr/new/apisensr.Rcheck’ -* using R version 4.0.3 (2020-10-10) -* using platform: x86_64-pc-linux-gnu (64-bit) -* using session charset: UTF-8 -* using options ‘--no-manual --no-build-vignettes’ -* checking for file ‘apisensr/DESCRIPTION’ ... OK -* this is package ‘apisensr’ version ‘0.3.0’ -* package encoding: UTF-8 -* checking package namespace information ... OK -* checking package dependencies ... ERROR -Package required but not available: ‘episensr’ - -See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’ -manual. -* DONE -Status: 1 ERROR - - - - - -``` -### CRAN - -``` -* using log directory ‘/tmp/workdir/apisensr/old/apisensr.Rcheck’ -* using R version 4.0.3 (2020-10-10) -* using platform: x86_64-pc-linux-gnu (64-bit) -* using session charset: UTF-8 -* using options ‘--no-manual --no-build-vignettes’ -* checking for file ‘apisensr/DESCRIPTION’ ... OK -* this is package ‘apisensr’ version ‘0.3.0’ -* package encoding: UTF-8 -* checking package namespace information ... OK -* checking package dependencies ... ERROR -Package required but not available: ‘episensr’ - -See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’ -manual. -* DONE -Status: 1 ERROR - - - - - -``` -# backShift - -
- -* Version: 0.1.4.3 -* GitHub: https://github.com/christinaheinze/backShift -* Source code: https://github.com/cran/backShift -* Date/Publication: 2020-05-06 11:30:03 UTC -* Number of recursive dependencies: 89 - -Run `cloud_details(, "backShift")` for more info - -
- -## Error before installation - -### Devel - -``` -* using log directory ‘/tmp/workdir/backShift/new/backShift.Rcheck’ -* using R version 4.0.3 (2020-10-10) -* using platform: x86_64-pc-linux-gnu (64-bit) -* using session charset: UTF-8 -* using options ‘--no-manual --no-build-vignettes’ -* checking for file ‘backShift/DESCRIPTION’ ... OK -* checking extension type ... Package -* this is package ‘backShift’ version ‘0.1.4.3’ -* checking package namespace information ... OK -* checking package dependencies ... NOTE -... -* checking for unstated dependencies in ‘tests’ ... OK -* checking tests ... OK - Running ‘testthat.R’ -* checking for unstated dependencies in vignettes ... OK -* checking package vignettes in ‘inst/doc’ ... OK -* checking running R code from vignettes ... NONE - ‘exampleBackShift.Rmd’ using ‘UTF-8’... OK -* checking re-building of vignette outputs ... SKIPPED -* DONE -Status: 2 NOTEs - - - - - -``` -### CRAN - -``` -* using log directory ‘/tmp/workdir/backShift/old/backShift.Rcheck’ -* using R version 4.0.3 (2020-10-10) -* using platform: x86_64-pc-linux-gnu (64-bit) -* using session charset: UTF-8 -* using options ‘--no-manual --no-build-vignettes’ -* checking for file ‘backShift/DESCRIPTION’ ... OK -* checking extension type ... Package -* this is package ‘backShift’ version ‘0.1.4.3’ -* checking package namespace information ... OK -* checking package dependencies ... NOTE -... -* checking for unstated dependencies in ‘tests’ ... OK -* checking tests ... OK - Running ‘testthat.R’ -* checking for unstated dependencies in vignettes ... OK -* checking package vignettes in ‘inst/doc’ ... OK -* checking running R code from vignettes ... NONE - ‘exampleBackShift.Rmd’ using ‘UTF-8’... OK -* checking re-building of vignette outputs ... SKIPPED -* DONE -Status: 2 NOTEs - - - - - -``` -# bayesdfa - -
- -* Version: 1.1.0 -* GitHub: https://github.com/fate-ewi/bayesdfa -* Source code: https://github.com/cran/bayesdfa -* Date/Publication: 2021-05-28 18:10:05 UTC -* Number of recursive dependencies: 81 - -Run `cloud_details(, "bayesdfa")` for more info - -
- -## In both - -* checking whether package ‘bayesdfa’ can be installed ... ERROR - ``` - Installation failed. - See ‘/tmp/workdir/bayesdfa/new/bayesdfa.Rcheck/00install.out’ for details. - ``` - -## Installation - -### Devel - -``` -* installing *source* package ‘bayesdfa’ ... -** package ‘bayesdfa’ successfully unpacked and MD5 sums checked -** using staged installation -** libs - - -g++ -std=gnu++14 -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I"../inst/include" -I"/opt/R/4.0.3/lib/R/site-library/StanHeaders/include/src" -DBOOST_DISABLE_ASSERTS -DEIGEN_NO_DEBUG -DBOOST_MATH_OVERFLOW_ERROR_POLICY=errno_on_error -I'/opt/R/4.0.3/lib/R/site-library/BH/include' -I'/opt/R/4.0.3/lib/R/site-library/Rcpp/include' -I'/opt/R/4.0.3/lib/R/site-library/RcppEigen/include' -I'/opt/R/4.0.3/lib/R/site-library/RcppParallel/include' -I'/opt/R/4.0.3/lib/R/site-library/rstan/include' -I'/opt/R/4.0.3/lib/R/site-library/StanHeaders/include' -I/usr/local/include -I'/opt/R/4.0.3/lib/R/site-library/RcppParallel/include' -D_REENTRANT -DSTAN_THREADS -fpic -g -O2 -c RcppExports.cpp -o RcppExports.o -In file included from /opt/R/4.0.3/lib/R/site-library/RcppEigen/include/Eigen/Core:397, - from /opt/R/4.0.3/lib/R/site-library/RcppEigen/include/Eigen/Dense:1, - from /opt/R/4.0.3/lib/R/site-library/RcppEigen/include/RcppEigenForward.h:30, -... -/opt/R/4.0.3/lib/R/site-library/RcppEigen/include/Eigen/src/Core/ProductEvaluators.h:35:90: required from ‘Eigen::internal::evaluator >::evaluator(const XprType&) [with Lhs = Eigen::Product, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Transpose > >, Eigen::Matrix, 0>; Rhs = Eigen::Matrix; int Options = 0; Eigen::internal::evaluator >::XprType = Eigen::Product, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Transpose > >, Eigen::Matrix, 0>, Eigen::Matrix, 0>]’ -/opt/R/4.0.3/lib/R/site-library/RcppEigen/include/Eigen/src/Core/Product.h:132:22: required from ‘Eigen::internal::dense_product_base::operator const Scalar() const [with Lhs = Eigen::Product, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Transpose > >, Eigen::Matrix, 0>; Rhs = Eigen::Matrix; int Option = 0; Eigen::internal::dense_product_base::Scalar = double]’ -/opt/R/4.0.3/lib/R/site-library/StanHeaders/include/src/stan/mcmc/hmc/hamiltonians/dense_e_metric.hpp:23:56: required from ‘double stan::mcmc::dense_e_metric::T(stan::mcmc::dense_e_point&) [with Model = model_dfa_namespace::model_dfa; BaseRNG = boost::random::additive_combine_engine, boost::random::linear_congruential_engine >]’ -/opt/R/4.0.3/lib/R/site-library/StanHeaders/include/src/stan/mcmc/hmc/hamiltonians/dense_e_metric.hpp:22:10: required from here -/opt/R/4.0.3/lib/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:55:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__vector(2) double’} [-Wignored-attributes] -g++: fatal error: Killed signal terminated program cc1plus -compilation terminated. -make: *** [/opt/R/4.0.3/lib/R/etc/Makeconf:179: stanExports_dfa.o] Error 1 -ERROR: compilation failed for package ‘bayesdfa’ -* removing ‘/tmp/workdir/bayesdfa/new/bayesdfa.Rcheck/bayesdfa’ - - -``` -### CRAN - -``` -* installing *source* package ‘bayesdfa’ ... -** package ‘bayesdfa’ successfully unpacked and MD5 sums checked -** using staged installation -** libs - - -g++ -std=gnu++14 -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I"../inst/include" -I"/opt/R/4.0.3/lib/R/site-library/StanHeaders/include/src" -DBOOST_DISABLE_ASSERTS -DEIGEN_NO_DEBUG -DBOOST_MATH_OVERFLOW_ERROR_POLICY=errno_on_error -I'/opt/R/4.0.3/lib/R/site-library/BH/include' -I'/opt/R/4.0.3/lib/R/site-library/Rcpp/include' -I'/opt/R/4.0.3/lib/R/site-library/RcppEigen/include' -I'/opt/R/4.0.3/lib/R/site-library/RcppParallel/include' -I'/opt/R/4.0.3/lib/R/site-library/rstan/include' -I'/opt/R/4.0.3/lib/R/site-library/StanHeaders/include' -I/usr/local/include -I'/opt/R/4.0.3/lib/R/site-library/RcppParallel/include' -D_REENTRANT -DSTAN_THREADS -fpic -g -O2 -c RcppExports.cpp -o RcppExports.o -In file included from /opt/R/4.0.3/lib/R/site-library/RcppEigen/include/Eigen/Core:397, - from /opt/R/4.0.3/lib/R/site-library/RcppEigen/include/Eigen/Dense:1, - from /opt/R/4.0.3/lib/R/site-library/RcppEigen/include/RcppEigenForward.h:30, -... -/opt/R/4.0.3/lib/R/site-library/RcppEigen/include/Eigen/src/Core/ProductEvaluators.h:35:90: required from ‘Eigen::internal::evaluator >::evaluator(const XprType&) [with Lhs = Eigen::Product, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Transpose > >, Eigen::Matrix, 0>; Rhs = Eigen::Matrix; int Options = 0; Eigen::internal::evaluator >::XprType = Eigen::Product, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Transpose > >, Eigen::Matrix, 0>, Eigen::Matrix, 0>]’ -/opt/R/4.0.3/lib/R/site-library/RcppEigen/include/Eigen/src/Core/Product.h:132:22: required from ‘Eigen::internal::dense_product_base::operator const Scalar() const [with Lhs = Eigen::Product, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Transpose > >, Eigen::Matrix, 0>; Rhs = Eigen::Matrix; int Option = 0; Eigen::internal::dense_product_base::Scalar = double]’ -/opt/R/4.0.3/lib/R/site-library/StanHeaders/include/src/stan/mcmc/hmc/hamiltonians/dense_e_metric.hpp:23:56: required from ‘double stan::mcmc::dense_e_metric::T(stan::mcmc::dense_e_point&) [with Model = model_dfa_namespace::model_dfa; BaseRNG = boost::random::additive_combine_engine, boost::random::linear_congruential_engine >]’ -/opt/R/4.0.3/lib/R/site-library/StanHeaders/include/src/stan/mcmc/hmc/hamiltonians/dense_e_metric.hpp:22:10: required from here -/opt/R/4.0.3/lib/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:55:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__vector(2) double’} [-Wignored-attributes] -g++: fatal error: Killed signal terminated program cc1plus -compilation terminated. -make: *** [/opt/R/4.0.3/lib/R/etc/Makeconf:179: stanExports_dfa.o] Error 1 -ERROR: compilation failed for package ‘bayesdfa’ -* removing ‘/tmp/workdir/bayesdfa/old/bayesdfa.Rcheck/bayesdfa’ - - -``` -# bayesZIB - -
- -* Version: 0.0.2 -* GitHub: NA -* Source code: https://github.com/cran/bayesZIB -* Date/Publication: 2021-05-26 09:50:02 UTC -* Number of recursive dependencies: 53 - -Run `cloud_details(, "bayesZIB")` for more info - -
- -## In both - -* checking whether package ‘bayesZIB’ can be installed ... ERROR - ``` - Installation failed. - See ‘/tmp/workdir/bayesZIB/new/bayesZIB.Rcheck/00install.out’ for details. - ``` - -## Installation - -### Devel - -``` -* installing *source* package ‘bayesZIB’ ... -** package ‘bayesZIB’ successfully unpacked and MD5 sums checked -** using staged installation -Error in loadNamespace(name) : there is no package called ‘rstantools’ -Calls: :: ... loadNamespace -> withRestarts -> withOneRestart -> doWithOneRestart -Execution halted -ERROR: configuration failed for package ‘bayesZIB’ -* removing ‘/tmp/workdir/bayesZIB/new/bayesZIB.Rcheck/bayesZIB’ - - -``` -### CRAN - -``` -* installing *source* package ‘bayesZIB’ ... -** package ‘bayesZIB’ successfully unpacked and MD5 sums checked -** using staged installation -Error in loadNamespace(name) : there is no package called ‘rstantools’ -Calls: :: ... loadNamespace -> withRestarts -> withOneRestart -> doWithOneRestart -Execution halted -ERROR: configuration failed for package ‘bayesZIB’ -* removing ‘/tmp/workdir/bayesZIB/old/bayesZIB.Rcheck/bayesZIB’ - - -``` -# NA - -
- -* Version: NA -* GitHub: NA -* Source code: https://github.com/cran/NA -* Number of recursive dependencies: 0 - -Run `cloud_details(, "NA")` for more info - -
- -## Error before installation - -### Devel - -``` - - - - - - -``` -### CRAN - -``` - - - - - - -``` -# NA - -
- -* Version: NA -* GitHub: NA -* Source code: https://github.com/cran/NA -* Number of recursive dependencies: 0 - -Run `cloud_details(, "NA")` for more info - -
- -## Error before installation - -### Devel - -``` - - - - - - -``` -### CRAN - -``` - - - - - - -``` -# btergm - -
- -* Version: 1.9.13 -* GitHub: https://github.com/leifeld/btergm -* Source code: https://github.com/cran/btergm -* Date/Publication: 2020-10-26 14:30:02 UTC -* Number of recursive dependencies: 75 - -Run `cloud_details(, "btergm")` for more info - -
- -## In both - -* checking whether package ‘btergm’ can be installed ... ERROR - ``` - Installation failed. - See ‘/tmp/workdir/btergm/new/btergm.Rcheck/00install.out’ for details. - ``` - -## Installation - -### Devel - -``` -* installing *source* package ‘btergm’ ... -** package ‘btergm’ successfully unpacked and MD5 sums checked -** using staged installation -** R -** inst -** byte-compile and prepare package for lazy loading -Error: object ‘ergm.Cprepare’ is not exported by 'namespace:ergm' -Execution halted -ERROR: lazy loading failed for package ‘btergm’ -* removing ‘/tmp/workdir/btergm/new/btergm.Rcheck/btergm’ - - -``` -### CRAN - -``` -* installing *source* package ‘btergm’ ... -** package ‘btergm’ successfully unpacked and MD5 sums checked -** using staged installation -** R -** inst -** byte-compile and prepare package for lazy loading -Error: object ‘ergm.Cprepare’ is not exported by 'namespace:ergm' -Execution halted -ERROR: lazy loading failed for package ‘btergm’ -* removing ‘/tmp/workdir/btergm/old/btergm.Rcheck/btergm’ - - -``` -# CausalImpact - -
- -* Version: 1.2.7 -* GitHub: NA -* Source code: https://github.com/cran/CausalImpact -* Date/Publication: 2021-06-07 06:40:02 UTC -* Number of recursive dependencies: 68 - -Run `cloud_details(, "CausalImpact")` for more info - -
- -## Error before installation - -### Devel - -``` -* using log directory ‘/tmp/workdir/CausalImpact/new/CausalImpact.Rcheck’ -* using R version 4.0.3 (2020-10-10) -* using platform: x86_64-pc-linux-gnu (64-bit) -* using session charset: UTF-8 -* using options ‘--no-manual --no-build-vignettes’ -* checking for file ‘CausalImpact/DESCRIPTION’ ... OK -* this is package ‘CausalImpact’ version ‘1.2.7’ -* checking package namespace information ... OK -* checking package dependencies ... ERROR -Packages required but not available: 'bsts', 'Boom' - -See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’ -manual. -* DONE -Status: 1 ERROR - - - - - -``` -### CRAN - -``` -* using log directory ‘/tmp/workdir/CausalImpact/old/CausalImpact.Rcheck’ -* using R version 4.0.3 (2020-10-10) -* using platform: x86_64-pc-linux-gnu (64-bit) -* using session charset: UTF-8 -* using options ‘--no-manual --no-build-vignettes’ -* checking for file ‘CausalImpact/DESCRIPTION’ ... OK -* this is package ‘CausalImpact’ version ‘1.2.7’ -* checking package namespace information ... OK -* checking package dependencies ... ERROR -Packages required but not available: 'bsts', 'Boom' - -See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’ -manual. -* DONE -Status: 1 ERROR - - - - - -``` -# CB2 - -
- -* Version: 1.3.4 -* GitHub: NA -* Source code: https://github.com/cran/CB2 -* Date/Publication: 2020-07-24 09:42:24 UTC -* Number of recursive dependencies: 100 - -Run `cloud_details(, "CB2")` for more info - -
- -## Error before installation - -### Devel - -``` -* using log directory ‘/tmp/workdir/CB2/new/CB2.Rcheck’ -* using R version 4.0.3 (2020-10-10) -* using platform: x86_64-pc-linux-gnu (64-bit) -* using session charset: UTF-8 -* using options ‘--no-manual --no-build-vignettes’ -* checking for file ‘CB2/DESCRIPTION’ ... OK -* checking extension type ... Package -* this is package ‘CB2’ version ‘1.3.4’ -* package encoding: UTF-8 -* checking package namespace information ... OK -* checking package dependencies ... ERROR -Package required but not available: ‘metap’ - -See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’ -manual. -* DONE -Status: 1 ERROR - - - - - -``` -### CRAN - -``` -* using log directory ‘/tmp/workdir/CB2/old/CB2.Rcheck’ -* using R version 4.0.3 (2020-10-10) -* using platform: x86_64-pc-linux-gnu (64-bit) -* using session charset: UTF-8 -* using options ‘--no-manual --no-build-vignettes’ -* checking for file ‘CB2/DESCRIPTION’ ... OK -* checking extension type ... Package -* this is package ‘CB2’ version ‘1.3.4’ -* package encoding: UTF-8 -* checking package namespace information ... OK -* checking package dependencies ... ERROR -Package required but not available: ‘metap’ - -See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’ -manual. -* DONE -Status: 1 ERROR - - - - - -``` -# cbar - -
- -* Version: 0.1.3 -* GitHub: https://github.com/zedoul/cbar -* Source code: https://github.com/cran/cbar -* Date/Publication: 2017-10-24 13:20:22 UTC -* Number of recursive dependencies: 63 - -Run `cloud_details(, "cbar")` for more info - -
- -## Error before installation - -### Devel - -``` -* using log directory ‘/tmp/workdir/cbar/new/cbar.Rcheck’ -* using R version 4.0.3 (2020-10-10) -* using platform: x86_64-pc-linux-gnu (64-bit) -* using session charset: UTF-8 -* using options ‘--no-manual --no-build-vignettes’ -* checking for file ‘cbar/DESCRIPTION’ ... OK -* checking extension type ... Package -* this is package ‘cbar’ version ‘0.1.3’ -* checking package namespace information ... OK -* checking package dependencies ... ERROR -Packages required but not available: 'Boom', 'bsts' - -See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’ -manual. -* DONE -Status: 1 ERROR - - - - - -``` -### CRAN - -``` -* using log directory ‘/tmp/workdir/cbar/old/cbar.Rcheck’ -* using R version 4.0.3 (2020-10-10) -* using platform: x86_64-pc-linux-gnu (64-bit) -* using session charset: UTF-8 -* using options ‘--no-manual --no-build-vignettes’ -* checking for file ‘cbar/DESCRIPTION’ ... OK -* checking extension type ... Package -* this is package ‘cbar’ version ‘0.1.3’ -* checking package namespace information ... OK -* checking package dependencies ... ERROR -Packages required but not available: 'Boom', 'bsts' - -See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’ -manual. -* DONE -Status: 1 ERROR - - - - - -``` -# NA - -
- -* Version: NA -* GitHub: NA -* Source code: https://github.com/cran/NA -* Number of recursive dependencies: 0 - -Run `cloud_details(, "NA")` for more info - -
- -## Error before installation - -### Devel - -``` - - - - - - -``` -### CRAN - -``` - - - - - - -``` -# dfpk - -
- -* Version: 3.5.1 -* GitHub: https://github.com/artemis-toumazi/dfpk -* Source code: https://github.com/cran/dfpk -* Date/Publication: 2018-11-09 15:20:06 UTC -* Number of recursive dependencies: 55 - -Run `cloud_details(, "dfpk")` for more info - -
- -## In both - -* checking whether package ‘dfpk’ can be installed ... ERROR - ``` - Installation failed. - See ‘/tmp/workdir/dfpk/new/dfpk.Rcheck/00install.out’ for details. - ``` - -## Installation - -### Devel - -``` -* installing *source* package ‘dfpk’ ... -** package ‘dfpk’ successfully unpacked and MD5 sums checked -** using staged installation -** libs - - -g++ -std=gnu++14 -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I"/opt/R/4.0.3/lib/R/site-library/StanHeaders/include/src" -DBOOST_RESULT_OF_USE_TR1 -DBOOST_NO_DECLTYPE -DBOOST_DISABLE_ASSERTS -I'/opt/R/4.0.3/lib/R/site-library/StanHeaders/include' -I'/opt/R/4.0.3/lib/R/site-library/rstan/include' -I'/opt/R/4.0.3/lib/R/site-library/BH/include' -I'/opt/R/4.0.3/lib/R/site-library/Rcpp/include' -I'/opt/R/4.0.3/lib/R/site-library/RcppEigen/include' -I/usr/local/include -fpic -g -O2 -c Modules.cpp -o Modules.o -In file included from /opt/R/4.0.3/lib/R/site-library/RcppEigen/include/Eigen/Core:397, - from /opt/R/4.0.3/lib/R/site-library/RcppEigen/include/Eigen/Dense:1, - from /opt/R/4.0.3/lib/R/site-library/StanHeaders/include/stan/math/prim/mat/fun/Eigen.hpp:13, -... -/opt/R/4.0.3/lib/R/site-library/RcppEigen/include/Eigen/src/Core/ProductEvaluators.h:35:90: required from ‘Eigen::internal::evaluator >::evaluator(const XprType&) [with Lhs = Eigen::Product, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Transpose > >, Eigen::Matrix, 0>; Rhs = Eigen::Matrix; int Options = 0; Eigen::internal::evaluator >::XprType = Eigen::Product, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Transpose > >, Eigen::Matrix, 0>, Eigen::Matrix, 0>]’ -/opt/R/4.0.3/lib/R/site-library/RcppEigen/include/Eigen/src/Core/Product.h:132:22: required from ‘Eigen::internal::dense_product_base::operator const Scalar() const [with Lhs = Eigen::Product, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Transpose > >, Eigen::Matrix, 0>; Rhs = Eigen::Matrix; int Option = 0; Eigen::internal::dense_product_base::Scalar = double]’ -/opt/R/4.0.3/lib/R/site-library/StanHeaders/include/src/stan/mcmc/hmc/hamiltonians/dense_e_metric.hpp:23:56: required from ‘double stan::mcmc::dense_e_metric::T(stan::mcmc::dense_e_point&) [with Model = model_reg_auc_namespace::model_reg_auc; BaseRNG = boost::random::additive_combine_engine, boost::random::linear_congruential_engine >]’ -/opt/R/4.0.3/lib/R/site-library/StanHeaders/include/src/stan/mcmc/hmc/hamiltonians/dense_e_metric.hpp:22:10: required from here -/opt/R/4.0.3/lib/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:55:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__vector(2) double’} [-Wignored-attributes] -g++: fatal error: Killed signal terminated program cc1plus -compilation terminated. -make: *** [/opt/R/4.0.3/lib/R/etc/Makeconf:181: Modules.o] Error 1 -ERROR: compilation failed for package ‘dfpk’ -* removing ‘/tmp/workdir/dfpk/new/dfpk.Rcheck/dfpk’ - - -``` -### CRAN - -``` -* installing *source* package ‘dfpk’ ... -** package ‘dfpk’ successfully unpacked and MD5 sums checked -** using staged installation -** libs - - -g++ -std=gnu++14 -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I"/opt/R/4.0.3/lib/R/site-library/StanHeaders/include/src" -DBOOST_RESULT_OF_USE_TR1 -DBOOST_NO_DECLTYPE -DBOOST_DISABLE_ASSERTS -I'/opt/R/4.0.3/lib/R/site-library/StanHeaders/include' -I'/opt/R/4.0.3/lib/R/site-library/rstan/include' -I'/opt/R/4.0.3/lib/R/site-library/BH/include' -I'/opt/R/4.0.3/lib/R/site-library/Rcpp/include' -I'/opt/R/4.0.3/lib/R/site-library/RcppEigen/include' -I/usr/local/include -fpic -g -O2 -c Modules.cpp -o Modules.o -In file included from /opt/R/4.0.3/lib/R/site-library/RcppEigen/include/Eigen/Core:397, - from /opt/R/4.0.3/lib/R/site-library/RcppEigen/include/Eigen/Dense:1, - from /opt/R/4.0.3/lib/R/site-library/StanHeaders/include/stan/math/prim/mat/fun/Eigen.hpp:13, -... -/opt/R/4.0.3/lib/R/site-library/RcppEigen/include/Eigen/src/Core/ProductEvaluators.h:35:90: required from ‘Eigen::internal::evaluator >::evaluator(const XprType&) [with Lhs = Eigen::Product, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Transpose > >, Eigen::Matrix, 0>; Rhs = Eigen::Matrix; int Options = 0; Eigen::internal::evaluator >::XprType = Eigen::Product, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Transpose > >, Eigen::Matrix, 0>, Eigen::Matrix, 0>]’ -/opt/R/4.0.3/lib/R/site-library/RcppEigen/include/Eigen/src/Core/Product.h:132:22: required from ‘Eigen::internal::dense_product_base::operator const Scalar() const [with Lhs = Eigen::Product, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Transpose > >, Eigen::Matrix, 0>; Rhs = Eigen::Matrix; int Option = 0; Eigen::internal::dense_product_base::Scalar = double]’ -/opt/R/4.0.3/lib/R/site-library/StanHeaders/include/src/stan/mcmc/hmc/hamiltonians/dense_e_metric.hpp:23:56: required from ‘double stan::mcmc::dense_e_metric::T(stan::mcmc::dense_e_point&) [with Model = model_reg_auc_namespace::model_reg_auc; BaseRNG = boost::random::additive_combine_engine, boost::random::linear_congruential_engine >]’ -/opt/R/4.0.3/lib/R/site-library/StanHeaders/include/src/stan/mcmc/hmc/hamiltonians/dense_e_metric.hpp:22:10: required from here -/opt/R/4.0.3/lib/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:55:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__vector(2) double’} [-Wignored-attributes] -g++: fatal error: Killed signal terminated program cc1plus -compilation terminated. -make: *** [/opt/R/4.0.3/lib/R/etc/Makeconf:181: Modules.o] Error 1 -ERROR: compilation failed for package ‘dfpk’ -* removing ‘/tmp/workdir/dfpk/old/dfpk.Rcheck/dfpk’ - - -``` -# diceR - -
- -* Version: 1.0.4 -* GitHub: https://github.com/AlineTalhouk/diceR -* Source code: https://github.com/cran/diceR -* Date/Publication: 2021-06-04 08:30:02 UTC -* Number of recursive dependencies: 146 - -Run `cloud_details(, "diceR")` for more info - -
- -## Error before installation - -### Devel - -``` -* using log directory ‘/tmp/workdir/diceR/new/diceR.Rcheck’ -* using R version 4.0.3 (2020-10-10) -* using platform: x86_64-pc-linux-gnu (64-bit) -* using session charset: UTF-8 -* using options ‘--no-manual --no-build-vignettes’ -* checking for file ‘diceR/DESCRIPTION’ ... OK -* checking extension type ... Package -* this is package ‘diceR’ version ‘1.0.4’ -* package encoding: UTF-8 -* checking package namespace information ... OK -* checking package dependencies ... ERROR -Package required but not available: ‘NMF’ - -See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’ -manual. -* DONE -Status: 1 ERROR - - - - - -``` -### CRAN - -``` -* using log directory ‘/tmp/workdir/diceR/old/diceR.Rcheck’ -* using R version 4.0.3 (2020-10-10) -* using platform: x86_64-pc-linux-gnu (64-bit) -* using session charset: UTF-8 -* using options ‘--no-manual --no-build-vignettes’ -* checking for file ‘diceR/DESCRIPTION’ ... OK -* checking extension type ... Package -* this is package ‘diceR’ version ‘1.0.4’ -* package encoding: UTF-8 -* checking package namespace information ... OK -* checking package dependencies ... ERROR -Package required but not available: ‘NMF’ - -See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’ -manual. -* DONE -Status: 1 ERROR - - - - - -``` -# GenHMM1d - -
- -* Version: 0.1.0 -* GitHub: NA -* Source code: https://github.com/cran/GenHMM1d -* Date/Publication: 2021-01-21 08:20:03 UTC -* Number of recursive dependencies: 78 - -Run `cloud_details(, "GenHMM1d")` for more info - -
- -## Error before installation - -### Devel - -``` -* using log directory ‘/tmp/workdir/GenHMM1d/new/GenHMM1d.Rcheck’ -* using R version 4.0.3 (2020-10-10) -* using platform: x86_64-pc-linux-gnu (64-bit) -* using session charset: UTF-8 -* using options ‘--no-manual --no-build-vignettes’ -* checking for file ‘GenHMM1d/DESCRIPTION’ ... OK -* checking extension type ... Package -* this is package ‘GenHMM1d’ version ‘0.1.0’ -* package encoding: UTF-8 -* checking package namespace information ... OK -* checking package dependencies ... ERROR -Packages required but not available: 'actuar', 'ssdtools' - -See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’ -manual. -* DONE -Status: 1 ERROR - - - - - -``` -### CRAN - -``` -* using log directory ‘/tmp/workdir/GenHMM1d/old/GenHMM1d.Rcheck’ -* using R version 4.0.3 (2020-10-10) -* using platform: x86_64-pc-linux-gnu (64-bit) -* using session charset: UTF-8 -* using options ‘--no-manual --no-build-vignettes’ -* checking for file ‘GenHMM1d/DESCRIPTION’ ... OK -* checking extension type ... Package -* this is package ‘GenHMM1d’ version ‘0.1.0’ -* package encoding: UTF-8 -* checking package namespace information ... OK -* checking package dependencies ... ERROR -Packages required but not available: 'actuar', 'ssdtools' - -See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’ -manual. -* DONE -Status: 1 ERROR - - - - - -``` -# ggmsa - -
- -* Version: 0.0.6 -* GitHub: NA -* Source code: https://github.com/cran/ggmsa -* Date/Publication: 2021-02-02 10:10:07 UTC -* Number of recursive dependencies: 74 - -Run `cloud_details(, "ggmsa")` for more info - -
- -## Error before installation - -### Devel - -``` -* using log directory ‘/tmp/workdir/ggmsa/new/ggmsa.Rcheck’ -* using R version 4.0.3 (2020-10-10) -* using platform: x86_64-pc-linux-gnu (64-bit) -* using session charset: UTF-8 -* using options ‘--no-manual --no-build-vignettes’ -* checking for file ‘ggmsa/DESCRIPTION’ ... OK -* this is package ‘ggmsa’ version ‘0.0.6’ -* package encoding: UTF-8 -* checking package namespace information ... OK -* checking package dependencies ... ERROR -Package required but not available: ‘Biostrings’ - -Packages suggested but not available for checking: 'ggtree', 'seqmagick' - -See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’ -manual. -* DONE -Status: 1 ERROR - - - - - -``` -### CRAN - -``` -* using log directory ‘/tmp/workdir/ggmsa/old/ggmsa.Rcheck’ -* using R version 4.0.3 (2020-10-10) -* using platform: x86_64-pc-linux-gnu (64-bit) -* using session charset: UTF-8 -* using options ‘--no-manual --no-build-vignettes’ -* checking for file ‘ggmsa/DESCRIPTION’ ... OK -* this is package ‘ggmsa’ version ‘0.0.6’ -* package encoding: UTF-8 -* checking package namespace information ... OK -* checking package dependencies ... ERROR -Package required but not available: ‘Biostrings’ - -Packages suggested but not available for checking: 'ggtree', 'seqmagick' - -See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’ -manual. -* DONE -Status: 1 ERROR - - - - - -``` -# ggtern - -
- -* Version: 3.3.0 -* GitHub: NA -* Source code: https://github.com/cran/ggtern -* Date/Publication: 2020-04-11 14:50:05 UTC -* Number of recursive dependencies: 45 - -Run `cloud_details(, "ggtern")` for more info - -
- -## In both - -* checking whether package ‘ggtern’ can be installed ... ERROR - ``` - Installation failed. - See ‘/tmp/workdir/ggtern/new/ggtern.Rcheck/00install.out’ for details. - ``` - -* checking package dependencies ... NOTE - ``` - Package which this enhances but not available for checking: ‘sp’ - ``` - -## Installation - -### Devel - -``` -* installing *source* package ‘ggtern’ ... -** package ‘ggtern’ successfully unpacked and MD5 sums checked -** using staged installation -** R -** data -** demo -** inst -** byte-compile and prepare package for lazy loading -Error in get(x, envir = ns, inherits = FALSE) : - object 'try_require' not found -Error: unable to load R code in package ‘ggtern’ -Execution halted -ERROR: lazy loading failed for package ‘ggtern’ -* removing ‘/tmp/workdir/ggtern/new/ggtern.Rcheck/ggtern’ - - -``` -### CRAN - -``` -* installing *source* package ‘ggtern’ ... -** package ‘ggtern’ successfully unpacked and MD5 sums checked -** using staged installation -** R -** data -** demo -** inst -** byte-compile and prepare package for lazy loading -Error in get(x, envir = ns, inherits = FALSE) : - object 'try_require' not found -Error: unable to load R code in package ‘ggtern’ -Execution halted -ERROR: lazy loading failed for package ‘ggtern’ -* removing ‘/tmp/workdir/ggtern/old/ggtern.Rcheck/ggtern’ - - -``` -# glmmfields - -
- -* Version: 0.1.4 -* GitHub: https://github.com/seananderson/glmmfields -* Source code: https://github.com/cran/glmmfields -* Date/Publication: 2020-07-09 05:50:03 UTC -* Number of recursive dependencies: 95 - -Run `cloud_details(, "glmmfields")` for more info - -
- -## In both - -* checking whether package ‘glmmfields’ can be installed ... ERROR - ``` - Installation failed. - See ‘/tmp/workdir/glmmfields/new/glmmfields.Rcheck/00install.out’ for details. - ``` - -## Installation - -### Devel - -``` -* installing *source* package ‘glmmfields’ ... -** package ‘glmmfields’ successfully unpacked and MD5 sums checked -** using staged installation -** libs -"/opt/R/4.0.3/lib/R/bin/Rscript" -e "source(file.path('..', 'tools', 'make_cc.R')); make_cc(commandArgs(TRUE))" stan_files/glmmfields.stan -Wrote C++ file "stan_files/glmmfields.cc" - - -g++ -std=gnu++14 -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I"../inst/include" -I"/opt/R/4.0.3/lib/R/site-library/StanHeaders/include/src" -DBOOST_DISABLE_ASSERTS -DEIGEN_NO_DEBUG -DBOOST_MATH_OVERFLOW_ERROR_POLICY=errno_on_error -I'/opt/R/4.0.3/lib/R/site-library/BH/include' -I'/opt/R/4.0.3/lib/R/site-library/Rcpp/include' -I'/opt/R/4.0.3/lib/R/site-library/RcppEigen/include' -I'/opt/R/4.0.3/lib/R/site-library/rstan/include' -I'/opt/R/4.0.3/lib/R/site-library/StanHeaders/include' -I/usr/local/include -fpic -g -O2 -c stan_files/glmmfields.cc -o stan_files/glmmfields.o -In file included from /opt/R/4.0.3/lib/R/site-library/RcppEigen/include/Eigen/Core:397, -... -/opt/R/4.0.3/lib/R/site-library/RcppEigen/include/Eigen/src/Core/Product.h:132:22: required from ‘Eigen::internal::dense_product_base::operator const Scalar() const [with Lhs = Eigen::Product, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Transpose > >, Eigen::Matrix, 0>; Rhs = Eigen::Matrix; int Option = 0; Eigen::internal::dense_product_base::Scalar = double]’ -/opt/R/4.0.3/lib/R/site-library/StanHeaders/include/src/stan/mcmc/hmc/hamiltonians/dense_e_metric.hpp:23:56: required from ‘double stan::mcmc::dense_e_metric::T(stan::mcmc::dense_e_point&) [with Model = model_glmmfields_namespace::model_glmmfields; BaseRNG = boost::random::additive_combine_engine, boost::random::linear_congruential_engine >]’ -/opt/R/4.0.3/lib/R/site-library/StanHeaders/include/src/stan/mcmc/hmc/hamiltonians/dense_e_metric.hpp:22:10: required from here -/opt/R/4.0.3/lib/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:55:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__vector(2) double’} [-Wignored-attributes] -g++: fatal error: Killed signal terminated program cc1plus -compilation terminated. -make: *** [/opt/R/4.0.3/lib/R/etc/Makeconf:179: stan_files/glmmfields.o] Error 1 -rm stan_files/glmmfields.cc -ERROR: compilation failed for package ‘glmmfields’ -* removing ‘/tmp/workdir/glmmfields/new/glmmfields.Rcheck/glmmfields’ - - -``` -### CRAN - -``` -* installing *source* package ‘glmmfields’ ... -** package ‘glmmfields’ successfully unpacked and MD5 sums checked -** using staged installation -** libs -"/opt/R/4.0.3/lib/R/bin/Rscript" -e "source(file.path('..', 'tools', 'make_cc.R')); make_cc(commandArgs(TRUE))" stan_files/glmmfields.stan -Wrote C++ file "stan_files/glmmfields.cc" - - -g++ -std=gnu++14 -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I"../inst/include" -I"/opt/R/4.0.3/lib/R/site-library/StanHeaders/include/src" -DBOOST_DISABLE_ASSERTS -DEIGEN_NO_DEBUG -DBOOST_MATH_OVERFLOW_ERROR_POLICY=errno_on_error -I'/opt/R/4.0.3/lib/R/site-library/BH/include' -I'/opt/R/4.0.3/lib/R/site-library/Rcpp/include' -I'/opt/R/4.0.3/lib/R/site-library/RcppEigen/include' -I'/opt/R/4.0.3/lib/R/site-library/rstan/include' -I'/opt/R/4.0.3/lib/R/site-library/StanHeaders/include' -I/usr/local/include -fpic -g -O2 -c stan_files/glmmfields.cc -o stan_files/glmmfields.o -In file included from /opt/R/4.0.3/lib/R/site-library/RcppEigen/include/Eigen/Core:397, -... -/opt/R/4.0.3/lib/R/site-library/RcppEigen/include/Eigen/src/Core/Product.h:132:22: required from ‘Eigen::internal::dense_product_base::operator const Scalar() const [with Lhs = Eigen::Product, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Transpose > >, Eigen::Matrix, 0>; Rhs = Eigen::Matrix; int Option = 0; Eigen::internal::dense_product_base::Scalar = double]’ -/opt/R/4.0.3/lib/R/site-library/StanHeaders/include/src/stan/mcmc/hmc/hamiltonians/dense_e_metric.hpp:23:56: required from ‘double stan::mcmc::dense_e_metric::T(stan::mcmc::dense_e_point&) [with Model = model_glmmfields_namespace::model_glmmfields; BaseRNG = boost::random::additive_combine_engine, boost::random::linear_congruential_engine >]’ -/opt/R/4.0.3/lib/R/site-library/StanHeaders/include/src/stan/mcmc/hmc/hamiltonians/dense_e_metric.hpp:22:10: required from here -/opt/R/4.0.3/lib/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:55:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__vector(2) double’} [-Wignored-attributes] -g++: fatal error: Killed signal terminated program cc1plus -compilation terminated. -make: *** [/opt/R/4.0.3/lib/R/etc/Makeconf:179: stan_files/glmmfields.o] Error 1 -rm stan_files/glmmfields.cc -ERROR: compilation failed for package ‘glmmfields’ -* removing ‘/tmp/workdir/glmmfields/old/glmmfields.Rcheck/glmmfields’ - - -``` -# NA - -
- -* Version: NA -* GitHub: NA -* Source code: https://github.com/cran/NA -* Number of recursive dependencies: 0 - -Run `cloud_details(, "NA")` for more info - -
- -## Error before installation - -### Devel - -``` - - - - - - -``` -### CRAN - -``` - - - - - - -``` -# mcmcabn - -
- -* Version: 0.4 -* GitHub: NA -* Source code: https://github.com/cran/mcmcabn -* Date/Publication: 2021-06-02 06:10:01 UTC -* Number of recursive dependencies: 132 - -Run `cloud_details(, "mcmcabn")` for more info - -
- -## Error before installation - -### Devel - -``` -* using log directory ‘/tmp/workdir/mcmcabn/new/mcmcabn.Rcheck’ -* using R version 4.0.3 (2020-10-10) -* using platform: x86_64-pc-linux-gnu (64-bit) -* using session charset: UTF-8 -* using options ‘--no-manual --no-build-vignettes’ -* checking for file ‘mcmcabn/DESCRIPTION’ ... OK -* this is package ‘mcmcabn’ version ‘0.4’ -* package encoding: UTF-8 -* checking package namespace information ... OK -* checking package dependencies ... ERROR -Packages required but not available: 'gRbase', 'abn' - -See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’ -manual. -* DONE -Status: 1 ERROR - - - - - -``` -### CRAN - -``` -* using log directory ‘/tmp/workdir/mcmcabn/old/mcmcabn.Rcheck’ -* using R version 4.0.3 (2020-10-10) -* using platform: x86_64-pc-linux-gnu (64-bit) -* using session charset: UTF-8 -* using options ‘--no-manual --no-build-vignettes’ -* checking for file ‘mcmcabn/DESCRIPTION’ ... OK -* this is package ‘mcmcabn’ version ‘0.4’ -* package encoding: UTF-8 -* checking package namespace information ... OK -* checking package dependencies ... ERROR -Packages required but not available: 'gRbase', 'abn' - -See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’ -manual. -* DONE -Status: 1 ERROR - - - - - -``` -# NA - -
- -* Version: NA -* GitHub: NA -* Source code: https://github.com/cran/NA -* Number of recursive dependencies: 0 - -Run `cloud_details(, "NA")` for more info - -
- -## Error before installation - -### Devel - -``` - - - - - - -``` -### CRAN - -``` - - - - - - -``` -# metagam - -
- -* Version: 0.2.0 -* GitHub: https://github.com/Lifebrain/metagam -* Source code: https://github.com/cran/metagam -* Date/Publication: 2020-11-12 08:10:02 UTC -* Number of recursive dependencies: 145 - -Run `cloud_details(, "metagam")` for more info - -
- -## Error before installation - -### Devel - -``` -* using log directory ‘/tmp/workdir/metagam/new/metagam.Rcheck’ -* using R version 4.0.3 (2020-10-10) -* using platform: x86_64-pc-linux-gnu (64-bit) -* using session charset: UTF-8 -* using options ‘--no-manual --no-build-vignettes’ -* checking for file ‘metagam/DESCRIPTION’ ... OK -* checking extension type ... Package -* this is package ‘metagam’ version ‘0.2.0’ -* package encoding: UTF-8 -* checking package namespace information ... OK -* checking package dependencies ... ERROR -Package required but not available: ‘metap’ - -Package suggested but not available for checking: ‘multtest’ - -See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’ -manual. -* DONE -Status: 1 ERROR - - - - - -``` -### CRAN - -``` -* using log directory ‘/tmp/workdir/metagam/old/metagam.Rcheck’ -* using R version 4.0.3 (2020-10-10) -* using platform: x86_64-pc-linux-gnu (64-bit) -* using session charset: UTF-8 -* using options ‘--no-manual --no-build-vignettes’ -* checking for file ‘metagam/DESCRIPTION’ ... OK -* checking extension type ... Package -* this is package ‘metagam’ version ‘0.2.0’ -* package encoding: UTF-8 -* checking package namespace information ... OK -* checking package dependencies ... ERROR -Package required but not available: ‘metap’ - -Package suggested but not available for checking: ‘multtest’ - -See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’ -manual. -* DONE -Status: 1 ERROR - - - - - -``` -# MoMPCA - -
- -* Version: 1.0.1 -* GitHub: NA -* Source code: https://github.com/cran/MoMPCA -* Date/Publication: 2021-01-21 13:10:03 UTC -* Number of recursive dependencies: 82 - -Run `cloud_details(, "MoMPCA")` for more info - -
- -## Error before installation - -### Devel - -``` - - - - - - -``` -### CRAN - -``` -* using log directory ‘/tmp/workdir/MoMPCA/old/MoMPCA.Rcheck’ -* using R version 4.0.3 (2020-10-10) -* using platform: x86_64-pc-linux-gnu (64-bit) -* using session charset: UTF-8 -* using options ‘--no-manual --no-build-vignettes’ -* checking for file ‘MoMPCA/DESCRIPTION’ ... OK -* checking extension type ... Package -* this is package ‘MoMPCA’ version ‘1.0.1’ -* package encoding: UTF-8 -* checking package namespace information ... OK -... - Error: package or namespace load failed for ‘utils’: - .onLoad failed in loadNamespace() for 'utils', details: - call: system("uname -a", intern = TRUE) - error: cannot popen 'uname -a', probable reason 'Cannot allocate memory' - internal error -3 in R_decompress1 - 3: package ‘stats’ in options("defaultPackages") was not found - Killed -* checking for unstated dependencies in vignettes ... OK -* checking package vignettes in ‘inst/doc’ ... OK -* checking running R code from vignettes ... - - - - - -``` -# osmplotr - -
- -* Version: 0.3.3 -* GitHub: https://github.com/ropensci/osmplotr -* Source code: https://github.com/cran/osmplotr -* Date/Publication: 2021-03-28 00:10:03 UTC -* Number of recursive dependencies: 94 - -Run `cloud_details(, "osmplotr")` for more info - -
- -## Error before installation - -### Devel - -``` -* using log directory ‘/tmp/workdir/osmplotr/new/osmplotr.Rcheck’ -* using R version 4.0.3 (2020-10-10) -* using platform: x86_64-pc-linux-gnu (64-bit) -* using session charset: UTF-8 -* using options ‘--no-manual --no-build-vignettes’ -* checking for file ‘osmplotr/DESCRIPTION’ ... OK -* this is package ‘osmplotr’ version ‘0.3.3’ -* package encoding: UTF-8 -* checking package namespace information ... OK -* checking package dependencies ... ERROR -Package required but not available: ‘ggm’ - -See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’ -manual. -* DONE -Status: 1 ERROR - - - - - -``` -### CRAN - -``` -* using log directory ‘/tmp/workdir/osmplotr/old/osmplotr.Rcheck’ -* using R version 4.0.3 (2020-10-10) -* using platform: x86_64-pc-linux-gnu (64-bit) -* using session charset: UTF-8 -* using options ‘--no-manual --no-build-vignettes’ -* checking for file ‘osmplotr/DESCRIPTION’ ... OK -* this is package ‘osmplotr’ version ‘0.3.3’ -* package encoding: UTF-8 -* checking package namespace information ... OK -* checking package dependencies ... ERROR -Package required but not available: ‘ggm’ - -See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’ -manual. -* DONE -Status: 1 ERROR - - - - - -``` -# pcalg - -
- -* Version: 2.7-3 -* GitHub: NA -* Source code: https://github.com/cran/pcalg -* Date/Publication: 2021-06-01 08:30:02 UTC -* Number of recursive dependencies: 60 - -Run `cloud_details(, "pcalg")` for more info - -
- -## Error before installation - -### Devel - -``` -* using log directory ‘/tmp/workdir/pcalg/new/pcalg.Rcheck’ -* using R version 4.0.3 (2020-10-10) -* using platform: x86_64-pc-linux-gnu (64-bit) -* using session charset: UTF-8 -* using options ‘--no-manual --no-build-vignettes’ -* checking for file ‘pcalg/DESCRIPTION’ ... OK -* this is package ‘pcalg’ version ‘2.7-3’ -* package encoding: UTF-8 -* checking package namespace information ... OK -* checking package dependencies ... ERROR -Packages required but not available: 'graph', 'RBGL', 'ggm' - -Package suggested but not available for checking: ‘Rgraphviz’ - -See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’ -manual. -* DONE -Status: 1 ERROR - - - - - -``` -### CRAN - -``` -* using log directory ‘/tmp/workdir/pcalg/old/pcalg.Rcheck’ -* using R version 4.0.3 (2020-10-10) -* using platform: x86_64-pc-linux-gnu (64-bit) -* using session charset: UTF-8 -* using options ‘--no-manual --no-build-vignettes’ -* checking for file ‘pcalg/DESCRIPTION’ ... OK -* this is package ‘pcalg’ version ‘2.7-3’ -* package encoding: UTF-8 -* checking package namespace information ... OK -* checking package dependencies ... ERROR -Packages required but not available: 'graph', 'RBGL', 'ggm' - -Package suggested but not available for checking: ‘Rgraphviz’ - -See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’ -manual. -* DONE -Status: 1 ERROR - - - - - -``` -# penaltyLearning - -
- -* Version: 2020.5.13 -* GitHub: https://github.com/tdhock/penaltyLearning -* Source code: https://github.com/cran/penaltyLearning -* Date/Publication: 2020-05-14 16:20:02 UTC -* Number of recursive dependencies: 60 - -Run `cloud_details(, "penaltyLearning")` for more info - -
- -## Error before installation - -### Devel - -``` -* using log directory ‘/tmp/workdir/penaltyLearning/new/penaltyLearning.Rcheck’ -* using R version 4.0.3 (2020-10-10) -* using platform: x86_64-pc-linux-gnu (64-bit) -* using session charset: UTF-8 -* using options ‘--no-manual --no-build-vignettes’ -* checking for file ‘penaltyLearning/DESCRIPTION’ ... OK -* this is package ‘penaltyLearning’ version ‘2020.5.13’ -* checking package namespace information ... OK -* checking package dependencies ... NOTE -Package suggested but not available for checking: ‘jointseg’ -... -* checking for GNU extensions in Makefiles ... OK -* checking for portable use of $(BLAS_LIBS) and $(LAPACK_LIBS) ... OK -* checking use of PKG_*FLAGS in Makefiles ... OK -* checking compiled code ... OK -* checking examples ... OK -* checking for unstated dependencies in ‘tests’ ... OK -* checking tests ... OK - Running ‘testthat.R’ -* DONE -Status: 1 NOTE - - - - - -``` -### CRAN - -``` -* using log directory ‘/tmp/workdir/penaltyLearning/old/penaltyLearning.Rcheck’ -* using R version 4.0.3 (2020-10-10) -* using platform: x86_64-pc-linux-gnu (64-bit) -* using session charset: UTF-8 -* using options ‘--no-manual --no-build-vignettes’ -* checking for file ‘penaltyLearning/DESCRIPTION’ ... OK -* this is package ‘penaltyLearning’ version ‘2020.5.13’ -* checking package namespace information ... OK -* checking package dependencies ... NOTE -Package suggested but not available for checking: ‘jointseg’ -... -* checking for GNU extensions in Makefiles ... OK -* checking for portable use of $(BLAS_LIBS) and $(LAPACK_LIBS) ... OK -* checking use of PKG_*FLAGS in Makefiles ... OK -* checking compiled code ... OK -* checking examples ... OK -* checking for unstated dependencies in ‘tests’ ... OK -* checking tests ... OK - Running ‘testthat.R’ -* DONE -Status: 1 NOTE - - - - - -``` -# phylopath - -
- -* Version: 1.1.2 -* GitHub: https://github.com/Ax3man/phylopath -* Source code: https://github.com/cran/phylopath -* Date/Publication: 2019-12-07 01:10:07 UTC -* Number of recursive dependencies: 90 - -Run `cloud_details(, "phylopath")` for more info - -
- -## Error before installation - -### Devel - -``` -* using log directory ‘/tmp/workdir/phylopath/new/phylopath.Rcheck’ -* using R version 4.0.3 (2020-10-10) -* using platform: x86_64-pc-linux-gnu (64-bit) -* using session charset: UTF-8 -* using options ‘--no-manual --no-build-vignettes’ -* checking for file ‘phylopath/DESCRIPTION’ ... OK -* checking extension type ... Package -* this is package ‘phylopath’ version ‘1.1.2’ -* checking package namespace information ... OK -* checking package dependencies ... ERROR -Package required but not available: ‘ggm’ - -See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’ -manual. -* DONE -Status: 1 ERROR - - - - - -``` -### CRAN - -``` -* using log directory ‘/tmp/workdir/phylopath/old/phylopath.Rcheck’ -* using R version 4.0.3 (2020-10-10) -* using platform: x86_64-pc-linux-gnu (64-bit) -* using session charset: UTF-8 -* using options ‘--no-manual --no-build-vignettes’ -* checking for file ‘phylopath/DESCRIPTION’ ... OK -* checking extension type ... Package -* this is package ‘phylopath’ version ‘1.1.2’ -* checking package namespace information ... OK -* checking package dependencies ... ERROR -Package required but not available: ‘ggm’ - -See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’ -manual. -* DONE -Status: 1 ERROR - - - - - -``` -# NA - -
- -* Version: NA -* GitHub: NA -* Source code: https://github.com/cran/NA -* Number of recursive dependencies: 0 - -Run `cloud_details(, "NA")` for more info - -
- -## Error before installation - -### Devel - -``` - - - - - - -``` -### CRAN - -``` - - - - - - -``` -# rabhit - -
- -* Version: 0.1.5 -* GitHub: NA -* Source code: https://github.com/cran/rabhit -* Date/Publication: 2020-07-11 22:40:02 UTC -* Number of recursive dependencies: 123 - -Run `cloud_details(, "rabhit")` for more info - -
- -## Error before installation - -### Devel - -``` -* using log directory ‘/tmp/workdir/rabhit/new/rabhit.Rcheck’ -* using R version 4.0.3 (2020-10-10) -* using platform: x86_64-pc-linux-gnu (64-bit) -* using session charset: UTF-8 -* using options ‘--no-manual --no-build-vignettes’ -* checking for file ‘rabhit/DESCRIPTION’ ... OK -* checking extension type ... Package -* this is package ‘rabhit’ version ‘0.1.5’ -* package encoding: UTF-8 -* checking package namespace information ... OK -* checking package dependencies ... ERROR -Packages required but not available: 'alakazam', 'tigger' - -See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’ -manual. -* DONE -Status: 1 ERROR - - - - - -``` -### CRAN - -``` -* using log directory ‘/tmp/workdir/rabhit/old/rabhit.Rcheck’ -* using R version 4.0.3 (2020-10-10) -* using platform: x86_64-pc-linux-gnu (64-bit) -* using session charset: UTF-8 -* using options ‘--no-manual --no-build-vignettes’ -* checking for file ‘rabhit/DESCRIPTION’ ... OK -* checking extension type ... Package -* this is package ‘rabhit’ version ‘0.1.5’ -* package encoding: UTF-8 -* checking package namespace information ... OK -* checking package dependencies ... ERROR -Packages required but not available: 'alakazam', 'tigger' - -See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’ -manual. -* DONE -Status: 1 ERROR - - - - - -``` -# raw - -
- -* Version: 0.1.8 -* GitHub: NA -* Source code: https://github.com/cran/raw -* Date/Publication: 2021-02-05 15:40:03 UTC -* Number of recursive dependencies: 160 - -Run `cloud_details(, "raw")` for more info - -
- -## Error before installation - -### Devel - -``` -* using log directory ‘/tmp/workdir/raw/new/raw.Rcheck’ -* using R version 4.0.3 (2020-10-10) -* using platform: x86_64-pc-linux-gnu (64-bit) -* using session charset: UTF-8 -* using options ‘--no-manual --no-build-vignettes’ -* checking for file ‘raw/DESCRIPTION’ ... OK -* checking extension type ... Package -* this is package ‘raw’ version ‘0.1.8’ -* package encoding: UTF-8 -* checking package namespace information ... OK -... -* checking installed files from ‘inst/doc’ ... OK -* checking files in ‘vignettes’ ... OK -* checking examples ... OK -* checking for unstated dependencies in vignettes ... OK -* checking package vignettes in ‘inst/doc’ ... OK -* checking running R code from vignettes ... NONE - ‘raw.Rmd’ using ‘UTF-8’... OK -* checking re-building of vignette outputs ... SKIPPED -* DONE -Status: 1 NOTE - - - - - -``` -### CRAN - -``` -* using log directory ‘/tmp/workdir/raw/old/raw.Rcheck’ -* using R version 4.0.3 (2020-10-10) -* using platform: x86_64-pc-linux-gnu (64-bit) -* using session charset: UTF-8 -* using options ‘--no-manual --no-build-vignettes’ -* checking for file ‘raw/DESCRIPTION’ ... OK -* checking extension type ... Package -* this is package ‘raw’ version ‘0.1.8’ -* package encoding: UTF-8 -* checking package namespace information ... OK -... -* checking installed files from ‘inst/doc’ ... OK -* checking files in ‘vignettes’ ... OK -* checking examples ... OK -* checking for unstated dependencies in vignettes ... OK -* checking package vignettes in ‘inst/doc’ ... OK -* checking running R code from vignettes ... NONE - ‘raw.Rmd’ using ‘UTF-8’... OK -* checking re-building of vignette outputs ... SKIPPED -* DONE -Status: 1 NOTE - - - - - -``` -# rstap - -
- -* Version: 1.0.3 -* GitHub: https://github.com/biostatistics4socialimpact/rstap -* Source code: https://github.com/cran/rstap -* Date/Publication: 2019-02-06 20:30:03 UTC -* Number of recursive dependencies: 110 - -Run `cloud_details(, "rstap")` for more info - -
- -## In both - -* checking whether package ‘rstap’ can be installed ... ERROR - ``` - Installation failed. - See ‘/tmp/workdir/rstap/new/rstap.Rcheck/00install.out’ for details. - ``` - -## Installation - -### Devel - -``` -* installing *source* package ‘rstap’ ... -** package ‘rstap’ successfully unpacked and MD5 sums checked -** using staged installation -** libs -"/opt/R/4.0.3/lib/R/bin/Rscript" -e "source(file.path('..', 'tools', 'make_cc.R')); make_cc(commandArgs(TRUE))" stan_files/stap_binomial.stan -Wrote C++ file "stan_files/stap_binomial.cc" -g++ -std=gnu++14 -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I"../inst/include" -I"`"/opt/R/4.0.3/lib/R/bin/Rscript" --vanilla -e "cat(system.file('include', 'src', package = 'StanHeaders'))"`" -DBOOST_RESULT_OF_USE_TR1 -DBOOST_NO_DECLTYPE -DBOOST_DISABLE_ASSERTS -DEIGEN_NO_DEBUG -DBOOST_MATH_OVERFLOW_ERROR_POLICY=errno_on_error -I'/opt/R/4.0.3/lib/R/site-library/StanHeaders/include' -I'/opt/R/4.0.3/lib/R/site-library/rstan/include' -I'/opt/R/4.0.3/lib/R/site-library/BH/include' -I'/opt/R/4.0.3/lib/R/site-library/Rcpp/include' -I'/opt/R/4.0.3/lib/R/site-library/RcppEigen/include' -I/usr/local/include -fpic -g -O2 -c stan_files/stap_binomial.cc -o stan_files/stap_binomial.o -In file included from /opt/R/4.0.3/lib/R/site-library/RcppEigen/include/Eigen/Core:397, - from /opt/R/4.0.3/lib/R/site-library/RcppEigen/include/Eigen/Dense:1, - from /opt/R/4.0.3/lib/R/site-library/StanHeaders/include/stan/math/prim/mat/fun/Eigen.hpp:13, -... -/opt/R/4.0.3/lib/R/site-library/RcppEigen/include/Eigen/src/Core/Product.h:132:22: required from ‘Eigen::internal::dense_product_base::operator const Scalar() const [with Lhs = Eigen::Product, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Transpose > >, Eigen::Matrix, 0>; Rhs = Eigen::Matrix; int Option = 0; Eigen::internal::dense_product_base::Scalar = double]’ -/opt/R/4.0.3/lib/R/site-library/StanHeaders/include/src/stan/mcmc/hmc/hamiltonians/dense_e_metric.hpp:23:56: required from ‘double stan::mcmc::dense_e_metric::T(stan::mcmc::dense_e_point&) [with Model = model_stap_binomial_namespace::model_stap_binomial; BaseRNG = boost::random::additive_combine_engine, boost::random::linear_congruential_engine >]’ -/opt/R/4.0.3/lib/R/site-library/StanHeaders/include/src/stan/mcmc/hmc/hamiltonians/dense_e_metric.hpp:22:10: required from here -/opt/R/4.0.3/lib/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:55:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__vector(2) double’} [-Wignored-attributes] -g++: fatal error: Killed signal terminated program cc1plus -compilation terminated. -make: *** [/opt/R/4.0.3/lib/R/etc/Makeconf:179: stan_files/stap_binomial.o] Error 1 -rm stan_files/stap_binomial.cc -ERROR: compilation failed for package ‘rstap’ -* removing ‘/tmp/workdir/rstap/new/rstap.Rcheck/rstap’ - - -``` -### CRAN - -``` -* installing *source* package ‘rstap’ ... -** package ‘rstap’ successfully unpacked and MD5 sums checked -** using staged installation -** libs -"/opt/R/4.0.3/lib/R/bin/Rscript" -e "source(file.path('..', 'tools', 'make_cc.R')); make_cc(commandArgs(TRUE))" stan_files/stap_binomial.stan -Wrote C++ file "stan_files/stap_binomial.cc" -g++ -std=gnu++14 -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I"../inst/include" -I"`"/opt/R/4.0.3/lib/R/bin/Rscript" --vanilla -e "cat(system.file('include', 'src', package = 'StanHeaders'))"`" -DBOOST_RESULT_OF_USE_TR1 -DBOOST_NO_DECLTYPE -DBOOST_DISABLE_ASSERTS -DEIGEN_NO_DEBUG -DBOOST_MATH_OVERFLOW_ERROR_POLICY=errno_on_error -I'/opt/R/4.0.3/lib/R/site-library/StanHeaders/include' -I'/opt/R/4.0.3/lib/R/site-library/rstan/include' -I'/opt/R/4.0.3/lib/R/site-library/BH/include' -I'/opt/R/4.0.3/lib/R/site-library/Rcpp/include' -I'/opt/R/4.0.3/lib/R/site-library/RcppEigen/include' -I/usr/local/include -fpic -g -O2 -c stan_files/stap_binomial.cc -o stan_files/stap_binomial.o -In file included from /opt/R/4.0.3/lib/R/site-library/RcppEigen/include/Eigen/Core:397, - from /opt/R/4.0.3/lib/R/site-library/RcppEigen/include/Eigen/Dense:1, - from /opt/R/4.0.3/lib/R/site-library/StanHeaders/include/stan/math/prim/mat/fun/Eigen.hpp:13, -... -/opt/R/4.0.3/lib/R/site-library/RcppEigen/include/Eigen/src/Core/Product.h:132:22: required from ‘Eigen::internal::dense_product_base::operator const Scalar() const [with Lhs = Eigen::Product, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Transpose > >, Eigen::Matrix, 0>; Rhs = Eigen::Matrix; int Option = 0; Eigen::internal::dense_product_base::Scalar = double]’ -/opt/R/4.0.3/lib/R/site-library/StanHeaders/include/src/stan/mcmc/hmc/hamiltonians/dense_e_metric.hpp:23:56: required from ‘double stan::mcmc::dense_e_metric::T(stan::mcmc::dense_e_point&) [with Model = model_stap_binomial_namespace::model_stap_binomial; BaseRNG = boost::random::additive_combine_engine, boost::random::linear_congruential_engine >]’ -/opt/R/4.0.3/lib/R/site-library/StanHeaders/include/src/stan/mcmc/hmc/hamiltonians/dense_e_metric.hpp:22:10: required from here -/opt/R/4.0.3/lib/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:55:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__vector(2) double’} [-Wignored-attributes] -g++: fatal error: Killed signal terminated program cc1plus -compilation terminated. -make: *** [/opt/R/4.0.3/lib/R/etc/Makeconf:179: stan_files/stap_binomial.o] Error 1 -rm stan_files/stap_binomial.cc -ERROR: compilation failed for package ‘rstap’ -* removing ‘/tmp/workdir/rstap/old/rstap.Rcheck/rstap’ - - -``` -# scoper - -
- -* Version: 1.1.0 -* GitHub: NA -* Source code: https://github.com/cran/scoper -* Date/Publication: 2020-08-10 21:50:02 UTC -* Number of recursive dependencies: 115 - -Run `cloud_details(, "scoper")` for more info - -
- -## Error before installation - -### Devel - -``` -* using log directory ‘/tmp/workdir/scoper/new/scoper.Rcheck’ -* using R version 4.0.3 (2020-10-10) -* using platform: x86_64-pc-linux-gnu (64-bit) -* using session charset: UTF-8 -* using options ‘--no-manual --no-build-vignettes’ -* checking for file ‘scoper/DESCRIPTION’ ... OK -* checking extension type ... Package -* this is package ‘scoper’ version ‘1.1.0’ -* package encoding: UTF-8 -* checking package namespace information ... OK -* checking package dependencies ... ERROR -Packages required but not available: 'alakazam', 'shazam' - -See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’ -manual. -* DONE -Status: 1 ERROR - - - - - -``` -### CRAN - -``` -* using log directory ‘/tmp/workdir/scoper/old/scoper.Rcheck’ -* using R version 4.0.3 (2020-10-10) -* using platform: x86_64-pc-linux-gnu (64-bit) -* using session charset: UTF-8 -* using options ‘--no-manual --no-build-vignettes’ -* checking for file ‘scoper/DESCRIPTION’ ... OK -* checking extension type ... Package -* this is package ‘scoper’ version ‘1.1.0’ -* package encoding: UTF-8 -* checking package namespace information ... OK -* checking package dependencies ... ERROR -Packages required but not available: 'alakazam', 'shazam' - -See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’ -manual. -* DONE -Status: 1 ERROR - - - - - -``` -# spectralAnalysis - -
- -* Version: 3.12.0 -* GitHub: NA -* Source code: https://github.com/cran/spectralAnalysis -* Date/Publication: 2018-06-12 14:30:39 UTC -* Number of recursive dependencies: 104 - -Run `cloud_details(, "spectralAnalysis")` for more info - -
- -## Error before installation - -### Devel - -``` -* using log directory ‘/tmp/workdir/spectralAnalysis/new/spectralAnalysis.Rcheck’ -* using R version 4.0.3 (2020-10-10) -* using platform: x86_64-pc-linux-gnu (64-bit) -* using session charset: UTF-8 -* using options ‘--no-manual --no-build-vignettes’ -* checking for file ‘spectralAnalysis/DESCRIPTION’ ... OK -* checking extension type ... Package -* this is package ‘spectralAnalysis’ version ‘3.12.0’ -* checking package namespace information ... OK -* checking package dependencies ... ERROR -Packages required but not available: 'BiocGenerics', 'NMF', 'hNMF' - -See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’ -manual. -* DONE -Status: 1 ERROR - - - - - -``` -### CRAN - -``` -* using log directory ‘/tmp/workdir/spectralAnalysis/old/spectralAnalysis.Rcheck’ -* using R version 4.0.3 (2020-10-10) -* using platform: x86_64-pc-linux-gnu (64-bit) -* using session charset: UTF-8 -* using options ‘--no-manual --no-build-vignettes’ -* checking for file ‘spectralAnalysis/DESCRIPTION’ ... OK -* checking extension type ... Package -* this is package ‘spectralAnalysis’ version ‘3.12.0’ -* checking package namespace information ... OK -* checking package dependencies ... ERROR -Packages required but not available: 'BiocGenerics', 'NMF', 'hNMF' - -See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’ -manual. -* DONE -Status: 1 ERROR - - - - - -``` -# NA - -
- -* Version: NA -* GitHub: NA -* Source code: https://github.com/cran/NA -* Number of recursive dependencies: 0 - -Run `cloud_details(, "NA")` for more info - -
- -## Error before installation - -### Devel - -``` - - - - - - -``` -### CRAN - -``` - - - - - - -``` -# StroupGLMM +# CausalImpact
-* Version: 0.1.0 -* GitHub: https://github.com/MYaseen208/StroupGLMM -* Source code: https://github.com/cran/StroupGLMM -* Date/Publication: 2016-04-19 01:00:56 -* Number of recursive dependencies: 108 +* Version: 1.2.7 +* GitHub: NA +* Source code: https://github.com/cran/CausalImpact +* Date/Publication: 2021-06-07 06:40:02 UTC +* Number of recursive dependencies: 72 -Run `cloud_details(, "StroupGLMM")` for more info +Run `cloud_details(, "CausalImpact")` for more info
@@ -2189,17 +17,16 @@ Run `cloud_details(, "StroupGLMM")` for more info ### Devel ``` -* using log directory ‘/tmp/workdir/StroupGLMM/new/StroupGLMM.Rcheck’ -* using R version 4.0.3 (2020-10-10) +* using log directory ‘/tmp/workdir/CausalImpact/new/CausalImpact.Rcheck’ +* using R version 4.1.1 (2021-08-10) * using platform: x86_64-pc-linux-gnu (64-bit) * using session charset: UTF-8 -* using options ‘--no-manual --no-build-vignettes’ -* checking for file ‘StroupGLMM/DESCRIPTION’ ... OK -* checking extension type ... Package -* this is package ‘StroupGLMM’ version ‘0.1.0’ +* using option ‘--no-manual’ +* checking for file ‘CausalImpact/DESCRIPTION’ ... OK +* this is package ‘CausalImpact’ version ‘1.2.7’ * checking package namespace information ... OK * checking package dependencies ... ERROR -Package required but not available: ‘mutoss’ +Packages required but not available: 'bsts', 'Boom' See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’ manual. @@ -2214,17 +41,16 @@ Status: 1 ERROR ### CRAN ``` -* using log directory ‘/tmp/workdir/StroupGLMM/old/StroupGLMM.Rcheck’ -* using R version 4.0.3 (2020-10-10) +* using log directory ‘/tmp/workdir/CausalImpact/old/CausalImpact.Rcheck’ +* using R version 4.1.1 (2021-08-10) * using platform: x86_64-pc-linux-gnu (64-bit) * using session charset: UTF-8 -* using options ‘--no-manual --no-build-vignettes’ -* checking for file ‘StroupGLMM/DESCRIPTION’ ... OK -* checking extension type ... Package -* this is package ‘StroupGLMM’ version ‘0.1.0’ +* using option ‘--no-manual’ +* checking for file ‘CausalImpact/DESCRIPTION’ ... OK +* this is package ‘CausalImpact’ version ‘1.2.7’ * checking package namespace information ... OK * checking package dependencies ... ERROR -Package required but not available: ‘mutoss’ +Packages required but not available: 'bsts', 'Boom' See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’ manual. @@ -2236,196 +62,95 @@ Status: 1 ERROR ``` -# superb +# ctsem
-* Version: 0.9.7.5 -* GitHub: https://github.com/dcousin3/superb -* Source code: https://github.com/cran/superb -* Date/Publication: 2021-06-23 04:10:02 UTC -* Number of recursive dependencies: 159 +* Version: 3.6.0 +* GitHub: https://github.com/cdriveraus/ctsem +* Source code: https://github.com/cran/ctsem +* Date/Publication: 2022-03-10 11:20:19 UTC +* Number of recursive dependencies: 125 -Run `cloud_details(, "superb")` for more info +Run `cloud_details(, "ctsem")` for more info
-## Error before installation - -### Devel - -``` -* using log directory ‘/tmp/workdir/superb/new/superb.Rcheck’ -* using R version 4.0.3 (2020-10-10) -* using platform: x86_64-pc-linux-gnu (64-bit) -* using session charset: UTF-8 -* using options ‘--no-manual --no-build-vignettes’ -* checking for file ‘superb/DESCRIPTION’ ... OK -* checking extension type ... Package -* this is package ‘superb’ version ‘0.9.7.5’ -* package encoding: UTF-8 -* checking package namespace information ... OK -* checking package dependencies ... ERROR -Package required but not available: ‘referenceIntervals’ - -See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’ -manual. -* DONE -Status: 1 ERROR - - - - - -``` -### CRAN - -``` -* using log directory ‘/tmp/workdir/superb/old/superb.Rcheck’ -* using R version 4.0.3 (2020-10-10) -* using platform: x86_64-pc-linux-gnu (64-bit) -* using session charset: UTF-8 -* using options ‘--no-manual --no-build-vignettes’ -* checking for file ‘superb/DESCRIPTION’ ... OK -* checking extension type ... Package -* this is package ‘superb’ version ‘0.9.7.5’ -* package encoding: UTF-8 -* checking package namespace information ... OK -* checking package dependencies ... ERROR -Package required but not available: ‘referenceIntervals’ - -See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’ -manual. -* DONE -Status: 1 ERROR - - - - - -``` -# SynthETIC - -
- -* Version: 1.0.0 -* GitHub: https://github.com/agi-lab/SynthETIC -* Source code: https://github.com/cran/SynthETIC -* Date/Publication: 2021-04-02 12:10:02 UTC -* Number of recursive dependencies: 106 - -Run `cloud_details(, "SynthETIC")` for more info +## In both -
+* checking whether package ‘ctsem’ can be installed ... ERROR + ``` + Installation failed. + See ‘/tmp/workdir/ctsem/new/ctsem.Rcheck/00install.out’ for details. + ``` -## Error before installation +## Installation ### Devel ``` -* using log directory ‘/tmp/workdir/SynthETIC/new/SynthETIC.Rcheck’ -* using R version 4.0.3 (2020-10-10) -* using platform: x86_64-pc-linux-gnu (64-bit) -* using session charset: UTF-8 -* using options ‘--no-manual --no-build-vignettes’ -* checking for file ‘SynthETIC/DESCRIPTION’ ... OK -* this is package ‘SynthETIC’ version ‘1.0.0’ -* package encoding: UTF-8 -* checking package namespace information ... OK -* checking package dependencies ... NOTE -... -* checking installed files from ‘inst/doc’ ... OK -* checking files in ‘vignettes’ ... OK -* checking examples ... OK -* checking for unstated dependencies in vignettes ... OK -* checking package vignettes in ‘inst/doc’ ... OK -* checking running R code from vignettes ... NONE - ‘SynthETIC-demo.Rmd’ using ‘UTF-8’... OK -* checking re-building of vignette outputs ... SKIPPED -* DONE -Status: 1 NOTE - - - - - -``` -### CRAN +* installing *source* package ‘ctsem’ ... +** package ‘ctsem’ successfully unpacked and MD5 sums checked +** using staged installation +** libs +"/opt/R/4.1.1/lib/R/bin/Rscript" -e "source(file.path('..', 'tools', 'make_cc.R')); make_cc(commandArgs(TRUE))" stan_files/ctsm.stan +DIAGNOSTIC(S) FROM PARSER: +Info: integer division implicitly rounds to integer. Found int division: d * d - d / 2 + Positive values rounded down, negative values rounded up or down in platform-dependent way. -``` -* using log directory ‘/tmp/workdir/SynthETIC/old/SynthETIC.Rcheck’ -* using R version 4.0.3 (2020-10-10) -* using platform: x86_64-pc-linux-gnu (64-bit) -* using session charset: UTF-8 -* using options ‘--no-manual --no-build-vignettes’ -* checking for file ‘SynthETIC/DESCRIPTION’ ... OK -* this is package ‘SynthETIC’ version ‘1.0.0’ -* package encoding: UTF-8 -* checking package namespace information ... OK -* checking package dependencies ... NOTE +Wrote C++ file "stan_files/ctsm.cc" ... -* checking installed files from ‘inst/doc’ ... OK -* checking files in ‘vignettes’ ... OK -* checking examples ... OK -* checking for unstated dependencies in vignettes ... OK -* checking package vignettes in ‘inst/doc’ ... OK -* checking running R code from vignettes ... NONE - ‘SynthETIC-demo.Rmd’ using ‘UTF-8’... OK -* checking re-building of vignette outputs ... SKIPPED -* DONE -Status: 1 NOTE - - - - - -``` -# NA - -
- -* Version: NA -* GitHub: NA -* Source code: https://github.com/cran/NA -* Number of recursive dependencies: 0 - -Run `cloud_details(, "NA")` for more info - -
- -## Error before installation - -### Devel - -``` - - - - +stan_files/ctsm.hpp: In member function ‘T__ model_ctsm_namespace::model_ctsm::log_prob(std::vector&, std::vector&, std::ostream*) const [with bool propto__ = false; bool jacobian__ = true; T__ = double]’: +stan_files/ctsm.hpp:2348:9: note: variable tracking size limit exceeded with ‘-fvar-tracking-assignments’, retrying without + 2348 | T__ log_prob(std::vector& params_r__, + | ^~~~~~~~ +g++: fatal error: Killed signal terminated program cc1plus +compilation terminated. +make: *** [/opt/R/4.1.1/lib/R/etc/Makeconf:175: stan_files/ctsm.o] Error 1 +rm stan_files/ctsm.cc +ERROR: compilation failed for package ‘ctsem’ +* removing ‘/tmp/workdir/ctsem/new/ctsem.Rcheck/ctsem’ ``` ### CRAN ``` +* installing *source* package ‘ctsem’ ... +** package ‘ctsem’ successfully unpacked and MD5 sums checked +** using staged installation +** libs +"/opt/R/4.1.1/lib/R/bin/Rscript" -e "source(file.path('..', 'tools', 'make_cc.R')); make_cc(commandArgs(TRUE))" stan_files/ctsm.stan +DIAGNOSTIC(S) FROM PARSER: +Info: integer division implicitly rounds to integer. Found int division: d * d - d / 2 + Positive values rounded down, negative values rounded up or down in platform-dependent way. - - - +Wrote C++ file "stan_files/ctsm.cc" +... +stan_files/ctsm.hpp: In member function ‘T__ model_ctsm_namespace::model_ctsm::log_prob(std::vector&, std::vector&, std::ostream*) const [with bool propto__ = false; bool jacobian__ = true; T__ = double]’: +stan_files/ctsm.hpp:2348:9: note: variable tracking size limit exceeded with ‘-fvar-tracking-assignments’, retrying without + 2348 | T__ log_prob(std::vector& params_r__, + | ^~~~~~~~ +g++: fatal error: Killed signal terminated program cc1plus +compilation terminated. +make: *** [/opt/R/4.1.1/lib/R/etc/Makeconf:175: stan_files/ctsm.o] Error 1 +rm stan_files/ctsm.cc +ERROR: compilation failed for package ‘ctsem’ +* removing ‘/tmp/workdir/ctsem/old/ctsem.Rcheck/ctsem’ ``` -# tigger +# loon.ggplot
-* Version: 1.0.0 -* GitHub: NA -* Source code: https://github.com/cran/tigger -* Date/Publication: 2020-05-13 05:10:03 UTC -* Number of recursive dependencies: 116 +* Version: 1.3.1 +* GitHub: https://github.com/great-northern-diver/loon.ggplot +* Source code: https://github.com/cran/loon.ggplot +* Date/Publication: 2022-02-07 21:50:06 UTC +* Number of recursive dependencies: 103 -Run `cloud_details(, "tigger")` for more info +Run `cloud_details(, "loon.ggplot")` for more info
@@ -2434,18 +159,20 @@ Run `cloud_details(, "tigger")` for more info ### Devel ``` -* using log directory ‘/tmp/workdir/tigger/new/tigger.Rcheck’ -* using R version 4.0.3 (2020-10-10) +* using log directory ‘/tmp/workdir/loon.ggplot/new/loon.ggplot.Rcheck’ +* using R version 4.1.1 (2021-08-10) * using platform: x86_64-pc-linux-gnu (64-bit) * using session charset: UTF-8 -* using options ‘--no-manual --no-build-vignettes’ -* checking for file ‘tigger/DESCRIPTION’ ... OK +* using option ‘--no-manual’ +* checking for file ‘loon.ggplot/DESCRIPTION’ ... OK * checking extension type ... Package -* this is package ‘tigger’ version ‘1.0.0’ +* this is package ‘loon.ggplot’ version ‘1.3.1’ * package encoding: UTF-8 * checking package namespace information ... OK * checking package dependencies ... ERROR -Packages required but not available: 'alakazam', 'shazam' +Package required but not available: ‘loon’ + +Package suggested but not available for checking: ‘zenplots’ See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’ manual. @@ -2460,18 +187,20 @@ Status: 1 ERROR ### CRAN ``` -* using log directory ‘/tmp/workdir/tigger/old/tigger.Rcheck’ -* using R version 4.0.3 (2020-10-10) +* using log directory ‘/tmp/workdir/loon.ggplot/old/loon.ggplot.Rcheck’ +* using R version 4.1.1 (2021-08-10) * using platform: x86_64-pc-linux-gnu (64-bit) * using session charset: UTF-8 -* using options ‘--no-manual --no-build-vignettes’ -* checking for file ‘tigger/DESCRIPTION’ ... OK +* using option ‘--no-manual’ +* checking for file ‘loon.ggplot/DESCRIPTION’ ... OK * checking extension type ... Package -* this is package ‘tigger’ version ‘1.0.0’ +* this is package ‘loon.ggplot’ version ‘1.3.1’ * package encoding: UTF-8 * checking package namespace information ... OK * checking package dependencies ... ERROR -Packages required but not available: 'alakazam', 'shazam' +Package required but not available: ‘loon’ + +Package suggested but not available for checking: ‘zenplots’ See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’ manual. @@ -2483,17 +212,17 @@ Status: 1 ERROR ``` -# trackr +# SSVS
-* Version: 0.10.7 -* GitHub: NA -* Source code: https://github.com/cran/trackr -* Date/Publication: 2021-05-24 14:50:02 UTC -* Number of recursive dependencies: 99 +* Version: 1.0.0 +* GitHub: https://github.com/sabainter/SSVS +* Source code: https://github.com/cran/SSVS +* Date/Publication: 2022-03-08 20:20:12 UTC +* Number of recursive dependencies: 100 -Run `cloud_details(, "trackr")` for more info +Run `cloud_details(, "SSVS")` for more info
@@ -2502,18 +231,17 @@ Run `cloud_details(, "trackr")` for more info ### Devel ``` -* using log directory ‘/tmp/workdir/trackr/new/trackr.Rcheck’ -* using R version 4.0.3 (2020-10-10) +* using log directory ‘/tmp/workdir/SSVS/new/SSVS.Rcheck’ +* using R version 4.1.1 (2021-08-10) * using platform: x86_64-pc-linux-gnu (64-bit) * using session charset: UTF-8 -* using options ‘--no-manual --no-build-vignettes’ -* checking for file ‘trackr/DESCRIPTION’ ... OK -* checking extension type ... Package -* this is package ‘trackr’ version ‘0.10.7’ +* using option ‘--no-manual’ +* checking for file ‘SSVS/DESCRIPTION’ ... OK +* this is package ‘SSVS’ version ‘1.0.0’ +* package encoding: UTF-8 * checking package namespace information ... OK * checking package dependencies ... ERROR -Packages required but not available: - 'histry', 'CodeDepends', 'rsolr', 'roprov' +Package required but not available: ‘BoomSpikeSlab’ See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’ manual. @@ -2528,18 +256,17 @@ Status: 1 ERROR ### CRAN ``` -* using log directory ‘/tmp/workdir/trackr/old/trackr.Rcheck’ -* using R version 4.0.3 (2020-10-10) +* using log directory ‘/tmp/workdir/SSVS/old/SSVS.Rcheck’ +* using R version 4.1.1 (2021-08-10) * using platform: x86_64-pc-linux-gnu (64-bit) * using session charset: UTF-8 -* using options ‘--no-manual --no-build-vignettes’ -* checking for file ‘trackr/DESCRIPTION’ ... OK -* checking extension type ... Package -* this is package ‘trackr’ version ‘0.10.7’ +* using option ‘--no-manual’ +* checking for file ‘SSVS/DESCRIPTION’ ... OK +* this is package ‘SSVS’ version ‘1.0.0’ +* package encoding: UTF-8 * checking package namespace information ... OK * checking package dependencies ... ERROR -Packages required but not available: - 'histry', 'CodeDepends', 'rsolr', 'roprov' +Package required but not available: ‘BoomSpikeSlab’ See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’ manual. @@ -2559,7 +286,7 @@ Status: 1 ERROR * GitHub: NA * Source code: https://github.com/cran/valse * Date/Publication: 2021-05-31 08:00:02 UTC -* Number of recursive dependencies: 54 +* Number of recursive dependencies: 53 Run `cloud_details(, "valse")` for more info @@ -2582,12 +309,12 @@ Run `cloud_details(, "valse")` for more info ** package ‘valse’ successfully unpacked and MD5 sums checked ** using staged installation ** libs -gcc -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c EMGLLF.c -o EMGLLF.o -gcc -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c EMGrank.c -o EMGrank.o -gcc -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c a.EMGLLF.c -o a.EMGLLF.o -gcc -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c a.EMGrank.c -o a.EMGrank.o -gcc -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c valse_init.c -o valse_init.o -Error in loadNamespace(name) : there is no package called ‘RcppGSL’ +gcc -I"/opt/R/4.1.1/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c EMGLLF.c -o EMGLLF.o +gcc -I"/opt/R/4.1.1/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c EMGrank.c -o EMGrank.o +gcc -I"/opt/R/4.1.1/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c a.EMGLLF.c -o a.EMGLLF.o +gcc -I"/opt/R/4.1.1/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c a.EMGrank.c -o a.EMGrank.o +gcc -I"/opt/R/4.1.1/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c valse_init.c -o valse_init.o +Error in loadNamespace(x) : there is no package called ‘RcppGSL’ ... *** installing help indices ** building package indices @@ -2609,12 +336,12 @@ ERROR: loading failed ** package ‘valse’ successfully unpacked and MD5 sums checked ** using staged installation ** libs -gcc -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c EMGLLF.c -o EMGLLF.o -gcc -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c EMGrank.c -o EMGrank.o -gcc -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c a.EMGLLF.c -o a.EMGLLF.o -gcc -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c a.EMGrank.c -o a.EMGrank.o -gcc -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c valse_init.c -o valse_init.o -Error in loadNamespace(name) : there is no package called ‘RcppGSL’ +gcc -I"/opt/R/4.1.1/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c EMGLLF.c -o EMGLLF.o +gcc -I"/opt/R/4.1.1/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c EMGrank.c -o EMGrank.o +gcc -I"/opt/R/4.1.1/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c a.EMGLLF.c -o a.EMGLLF.o +gcc -I"/opt/R/4.1.1/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c a.EMGrank.c -o a.EMGrank.o +gcc -I"/opt/R/4.1.1/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c valse_init.c -o valse_init.o +Error in loadNamespace(x) : there is no package called ‘RcppGSL’ ... *** installing help indices ** building package indices @@ -2633,11 +360,11 @@ ERROR: loading failed
-* Version: 0.1.0 +* Version: 0.2.3 * GitHub: NA * Source code: https://github.com/cran/vivid -* Date/Publication: 2021-04-09 09:10:02 UTC -* Number of recursive dependencies: 205 +* Date/Publication: 2021-11-20 01:30:02 UTC +* Number of recursive dependencies: 202 Run `cloud_details(, "vivid")` for more info @@ -2649,26 +376,26 @@ Run `cloud_details(, "vivid")` for more info ``` * using log directory ‘/tmp/workdir/vivid/new/vivid.Rcheck’ -* using R version 4.0.3 (2020-10-10) +* using R version 4.1.1 (2021-08-10) * using platform: x86_64-pc-linux-gnu (64-bit) * using session charset: UTF-8 -* using options ‘--no-manual --no-build-vignettes’ +* using option ‘--no-manual’ * checking for file ‘vivid/DESCRIPTION’ ... OK -* this is package ‘vivid’ version ‘0.1.0’ +* this is package ‘vivid’ version ‘0.2.3’ * package encoding: UTF-8 * checking package namespace information ... OK * checking package dependencies ... NOTE ... - Error: Test failures - Execution halted +* checking tests ... OK + Running ‘testthat.R’ * checking for unstated dependencies in vignettes ... OK * checking package vignettes in ‘inst/doc’ ... OK * checking running R code from vignettes ... NONE ‘vivid.Rmd’ using ‘UTF-8’... OK ‘vividQStart.Rmd’ using ‘UTF-8’... OK -* checking re-building of vignette outputs ... SKIPPED +* checking re-building of vignette outputs ... OK * DONE -Status: 1 ERROR, 2 NOTEs +Status: 2 NOTEs @@ -2679,172 +406,26 @@ Status: 1 ERROR, 2 NOTEs ``` * using log directory ‘/tmp/workdir/vivid/old/vivid.Rcheck’ -* using R version 4.0.3 (2020-10-10) +* using R version 4.1.1 (2021-08-10) * using platform: x86_64-pc-linux-gnu (64-bit) * using session charset: UTF-8 -* using options ‘--no-manual --no-build-vignettes’ +* using option ‘--no-manual’ * checking for file ‘vivid/DESCRIPTION’ ... OK -* this is package ‘vivid’ version ‘0.1.0’ +* this is package ‘vivid’ version ‘0.2.3’ * package encoding: UTF-8 * checking package namespace information ... OK * checking package dependencies ... NOTE ... - Error: Test failures - Execution halted +* checking tests ... OK + Running ‘testthat.R’ * checking for unstated dependencies in vignettes ... OK * checking package vignettes in ‘inst/doc’ ... OK * checking running R code from vignettes ... NONE ‘vivid.Rmd’ using ‘UTF-8’... OK ‘vividQStart.Rmd’ using ‘UTF-8’... OK -* checking re-building of vignette outputs ... SKIPPED -* DONE -Status: 1 ERROR, 2 NOTEs - - - - - -``` -# wrswoR - -
- -* Version: 1.1.1 -* GitHub: https://github.com/krlmlr/wrswoR -* Source code: https://github.com/cran/wrswoR -* Date/Publication: 2020-07-26 18:20:02 UTC -* Number of recursive dependencies: 133 - -Run `cloud_details(, "wrswoR")` for more info - -
- -## Error before installation - -### Devel - -``` -* using log directory ‘/tmp/workdir/wrswoR/new/wrswoR.Rcheck’ -* using R version 4.0.3 (2020-10-10) -* using platform: x86_64-pc-linux-gnu (64-bit) -* using session charset: UTF-8 -* using options ‘--no-manual --no-build-vignettes’ -* checking for file ‘wrswoR/DESCRIPTION’ ... OK -* checking extension type ... Package -* this is package ‘wrswoR’ version ‘1.1.1’ -* package encoding: UTF-8 -* checking package namespace information ... OK -... -* checking for GNU extensions in Makefiles ... OK -* checking for portable use of $(BLAS_LIBS) and $(LAPACK_LIBS) ... OK -* checking use of PKG_*FLAGS in Makefiles ... OK -* checking compiled code ... OK -* checking examples ... OK -* checking for unstated dependencies in ‘tests’ ... OK -* checking tests ... OK - Running ‘testthat.R’ -* DONE -Status: 1 NOTE - - - - - -``` -### CRAN - -``` -* using log directory ‘/tmp/workdir/wrswoR/old/wrswoR.Rcheck’ -* using R version 4.0.3 (2020-10-10) -* using platform: x86_64-pc-linux-gnu (64-bit) -* using session charset: UTF-8 -* using options ‘--no-manual --no-build-vignettes’ -* checking for file ‘wrswoR/DESCRIPTION’ ... OK -* checking extension type ... Package -* this is package ‘wrswoR’ version ‘1.1.1’ -* package encoding: UTF-8 -* checking package namespace information ... OK -... -* checking for GNU extensions in Makefiles ... OK -* checking for portable use of $(BLAS_LIBS) and $(LAPACK_LIBS) ... OK -* checking use of PKG_*FLAGS in Makefiles ... OK -* checking compiled code ... OK -* checking examples ... OK -* checking for unstated dependencies in ‘tests’ ... OK -* checking tests ... OK - Running ‘testthat.R’ -* DONE -Status: 1 NOTE - - - - - -``` -# zenplots - -
- -* Version: 1.0.3 -* GitHub: https://github.com/great-northern-diver/zenplots -* Source code: https://github.com/cran/zenplots -* Date/Publication: 2020-11-28 18:10:03 UTC -* Number of recursive dependencies: 99 - -Run `cloud_details(, "zenplots")` for more info - -
- -## Error before installation - -### Devel - -``` -* using log directory ‘/tmp/workdir/zenplots/new/zenplots.Rcheck’ -* using R version 4.0.3 (2020-10-10) -* using platform: x86_64-pc-linux-gnu (64-bit) -* using session charset: UTF-8 -* using options ‘--no-manual --no-build-vignettes’ -* checking for file ‘zenplots/DESCRIPTION’ ... OK -* this is package ‘zenplots’ version ‘1.0.3’ -* package encoding: UTF-8 -* checking package namespace information ... OK -* checking package dependencies ... ERROR -Packages required but not available: 'loon', 'graph', 'PairViz' - -Package suggested but not available for checking: ‘Rgraphviz’ - -See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’ -manual. -* DONE -Status: 1 ERROR - - - - - -``` -### CRAN - -``` -* using log directory ‘/tmp/workdir/zenplots/old/zenplots.Rcheck’ -* using R version 4.0.3 (2020-10-10) -* using platform: x86_64-pc-linux-gnu (64-bit) -* using session charset: UTF-8 -* using options ‘--no-manual --no-build-vignettes’ -* checking for file ‘zenplots/DESCRIPTION’ ... OK -* this is package ‘zenplots’ version ‘1.0.3’ -* package encoding: UTF-8 -* checking package namespace information ... OK -* checking package dependencies ... ERROR -Packages required but not available: 'loon', 'graph', 'PairViz' - -Package suggested but not available for checking: ‘Rgraphviz’ - -See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’ -manual. +* checking re-building of vignette outputs ... OK * DONE -Status: 1 ERROR +Status: 2 NOTEs diff --git a/revdep/problems.md b/revdep/problems.md index 87d39ccc89..16b162b487 100644 --- a/revdep/problems.md +++ b/revdep/problems.md @@ -1,32 +1,74 @@ -# rvinecopulib +# eurlex
-* Version: 0.5.5.1.1 -* GitHub: https://github.com/vinecopulib/rvinecopulib -* Source code: https://github.com/cran/rvinecopulib -* Date/Publication: 2021-01-06 16:00:12 UTC -* Number of recursive dependencies: 72 +* Version: 0.4.1 +* GitHub: NA +* Source code: https://github.com/cran/eurlex +* Date/Publication: 2022-03-31 21:00:02 UTC +* Number of recursive dependencies: 96 -Run `cloud_details(, "rvinecopulib")` for more info +Run `cloud_details(, "eurlex")` for more info
## Newly broken -* checking installed package size ... NOTE +* checking re-building of vignette outputs ... WARNING ``` - installed size is 75.0Mb - sub-directories of 1Mb or more: - include 4.0Mb - libs 70.6Mb + Error(s) in re-building vignettes: + ... + --- re-building ‘eurlexpkg.Rmd’ using rmarkdown + + Attaching package: 'dplyr' + + The following objects are masked from 'package:stats': + + filter, lag + + ... + Quitting from lines 167-174 (eurlexpkg.Rmd) + Error: processing vignette 'eurlexpkg.Rmd' failed with diagnostics: + no applicable method for 'read_xml' applied to an object of class "NULL" + --- failed re-building ‘eurlexpkg.Rmd’ + + SUMMARY: processing the following file failed: + ‘eurlexpkg.Rmd’ + + Error: Vignette re-building failed. + Execution halted ``` -## Newly fixed +# gggrid -* checking whether package ‘rvinecopulib’ can be installed ... ERROR +
+ +* Version: 0.2-0 +* GitHub: https://github.com/pmur002/gggrid +* Source code: https://github.com/cran/gggrid +* Date/Publication: 2022-01-11 09:12:45 UTC +* Number of recursive dependencies: 52 + +Run `cloud_details(, "gggrid")` for more info + +
+ +## Newly broken + +* checking re-building of vignette outputs ... WARNING ``` - Installation failed. - See ‘/tmp/workdir/rvinecopulib/old/rvinecopulib.Rcheck/00install.out’ for details. + Error(s) in re-building vignettes: + ... + --- re-building ‘gggrid.Rmd’ using rmarkdown + Quitting from lines 129-142 (gggrid.Rmd) + Error: processing vignette 'gggrid.Rmd' failed with diagnostics: + $ operator is invalid for atomic vectors + --- failed re-building ‘gggrid.Rmd’ + + SUMMARY: processing the following file failed: + ‘gggrid.Rmd’ + + Error: Vignette re-building failed. + Execution halted ``` diff --git a/tests/testthat/test-data.r b/tests/testthat/test-data.r index a363479670..062d290cd6 100644 --- a/tests/testthat/test-data.r +++ b/tests/testthat/test-data.r @@ -1,4 +1,6 @@ -context("Data") +context("data") + +skip_if(getRversion() > "4.1") test_that("stringsAsFactors doesn't affect results", { old <- getOption("stringsAsFactors") From 5fce5478a899bdd0688339ec454e9fb221d63240 Mon Sep 17 00:00:00 2001 From: Thomas Lin Pedersen Date: Wed, 27 Apr 2022 09:42:13 +0200 Subject: [PATCH 5/7] Reapply #4574 --- R/guide-legend.r | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/R/guide-legend.r b/R/guide-legend.r index 4fe9eb2b62..7ecb2a0802 100644 --- a/R/guide-legend.r +++ b/R/guide-legend.r @@ -634,7 +634,7 @@ guide_gengrob.legend <- function(guide, theme) { draw_key <- function(i) { bg <- element_render(theme, "legend.key") keys <- lapply(guide$geoms, function(g) { - g$draw_key(g$data[i, ], g$params, key_size) + g$draw_key(g$data[i, , drop = FALSE], g$params, key_size) }) c(list(bg), keys) } From f191c1dadb428cc5b116bee121781613ca8488ec Mon Sep 17 00:00:00 2001 From: Thomas Lin Pedersen Date: Tue, 3 May 2022 10:49:52 +0200 Subject: [PATCH 6/7] submit to cran --- .Rbuildignore | 1 + 1 file changed, 1 insertion(+) diff --git a/.Rbuildignore b/.Rbuildignore index dbde8f70f3..1760e864ca 100644 --- a/.Rbuildignore +++ b/.Rbuildignore @@ -27,3 +27,4 @@ visual_test ^cran-comments\.md$ ^LICENSE\.md$ ^vignettes/articles$ +^CRAN-SUBMISSION$ From 643dc253a0e4984b5bb8286f0162639f28a4fbd7 Mon Sep 17 00:00:00 2001 From: Thomas Lin Pedersen Date: Tue, 3 May 2022 10:56:18 +0200 Subject: [PATCH 7/7] Increment version number to 3.3.6.9000 --- DESCRIPTION | 2 +- NEWS.md | 2 ++ 2 files changed, 3 insertions(+), 1 deletion(-) diff --git a/DESCRIPTION b/DESCRIPTION index f73f52b271..dd4b79a613 100644 --- a/DESCRIPTION +++ b/DESCRIPTION @@ -1,5 +1,5 @@ Package: ggplot2 -Version: 3.3.6 +Version: 3.3.6.9000 Title: Create Elegant Data Visualisations Using the Grammar of Graphics Description: A system for 'declaratively' creating graphics, based on "The Grammar of Graphics". You provide the data, tell 'ggplot2' diff --git a/NEWS.md b/NEWS.md index d91788dd38..c5d54fd883 100644 --- a/NEWS.md +++ b/NEWS.md @@ -1,3 +1,5 @@ +# ggplot2 (development version) + # ggplot2 3.3.6 This is a very small release only applying an internal change to comply with R 4.2 and its deprecation of `default.stringsAsFactors()`. There are no user