diff --git a/package-lock.json b/package-lock.json
index 1be352238..0efc9440c 100644
--- a/package-lock.json
+++ b/package-lock.json
@@ -831,9 +831,9 @@
       "dev": true
     },
     "@types/node": {
-      "version": "10.3.5",
-      "resolved": "https://registry.npmjs.org/@types/node/-/node-10.3.5.tgz",
-      "integrity": "sha512-6lRwZN0Y3TuglwaaZN2XPocobmzLlhxcqDjKFjNYSsXG/TFAGYkCqkzZh4+ms8iTHHQE6gJXLHPV7TziVGeWhg==",
+      "version": "10.5.1",
+      "resolved": "https://registry.npmjs.org/@types/node/-/node-10.5.1.tgz",
+      "integrity": "sha512-AFLl1IALIuyt6oK4AYZsgWVJ/5rnyzQWud7IebaZWWV3YmgtPZkQmYio9R5Ze/2pdd7XfqF5bP+hWS11mAKoOQ==",
       "dev": true
     },
     "@webassemblyjs/ast": {
@@ -4807,12 +4807,14 @@
         "balanced-match": {
           "version": "1.0.0",
           "bundled": true,
-          "dev": true
+          "dev": true,
+          "optional": true
         },
         "brace-expansion": {
           "version": "1.1.11",
           "bundled": true,
           "dev": true,
+          "optional": true,
           "requires": {
             "balanced-match": "^1.0.0",
             "concat-map": "0.0.1"
@@ -4832,7 +4834,8 @@
         "concat-map": {
           "version": "0.0.1",
           "bundled": true,
-          "dev": true
+          "dev": true,
+          "optional": true
         },
         "console-control-strings": {
           "version": "1.1.0",
@@ -10480,9 +10483,9 @@
       }
     },
     "rollup": {
-      "version": "0.61.2",
-      "resolved": "https://registry.npmjs.org/rollup/-/rollup-0.61.2.tgz",
-      "integrity": "sha512-NN7GaX3c9I3oz+CjEex7+JbnSxrLMTBXNRThI4qdN2Tq0K/7RiedlEzOHyuVAHPZKvQeoPiRioTWL3xhmN+oCg==",
+      "version": "0.62.0",
+      "resolved": "https://registry.npmjs.org/rollup/-/rollup-0.62.0.tgz",
+      "integrity": "sha512-mZS0aIGfYzuJySJD78znu9/hCJsNfBzg4lDuZGMj0hFVcYHt2evNRHv8aqiu9/w6z6Qn8AQoVl4iyEjDmisGeA==",
       "dev": true,
       "requires": {
         "@types/estree": "0.0.39",
diff --git a/package.json b/package.json
index 84c63b244..3527fd68b 100644
--- a/package.json
+++ b/package.json
@@ -39,7 +39,7 @@
     "lint-staged": "^7.0.4",
     "modular-css-core": "file:./packages/core",
     "pegjs": "^0.10.0",
-    "rollup": "^0.61.2",
+    "rollup": "^0.62.0",
     "rollup-plugin-svelte": "^4.1.0",
     "shelljs": "^0.8.1",
     "svelte": "^2.8.1",
diff --git a/packages/rollup/rollup.js b/packages/rollup/rollup.js
index 8f38b9138..66e6ec120 100644
--- a/packages/rollup/rollup.js
+++ b/packages/rollup/rollup.js
@@ -34,6 +34,8 @@ module.exports = function(opts) {
     const filter = utils.createFilter(options.include, options.exclude);
         
     const processor = options.processor || new Processor(options);
+
+    let runs = 0;
     
     return {
         name : "modular-css-rollup",
@@ -42,13 +44,20 @@ module.exports = function(opts) {
             if(!filter(id)) {
                 return null;
             }
-
+            
             // If the file is being re-processed we need to remove it to
             // avoid cache staleness issues
             if(id in processor.files) {
-                processor.dependencies(id)
-                    .concat(id)
-                    .forEach((file) => processor.remove(file));
+                let files = [ id ];
+                
+                // First time build should only remove the file and any files that depend on it
+                // but watchs update need to clear out the file, any files that depend on it,
+                // AND any files it depends on
+                if(runs) {
+                    files = processor.dependencies(id).concat(files);
+                }
+
+                files.forEach((file) => processor.remove(file));
             }
 
             return processor.string(id, code).then((result) => {
@@ -80,6 +89,11 @@ module.exports = function(opts) {
             });
         },
 
+        // Track # of runs since remove functionality needs to change
+        buildEnd() {
+            runs++;
+        },
+
         async generateBundle(outputOptions, bundles) {
             const usage = new Map();
             const common = new Map();
diff --git a/packages/rollup/test/__snapshots__/rollup.test.js.snap b/packages/rollup/test/__snapshots__/rollup.test.js.snap
index d0ffbf5e4..a65d9416e 100644
--- a/packages/rollup/test/__snapshots__/rollup.test.js.snap
+++ b/packages/rollup/test/__snapshots__/rollup.test.js.snap
@@ -247,6 +247,45 @@ console.log(css);
 }
 `;
 
+exports[`/rollup.js shouldn't over-remove files from an existing processor instance 1`] = `
+"var css = {
+    \\"a\\": \\"c a\\"
+};
+
+var css$1 = {
+    \\"b\\": \\"c b\\"
+};
+
+console.log(css, css$1);
+"
+`;
+
+exports[`/rollup.js shouldn't over-remove files from an existing processor instance 2`] = `
+"/* packages/rollup/test/specimens/repeated-references/a.css */
+.a {
+
+    color: red;
+}
+/* packages/rollup/test/specimens/repeated-references/b.css */
+.b {
+    
+    color: blue;
+}
+"
+`;
+
+exports[`/rollup.js shouldn't over-remove files from an existing processor instance 3`] = `
+"/* packages/rollup/test/specimens/repeated-references/d.css */
+.d {
+    color: darkblue;
+}
+/* packages/rollup/test/specimens/repeated-references/c.css */
+.c {
+    color: cadetblue;
+}
+"
+`;
+
 exports[`/rollup.js watch should correctly add new css files in watch mode when files change 1`] = `
 "/* packages/rollup/test/output/one.css */
 .mc19ef5610_one {
diff --git a/packages/rollup/test/rollup.test.js b/packages/rollup/test/rollup.test.js
index 5d3540380..89dd0ee07 100644
--- a/packages/rollup/test/rollup.test.js
+++ b/packages/rollup/test/rollup.test.js
@@ -299,7 +299,7 @@ describe("/rollup.js", () => {
         expect(read("dependencies/dependencies.js")).toMatchSnapshot();
         expect(read("dependencies/assets/dependencies.css")).toMatchSnapshot();
     });
-
+    
     it("should accept an existing processor instance", async () => {
         const processor = new Processor({
             namer,
@@ -333,6 +333,36 @@ describe("/rollup.js", () => {
         expect(read("existing-processor/assets/common.css")).toMatchSnapshot();
     });
 
+    it("shouldn't over-remove files from an existing processor instance", async () => {
+        const processor = new Processor({
+            namer,
+            map,
+        });
+
+        await processor.file(require.resolve("./specimens/repeated-references/b.css"));
+        
+        const bundle = await rollup({
+            input   : require.resolve("./specimens/repeated-references/a.js"),
+            plugins : [
+                plugin({
+                    processor,
+                }),
+            ],
+        });
+
+        await bundle.write({
+            format,
+            sourcemap,
+            assetFileNames,
+            
+            file : `${output}/repeated-references/repeated-references.js`,
+        });
+
+        expect(read("repeated-references/repeated-references.js")).toMatchSnapshot();
+        expect(read("repeated-references/assets/repeated-references.css")).toMatchSnapshot();
+        expect(read("repeated-references/assets/common.css")).toMatchSnapshot();
+    });
+
     describe("errors", () => {
         function checkError(err) {
             expect(err.toString()).toMatch("error-plugin:");
diff --git a/packages/rollup/test/specimens/repeated-references/a.css b/packages/rollup/test/specimens/repeated-references/a.css
new file mode 100644
index 000000000..02f54c7c1
--- /dev/null
+++ b/packages/rollup/test/specimens/repeated-references/a.css
@@ -0,0 +1,5 @@
+.a {
+    composes: c from "./c.css";
+
+    color: red;
+}
diff --git a/packages/rollup/test/specimens/repeated-references/a.js b/packages/rollup/test/specimens/repeated-references/a.js
new file mode 100644
index 000000000..8479cfd57
--- /dev/null
+++ b/packages/rollup/test/specimens/repeated-references/a.js
@@ -0,0 +1,4 @@
+import css from "./a.css";
+import b from "./b.js";
+
+console.log(css, b);
diff --git a/packages/rollup/test/specimens/repeated-references/b.css b/packages/rollup/test/specimens/repeated-references/b.css
new file mode 100644
index 000000000..37ce050fc
--- /dev/null
+++ b/packages/rollup/test/specimens/repeated-references/b.css
@@ -0,0 +1,5 @@
+.b {
+    composes: c from "./c.css";
+    
+    color: blue;
+}
diff --git a/packages/rollup/test/specimens/repeated-references/b.js b/packages/rollup/test/specimens/repeated-references/b.js
new file mode 100644
index 000000000..cc61d65d9
--- /dev/null
+++ b/packages/rollup/test/specimens/repeated-references/b.js
@@ -0,0 +1,3 @@
+import css from "./b.css";
+
+export default css;
diff --git a/packages/rollup/test/specimens/repeated-references/c.css b/packages/rollup/test/specimens/repeated-references/c.css
new file mode 100644
index 000000000..e38c48644
--- /dev/null
+++ b/packages/rollup/test/specimens/repeated-references/c.css
@@ -0,0 +1,7 @@
+.c {
+    color: cadetblue;
+}
+
+.other {
+    composes: d from "./d.css";
+}
diff --git a/packages/rollup/test/specimens/repeated-references/d.css b/packages/rollup/test/specimens/repeated-references/d.css
new file mode 100644
index 000000000..82df04199
--- /dev/null
+++ b/packages/rollup/test/specimens/repeated-references/d.css
@@ -0,0 +1,3 @@
+.d {
+    color: darkblue;
+}