diff --git a/.github/workflows/build-numpy-2.yml b/.github/workflows/build-numpy-2.yml index f7a2e49e8..6087793a8 100644 --- a/.github/workflows/build-numpy-2.yml +++ b/.github/workflows/build-numpy-2.yml @@ -11,7 +11,7 @@ jobs: runs-on: ubuntu-latest strategy: matrix: - python-version: ["3.10", "3.11"] + python-version: ["3.10", "3.11", "3.12"] steps: - uses: actions/checkout@v2 @@ -22,8 +22,7 @@ jobs: - name: Install dependencies run: | python -m pip install --upgrade pip - pip install -r requirements.txt -r requirements-dev.txt - pip install -U 'numpy<2.1' + pip install -r requirements-numpy2.txt -r requirements-numpy2-dev.txt - name: Run pre-commit uses: pre-commit/action@v2.0.0 - name: Test with pytest (numba jit disabled) diff --git a/requirements-numpy2-dev.txt b/requirements-numpy2-dev.txt new file mode 100644 index 000000000..1c00c7e5e --- /dev/null +++ b/requirements-numpy2-dev.txt @@ -0,0 +1,24 @@ +callee +pre-commit +pytest +pytest-cov +pytest-datadir +pytest-mock +hypothesis +scikit-allel +statsmodels +msprime>=1.0 +scikit-learn +partd +bed-reader +rechunker +cbgen > 1.0.5; platform_system != "Windows" +cbgen == 1.0.1; platform_system == "Windows" +cyvcf2; platform_system != "Windows" +yarl +matplotlib +asv +networkx +aiohttp +requests +graphviz diff --git a/requirements-numpy2.txt b/requirements-numpy2.txt new file mode 100644 index 000000000..491e63fb8 --- /dev/null +++ b/requirements-numpy2.txt @@ -0,0 +1,12 @@ +numpy < 2.1 +xarray +dask[array] >= 2023.01.0, <= 2024.8.0 +distributed >= 2023.01.0, <= 2024.8.0 +dask-ml +scipy +typing-extensions +numba +zarr >= 2.10.0, != 2.11.0, != 2.11.1, != 2.11.2, < 3 +fsspec != 2021.6.* +scikit-learn +pandas