From fff899d018d122c3f9143393d39b62c3eae97725 Mon Sep 17 00:00:00 2001 From: Tom White Date: Wed, 18 Dec 2024 14:56:59 +0000 Subject: [PATCH] Run popgen and windowing tests on Cubed --- .github/workflows/cubed.yml | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/.github/workflows/cubed.yml b/.github/workflows/cubed.yml index 0b3165fc..0535cce8 100644 --- a/.github/workflows/cubed.yml +++ b/.github/workflows/cubed.yml @@ -30,4 +30,4 @@ jobs: - name: Test with pytest run: | - pytest -v sgkit/tests/test_{aggregation,association,hwe,pca}.py -k 'test_count_call_alleles or test_gwas_linear_regression or test_hwep or test_sample_stats or (test_count_variant_alleles and not test_count_variant_alleles__chunked[call_genotype]) or (test_variant_stats and not test_variant_stats__chunks[chunks2-False]) or (test_pca__array_backend and tsqr)' --use-cubed \ No newline at end of file + pytest -v sgkit/tests/test_{aggregation,association,hwe,pca}.py -k 'test_count_call_alleles or test_gwas_linear_regression or test_hwep or test_popgen or test_sample_stats or (test_count_variant_alleles and not test_count_variant_alleles__chunked[call_genotype]) or (test_variant_stats and not test_variant_stats__chunks[chunks2-False]) or (test_pca__array_backend and tsqr) or test_window' --use-cubed \ No newline at end of file