A python package and a set of shell commands to handle GTF files

Retrieve annotated intron sequences and classify them as minor (U12-type) or major (U2-type) using a support vector-machine model.

Genome-wide detection of human variants that disrupt intronic branchpoints

U12-type intron prediction and file parsing utility in modern C++

Shiny Web app for automatic codon optimization based on codon usage in Strongyloides species, Pristionchus species, Brugia malayi, as well as user-provided custom codon lookup tables

Deep neural network for splice sites prediction

sam2irs is a program for calculating intron retention scores (IRS') using input in the sequence alignment/map (SAM) format.

Intron extraction procedure