Single-cell Transcriptome and Regulome Analysis Pipeline

Documentation of the Snakemake-Workflows project

A cookiecutter template for Snakemake workflows

Bioinformatic Analysis pipeLine for SomAtic Mutations In Cancer

StaG Metagenomic Workflow Collaboration

A workflow for creating small NGS test data sets, useful for continuous integration.

MetScale: snakemake workflows to scale metagenome analyses

🐍 Snakemake wrappers for bioinformatics.

A workflow to analyse sequence mutations in CRISPR-CAS9 targeted amplicon sequencing data

Pipeline for lncRNA, Circular RNA, and novel mRNA identification.

Pipeline to analyse ChIP-Rx data, i.e ChIP-Seq with reference exogenous genome spike-in normalization

Bioinformatics pipeline for nanopore sequencing data

Pipeline for analysis of Dropseq single cell data

Imputation workflow for low coverage whole genome sequencing data

Snakemake workflow to run transdecoder + trinotate

Scaling studies on high-performance clusters using Snakemake workflows

Snakemake pipeline for Popoolation and Popoolation2

The snakemake workflow for whole-exome sequencing analysis and generating vcf files

RBP module for bindz, a bioinformatics tool to detect regulators' binding sites on RNA sequences.

Snakemake pipeline for lncRNA discovery and quantification