Merge pull request #331 from trixi-framework/remove_taam

Remove Taam 😱
trixi-framework · Nov 13, 2020 · 99519ac · 99519ac
2 parents 930df46 + 12e68b0
commit 99519ac
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diff --git a/.codecov.yml b/.codecov.yml
@@ -1,13 +1,16 @@
 # https://docs.codecov.io/docs/codecovyml-reference
 
 # We have
-#   8 * [number of basic OS] + 2 * [number of additional OS]
+#   6 * [number of basic OS] + 2 * [number of additional OS]
+# with
+# [number of basic OS] = 1 (Linux)
+# [number of additional OS] = 2 (Windows, MacOS)
 # parallel jobs in ci.yml
 codecov:
   notify:
-    after_n_builds: 12
+    after_n_builds: 10
 comment:
-  after_n_builds: 12
+  after_n_builds: 10
 
 coverage:
   range: 70..95

diff --git a/.github/workflows/ci.yml b/.github/workflows/ci.yml
@@ -13,6 +13,7 @@ on:
       - '.github/workflows/CompatHelper.yml'
       - '.github/workflows/TagBot.yml'
       - 'docs/**'
+      - 'utils/**'
   pull_request:
     paths-ignore:
       - 'AUTHORS.md'
@@ -23,6 +24,7 @@ on:
       - '.github/workflows/CompatHelper.yml'
       - '.github/workflows/TagBot.yml'
       - 'docs/**'
+      - 'utils/**'
 
 jobs:
   test:
@@ -41,9 +43,7 @@ jobs:
           - x64
         trixi_test:
           - 2D
-          - 2D_OLD
           - 3D
-          - 3D_OLD
           - paper-self-gravitating-gas-dynamics
           - parallel_2d
           - 1D

diff --git a/Project.toml b/Project.toml
@@ -13,10 +13,7 @@ LinearMaps = "7a12625a-238d-50fd-b39a-03d52299707e"
 LoopVectorization = "bdcacae8-1622-11e9-2a5c-532679323890"
 MPI = "da04e1cc-30fd-572f-bb4f-1f8673147195"
 OffsetArrays = "6fe1bfb0-de20-5000-8ca7-80f57d26f881"
-Pkg = "44cfe95a-1eb2-52ea-b672-e2afdf69b78f"
 Printf = "de0858da-6303-5e67-8744-51eddeeeb8d7"
-Profile = "9abbd945-dff8-562f-b5e8-e1ebf5ef1b79"
-Random = "9a3f8284-a2c9-5f02-9a11-845980a1fd5c"
 StaticArrays = "90137ffa-7385-5640-81b9-e52037218182"
 TimerOutputs = "a759f4b9-e2f1-59dc-863e-4aeb61b1ea8f"
 Tullio = "bc48ee85-29a4-5162-ae0b-a64e1601d4bc"

diff --git a/README.md b/README.md
@@ -104,7 +104,7 @@ that can be opened with any image viewer:
 </p>
 
 The method `trixi_include(...)` expects a single string argument with the path to a
-Trixi elixir, i.e.. a text file containing Julia code necessary to set up and run a
+Trixi elixir, i.e., a text file containing Julia code necessary to set up and run a
 simulation. To quickly see Trixi in action, `default_example()`
 returns the path to an example elixir with a short, two-dimensional
 problem setup. A list of all example elixirs packaged with Trixi can be

diff --git a/docs/src/development.md b/docs/src/development.md
@@ -215,21 +215,13 @@ and especially helpful for novice programmers, it has a MATLAB-like
 appearance with easy and interactive access to the current variables, the
 help system, and a debugger.
 
-When using Juno's REPL to run Trixi, you cannot execute the `bin/trixi` script
-to start Trixi interactively. Instead, you can include the file `utils/juno.jl`,
-which will set the project path, load Revise (if installed), and import Trixi:
-```bash
-julia> include("utils/juno.jl")
-```
-Afterwards, you can start Trixi in the usual way by calling the `trixi_include` method.
-
 ### Vim or Emacs
 Vim and Emacs are both very popular editors that work great with Julia. One
 of their advantages is that they are text editors without a GUI and as such
 are available for almost any operating system. They also are preinstalled on
 virtually all Unix-like systems.  However, Vim and Emacs come with their own,
-steep learning curve if they have never been used before. Therfore, if in doubt, it
-is probably easier to get started with a classic GUI-based text edito (like
+steep learning curve if they have never been used before. Therefore, if in doubt, it
+is probably easier to get started with a classic GUI-based text editor (like
 Juno). If you decide to use Vim or Emacs, make sure that you install the
 corresponding Vim plugin
 [julia-vim](https://github.com/JuliaEditorSupport/julia-vim) or Emacs major

diff --git a/docs/src/index.md b/docs/src/index.md
@@ -163,7 +163,7 @@ julia> convergence_test(default_example(), 4)
 ```
 This will run a convergence test with the elixir `default_example()`,
 using four iterations with different initial refinement levels. The initial
-iteration will use the parameters file unchanged, while for each subsequent
+iteration will use the elixir unchanged, while for each subsequent
 iteration the `initial_refinement_level` parameter is incremented by one.
 Finally, the measured ``l^2`` and ``l^\infty`` errors and the determined EOCs
 will be displayed like this:

diff --git a/examples/1d/elixir_euler_source_terms.jl b/examples/1d/elixir_euler_source_terms.jl
@@ -43,7 +43,9 @@ save_restart = SaveRestartCallback(interval=100,
 
 analysis_interval = 100
 alive_callback = AliveCallback(analysis_interval=analysis_interval)
-analysis_callback = AnalysisCallback(semi, interval=analysis_interval)
+analysis_callback = AnalysisCallback(semi, interval=analysis_interval,
+                                     extra_analysis_errors=(:l2_error_primitive,
+                                                            :linf_error_primitive))
 
 callbacks = CallbackSet(summary_callback, stepsize_callback,
                         save_restart, save_solution,

diff --git a/examples/1d/parameters_advection_amr.toml b/examples/1d/parameters_advection_amr.toml
diff --git a/examples/1d/parameters_advection_amr_nonperiodic.toml b/examples/1d/parameters_advection_amr_nonperiodic.toml
diff --git a/examples/1d/parameters_advection_basic.toml b/examples/1d/parameters_advection_basic.toml
diff --git a/examples/1d/parameters_euler_blast_wave.toml b/examples/1d/parameters_euler_blast_wave.toml
diff --git a/examples/1d/parameters_euler_density_wave.toml b/examples/1d/parameters_euler_density_wave.toml
diff --git a/examples/1d/parameters_euler_ec.toml b/examples/1d/parameters_euler_ec.toml