Prettify summary output #333

sloede · 2020-11-13T12:55:33Z

Closes #302.

sloede · 2020-11-13T12:56:47Z

This is the current output:

julia> trixi_include("examples/2d/elixir_advection_amr.jl", tspan=(0.0, 0.1))

████████╗██████╗ ██╗██╗  ██╗██╗
╚══██╔══╝██╔══██╗██║╚██╗██╔╝██║
   ██║   ██████╔╝██║ ╚███╔╝ ██║
   ██║   ██╔══██╗██║ ██╔██╗ ██║
   ██║   ██║  ██║██║██╔╝ ██╗██║
   ╚═╝   ╚═╝  ╚═╝╚═╝╚═╝  ╚═╝╚═╝

┌──────────────────────────────────────────────────────────────────────────────┐
│ SemidiscretizationHyperbolic                                                 │
│ ════════════════════════════                                                 │
│ #spatial dimensions: …………… 2                                                 │
│ equations: ……………………………………… LinearScalarAdvectionEquation2D{Float64}          │
│ initial condition: ………………… initial_condition_gauss                           │
│ boundary conditions: …………… Trixi.BoundaryConditionPeriodic()                 │
│ source terms: ……………………………… nothing                                           │
│ solver: ……………………………………………… DG{Float64,LobattoLegend…,VolumeIntegralWeakForm} │
│ total #DOFs: ………………………………… 4096                                              │
└──────────────────────────────────────────────────────────────────────────────┘

┌──────────────────────────────────────────────────────────────────────────────┐
│ TreeMesh{2, Trixi.SerialTree{2}}                                             │
│ ════════════════════════════════                                             │
│ center: ……………………………………………… [0.0, 0.0]                                        │
│ length: ……………………………………………… 10.0                                              │
│ periodicity: ………………………………… (true, true)                                      │
│ current number of cells: … 341                                               │
│ maximum number of cells: … 30000                                             │
└──────────────────────────────────────────────────────────────────────────────┘

┌──────────────────────────────────────────────────────────────────────────────┐
│ LinearScalarAdvectionEquation2D                                              │
│ ═══════════════════════════════                                              │
│ #variables: …………………………………… 1                                                 │
│ │ variable 1: ……………………………… scalar                                            │
└──────────────────────────────────────────────────────────────────────────────┘

┌──────────────────────────────────────────────────────────────────────────────┐
│ DG{Float64}                                                                  │
│ ═══════════                                                                  │
│ basis: ………………………………………………… LobattoLegendreBasis{Float64}(polydeg=3)          │
│ mortar: ……………………………………………… LobattoLegendreMortarL2{Float64}(polydeg=3)       │
│ surface flux: ……………………………… flux_lax_friedrichs                               │
│ volume integral: ……………………… VolumeIntegralWeakForm()                          │
└──────────────────────────────────────────────────────────────────────────────┘

┌──────────────────────────────────────────────────────────────────────────────┐
│ AMRCallback                                                                  │
│ ═══════════                                                                  │
│ controller: …………………………………… ControllerThreeLevel(Ind…=0.1, max_threshold=0.6) │
│ interval: ………………………………………… 5                                                 │
│ adapt IC: ………………………………………… yes                                               │
│ │ only refine: …………………………… yes                                               │
└──────────────────────────────────────────────────────────────────────────────┘

┌──────────────────────────────────────────────────────────────────────────────┐
│ StepsizeCallback                                                             │
│ ════════════════                                                             │
│ CFL number: …………………………………… 1.6                                               │
└──────────────────────────────────────────────────────────────────────────────┘

┌──────────────────────────────────────────────────────────────────────────────┐
│ SaveRestartCallback                                                          │
│ ═══════════════════                                                          │
│ interval: ………………………………………… 100                                               │
│ save final solution: …………… yes                                               │
│ output directory: …………………… /home/mschlott/gdrive/wo…e/hackathon/Trixi.jl/out │
└──────────────────────────────────────────────────────────────────────────────┘

┌──────────────────────────────────────────────────────────────────────────────┐
│ SaveSolutionCallback                                                         │
│ ════════════════════                                                         │
│ interval: ………………………………………… 100                                               │
│ solution variables: ……………… primitive                                         │
│ save initial solution: ……… yes                                               │
│ save final solution: …………… yes                                               │
│ output directory: …………………… /home/mschlott/gdrive/wo…e/hackathon/Trixi.jl/out │
└──────────────────────────────────────────────────────────────────────────────┘

┌──────────────────────────────────────────────────────────────────────────────┐
│ AnalysisCallback                                                             │
│ ════════════════                                                             │
│ interval: ………………………………………… 100                                               │
│ analyzer: ………………………………………… LobattoLegendreAnalyzer{Float64}(polydeg=6)       │
│ │ error 1: ……………………………………… l2_error                                          │
│ │ error 2: ……………………………………… linf_error                                        │
│ │ integral 1: ……………………………… entropy_timederivative                            │
│ │ integral 2: ……………………………… entropy                                           │
│ save analysis to file: ……… no                                                │
└──────────────────────────────────────────────────────────────────────────────┘

┌──────────────────────────────────────────────────────────────────────────────┐
│ AliveCallback                                                                │
│ ═════════════                                                                │
│ interval: ………………………………………… 10                                                │
└──────────────────────────────────────────────────────────────────────────────┘

┌──────────────────────────────────────────────────────────────────────────────┐
│ Time integration                                                             │
│ ════════════════                                                             │
│ Start time: …………………………………… 0.0                                               │
│ Final time: …………………………………… 0.1                                               │
│ time integrator: ……………………… CarpenterKennedy2N54                              │
└──────────────────────────────────────────────────────────────────────────────┘

--------------------------------------------------------------------------------
 Simulation running 'LinearScalarAdvectionEquation2D' with polydeg = 3
--------------------------------------------------------------------------------
 #timesteps:                  0                run time:       1.71400000e-06 s
[...]

It would be great to get some feedback on this...

ranocha

Looks much cleaner than before! Nice work overall, @sloede 👍

src/callbacks/summary.jl

ranocha · 2020-11-13T13:30:38Z

Another minor comments/suggestion: What about printing Trixi.BoundaryConditionPeriodic() as boundary_condition_periodic?

codecov · 2020-11-13T13:33:41Z

Codecov Report

Merging #333 (95c7449) into dev (44c3797) will decrease coverage by 0.08%.
The diff coverage is 86.61%.

@@            Coverage Diff             @@
##              dev     #333      +/-   ##
==========================================
- Coverage   88.51%   88.43%   -0.09%     
==========================================
  Files          76       76              
  Lines        8793     8886      +93     
==========================================
+ Hits         7783     7858      +75     
- Misses       1010     1028      +18

Flag	Coverage Δ
unittests	`88.43% <86.61%> (-0.09%)`	⬇️

Flags with carried forward coverage won't be shown. Click here to find out more.

Impacted Files	Coverage Δ
src/basic_types.jl	`50.00% <0.00%> (-50.00%)`	⬇️
src/solvers/dg/indicators.jl	`46.66% <64.28%> (+0.37%)`	⬆️
src/callbacks_step/steady_state.jl	`71.42% <66.66%> (-1.30%)`	⬇️
src/mesh/mesh.jl	`80.32% <75.00%> (-0.93%)`	⬇️
src/callbacks_step/save_restart.jl	`92.30% <80.00%> (+0.87%)`	⬆️
src/callbacks_step/save_solution.jl	`95.45% <80.00%> (+0.45%)`	⬆️
src/callbacks_step/stepsize.jl	`94.28% <80.00%> (+0.73%)`	⬆️
src/solvers/dg/dg.jl	`90.58% <80.00%> (-4.80%)`	⬇️
src/callbacks_step/amr.jl	`83.10% <84.61%> (-0.31%)`	⬇️
src/equations/equations.jl	`84.00% <85.71%> (+5.05%)`	⬆️
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src/callbacks/alive.jl

ranocha · 2020-11-13T13:44:00Z

Some additional things coming to my mind:

SteadyStateCallback should also be adapted.
SemidiscretizationEulerGravity and ParametersEulerGravity should be adapted

It would be nice to adapt the output of the volume integral types. For example,

julia> trixi_include("examples/2d/elixir_euler_ec.jl")
[...]
┌──────────────────────────────────────────────────────────────────────────────┐
│ DG{Float64}                                                                  │
│ ═══════════                                                                  │
│ basis: ………………………………………………… LobattoLegendreBasis{Float64}(polydeg=3)          │
│ mortar: ……………………………………………… LobattoLegendreMortarL2{Float64}(polydeg=3)       │
│ surface flux: ……………………………… flux_chandrashekar                                │
│ volume integral: ……………………… VolumeIntegralFluxDiffer…rixi.flux_chandrashekar) │
└──────────────────────────────────────────────────────────────────────────────┘
[...]

is a bit too short. The same is true for shock capturing.

Should we also give a bit more information about the AMR controller?

sloede · 2020-11-13T13:57:19Z

Another minor comments/suggestion: What about printing Trixi.BoundaryConditionPeriodic() as boundary_condition_periodic?

Is this regarding the way it is shown in the summary callback or do you mean we should adapt/implement a show for BoundaryConditionPeriodic()?

ranocha · 2020-11-13T14:00:29Z

Is this regarding the way it is shown in the summary callback or do you mean we should adapt/implement a show for BoundaryConditionPeriodic()?

Isn't that basically the same? I observed how it was printed by the summary callback from the semidiscretization and thought it might be nice to print it using the exported version boundary_condition_periodic instead of the un-exported version Trixi.BoundaryConditionPeriodic().

sloede · 2020-11-13T16:45:35Z

SteadyStateCallback should also be adapted.

SemidiscretizationEulerGravity and ParametersEulerGravity should be adapted

It would be nice to adapt the output of the volume integral types. [...] The same is true for shock capturing.

Should we also give a bit more information about the AMR controller?

Yes, I fully agree. The first 2 are just missing, I'll see to that.

The other two are probably more difficult to achieve. If you have an idea for how to implement it, feel free to let me know. Otherwise, I will - as discussed today - try to think about a clean solution and if it amounts to nothing, postpone it.

sloede · 2020-11-14T05:03:12Z

SteadyStateCallback should also be adapted.

Done in ccd07f7

SemidiscretizationEulerGravity and ParametersEulerGravity should be adapted

Done in c7d5848

src/callbacks_step/summary.jl

Co-authored-by: Hendrik Ranocha <ranocha@users.noreply.github.com>

ranocha

Feel free to merge this and open an issue to improve the output of things like split-form & shock-capturing volume integral types or the AMR controller etc.

sloede · 2020-11-14T23:07:19Z

With the latest commit (e8ed070), we now get the following:

Nested output (`examples/2d/elixir_euler_blob_amr.jl`)

Volume integral

┌──────────────────────────────────────────────────────────────────────────────────────────────────┐
│ DG{Float64}                                                                                      │
│ ═══════════                                                                                      │
│ polynomial degree: ……………………………… 4                                                                │
│ basis: ……………………………………………………………… LobattoLegendreBasis{Float64}(polydeg=4)                         │
│ mortar: …………………………………………………………… LobattoLegendreMortarL2{Float64}(polydeg=4)                      │
│ surface flux: …………………………………………… flux_lax_friedrichs                                              │
│ volume integral: …………………………………… VolumeIntegralShockCapturingHG                                   │
│ │ volume flux DG: ………………………………… flux_chandrashekar                                               │
│ │ volume flux FV: ………………………………… flux_chandrashekar                                               │
│ │ indicator: ……………………………………………… IndicatorHennemannGassner                                        │
│ │ │ indicator variable: ………………… pressure                                                         │
│ │ │ max. α: ………………………………………………… 0.4                                                              │
│ │ │ min. α: ………………………………………………… 0.0001                                                           │
│ │ │ α smoothing: …………………………………… yes                                                              │
└──────────────────────────────────────────────────────────────────────────────────────────────────┘

AMR

┌──────────────────────────────────────────────────────────────────────────────────────────────────┐
│ AMRCallback                                                                                      │
│ ═══════════                                                                                      │
│ controller: ………………………………………………… ControllerThreeLevelCombined                                     │
│ │ primary indicator: ………………………… IndicatorHennemannGassner                                        │
│ │ │ indicator variable: ………………… density                                                          │
│ │ │ max. α: ………………………………………………… 1.0                                                              │
│ │ │ min. α: ………………………………………………… 0.0001                                                           │
│ │ │ α smoothing: …………………………………… no                                                               │
│ │ secondary indicator: …………………… IndicatorHennemannGassner                                        │
│ │ │ indicator variable: ………………… pressure                                                         │
│ │ │ max. α: ………………………………………………… 0.4                                                              │
│ │ │ min. α: ………………………………………………… 0.0001                                                           │
│ │ │ α smoothing: …………………………………… yes                                                              │
│ │ base_level: …………………………………………… 4                                                                │
│ │ med_level: ……………………………………………… 0                                                                │
│ │ max_level: ……………………………………………… 7                                                                │
│ │ med_threshold: …………………………………… 0.0003                                                           │
│ │ max_threshold: …………………………………… 0.003                                                            │
│ │ max_threshold_secondary: ………… 0.4                                                              │
│ interval: ……………………………………………………… 1                                                                │
│ adapt IC: ……………………………………………………… yes                                                              │
│ │ only refine: ………………………………………… yes                                                              │
└──────────────────────────────────────────────────────────────────────────────────────────────────┘

Boundary conditions (`examples/2d/elixir_hypdiff_nonperiodic.jl`)

┌──────────────────────────────────────────────────────────────────────────────────────────────────┐
│ SemidiscretizationHyperbolic                                                                     │
│ ════════════════════════════                                                                     │
│ #spatial dimensions: ………………………… 2                                                                │
│ equations: …………………………………………………… HyperbolicDiffusionEquations2D                                   │
│ initial condition: ……………………………… initial_condition_poisson_nonperiodic                            │
│ boundary conditions: ………………………… 4                                                                │
│ │ negative x: …………………………………………… boundary_condition_poisson_nonperiodic                           │
│ │ positive x: …………………………………………… boundary_condition_poisson_nonperiodic                           │
│ │ negative y: …………………………………………… BoundaryConditionPeriodic()                                      │
│ │ positive y: …………………………………………… BoundaryConditionPeriodic()                                      │
│ source terms: …………………………………………… source_terms_poisson_nonperiodic                                 │
│ solver: …………………………………………………………… DG                                                               │
│ total #DOFs: ……………………………………………… 1600                                                             │
└──────────────────────────────────────────────────────────────────────────────────────────────────┘

For reference, here is the output from the example above:

Click to expand

julia> trixi_include("examples/2d/elixir_advection_amr.jl", tspan=(0.0, 1.1))

████████╗██████╗ ██╗██╗  ██╗██╗
╚══██╔══╝██╔══██╗██║╚██╗██╔╝██║
   ██║   ██████╔╝██║ ╚███╔╝ ██║
   ██║   ██╔══██╗██║ ██╔██╗ ██║
   ██║   ██║  ██║██║██╔╝ ██╗██║
   ╚═╝   ╚═╝  ╚═╝╚═╝╚═╝  ╚═╝╚═╝

┌──────────────────────────────────────────────────────────────────────────────────────────────────┐
│ SemidiscretizationHyperbolic                                                                     │
│ ════════════════════════════                                                                     │
│ #spatial dimensions: ………………………… 2                                                                │
│ equations: …………………………………………………… LinearScalarAdvectionEquation2D                                  │
│ initial condition: ……………………………… initial_condition_gauss                                          │
│ boundary conditions: ………………………… 4                                                                │
│ │ negative x: …………………………………………… BoundaryConditionPeriodic()                                      │
│ │ positive x: …………………………………………… BoundaryConditionPeriodic()                                      │
│ │ negative y: …………………………………………… BoundaryConditionPeriodic()                                      │
│ │ positive y: …………………………………………… BoundaryConditionPeriodic()                                      │
│ source terms: …………………………………………… nothing                                                          │
│ solver: …………………………………………………………… DG                                                               │
│ total #DOFs: ……………………………………………… 4096                                                             │
└──────────────────────────────────────────────────────────────────────────────────────────────────┘

┌──────────────────────────────────────────────────────────────────────────────────────────────────┐
│ TreeMesh{2, Trixi.SerialTree{2}}                                                                 │
│ ════════════════════════════════                                                                 │
│ center: …………………………………………………………… [0.0, 0.0]                                                       │
│ length: …………………………………………………………… 10.0                                                             │
│ periodicity: ……………………………………………… (true, true)                                                     │
│ current #cells: ……………………………………… 341                                                              │
│ maximum #cells: ……………………………………… 30000                                                            │
└──────────────────────────────────────────────────────────────────────────────────────────────────┘

┌──────────────────────────────────────────────────────────────────────────────────────────────────┐
│ LinearScalarAdvectionEquation2D                                                                  │
│ ═══════════════════════════════                                                                  │
│ #variables : ……………………………………………… 1                                                                │
│ │ variable 1: …………………………………………… scalar                                                           │
└──────────────────────────────────────────────────────────────────────────────────────────────────┘

┌──────────────────────────────────────────────────────────────────────────────────────────────────┐
│ DG{Float64}                                                                                      │
│ ═══════════                                                                                      │
│ polynomial degree: ……………………………… 3                                                                │
│ basis: ……………………………………………………………… LobattoLegendreBasis{Float64}(polydeg=3)                         │
│ mortar: …………………………………………………………… LobattoLegendreMortarL2{Float64}(polydeg=3)                      │
│ surface flux: …………………………………………… flux_lax_friedrichs                                              │
│ volume integral: …………………………………… VolumeIntegralWeakForm                                           │
└──────────────────────────────────────────────────────────────────────────────────────────────────┘

┌──────────────────────────────────────────────────────────────────────────────────────────────────┐
│ AMRCallback                                                                                      │
│ ═══════════                                                                                      │
│ controller: ………………………………………………… ControllerThreeLevel                                             │
│ │ indicator: ……………………………………………… IndicatorMax                                                     │
│ │ │ indicator variable: ………………… first                                                            │
│ │ base_level: …………………………………………… 4                                                                │
│ │ med_level: ……………………………………………… 5                                                                │
│ │ max_level: ……………………………………………… 6                                                                │
│ │ med_threshold: …………………………………… 0.1                                                              │
│ │ max_threshold: …………………………………… 0.6                                                              │
│ interval: ……………………………………………………… 5                                                                │
│ adapt IC: ……………………………………………………… yes                                                              │
│ │ only refine: ………………………………………… yes                                                              │
└──────────────────────────────────────────────────────────────────────────────────────────────────┘

┌──────────────────────────────────────────────────────────────────────────────────────────────────┐
│ StepsizeCallback                                                                                 │
│ ════════════════                                                                                 │
│ CFL number: ………………………………………………… 1.6                                                              │
└──────────────────────────────────────────────────────────────────────────────────────────────────┘

┌──────────────────────────────────────────────────────────────────────────────────────────────────┐
│ SaveRestartCallback                                                                              │
│ ═══════════════════                                                                              │
│ interval: ……………………………………………………… 100                                                              │
│ save final solution: ………………………… yes                                                              │
│ output directory: ………………………………… /home/mschlott/gdrive/work/code/hackathon/Trixi.jl/out           │
└──────────────────────────────────────────────────────────────────────────────────────────────────┘

┌──────────────────────────────────────────────────────────────────────────────────────────────────┐
│ SaveSolutionCallback                                                                             │
│ ════════════════════                                                                             │
│ interval: ……………………………………………………… 100                                                              │
│ solution variables: …………………………… primitive                                                        │
│ save initial solution: …………………… yes                                                              │
│ save final solution: ………………………… yes                                                              │
│ output directory: ………………………………… /home/mschlott/gdrive/work/code/hackathon/Trixi.jl/out           │
└──────────────────────────────────────────────────────────────────────────────────────────────────┘

┌──────────────────────────────────────────────────────────────────────────────────────────────────┐
│ AnalysisCallback                                                                                 │
│ ════════════════                                                                                 │
│ interval: ……………………………………………………… 100                                                              │
│ analyzer: ……………………………………………………… LobattoLegendreAnalyzer{Float64}(polydeg=6)                      │
│ │ error 1: …………………………………………………… l2_error                                                         │
│ │ error 2: …………………………………………………… linf_error                                                       │
│ │ integral 1: …………………………………………… entropy_timederivative                                           │
│ │ integral 2: …………………………………………… entropy                                                          │
│ save analysis to file: …………………… no                                                               │
└──────────────────────────────────────────────────────────────────────────────────────────────────┘

┌──────────────────────────────────────────────────────────────────────────────────────────────────┐
│ AliveCallback                                                                                    │
│ ═════════════                                                                                    │
│ interval: ……………………………………………………… 10                                                               │
└──────────────────────────────────────────────────────────────────────────────────────────────────┘

┌──────────────────────────────────────────────────────────────────────────────────────────────────┐
│ Time integration                                                                                 │
│ ════════════════                                                                                 │
│ Start time: ………………………………………………… 0.0                                                              │
│ Final time: ………………………………………………… 1.1                                                              │
│ time integrator: …………………………………… CarpenterKennedy2N54                                             │
└──────────────────────────────────────────────────────────────────────────────────────────────────┘

────────────────────────────────────────────────────────────────────────────────────────────────────
 Simulation running 'LinearScalarAdvectionEquation2D' with polydeg = 3
────────────────────────────────────────────────────────────────────────────────────────────────────
 #timesteps:                  0                run time:       8.54000000e-07 s
[...]

ranocha

Really nice work, @sloede! Once my comments comments are resolved, please feel free to merge this PR.

src/basic_types.jl

src/callbacks_step/summary.jl

src/equations/equations.jl

src/semidiscretization/semidiscretization_hyperbolic.jl

src/solvers/dg/indicators.jl

src/callbacks_step/summary.jl

…periodic`

Co-authored-by: Hendrik Ranocha <ranocha@users.noreply.github.com>

sloede · 2020-11-15T07:16:30Z

Currently I see no sane way of including information about a restart, without adding additional fields to an existing data structure, wit the sole purpose of triggering a different output in the summary callback. Do I understand it correctly, that since restarting right now is essentially stateless, we do not have the capability to distinguish a restart from a regular start?

ranocha · 2020-11-15T07:21:39Z

Currently I see no sane way of including information about a restart, without adding additional fields to an existing data structure, wit the sole purpose of triggering a different output in the summary callback. Do I understand it correctly, that since restarting right now is essentially stateless, we do not have the capability to distinguish a restart from a regular start?

Yes, you're right.

sloede added 3 commits November 13, 2020 13:38

Initial version of "prettier" summary output

8c2d4c2

Fix type signature

2b8cfe6

Add number of spatial dimensions to semidisc show

4ae8e60

sloede mentioned this pull request Nov 13, 2020

Taal: Prettify simulation summary #302

Closed

ranocha reviewed Nov 13, 2020

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sloede added 5 commits November 13, 2020 22:22

Merge branch 'dev' into msl/prettify-summary-output

02a091c

Add show for SteadyStateCallback

ccd07f7

Change output width to 100

d92bb51

use !:compact to trigger summary output instead of :summary

a1d97e6

Add pretty output for SemiEulerGravity and ParametersEulerGravity

c7d5848

ranocha reviewed Nov 14, 2020

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Fix string indexing

e91f0a5

Co-authored-by: Hendrik Ranocha <ranocha@users.noreply.github.com>

ranocha approved these changes Nov 14, 2020

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sloede added 2 commits November 14, 2020 23:24

Add show to periodic BC

aa56f85

Allow nested output in SummaryCallback

e8ed070

sloede requested a review from ranocha November 14, 2020 23:07

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sloede and others added 2 commits November 15, 2020 07:44

Change show for BoundaryConditionPeriodic() to `boundary_condition_…

f39e8c7

…periodic`

Apply suggestions from code review by @ranocha

2bfc722

Co-authored-by: Hendrik Ranocha <ranocha@users.noreply.github.com>

Add mesh info semi output

95c7449

sloede requested a review from ranocha November 15, 2020 07:17

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sloede merged commit 513708d into dev Nov 15, 2020

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sloede commented Nov 14, 2020

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sloede commented Nov 15, 2020

ranocha commented Nov 15, 2020

Prettify summary output #333

Prettify summary output #333

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sloede commented Nov 14, 2020

Nested output (examples/2d/elixir_euler_blob_amr.jl)

Volume integral

AMR

Boundary conditions (examples/2d/elixir_hypdiff_nonperiodic.jl)

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Nested output (`examples/2d/elixir_euler_blob_amr.jl`)

Boundary conditions (`examples/2d/elixir_hypdiff_nonperiodic.jl`)