From 77fcb05ee419b4748efb51c1a89021770166a480 Mon Sep 17 00:00:00 2001
From: Tom Harrop <tharrop@unimelb.edu.au>
Date: Wed, 25 Sep 2024 17:38:34 +1000
Subject: [PATCH] switch back to container

---
 tools/plot_ragtag_paf/plot_ragtag_paf.xml | 15 +++++++++------
 1 file changed, 9 insertions(+), 6 deletions(-)

diff --git a/tools/plot_ragtag_paf/plot_ragtag_paf.xml b/tools/plot_ragtag_paf/plot_ragtag_paf.xml
index 1f6694da..23269d7c 100644
--- a/tools/plot_ragtag_paf/plot_ragtag_paf.xml
+++ b/tools/plot_ragtag_paf/plot_ragtag_paf.xml
@@ -1,12 +1,15 @@
 <tool id="plot_ragtag_paf" name="Plot RagTag output" version="0.0.1">
     <description>to compare query contigs to the reference</description>
     <requirements>
-        <requirement type="package" version="0.0.2">r-pafr</requirement>
-        <requirement type="package" version="0.4.2">r-viridislite</requirement>
-        <requirement type="package" version="1.15.4">r-data.table</requirement>
-        <requirement type="package" version="2.3.10">r-yaml</requirement>
-        <requirement type="package" version="3.5.1">r-ggplot2</requirement>
-        <requirement type="package" version="3.9.5">r-gtools</requirement>
+        <container type="docker">ghcr.io/tomharrop/r-containers:r2u_24.04_cv1</container>
+        <!-- The following requirements work but the fonts aren't configured
+        correctly -->
+        <!-- <requirement type="package" version="0.0.2">r-pafr</requirement> -->
+        <!-- <requirement type="package" version="0.4.2">r-viridislite</requirement> -->
+        <!-- <requirement type="package" version="1.15.4">r-data.table</requirement> -->
+        <!-- <requirement type="package" version="2.3.10">r-yaml</requirement> -->
+        <!-- <requirement type="package" version="3.5.1">r-ggplot2</requirement> -->
+        <!-- <requirement type="package" version="3.9.5">r-gtools</requirement> -->
     </requirements>
     <command detect_errors="exit_code"><![CDATA[
 Rscript