2024-08-22T04:22:34.1267509Z Current runner version: '2.319.1' 2024-08-22T04:22:34.1288682Z ##[group]Operating System 2024-08-22T04:22:34.1289249Z Microsoft Windows Server 2022 2024-08-22T04:22:34.1289702Z 10.0.20348 2024-08-22T04:22:34.1290048Z Datacenter 2024-08-22T04:22:34.1290332Z ##[endgroup] 2024-08-22T04:22:34.1290668Z ##[group]Runner Image 2024-08-22T04:22:34.1291093Z Image: windows-2022 2024-08-22T04:22:34.1291419Z Version: 20240811.1.0 2024-08-22T04:22:34.1292317Z Included Software: https://github.com/actions/runner-images/blob/win22/20240811.1/images/windows/Windows2022-Readme.md 2024-08-22T04:22:34.1293667Z Image Release: https://github.com/actions/runner-images/releases/tag/win22%2F20240811.1 2024-08-22T04:22:34.1294427Z ##[endgroup] 2024-08-22T04:22:34.1294738Z ##[group]Runner Image Provisioner 2024-08-22T04:22:34.1295166Z 2.0.382.1 2024-08-22T04:22:34.1295423Z ##[endgroup] 2024-08-22T04:22:34.1309114Z ##[group]GITHUB_TOKEN Permissions 2024-08-22T04:22:34.1310773Z Contents: read 2024-08-22T04:22:34.1311190Z Metadata: read 2024-08-22T04:22:34.1311543Z Packages: read 2024-08-22T04:22:34.1311882Z ##[endgroup] 2024-08-22T04:22:34.1314847Z Secret source: Actions 2024-08-22T04:22:34.1315355Z Prepare workflow directory 2024-08-22T04:22:34.2024169Z Prepare all required actions 2024-08-22T04:22:34.2182375Z Getting action download info 2024-08-22T04:22:34.4076637Z Download action repository 'r-hub/actions@v1' (SHA:6dfa5aa10532f35c73d10e7f0b10af8a1340de3e) 2024-08-22T04:22:35.0524026Z Getting action download info 2024-08-22T04:22:35.1950395Z Download action repository 'actions/checkout@v4' (SHA:692973e3d937129bcbf40652eb9f2f61becf3332) 2024-08-22T04:22:35.3215117Z Getting action download info 2024-08-22T04:22:35.5057583Z Download action repository 'r-lib/actions@v2' (SHA:e6be4b3706e0f39bc7a4cf4496a5f2c4cb840040) 2024-08-22T04:22:36.2201835Z Getting action download info 2024-08-22T04:22:36.3709808Z Getting action download info 2024-08-22T04:22:36.5328912Z Download action repository 'actions/cache@v4' (SHA:0c45773b623bea8c8e75f6c82b208c3cf94ea4f9) 2024-08-22T04:22:36.8063374Z Download action repository 'quarto-dev/quarto-actions@577558713f28cb3a0e7a735f80dce913d89b77d2' (SHA:577558713f28cb3a0e7a735f80dce913d89b77d2) 2024-08-22T04:22:37.3343754Z Getting action download info 2024-08-22T04:22:37.5245415Z Download action repository 'actions/upload-artifact@v4' (SHA:834a144ee995460fba8ed112a2fc961b36a5ec5a) 2024-08-22T04:22:38.0914588Z Getting action download info 2024-08-22T04:22:38.2799191Z Complete job name: windows (R-devel) 2024-08-22T04:22:38.3965499Z ##[group]Run r-hub/actions/checkout@v1 2024-08-22T04:22:38.3966023Z with: 2024-08-22T04:22:38.3966320Z repository: rolfTurner/kanova 2024-08-22T04:22:38.3966726Z submodules: false 2024-08-22T04:22:38.3967091Z ##[endgroup] 2024-08-22T04:22:38.4333492Z ##[group]Run actions/checkout@v4 2024-08-22T04:22:38.4333822Z with: 2024-08-22T04:22:38.4334027Z repository: rolfTurner/kanova 2024-08-22T04:22:38.4334314Z submodules: false 2024-08-22T04:22:38.4334703Z token: *** 2024-08-22T04:22:38.4334916Z ssh-strict: true 2024-08-22T04:22:38.4335135Z ssh-user: git 2024-08-22T04:22:38.4335360Z persist-credentials: true 2024-08-22T04:22:38.4335610Z clean: true 2024-08-22T04:22:38.4335840Z sparse-checkout-cone-mode: true 2024-08-22T04:22:38.4336127Z fetch-depth: 1 2024-08-22T04:22:38.4336332Z fetch-tags: false 2024-08-22T04:22:38.4336561Z show-progress: true 2024-08-22T04:22:38.4336782Z lfs: false 2024-08-22T04:22:38.4336994Z set-safe-directory: true 2024-08-22T04:22:38.4337344Z ##[endgroup] 2024-08-22T04:22:38.5862874Z Syncing repository: rolfTurner/kanova 2024-08-22T04:22:38.5864414Z ##[group]Getting Git version info 2024-08-22T04:22:38.5864946Z Working directory is 'D:\a\kanova\kanova' 2024-08-22T04:22:38.6585820Z [command]"C:\Program Files\Git\bin\git.exe" version 2024-08-22T04:22:38.6796447Z git version 2.46.0.windows.1 2024-08-22T04:22:38.6839919Z ##[endgroup] 2024-08-22T04:22:38.6858547Z Temporarily overriding HOME='D:\a\_temp\8da1e6f9-39fd-4671-95d9-23620dd3ee2a' before making global git config changes 2024-08-22T04:22:38.6861910Z Adding repository directory to the temporary git global config as a safe directory 2024-08-22T04:22:38.6869971Z [command]"C:\Program Files\Git\bin\git.exe" config --global --add safe.directory D:\a\kanova\kanova 2024-08-22T04:22:38.7093251Z Deleting the contents of 'D:\a\kanova\kanova' 2024-08-22T04:22:38.7098853Z ##[group]Initializing the repository 2024-08-22T04:22:38.7108708Z [command]"C:\Program Files\Git\bin\git.exe" init D:\a\kanova\kanova 2024-08-22T04:22:38.7472763Z Initialized empty Git repository in D:/a/kanova/kanova/.git/ 2024-08-22T04:22:38.7512634Z [command]"C:\Program Files\Git\bin\git.exe" remote add origin https://github.com/rolfTurner/kanova 2024-08-22T04:22:38.7754292Z ##[endgroup] 2024-08-22T04:22:38.7754785Z ##[group]Disabling automatic garbage collection 2024-08-22T04:22:38.7764255Z [command]"C:\Program Files\Git\bin\git.exe" config --local gc.auto 0 2024-08-22T04:22:38.7989336Z ##[endgroup] 2024-08-22T04:22:38.7990038Z ##[group]Setting up auth 2024-08-22T04:22:38.8005002Z [command]"C:\Program Files\Git\bin\git.exe" config --local --name-only --get-regexp core\.sshCommand 2024-08-22T04:22:38.8243590Z [command]"C:\Program Files\Git\bin\git.exe" submodule foreach --recursive "sh -c \"git config --local --name-only --get-regexp 'core\.sshCommand' && git config --local --unset-all 'core.sshCommand' || :\"" 2024-08-22T04:22:40.2250041Z [command]"C:\Program Files\Git\bin\git.exe" config --local --name-only --get-regexp http\.https\:\/\/github\.com\/\.extraheader 2024-08-22T04:22:40.2476150Z [command]"C:\Program Files\Git\bin\git.exe" submodule foreach --recursive "sh -c \"git config --local --name-only --get-regexp 'http\.https\:\/\/github\.com\/\.extraheader' && git config --local --unset-all 'http.https://github.com/.extraheader' || :\"" 2024-08-22T04:22:40.6302561Z [command]"C:\Program Files\Git\bin\git.exe" config --local http.https://github.com/.extraheader "AUTHORIZATION: basic ***" 2024-08-22T04:22:40.6542412Z ##[endgroup] 2024-08-22T04:22:40.6542922Z ##[group]Fetching the repository 2024-08-22T04:22:40.6559232Z [command]"C:\Program Files\Git\bin\git.exe" -c protocol.version=2 fetch --no-tags --prune --no-recurse-submodules --depth=1 origin +9259594d793957d5bf2b8f27a6b998345f608298:refs/remotes/origin/main 2024-08-22T04:22:41.6508302Z From https://github.com/rolfTurner/kanova 2024-08-22T04:22:41.6511665Z * [new ref] 9259594d793957d5bf2b8f27a6b998345f608298 -> origin/main 2024-08-22T04:22:41.6631761Z ##[endgroup] 2024-08-22T04:22:41.6632193Z ##[group]Determining the checkout info 2024-08-22T04:22:41.6635046Z ##[endgroup] 2024-08-22T04:22:41.6644870Z [command]"C:\Program Files\Git\bin\git.exe" sparse-checkout disable 2024-08-22T04:22:41.6883345Z [command]"C:\Program Files\Git\bin\git.exe" config --local --unset-all extensions.worktreeConfig 2024-08-22T04:22:41.7106282Z ##[group]Checking out the ref 2024-08-22T04:22:41.7116335Z [command]"C:\Program Files\Git\bin\git.exe" checkout --progress --force -B main refs/remotes/origin/main 2024-08-22T04:22:41.7551412Z branch 'main' set up to track 'origin/main'. 2024-08-22T04:22:41.7556132Z Switched to a new branch 'main' 2024-08-22T04:22:41.7585731Z ##[endgroup] 2024-08-22T04:22:41.7835001Z [command]"C:\Program Files\Git\bin\git.exe" log -1 --format='%H' 2024-08-22T04:22:41.8034828Z '9259594d793957d5bf2b8f27a6b998345f608298' 2024-08-22T04:22:41.8425332Z ##[group]Run r-hub/actions/setup-r@v1 2024-08-22T04:22:41.8425705Z with: 2024-08-22T04:22:41.8426137Z job-config: {"label":"windows (R-devel)","name":"windows","os":"windows-latest","r-version":"devel"} 2024-08-22T04:22:41.8426661Z ##[endgroup] 2024-08-22T04:22:41.8556888Z ##[group]Run r-lib/actions/setup-r@v2 2024-08-22T04:22:41.8557189Z with: 2024-08-22T04:22:41.8557376Z r-version: devel 2024-08-22T04:22:41.8557605Z use-public-rspm: true 2024-08-22T04:22:41.8557837Z Ncpus: 1 2024-08-22T04:22:41.8558048Z remove-openmp-macos: true 2024-08-22T04:22:41.8559092Z http-user-agent: default 2024-08-22T04:22:41.8559339Z install-r: true 2024-08-22T04:22:41.8559580Z windows-path-include-rtools: true 2024-08-22T04:22:41.8559907Z windows-path-include-mingw: true 2024-08-22T04:22:41.8560198Z update-rtools: false 2024-08-22T04:22:41.8560427Z ##[endgroup] 2024-08-22T04:22:42.6110163Z [command]D:\a\_temp\R-devel-win.exe /VERYSILENT /SUPPRESSMSGBOXES /DIR=C:\R 2024-08-22T04:22:59.3453478Z ##[group]Downloading and installing Ghostscript 2024-08-22T04:23:00.1388485Z [command]"C:\Program Files\PowerShell\7\pwsh.exe" -NoLogo -NoProfile -NonInteractive -ExecutionPolicy Unrestricted -Command "$ErrorActionPreference = 'Stop' ; try { Add-Type -AssemblyName System.IO.Compression.ZipFile } catch { } ; try { [System.IO.Compression.ZipFile]::ExtractToDirectory('D:\a\_temp\36befe4f-4b3d-4e40-a0f0-e62a367f40a8', 'D:\a\_temp\0dfc6fcb-3f11-44bb-84e1-69e1cceb7092', $true) } catch { if (($_.Exception.GetType().FullName -eq 'System.Management.Automation.MethodException') -or ($_.Exception.GetType().FullName -eq 'System.Management.Automation.RuntimeException') ){ Expand-Archive -LiteralPath 'D:\a\_temp\36befe4f-4b3d-4e40-a0f0-e62a367f40a8' -DestinationPath 'D:\a\_temp\0dfc6fcb-3f11-44bb-84e1-69e1cceb7092' -Force } else { throw $_ } } ;" 2024-08-22T04:23:02.5519698Z ##[endgroup] 2024-08-22T04:23:02.5783418Z ##[group]Run # 2024-08-22T04:23:02.5783681Z # 2024-08-22T04:23:02.5783933Z source("set-rhub-repos.R") 2024-08-22T04:23:02.5784225Z main() 2024-08-22T04:23:02.5792837Z shell: C:\R\bin\Rscript.EXE {0} 2024-08-22T04:23:02.5793132Z env: 2024-08-22T04:23:02.5793350Z _R_INSTALL_TIME_PATCHES_: no 2024-08-22T04:23:02.5793642Z R_LIBS_USER: D:\a\_temp\Library 2024-08-22T04:23:02.5793915Z TZ: UTC 2024-08-22T04:23:02.5794122Z _R_CHECK_SYSTEM_CLOCK_: FALSE 2024-08-22T04:23:02.5794400Z NOT_CRAN: true 2024-08-22T04:23:02.5794706Z RSPM: https://packagemanager.posit.co/cran/latest 2024-08-22T04:23:02.5795242Z RENV_CONFIG_REPOS_OVERRIDE: https://packagemanager.posit.co/cran/latest 2024-08-22T04:23:02.5795701Z ##[endgroup] 2024-08-22T04:23:03.5034642Z No extra repositoes for R 4.5.0 on Windows (x86-64) currently. 2024-08-22T04:23:03.5403009Z ##[group]Run r-hub/actions/setup-r-sysreqs@v1 2024-08-22T04:23:03.5403336Z with: 2024-08-22T04:23:03.5403509Z type: full 2024-08-22T04:23:03.5403708Z xquartz: true 2024-08-22T04:23:03.5403934Z env: 2024-08-22T04:23:03.5404123Z _R_INSTALL_TIME_PATCHES_: no 2024-08-22T04:23:03.5404408Z R_LIBS_USER: D:\a\_temp\Library 2024-08-22T04:23:03.5404670Z TZ: UTC 2024-08-22T04:23:03.5404865Z _R_CHECK_SYSTEM_CLOCK_: FALSE 2024-08-22T04:23:03.5405129Z NOT_CRAN: true 2024-08-22T04:23:03.5405424Z RSPM: https://packagemanager.posit.co/cran/latest 2024-08-22T04:23:03.5405933Z RENV_CONFIG_REPOS_OVERRIDE: https://packagemanager.posit.co/cran/latest 2024-08-22T04:23:03.5406369Z ##[endgroup] 2024-08-22T04:23:03.5619530Z ##[group]Run r-hub/actions/platform-info@v1 2024-08-22T04:23:03.5619935Z with: 2024-08-22T04:23:03.5620378Z job-config: {"label":"windows (R-devel)","name":"windows","os":"windows-latest","r-version":"devel"} 2024-08-22T04:23:03.5620904Z env: 2024-08-22T04:23:03.5621095Z _R_INSTALL_TIME_PATCHES_: no 2024-08-22T04:23:03.5621378Z R_LIBS_USER: D:\a\_temp\Library 2024-08-22T04:23:03.5621647Z TZ: UTC 2024-08-22T04:23:03.5621846Z _R_CHECK_SYSTEM_CLOCK_: FALSE 2024-08-22T04:23:03.5622110Z NOT_CRAN: true 2024-08-22T04:23:03.5622413Z RSPM: https://packagemanager.posit.co/cran/latest 2024-08-22T04:23:03.5622921Z RENV_CONFIG_REPOS_OVERRIDE: https://packagemanager.posit.co/cran/latest 2024-08-22T04:23:03.5623359Z ##[endgroup] 2024-08-22T04:23:03.5716296Z ##[group]Run # 2024-08-22T04:23:03.5716526Z # 2024-08-22T04:23:03.5716750Z cat("::group::R Options\n") 2024-08-22T04:23:03.5717040Z options() 2024-08-22T04:23:03.5717308Z cat("::endgroup::\n") 2024-08-22T04:23:03.5722932Z shell: C:\R\bin\Rscript.EXE {0} 2024-08-22T04:23:03.5723366Z env: 2024-08-22T04:23:03.5723643Z _R_INSTALL_TIME_PATCHES_: no 2024-08-22T04:23:03.5723928Z R_LIBS_USER: D:\a\_temp\Library 2024-08-22T04:23:03.5724202Z TZ: UTC 2024-08-22T04:23:03.5724397Z _R_CHECK_SYSTEM_CLOCK_: FALSE 2024-08-22T04:23:03.5724665Z NOT_CRAN: true 2024-08-22T04:23:03.5724968Z RSPM: https://packagemanager.posit.co/cran/latest 2024-08-22T04:23:03.5725490Z RENV_CONFIG_REPOS_OVERRIDE: https://packagemanager.posit.co/cran/latest 2024-08-22T04:23:03.5725937Z ##[endgroup] 2024-08-22T04:23:03.7627845Z ##[group]R Options 2024-08-22T04:23:03.7628799Z $add.smooth 2024-08-22T04:23:03.7629248Z [1] TRUE 2024-08-22T04:23:03.7629674Z 2024-08-22T04:23:03.7629942Z $browserNLdisabled 2024-08-22T04:23:03.7632368Z [1] FALSE 2024-08-22T04:23:03.7632659Z 2024-08-22T04:23:03.7632919Z $catch.script.errors 2024-08-22T04:23:03.7633462Z [1] FALSE 2024-08-22T04:23:03.7633767Z 2024-08-22T04:23:03.7633975Z $CBoundsCheck 2024-08-22T04:23:03.7634416Z [1] FALSE 2024-08-22T04:23:03.7635355Z 2024-08-22T04:23:03.7636331Z $check.bounds 2024-08-22T04:23:03.7636905Z [1] FALSE 2024-08-22T04:23:03.7637089Z 2024-08-22T04:23:03.7637270Z $citation.bibtex.max 2024-08-22T04:23:03.7637612Z [1] 1 2024-08-22T04:23:03.7637780Z 2024-08-22T04:23:03.7637904Z $continue 2024-08-22T04:23:03.7638197Z [1] "+ " 2024-08-22T04:23:03.7638310Z 2024-08-22T04:23:03.7638395Z $contrasts 2024-08-22T04:23:03.7638653Z unordered ordered 2024-08-22T04:23:03.7639022Z "contr.treatment" "contr.poly" 2024-08-22T04:23:03.7639250Z 2024-08-22T04:23:03.7639351Z $defaultPackages 2024-08-22T04:23:03.7639780Z [1] "datasets" "utils" "grDevices" "graphics" "stats" "methods" 2024-08-22T04:23:03.7640129Z 2024-08-22T04:23:03.7640216Z $demo.ask 2024-08-22T04:23:03.7640411Z [1] "default" 2024-08-22T04:23:03.7640539Z 2024-08-22T04:23:03.7640634Z $deparse.cutoff 2024-08-22T04:23:03.7640842Z [1] 60 2024-08-22T04:23:03.7640947Z 2024-08-22T04:23:03.7641029Z $device 2024-08-22T04:23:03.7642034Z function (file = if (onefile) "Rplots.pdf" else "Rplot%03d.pdf", 2024-08-22T04:23:03.7643125Z width, height, onefile, family, title, fonts, version, paper, 2024-08-22T04:23:03.7644170Z encoding, bg, fg, pointsize, pagecentre, colormodel, useDingbats, 2024-08-22T04:23:03.7645694Z useKerning, fillOddEven, compress, timestamp, producer, author) 2024-08-22T04:23:03.7646418Z { 2024-08-22T04:23:03.7647351Z initPSandPDFfonts() 2024-08-22T04:23:03.7648221Z new <- list() 2024-08-22T04:23:03.7648614Z if (!missing(width)) 2024-08-22T04:23:03.7649120Z new$width <- width 2024-08-22T04:23:03.7649563Z if (!missing(height)) 2024-08-22T04:23:03.7650067Z new$height <- height 2024-08-22T04:23:03.7650533Z if (!missing(onefile)) 2024-08-22T04:23:03.7651058Z new$onefile <- onefile 2024-08-22T04:23:03.7653873Z if (!missing(title)) 2024-08-22T04:23:03.7654506Z new$title <- title 2024-08-22T04:23:03.7654969Z if (!missing(fonts)) 2024-08-22T04:23:03.7655458Z new$fonts <- fonts 2024-08-22T04:23:03.7655919Z if (!missing(version)) 2024-08-22T04:23:03.7656455Z new$version <- version 2024-08-22T04:23:03.7656910Z if (!missing(paper)) 2024-08-22T04:23:03.7657390Z new$paper <- paper 2024-08-22T04:23:03.7657886Z if (!missing(encoding)) 2024-08-22T04:23:03.7658432Z new$encoding <- encoding 2024-08-22T04:23:03.7658881Z if (!missing(bg)) 2024-08-22T04:23:03.7659298Z new$bg <- bg 2024-08-22T04:23:03.7659668Z if (!missing(fg)) 2024-08-22T04:23:03.7660109Z new$fg <- fg 2024-08-22T04:23:03.7660505Z if (!missing(pointsize)) 2024-08-22T04:23:03.7661041Z new$pointsize <- pointsize 2024-08-22T04:23:03.7661542Z if (!missing(pagecentre)) 2024-08-22T04:23:03.7662103Z new$pagecentre <- pagecentre 2024-08-22T04:23:03.7662624Z if (!missing(colormodel)) 2024-08-22T04:23:03.7663173Z new$colormodel <- colormodel 2024-08-22T04:23:03.7663875Z if (!missing(useDingbats)) 2024-08-22T04:23:03.7664496Z new$useDingbats <- useDingbats 2024-08-22T04:23:03.7665002Z if (!missing(useKerning)) 2024-08-22T04:23:03.7665585Z new$useKerning <- useKerning 2024-08-22T04:23:03.7666103Z if (!missing(fillOddEven)) 2024-08-22T04:23:03.7666675Z new$fillOddEven <- fillOddEven 2024-08-22T04:23:03.7667195Z if (!missing(compress)) 2024-08-22T04:23:03.7667740Z new$compress <- compress 2024-08-22T04:23:03.7668216Z if (!missing(timestamp)) 2024-08-22T04:23:03.7668759Z new$timestamp <- timestamp 2024-08-22T04:23:03.7669237Z if (!missing(producer)) 2024-08-22T04:23:03.7669758Z new$producer <- producer 2024-08-22T04:23:03.7670234Z if (!missing(author)) 2024-08-22T04:23:03.7670726Z new$author <- author 2024-08-22T04:23:03.7671555Z old <- check.options(new, name.opt = ".PDF.Options", envir = .PSenv) 2024-08-22T04:23:03.7672453Z if (!missing(family) && (inherits(family, "Type1Font") || 2024-08-22T04:23:03.7673151Z inherits(family, "CIDFont"))) { 2024-08-22T04:23:03.7673750Z enc <- family$encoding 2024-08-22T04:23:03.7674391Z if (inherits(family, "Type1Font") && !is.null(enc) && 2024-08-22T04:23:03.7675013Z enc != "default" && (is.null(old$encoding) || old$encoding == 2024-08-22T04:23:03.7675431Z "default")) 2024-08-22T04:23:03.7675778Z old$encoding <- enc 2024-08-22T04:23:03.7676122Z family <- family$metrics 2024-08-22T04:23:03.7676375Z } 2024-08-22T04:23:03.7676703Z if (is.null(old$encoding) || old$encoding == "default") 2024-08-22T04:23:03.7677178Z old$encoding <- guessEncoding() 2024-08-22T04:23:03.7677505Z if (!missing(family)) { 2024-08-22T04:23:03.7677798Z if (length(family) == 4L) { 2024-08-22T04:23:03.7678208Z family <- c(family, "Symbol.afm") 2024-08-22T04:23:03.7678510Z } 2024-08-22T04:23:03.7678759Z else if (length(family) == 5L) { 2024-08-22T04:23:03.7679049Z } 2024-08-22T04:23:03.7679283Z else if (length(family) == 1L) { 2024-08-22T04:23:03.7679686Z pf <- pdfFonts(family)[[1L]] 2024-08-22T04:23:03.7680012Z if (is.null(pf)) 2024-08-22T04:23:03.7680436Z stop(gettextf("unknown family '%s'", family), 2024-08-22T04:23:03.7680820Z domain = NA) 2024-08-22T04:23:03.7681126Z matchFont(pf, old$encoding) 2024-08-22T04:23:03.7681408Z } 2024-08-22T04:23:03.7681726Z else stop("invalid 'family' argument") 2024-08-22T04:23:03.7682302Z old$family <- family 2024-08-22T04:23:03.7682673Z } 2024-08-22T04:23:03.7682939Z version <- old$version 2024-08-22T04:23:03.7683394Z versions <- c("1.1", "1.2", "1.3", "1.4", "1.5", "1.6", "1.7", 2024-08-22T04:23:03.7683768Z "2.0") 2024-08-22T04:23:03.7684606Z if (version %in% versions) 2024-08-22T04:23:03.7685113Z version <- as.integer(strsplit(version, "[.]")[[1L]]) 2024-08-22T04:23:03.7685542Z else stop("invalid PDF version") 2024-08-22T04:23:03.7685892Z onefile <- old$onefile 2024-08-22T04:23:03.7686175Z if (!checkIntFormat(file)) 2024-08-22T04:23:03.7686624Z stop(gettextf("invalid 'file' argument '%s'", file), 2024-08-22T04:23:03.7687000Z domain = NA) 2024-08-22T04:23:03.7687404Z .External(C_PDF, file, old$paper, old$family, old$encoding, 2024-08-22T04:23:03.7687925Z old$bg, old$fg, old$width, old$height, old$pointsize, 2024-08-22T04:23:03.7688452Z onefile, old$pagecentre, old$title, old$fonts, version[1L], 2024-08-22T04:23:03.7689020Z version[2L], old$colormodel, old$useDingbats, old$useKerning, 2024-08-22T04:23:03.7689584Z old$fillOddEven, old$compress, old$timestamp, old$producer, 2024-08-22T04:23:03.7689990Z old$author) 2024-08-22T04:23:03.7690221Z invisible() 2024-08-22T04:23:03.7690416Z } 2024-08-22T04:23:03.7691211Z 2024-08-22T04:23:03.7691548Z 2024-08-22T04:23:03.7691885Z 2024-08-22T04:23:03.7692071Z $device.ask.default 2024-08-22T04:23:03.7692355Z [1] FALSE 2024-08-22T04:23:03.7692480Z 2024-08-22T04:23:03.7692565Z $digits 2024-08-22T04:23:03.7692834Z [1] 7 2024-08-22T04:23:03.7693004Z 2024-08-22T04:23:03.7693118Z $echo 2024-08-22T04:23:03.7693311Z [1] FALSE 2024-08-22T04:23:03.7693498Z 2024-08-22T04:23:03.7693611Z $editor 2024-08-22T04:23:03.7693846Z [1] "notepad" 2024-08-22T04:23:03.7693972Z 2024-08-22T04:23:03.7694050Z $encoding 2024-08-22T04:23:03.7694253Z [1] "native.enc" 2024-08-22T04:23:03.7694393Z 2024-08-22T04:23:03.7694487Z $example.ask 2024-08-22T04:23:03.7694688Z [1] "default" 2024-08-22T04:23:03.7694815Z 2024-08-22T04:23:03.7694905Z $expressions 2024-08-22T04:23:03.7695096Z [1] 5000 2024-08-22T04:23:03.7695205Z 2024-08-22T04:23:03.7695309Z $help.search.types 2024-08-22T04:23:03.7695586Z [1] "vignette" "demo" "help" 2024-08-22T04:23:03.7695811Z 2024-08-22T04:23:03.7695921Z $help.try.all.packages 2024-08-22T04:23:03.7696160Z [1] FALSE 2024-08-22T04:23:03.7696273Z 2024-08-22T04:23:03.7696358Z $help_type 2024-08-22T04:23:03.7696554Z [1] "html" 2024-08-22T04:23:03.7696662Z 2024-08-22T04:23:03.7696763Z $HTTPUserAgent 2024-08-22T04:23:03.7697282Z [1] "R/4.5.0 R (4.5.0 x86_64-w64-mingw32 x86_64 mingw32) on GitHub Actions" 2024-08-22T04:23:03.7697635Z 2024-08-22T04:23:03.7697786Z $install.packages.compile.from.source 2024-08-22T04:23:03.7698111Z [1] "interactive" 2024-08-22T04:23:03.7698249Z 2024-08-22T04:23:03.7698341Z $internet.info 2024-08-22T04:23:03.7698534Z [1] 2 2024-08-22T04:23:03.7698632Z 2024-08-22T04:23:03.7698733Z $keep.parse.data 2024-08-22T04:23:03.7698946Z [1] TRUE 2024-08-22T04:23:03.7699052Z 2024-08-22T04:23:03.7699160Z $keep.parse.data.pkgs 2024-08-22T04:23:03.7699395Z [1] FALSE 2024-08-22T04:23:03.7699505Z 2024-08-22T04:23:03.7699600Z $keep.source 2024-08-22T04:23:03.7699790Z [1] FALSE 2024-08-22T04:23:03.7699902Z 2024-08-22T04:23:03.7699996Z $keep.source.pkgs 2024-08-22T04:23:03.7700206Z [1] FALSE 2024-08-22T04:23:03.7700310Z 2024-08-22T04:23:03.7700395Z $locatorBell 2024-08-22T04:23:03.7700589Z [1] TRUE 2024-08-22T04:23:03.7700694Z 2024-08-22T04:23:03.7700771Z $mailer 2024-08-22T04:23:03.7700948Z [1] "mailto" 2024-08-22T04:23:03.7701071Z 2024-08-22T04:23:03.7701145Z $matprod 2024-08-22T04:23:03.7701338Z [1] "default" 2024-08-22T04:23:03.7701459Z 2024-08-22T04:23:03.7701566Z $max.contour.segments 2024-08-22T04:23:03.7701792Z [1] 25000 2024-08-22T04:23:03.7701908Z 2024-08-22T04:23:03.7701991Z $max.print 2024-08-22T04:23:03.7702180Z [1] 99999 2024-08-22T04:23:03.7702283Z 2024-08-22T04:23:03.7702374Z $menu.graphics 2024-08-22T04:23:03.7702575Z [1] TRUE 2024-08-22T04:23:03.7702678Z 2024-08-22T04:23:03.7702766Z $na.action 2024-08-22T04:23:03.7703075Z [1] "na.omit" 2024-08-22T04:23:03.7703211Z 2024-08-22T04:23:03.7703279Z $Ncpus 2024-08-22T04:23:03.7703453Z [1] 1 2024-08-22T04:23:03.7703552Z 2024-08-22T04:23:03.7703635Z $nwarnings 2024-08-22T04:23:03.7703812Z [1] 50 2024-08-22T04:23:03.7703910Z 2024-08-22T04:23:03.7703985Z $OutDec 2024-08-22T04:23:03.7704148Z [1] "." 2024-08-22T04:23:03.7704257Z 2024-08-22T04:23:03.7704323Z $pager 2024-08-22T04:23:03.7704512Z [1] "internal" 2024-08-22T04:23:03.7704635Z 2024-08-22T04:23:03.7704730Z $papersize 2024-08-22T04:23:03.7704918Z [1] "letter" 2024-08-22T04:23:03.7705043Z 2024-08-22T04:23:03.7705145Z $PCRE_limit_recursion 2024-08-22T04:23:03.7705360Z [1] NA 2024-08-22T04:23:03.7705460Z 2024-08-22T04:23:03.7705545Z $PCRE_study 2024-08-22T04:23:03.7705736Z [1] FALSE 2024-08-22T04:23:03.7705841Z 2024-08-22T04:23:03.7705933Z $PCRE_use_JIT 2024-08-22T04:23:03.7706163Z [1] TRUE 2024-08-22T04:23:03.7706267Z 2024-08-22T04:23:03.7706349Z $pdfviewer 2024-08-22T04:23:03.7706574Z [1] "C:/R/bin/x64/open.exe" 2024-08-22T04:23:03.7706748Z 2024-08-22T04:23:03.7706829Z $pkgType 2024-08-22T04:23:03.7707086Z [1] "both" 2024-08-22T04:23:03.7707201Z 2024-08-22T04:23:03.7707270Z $prompt 2024-08-22T04:23:03.7707451Z [1] "> " 2024-08-22T04:23:03.7707553Z 2024-08-22T04:23:03.7707622Z $repos 2024-08-22T04:23:03.7707868Z RSPM 2024-08-22T04:23:03.7708289Z "https://packagemanager.posit.co/cran/latest" 2024-08-22T04:23:03.7708726Z CRAN 2024-08-22T04:23:03.7709112Z "https://cran.rstudio.com" 2024-08-22T04:23:03.7709342Z 2024-08-22T04:23:03.7709411Z $scipen 2024-08-22T04:23:03.7709578Z [1] 0 2024-08-22T04:23:03.7709677Z 2024-08-22T04:23:03.7709786Z $show.coef.Pvalues 2024-08-22T04:23:03.7709994Z [1] TRUE 2024-08-22T04:23:03.7710109Z 2024-08-22T04:23:03.7710210Z $show.error.messages 2024-08-22T04:23:03.7710434Z [1] TRUE 2024-08-22T04:23:03.7710538Z 2024-08-22T04:23:03.7710641Z $show.signif.stars 2024-08-22T04:23:03.7710849Z [1] TRUE 2024-08-22T04:23:03.7710957Z 2024-08-22T04:23:03.7711052Z $showErrorCalls 2024-08-22T04:23:03.7711254Z [1] TRUE 2024-08-22T04:23:03.7711358Z 2024-08-22T04:23:03.7711441Z $showNCalls 2024-08-22T04:23:03.7711622Z [1] 50 2024-08-22T04:23:03.7711721Z 2024-08-22T04:23:03.7711819Z $showWarnCalls 2024-08-22T04:23:03.7712011Z [1] FALSE 2024-08-22T04:23:03.7712125Z 2024-08-22T04:23:03.7712188Z $str 2024-08-22T04:23:03.7712382Z $str$strict.width 2024-08-22T04:23:03.7712581Z [1] "no" 2024-08-22T04:23:03.7712695Z 2024-08-22T04:23:03.7712783Z $str$digits.d 2024-08-22T04:23:03.7712971Z [1] 3 2024-08-22T04:23:03.7713070Z 2024-08-22T04:23:03.7713159Z $str$vec.len 2024-08-22T04:23:03.7713335Z [1] 4 2024-08-22T04:23:03.7713438Z 2024-08-22T04:23:03.7713524Z $str$list.len 2024-08-22T04:23:03.7713708Z [1] 99 2024-08-22T04:23:03.7713807Z 2024-08-22T04:23:03.7713903Z $str$deparse.lines 2024-08-22T04:23:03.7714104Z NULL 2024-08-22T04:23:03.7714204Z 2024-08-22T04:23:03.7714316Z $str$drop.deparse.attr 2024-08-22T04:23:03.7714544Z [1] TRUE 2024-08-22T04:23:03.7714654Z 2024-08-22T04:23:03.7714739Z $str$formatNum 2024-08-22T04:23:03.7714959Z function (x, ...) 2024-08-22T04:23:03.7715271Z format(x, trim = TRUE, drop0trailing = TRUE, ...) 2024-08-22T04:23:03.7715661Z 2024-08-22T04:23:03.7715856Z 2024-08-22T04:23:03.7715861Z 2024-08-22T04:23:03.7715972Z $str.dendrogram.last 2024-08-22T04:23:03.7716182Z [1] "`" 2024-08-22T04:23:03.7716294Z 2024-08-22T04:23:03.7716366Z $timeout 2024-08-22T04:23:03.7716532Z [1] 60 2024-08-22T04:23:03.7716629Z 2024-08-22T04:23:03.7716706Z $ts.eps 2024-08-22T04:23:03.7716926Z [1] 1e-05 2024-08-22T04:23:03.7717040Z 2024-08-22T04:23:03.7717126Z $ts.S.compat 2024-08-22T04:23:03.7717324Z [1] FALSE 2024-08-22T04:23:03.7717428Z 2024-08-22T04:23:03.7717494Z $unzip 2024-08-22T04:23:03.7717680Z [1] "internal" 2024-08-22T04:23:03.7717803Z 2024-08-22T04:23:03.7717973Z $useFancyQuotes 2024-08-22T04:23:03.7718174Z [1] FALSE 2024-08-22T04:23:03.7718286Z 2024-08-22T04:23:03.7718364Z $verbose 2024-08-22T04:23:03.7718542Z [1] FALSE 2024-08-22T04:23:03.7718648Z 2024-08-22T04:23:03.7718712Z $warn 2024-08-22T04:23:03.7718878Z [1] 0 2024-08-22T04:23:03.7718975Z 2024-08-22T04:23:03.7719072Z $warning.length 2024-08-22T04:23:03.7719275Z [1] 1000 2024-08-22T04:23:03.7719382Z 2024-08-22T04:23:03.7719488Z $warnPartialMatchArgs 2024-08-22T04:23:03.7719720Z [1] FALSE 2024-08-22T04:23:03.7719826Z 2024-08-22T04:23:03.7719940Z $warnPartialMatchAttr 2024-08-22T04:23:03.7720155Z [1] FALSE 2024-08-22T04:23:03.7720270Z 2024-08-22T04:23:03.7720381Z $warnPartialMatchDollar 2024-08-22T04:23:03.7720618Z [1] FALSE 2024-08-22T04:23:03.7720726Z 2024-08-22T04:23:03.7720791Z $width 2024-08-22T04:23:03.7720959Z [1] 80 2024-08-22T04:23:03.7721057Z 2024-08-22T04:23:03.7721157Z $windowsTimeouts 2024-08-22T04:23:03.7721364Z [1] 100 500 2024-08-22T04:23:03.7721482Z 2024-08-22T04:23:03.7721921Z ##[endgroup] 2024-08-22T04:23:03.7886849Z ##[group]Run # 2024-08-22T04:23:03.7887178Z # 2024-08-22T04:23:03.7887452Z cat("::group::Environment variables in R\n") 2024-08-22T04:23:03.7887816Z Sys.getenv() 2024-08-22T04:23:03.7888065Z cat("::endgroup::\n") 2024-08-22T04:23:03.7894519Z shell: C:\R\bin\Rscript.EXE {0} 2024-08-22T04:23:03.7894813Z env: 2024-08-22T04:23:03.7895025Z _R_INSTALL_TIME_PATCHES_: no 2024-08-22T04:23:03.7895320Z R_LIBS_USER: D:\a\_temp\Library 2024-08-22T04:23:03.7895591Z TZ: UTC 2024-08-22T04:23:03.7895785Z _R_CHECK_SYSTEM_CLOCK_: FALSE 2024-08-22T04:23:03.7896049Z NOT_CRAN: true 2024-08-22T04:23:03.7896350Z RSPM: https://packagemanager.posit.co/cran/latest 2024-08-22T04:23:03.7896866Z RENV_CONFIG_REPOS_OVERRIDE: https://packagemanager.posit.co/cran/latest 2024-08-22T04:23:03.7897304Z ##[endgroup] 2024-08-22T04:23:03.9847382Z ##[group]Environment variables in R 2024-08-22T04:23:04.0098180Z _R_CHECK_SYSTEM_CLOCK_ 2024-08-22T04:23:04.0098842Z FALSE 2024-08-22T04:23:04.0099448Z _R_INSTALL_TIME_PATCHES_ 2024-08-22T04:23:04.0099955Z no 2024-08-22T04:23:04.0100422Z ACTIONS_RUNNER_ACTION_ARCHIVE_CACHE 2024-08-22T04:23:04.0100970Z C:\actionarchivecache\ 2024-08-22T04:23:04.0101547Z ALLUSERSPROFILE C:\ProgramData 2024-08-22T04:23:04.0102387Z ANDROID_HOME C:\Android\android-sdk 2024-08-22T04:23:04.0103270Z ANDROID_NDK C:\Android\android-sdk\ndk\27.0.12077973 2024-08-22T04:23:04.0104248Z ANDROID_NDK_HOME C:\Android\android-sdk\ndk\27.0.12077973 2024-08-22T04:23:04.0104919Z ANDROID_NDK_LATEST_HOME 2024-08-22T04:23:04.0105549Z C:\Android\android-sdk\ndk\27.0.12077973 2024-08-22T04:23:04.0106435Z ANDROID_NDK_ROOT C:\Android\android-sdk\ndk\27.0.12077973 2024-08-22T04:23:04.0107264Z ANDROID_SDK_ROOT C:\Android\android-sdk 2024-08-22T04:23:04.0108460Z ANT_HOME 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runneradmin 2024-08-22T04:23:04.0253175Z USERPROFILE C:\Users\runneradmin 2024-08-22T04:23:04.0253522Z VCPKG_INSTALLATION_ROOT 2024-08-22T04:23:04.0253792Z C:\vcpkg 2024-08-22T04:23:04.0254096Z windir C:\Windows 2024-08-22T04:23:04.0254526Z WIX C:\Program Files (x86)\WiX Toolset v3.14\ 2024-08-22T04:23:04.0255156Z ##[endgroup] 2024-08-22T04:23:04.0353337Z ##[group]Run # 2024-08-22T04:23:04.0353560Z # 2024-08-22T04:23:04.0353787Z cat("::group::OS information\n") 2024-08-22T04:23:04.0354152Z if (Sys.info()[["sysname"]] == "Linux") { 2024-08-22T04:23:04.0354718Z  writeLines("-- uname -a -------------------------------------------------------------") 2024-08-22T04:23:04.0355260Z  system("uname -a") 2024-08-22T04:23:04.0355582Z  if (file.exists("/etc/os-release")) { 2024-08-22T04:23:04.0356114Z  writeLines("-- /etc/os-release ------------------------------------------------------") 2024-08-22T04:23:04.0356681Z  writeLines(readLines("/etc/os-release")) 2024-08-22T04:23:04.0357023Z  } 2024-08-22T04:23:04.0357305Z } else if (Sys.info()[["sysname"]] == "Darwin") { 2024-08-22T04:23:04.0357866Z  writeLines("-- macOS system info ----------------------------------------------------") 2024-08-22T04:23:04.0358509Z  system("system_profiler SPSoftwareDataType SPHardwareDataType") 2024-08-22T04:23:04.0359032Z } else if (Sys.info()[["sysname"]] == "Windows") { 2024-08-22T04:23:04.0359578Z  writeLines("-- Windows system info --------------------------------------------------") 2024-08-22T04:23:04.0360063Z  system("systeminfo") 2024-08-22T04:23:04.0360331Z } 2024-08-22T04:23:04.0360530Z cat("::endgroup::\n") 2024-08-22T04:23:04.0366172Z shell: C:\R\bin\Rscript.EXE {0} 2024-08-22T04:23:04.0366451Z env: 2024-08-22T04:23:04.0366647Z _R_INSTALL_TIME_PATCHES_: no 2024-08-22T04:23:04.0366930Z R_LIBS_USER: D:\a\_temp\Library 2024-08-22T04:23:04.0367192Z TZ: UTC 2024-08-22T04:23:04.0367389Z _R_CHECK_SYSTEM_CLOCK_: FALSE 2024-08-22T04:23:04.0367650Z NOT_CRAN: true 2024-08-22T04:23:04.0368310Z RSPM: https://packagemanager.posit.co/cran/latest 2024-08-22T04:23:04.0368865Z RENV_CONFIG_REPOS_OVERRIDE: https://packagemanager.posit.co/cran/latest 2024-08-22T04:23:04.0369310Z ##[endgroup] 2024-08-22T04:23:04.2028401Z ##[group]OS information 2024-08-22T04:23:04.2042061Z -- Windows system info -------------------------------------------------- 2024-08-22T04:23:06.0453743Z 2024-08-22T04:23:06.0456355Z Host Name: fv-az1105-499 2024-08-22T04:23:06.0458531Z OS Name: Microsoft Windows Server 2022 Datacenter 2024-08-22T04:23:06.0461151Z OS Version: 10.0.20348 N/A Build 20348 2024-08-22T04:23:06.0463907Z OS Manufacturer: Microsoft Corporation 2024-08-22T04:23:06.0466272Z OS Configuration: Standalone Server 2024-08-22T04:23:06.0468896Z OS Build Type: Multiprocessor Free 2024-08-22T04:23:06.0471296Z Registered Owner: N/A 2024-08-22T04:23:06.0473620Z Registered Organization: N/A 2024-08-22T04:23:06.0476166Z Product ID: 00454-60000-00001-AA427 2024-08-22T04:23:06.0478504Z Original Install Date: 8/20/2024, 11:12:33 PM 2024-08-22T04:23:06.0480969Z System Boot Time: 8/22/2024, 4:13:33 AM 2024-08-22T04:23:06.0483348Z System Manufacturer: Microsoft Corporation 2024-08-22T04:23:06.0485677Z System Model: Virtual Machine 2024-08-22T04:23:06.0488401Z System Type: x64-based PC 2024-08-22T04:23:06.0491019Z Processor(s): 1 Processor(s) Installed. 2024-08-22T04:23:06.0493405Z [01]: AMD64 Family 25 Model 1 Stepping 1 AuthenticAMD ~2445 Mhz 2024-08-22T04:23:06.0495763Z BIOS Version: American Megatrends Inc. 090008 , 12/7/2018 2024-08-22T04:23:06.0498032Z Windows Directory: C:\Windows 2024-08-22T04:23:06.0500421Z System Directory: C:\Windows\system32 2024-08-22T04:23:06.0502793Z Boot Device: \Device\HarddiskVolume1 2024-08-22T04:23:06.0505328Z System Locale: en-us;English (United States) 2024-08-22T04:23:06.0507819Z Input Locale: en-us;English (United States) 2024-08-22T04:23:06.0510107Z Time Zone: (UTC) Coordinated Universal Time 2024-08-22T04:23:06.0512424Z Total Physical Memory: 16,384 MB 2024-08-22T04:23:06.0514781Z Available Physical Memory: 13,980 MB 2024-08-22T04:23:06.0517144Z Virtual Memory: Max Size: 19,328 MB 2024-08-22T04:23:06.0519547Z Virtual Memory: Available: 17,234 MB 2024-08-22T04:23:06.0522065Z Virtual Memory: In Use: 2,094 MB 2024-08-22T04:23:06.0524505Z Page File Location(s): D:\pagefile.sys 2024-08-22T04:23:06.0526811Z Domain: WORKGROUP 2024-08-22T04:23:06.0529215Z Logon Server: \\fv-az1105-499 2024-08-22T04:23:06.0531653Z Hotfix(s): 5 Hotfix(s) Installed. 2024-08-22T04:23:06.0533953Z [01]: KB5039907 2024-08-22T04:23:06.0536244Z [02]: KB5039889 2024-08-22T04:23:06.0538566Z [03]: KB5011048 2024-08-22T04:23:06.0540913Z [04]: KB5040437 2024-08-22T04:23:06.0543212Z [05]: KB5040571 2024-08-22T04:23:06.0545678Z Network Card(s): 1 NIC(s) Installed. 2024-08-22T04:23:06.0548151Z [01]: Microsoft Hyper-V Network Adapter 2024-08-22T04:23:06.0550841Z Connection Name: Ethernet 2024-08-22T04:23:06.0553305Z DHCP Enabled: Yes 2024-08-22T04:23:06.0555750Z DHCP Server: 168.63.129.16 2024-08-22T04:23:06.0558001Z IP address(es) 2024-08-22T04:23:06.0560367Z [01]: 10.1.0.110 2024-08-22T04:23:06.0563005Z [02]: fe80::9dd3:8dcb:86a6:2273 2024-08-22T04:23:06.0565873Z Hyper-V Requirements: A hypervisor has been detected. Features required for Hyper-V will not be displayed. 2024-08-22T04:23:06.0598558Z [1] 0 2024-08-22T04:23:06.0600326Z ##[endgroup] 2024-08-22T04:23:06.0788157Z ##[group]Run # 2024-08-22T04:23:06.0788401Z # 2024-08-22T04:23:06.0788650Z cat("::group::Compiler information\n") 2024-08-22T04:23:06.0789166Z writeLines("-- $(CC) --version ------------------------------------------------------") 2024-08-22T04:23:06.0789985Z invisible(system(paste(system(paste0(file.path(R.home("bin"), "R"), " CMD config CC"), intern = TRUE), "--version"))) 2024-08-22T04:23:06.0790789Z writeLines("-- $(CXX) --version ----------------------------------------------------") 2024-08-22T04:23:06.0791595Z invisible(system(paste(system(paste0(file.path(R.home("bin"), "R"), " CMD config CXX"), intern = TRUE), "--version"))) 2024-08-22T04:23:06.0792384Z writeLines("-- $(FC) --version ------------------------------------------------------") 2024-08-22T04:23:06.0793197Z invisible(system(paste(system(paste0(file.path(R.home("bin"), "R"), " CMD config FC"), intern = TRUE), "--version"))) 2024-08-22T04:23:06.0793826Z cat("::endgroup::\n") 2024-08-22T04:23:06.0800102Z shell: C:\R\bin\Rscript.EXE {0} 2024-08-22T04:23:06.0800391Z env: 2024-08-22T04:23:06.0800582Z _R_INSTALL_TIME_PATCHES_: no 2024-08-22T04:23:06.0800865Z R_LIBS_USER: D:\a\_temp\Library 2024-08-22T04:23:06.0801133Z TZ: UTC 2024-08-22T04:23:06.0801326Z _R_CHECK_SYSTEM_CLOCK_: FALSE 2024-08-22T04:23:06.0801586Z NOT_CRAN: true 2024-08-22T04:23:06.0801878Z RSPM: https://packagemanager.posit.co/cran/latest 2024-08-22T04:23:06.0802408Z RENV_CONFIG_REPOS_OVERRIDE: https://packagemanager.posit.co/cran/latest 2024-08-22T04:23:06.0802853Z ##[endgroup] 2024-08-22T04:23:06.2468663Z ##[group]Compiler information 2024-08-22T04:23:06.2469506Z -- $(CC) --version ------------------------------------------------------ 2024-08-22T04:23:07.3710103Z gcc.exe (GCC) 13.2.0 2024-08-22T04:23:07.3710952Z Copyright (C) 2023 Free Software Foundation, Inc. 2024-08-22T04:23:07.3711791Z This is free software; see the source for copying conditions. There is NO 2024-08-22T04:23:07.3712720Z warranty; not even for MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. 2024-08-22T04:23:07.3713129Z 2024-08-22T04:23:07.3719768Z -- $(CXX) --version ---------------------------------------------------- 2024-08-22T04:23:08.0004787Z G__~1.EXE (GCC) 13.2.0 2024-08-22T04:23:08.0005558Z Copyright (C) 2023 Free Software Foundation, Inc. 2024-08-22T04:23:08.0006827Z This is free software; see the source for copying conditions. There is NO 2024-08-22T04:23:08.0008042Z warranty; not even for MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. 2024-08-22T04:23:08.0008724Z 2024-08-22T04:23:08.0012734Z -- $(FC) --version ------------------------------------------------------ 2024-08-22T04:23:08.6190657Z GNU Fortran (GCC) 13.2.0 2024-08-22T04:23:08.6191514Z Copyright (C) 2023 Free Software Foundation, Inc. 2024-08-22T04:23:08.6192403Z This is free software; see the source for copying conditions. There is NO 2024-08-22T04:23:08.6193155Z warranty; not even for MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. 2024-08-22T04:23:08.6193569Z 2024-08-22T04:23:08.6197620Z ##[endgroup] 2024-08-22T04:23:08.6371180Z ##[group]Run # 2024-08-22T04:23:08.6371404Z # 2024-08-22T04:23:08.6371645Z cat("::group::R session information\n") 2024-08-22T04:23:08.6371983Z sessionInfo() 2024-08-22T04:23:08.6372223Z cat("::endgroup::\n") 2024-08-22T04:23:08.6377433Z shell: C:\R\bin\Rscript.EXE {0} 2024-08-22T04:23:08.6377704Z env: 2024-08-22T04:23:08.6377898Z _R_INSTALL_TIME_PATCHES_: no 2024-08-22T04:23:08.6378201Z R_LIBS_USER: D:\a\_temp\Library 2024-08-22T04:23:08.6378465Z TZ: UTC 2024-08-22T04:23:08.6378664Z _R_CHECK_SYSTEM_CLOCK_: FALSE 2024-08-22T04:23:08.6378923Z NOT_CRAN: true 2024-08-22T04:23:08.6379212Z RSPM: https://packagemanager.posit.co/cran/latest 2024-08-22T04:23:08.6379872Z RENV_CONFIG_REPOS_OVERRIDE: https://packagemanager.posit.co/cran/latest 2024-08-22T04:23:08.6380322Z ##[endgroup] 2024-08-22T04:23:08.8026341Z ##[group]R session information 2024-08-22T04:23:08.8134145Z R Under development (unstable) (2024-08-20 r87029 ucrt) 2024-08-22T04:23:08.8134977Z Platform: x86_64-w64-mingw32/x64 2024-08-22T04:23:08.8135446Z Running under: Windows Server 2022 x64 (build 20348) 2024-08-22T04:23:08.8135726Z 2024-08-22T04:23:08.8135852Z Matrix products: default 2024-08-22T04:23:08.8136068Z 2024-08-22T04:23:08.8136077Z 2024-08-22T04:23:08.8136196Z locale: 2024-08-22T04:23:08.8136660Z [1] LC_COLLATE=English_United States.utf8 2024-08-22T04:23:08.8137314Z [2] LC_CTYPE=English_United States.utf8 2024-08-22T04:23:08.8137969Z [3] LC_MONETARY=English_United States.utf8 2024-08-22T04:23:08.8138596Z [4] LC_NUMERIC=C 2024-08-22T04:23:08.8139246Z [5] LC_TIME=English_United States.utf8 2024-08-22T04:23:08.8139566Z 2024-08-22T04:23:08.8139730Z time zone: UTC 2024-08-22T04:23:08.8140127Z tzcode source: internal 2024-08-22T04:23:08.8140393Z 2024-08-22T04:23:08.8140567Z attached base packages: 2024-08-22T04:23:08.8141282Z [1] stats graphics grDevices utils datasets methods base 2024-08-22T04:23:08.8141668Z 2024-08-22T04:23:08.8141928Z loaded via a namespace (and not attached): 2024-08-22T04:23:08.8142535Z [1] compiler_4.5.0 2024-08-22T04:23:08.8143041Z ##[endgroup] 2024-08-22T04:23:08.8319726Z ##[group]Run # 2024-08-22T04:23:08.8319966Z # 2024-08-22T04:23:08.8320217Z cat("::group::More R information\n") 2024-08-22T04:23:08.8320739Z writeLines("-- capabilities() -------------------------------------------------------") 2024-08-22T04:23:08.8321235Z capabilities() 2024-08-22T04:23:08.8321682Z writeLines("-- extSoftVersion() -----------------------------------------------------") 2024-08-22T04:23:08.8322174Z extSoftVersion() 2024-08-22T04:23:08.8322598Z writeLines("-- l10n_info() ----------------------------------------------------------") 2024-08-22T04:23:08.8323049Z l10n_info() 2024-08-22T04:23:08.8323476Z writeLines("-- La_version(), La_library() -------------------------------------------") 2024-08-22T04:23:08.8323938Z La_version() 2024-08-22T04:23:08.8324169Z La_library() 2024-08-22T04:23:08.8324566Z writeLines("-- grSoftVersion() ------------------------------------------------------") 2024-08-22T04:23:08.8325019Z grSoftVersion() 2024-08-22T04:23:08.8325426Z writeLines("-- pcre_config() --------------------------------------------------------") 2024-08-22T04:23:08.8325871Z pcre_config() 2024-08-22T04:23:08.8326271Z writeLines("-- libcurlVersion() -----------------------------------------------------") 2024-08-22T04:23:08.8326732Z libcurlVersion() 2024-08-22T04:23:08.8326988Z cat("::endgroup::\n") 2024-08-22T04:23:08.8332023Z shell: C:\R\bin\Rscript.EXE {0} 2024-08-22T04:23:08.8332313Z env: 2024-08-22T04:23:08.8332505Z _R_INSTALL_TIME_PATCHES_: no 2024-08-22T04:23:08.8332796Z R_LIBS_USER: D:\a\_temp\Library 2024-08-22T04:23:08.8333062Z TZ: UTC 2024-08-22T04:23:08.8333255Z _R_CHECK_SYSTEM_CLOCK_: FALSE 2024-08-22T04:23:08.8333519Z NOT_CRAN: true 2024-08-22T04:23:08.8333814Z RSPM: https://packagemanager.posit.co/cran/latest 2024-08-22T04:23:08.8334324Z RENV_CONFIG_REPOS_OVERRIDE: https://packagemanager.posit.co/cran/latest 2024-08-22T04:23:08.8334758Z ##[endgroup] 2024-08-22T04:23:09.0048295Z ##[group]More R information 2024-08-22T04:23:09.0049508Z -- capabilities() ------------------------------------------------------- 2024-08-22T04:23:09.0050848Z jpeg png tiff tcltk X11 aqua 2024-08-22T04:23:09.0051725Z TRUE TRUE TRUE TRUE FALSE FALSE 2024-08-22T04:23:09.0052626Z http/ftp sockets libxml fifo cledit iconv 2024-08-22T04:23:09.0053592Z TRUE TRUE FALSE TRUE FALSE TRUE 2024-08-22T04:23:09.0054343Z NLS Rprof profmem cairo ICU long.double 2024-08-22T04:23:09.0055187Z TRUE TRUE TRUE TRUE TRUE TRUE 2024-08-22T04:23:09.0055777Z libcurl 2024-08-22T04:23:09.0056074Z TRUE 2024-08-22T04:23:09.0056796Z -- extSoftVersion() ----------------------------------------------------- 2024-08-22T04:23:09.0057527Z zlib bzlib xz 2024-08-22T04:23:09.0058445Z "1.3.1" "1.0.8, 13-Jul-2019" "5.4.6" 2024-08-22T04:23:09.0059300Z libdeflate PCRE ICU 2024-08-22T04:23:09.0060238Z "1.19" "10.43 2024-02-16" "74.2" 2024-08-22T04:23:09.0060808Z TRE iconv readline 2024-08-22T04:23:09.0061355Z "TRE 0.8.0 R_fixes (BSD)" "win_iconv" "" 2024-08-22T04:23:09.0061951Z BLAS 2024-08-22T04:23:09.0062209Z "" 2024-08-22T04:23:09.0062855Z -- l10n_info() ---------------------------------------------------------- 2024-08-22T04:23:09.0063452Z $MBCS 2024-08-22T04:23:09.0063706Z [1] TRUE 2024-08-22T04:23:09.0063820Z 2024-08-22T04:23:09.0063944Z $`UTF-8` 2024-08-22T04:23:09.0064144Z [1] TRUE 2024-08-22T04:23:09.0064253Z 2024-08-22T04:23:09.0064371Z $`Latin-1` 2024-08-22T04:23:09.0064555Z [1] FALSE 2024-08-22T04:23:09.0064673Z 2024-08-22T04:23:09.0064752Z $codepage 2024-08-22T04:23:09.0064942Z [1] 65001 2024-08-22T04:23:09.0065045Z 2024-08-22T04:23:09.0065146Z $system.codepage 2024-08-22T04:23:09.0065348Z [1] 65001 2024-08-22T04:23:09.0065454Z 2024-08-22T04:23:09.0065762Z -- La_version(), La_library() ------------------------------------------- 2024-08-22T04:23:09.0066212Z [1] "3.12.0" 2024-08-22T04:23:09.0066405Z [1] "" 2024-08-22T04:23:09.0066816Z -- grSoftVersion() ------------------------------------------------------ 2024-08-22T04:23:09.0864229Z cairo cairoFT pango 2024-08-22T04:23:09.0865290Z "1.18.0" "" "" 2024-08-22T04:23:09.0866065Z libpng jpeg libtiff 2024-08-22T04:23:09.0866686Z "1.6.42" "9.6" "LIBTIFF, Version 4.6.0" 2024-08-22T04:23:09.0867523Z -- pcre_config() -------------------------------------------------------- 2024-08-22T04:23:09.0868228Z UTF-8 Unicode properties JIT stack 2024-08-22T04:23:09.0868817Z TRUE TRUE FALSE FALSE 2024-08-22T04:23:09.0869457Z -- libcurlVersion() ----------------------------------------------------- 2024-08-22T04:23:09.3088467Z [1] "8.6.0" 2024-08-22T04:23:09.3088882Z attr(,"ssl_version") 2024-08-22T04:23:09.3089335Z [1] "OpenSSL/3.2.1 (Schannel)" 2024-08-22T04:23:09.3089804Z attr(,"libssh_version") 2024-08-22T04:23:09.3090198Z [1] "libssh2/1.11.0" 2024-08-22T04:23:09.3090573Z attr(,"protocols") 2024-08-22T04:23:09.3091114Z [1] "dict" "file" "ftp" "ftps" "gopher" "gophers" "http" 2024-08-22T04:23:09.3091731Z [8] "https" "imap" "imaps" "ldap" "ldaps" "mqtt" "pop3" 2024-08-22T04:23:09.3092345Z [15] "pop3s" "rtsp" "scp" "sftp" "smb" "smbs" "smtp" 2024-08-22T04:23:09.3092807Z [22] "smtps" "telnet" "tftp" 2024-08-22T04:23:09.3093382Z ##[endgroup] 2024-08-22T04:23:09.3265121Z ##[group]Run # 2024-08-22T04:23:09.3265338Z # 2024-08-22T04:23:09.3265555Z cat("::group::R CMD config\n") 2024-08-22T04:23:09.3266027Z system(paste0(file.path(R.home("bin"), "R"), " CMD config --all")) 2024-08-22T04:23:09.3266610Z cat("::endgroup::\n") 2024-08-22T04:23:09.3272166Z shell: C:\R\bin\Rscript.EXE {0} 2024-08-22T04:23:09.3272461Z env: 2024-08-22T04:23:09.3272649Z _R_INSTALL_TIME_PATCHES_: no 2024-08-22T04:23:09.3272925Z R_LIBS_USER: D:\a\_temp\Library 2024-08-22T04:23:09.3273200Z TZ: UTC 2024-08-22T04:23:09.3273395Z _R_CHECK_SYSTEM_CLOCK_: FALSE 2024-08-22T04:23:09.3273659Z NOT_CRAN: true 2024-08-22T04:23:09.3273958Z RSPM: https://packagemanager.posit.co/cran/latest 2024-08-22T04:23:09.3274473Z RENV_CONFIG_REPOS_OVERRIDE: https://packagemanager.posit.co/cran/latest 2024-08-22T04:23:09.3274913Z ##[endgroup] 2024-08-22T04:23:09.4914665Z ##[group]R CMD config 2024-08-22T04:23:09.7406930Z CC = gcc 2024-08-22T04:23:09.7683438Z CFLAGS = -O2 -Wall -mfpmath=sse -msse2 -mstackrealign 2024-08-22T04:23:09.7952490Z CPICFLAGS = 2024-08-22T04:23:09.8226346Z CPPFLAGS = 2024-08-22T04:23:09.8525037Z CC17 = gcc 2024-08-22T04:23:09.8818027Z C17FLAGS = -O2 -Wall -std=gnu17 -mfpmath=sse -msse2 -mstackrealign 2024-08-22T04:23:09.9109746Z CC23 = gcc 2024-08-22T04:23:09.9395344Z C23FLAGS = -O2 -Wall -std=gnu2x -mfpmath=sse -msse2 -mstackrealign 2024-08-22T04:23:09.9673666Z CC90 = gcc 2024-08-22T04:23:09.9955317Z C90FLAGS = -O2 -Wall -std=gnu90 -mfpmath=sse -msse2 -mstackrealign 2024-08-22T04:23:10.0232005Z CC99 = gcc 2024-08-22T04:23:10.0507810Z C99FLAGS = -O2 -Wall -std=gnu99 -mfpmath=sse -msse2 -mstackrealign 2024-08-22T04:23:10.0778861Z CXX = g++ -std=gnu++17 2024-08-22T04:23:10.1050088Z CXXFLAGS = -O2 -Wall -mfpmath=sse -msse2 -mstackrealign 2024-08-22T04:23:10.1323544Z CXXPICFLAGS = 2024-08-22T04:23:10.1595673Z CXX11 = g++ 2024-08-22T04:23:10.1864348Z CXX11STD = -std=gnu++11 2024-08-22T04:23:10.2140840Z CXX11FLAGS = -O2 -Wall -mfpmath=sse -msse2 -mstackrealign 2024-08-22T04:23:10.2413349Z CXX11PICFLAGS = 2024-08-22T04:23:10.2688816Z CXX14 = g++ 2024-08-22T04:23:10.2959499Z CXX14STD = -std=gnu++14 2024-08-22T04:23:10.3235751Z CXX14FLAGS = -O2 -Wall -mfpmath=sse -msse2 -mstackrealign 2024-08-22T04:23:10.3506293Z CXX14PICFLAGS = 2024-08-22T04:23:10.3779258Z CXX17 = g++ 2024-08-22T04:23:10.4053991Z CXX17STD = -std=gnu++17 2024-08-22T04:23:10.4330868Z CXX17FLAGS = -O2 -Wall -mfpmath=sse -msse2 -mstackrealign 2024-08-22T04:23:10.4612146Z CXX17PICFLAGS = 2024-08-22T04:23:10.4886617Z CXX20 = g++ 2024-08-22T04:23:10.5155601Z CXX20STD = -std=gnu++20 2024-08-22T04:23:10.5425990Z CXX20FLAGS = -O2 -Wall -mfpmath=sse -msse2 -mstackrealign 2024-08-22T04:23:10.5701063Z CXX20PICFLAG = 2024-08-22T04:23:10.5980248Z CXX23 = g++ 2024-08-22T04:23:10.6252745Z CXX23STD = -std=gnu++2b 2024-08-22T04:23:10.6523848Z CXX23FLAGS = -O2 -Wall -mfpmath=sse -msse2 -mstackrealign 2024-08-22T04:23:10.6803276Z CXX23PICFLAGS = 2024-08-22T04:23:10.7094079Z DYLIB_EXT = .dll 2024-08-22T04:23:10.7382099Z DYLIB_LD = gcc 2024-08-22T04:23:10.7657374Z DYLIB_LDFLAGS = -shared 2024-08-22T04:23:10.7940865Z FC = gfortran 2024-08-22T04:23:10.8215738Z FFLAGS = -O2 -mfpmath=sse -msse2 -mstackrealign 2024-08-22T04:23:10.8497148Z FPICFLAGS = 2024-08-22T04:23:10.8783737Z FLIBS = -lgfortran -lm -lquadmath 2024-08-22T04:23:10.9066185Z FCFLAGS = -O2 -mfpmath=sse -msse2 -mstackrealign 2024-08-22T04:23:10.9342341Z SAFE_FFLAGS = -O2 -msse2 -mfpmath=sse 2024-08-22T04:23:10.9623222Z OBJC = gcc 2024-08-22T04:23:10.9912561Z OBJCFLAGS = -O2 2024-08-22T04:23:11.0183855Z JAVA = 2024-08-22T04:23:11.0465578Z JAVAC = 2024-08-22T04:23:11.0741187Z JAVAH = 2024-08-22T04:23:11.1016622Z JAR = 2024-08-22T04:23:11.1292662Z JAVA_HOME = C:\hostedtoolcache\windows\Java_Temurin-Hotspot_jdk\8.0.422-5\x64 2024-08-22T04:23:11.1634766Z JAVA_LIBS = -LC:\hostedtoolcache\windows\Java_Temurin-Hotspot_jdk\8.0.422-5\x64/bin/client -ljvm -ljvm-w32 2024-08-22T04:23:11.1978186Z JAVA_CPPFLAGS = -IC:\hostedtoolcache\windows\Java_Temurin-Hotspot_jdk\8.0.422-5\x64/../include -IC:\hostedtoolcache\windows\Java_Temurin-Hotspot_jdk\8.0.422-5\x64/../include/win32 2024-08-22T04:23:11.2257542Z LDFLAGS = 2024-08-22T04:23:11.2535069Z SHLIB_CFLAGS = 2024-08-22T04:23:11.2809369Z SHLIB_CXXFLAGS = 2024-08-22T04:23:11.3081818Z SHLIB_CXXLD = g++ -std=gnu++17 2024-08-22T04:23:11.3356697Z SHLIB_CXXLDFLAGS = -shared 2024-08-22T04:23:11.3626927Z SHLIB_CXX11LD = g++ 2024-08-22T04:23:11.3902326Z SHLIB_CXX11LDFLAGS = -shared 2024-08-22T04:23:11.4174154Z SHLIB_CXX14LD = g++ 2024-08-22T04:23:11.4451310Z SHLIB_CXX14LDFLAGS = -shared 2024-08-22T04:23:11.4731946Z SHLIB_CXX17LD = g++ 2024-08-22T04:23:11.5009084Z SHLIB_CXX17LDFLAGS = -shared 2024-08-22T04:23:11.5345144Z SHLIB_CXX20LD = g++ 2024-08-22T04:23:11.5594247Z SHLIB_CXX20LDFLAGS = -shared 2024-08-22T04:23:11.5867906Z SHLIB_CXX23LD = g++ 2024-08-22T04:23:11.6143226Z SHLIB_CXX23LDFLAGS = -shared 2024-08-22T04:23:11.6416309Z SHLIB_EXT = .dll 2024-08-22T04:23:11.6687789Z SHLIB_FFLAGS = 2024-08-22T04:23:11.6961500Z SHLIB_LD = gcc 2024-08-22T04:23:11.7231548Z SHLIB_LDFLAGS = -shared 2024-08-22T04:23:11.7569332Z TCLTK_CPPFLAGS = -I C:/R/Tcl/include -DWin32 2024-08-22T04:23:11.7919436Z TCLTK_LIBS = -LC:/R/Tcl/bin -ltcl86 -ltk86 2024-08-22T04:23:11.8265254Z BLAS_LIBS = -LC:/R/bin/x64 -lRblas 2024-08-22T04:23:11.8616213Z LAPACK_LIBS = -LC:/R/bin/x64 -lRlapack 2024-08-22T04:23:11.8896125Z MAKE = make 2024-08-22T04:23:11.9175276Z LIBnn = lib 2024-08-22T04:23:11.9448861Z AR = ar 2024-08-22T04:23:11.9718595Z NM = nm 2024-08-22T04:23:11.9994119Z RANLIB = ranlib 2024-08-22T04:23:12.0267474Z LTO = 2024-08-22T04:23:12.0539304Z LTO_FC = 2024-08-22T04:23:12.0815701Z LTO_LD = 2024-08-22T04:23:12.1096007Z LOCAL_SOFT = C:/rtools44/x86_64-w64-mingw32.static.posix 2024-08-22T04:23:12.1380120Z R_TOOLS_SOFT = C:/rtools44/x86_64-w64-mingw32.static.posix 2024-08-22T04:23:12.1654456Z COMPILED_BY = gcc-13.2.0 2024-08-22T04:23:12.1948038Z OBJDUMP = objdump 2024-08-22T04:23:12.1960612Z 2024-08-22T04:23:12.1961031Z ## The following variables are defunct 2024-08-22T04:23:12.1962742Z CPP CXXCPP 2024-08-22T04:23:12.2003133Z [1] 0 2024-08-22T04:23:12.2003917Z ##[endgroup] 2024-08-22T04:23:12.2275135Z ##[group]Run r-hub/actions/setup-deps@v1 2024-08-22T04:23:12.2275612Z with: 2024-08-22T04:23:12.2276160Z job-config: {"label":"windows (R-devel)","name":"windows","os":"windows-latest","r-version":"devel"} 2024-08-22T04:23:12.2276860Z extra-packages: any::rcmdcheck 2024-08-22T04:23:12.2277212Z needs: check 2024-08-22T04:23:12.2277485Z pak-version: devel 2024-08-22T04:23:12.2277757Z env: 2024-08-22T04:23:12.2277986Z _R_INSTALL_TIME_PATCHES_: no 2024-08-22T04:23:12.2278326Z R_LIBS_USER: D:\a\_temp\Library 2024-08-22T04:23:12.2278657Z TZ: UTC 2024-08-22T04:23:12.2278895Z _R_CHECK_SYSTEM_CLOCK_: FALSE 2024-08-22T04:23:12.2279219Z NOT_CRAN: true 2024-08-22T04:23:12.2279586Z RSPM: https://packagemanager.posit.co/cran/latest 2024-08-22T04:23:12.2280220Z RENV_CONFIG_REPOS_OVERRIDE: https://packagemanager.posit.co/cran/latest 2024-08-22T04:23:12.2280761Z ##[endgroup] 2024-08-22T04:23:12.2376636Z ##[group]Run # Set user library location 2024-08-22T04:23:12.2377035Z # Set user library location 2024-08-22T04:23:12.2377405Z cat("::group::Set user library location\n") 2024-08-22T04:23:12.2377977Z dir.create(lib <- Sys.getenv("R_LIBS_USER"), showWarnings = FALSE, recursive = TRUE) 2024-08-22T04:23:12.2378722Z writeLines(paste0("R_LIBS_USER=", Sys.getenv("R_LIBS_USER")), Sys.getenv("GITHUB_ENV")) 2024-08-22T04:23:12.2379248Z cat("::endgroup::\n") 2024-08-22T04:23:12.2384028Z shell: C:\R\bin\Rscript.EXE {0} 2024-08-22T04:23:12.2384317Z env: 2024-08-22T04:23:12.2384509Z _R_INSTALL_TIME_PATCHES_: no 2024-08-22T04:23:12.2384852Z R_LIBS_USER: D:\a\_temp\Library 2024-08-22T04:23:12.2385130Z TZ: UTC 2024-08-22T04:23:12.2385329Z _R_CHECK_SYSTEM_CLOCK_: FALSE 2024-08-22T04:23:12.2385599Z NOT_CRAN: true 2024-08-22T04:23:12.2385901Z RSPM: https://packagemanager.posit.co/cran/latest 2024-08-22T04:23:12.2386419Z RENV_CONFIG_REPOS_OVERRIDE: https://packagemanager.posit.co/cran/latest 2024-08-22T04:23:12.2386865Z ##[endgroup] 2024-08-22T04:23:12.4022625Z ##[group]Set user library location 2024-08-22T04:23:12.4026548Z ##[endgroup] 2024-08-22T04:23:12.4198320Z ##[group]Run # If there is an RHUB repo, then we use that as the cach version. 2024-08-22T04:23:12.4198970Z # If there is an RHUB repo, then we use that as the cach version. 2024-08-22T04:23:12.4199558Z # PAckages using the same repo are compatible by default. 2024-08-22T04:23:12.4200014Z repo <- getOption("repos")["RHUB"] 2024-08-22T04:23:12.4200333Z if (!is.na(repo)) { 2024-08-22T04:23:12.4200599Z  cv <- sub( 2024-08-22T04:23:12.4200976Z  "https://raw.githubusercontent.com/r-hub/repos/main/", 2024-08-22T04:23:12.4201383Z  "", 2024-08-22T04:23:12.4201593Z  repo, 2024-08-22T04:23:12.4201820Z  fixed = TRUE 2024-08-22T04:23:12.4202052Z  ) 2024-08-22T04:23:12.4202249Z } else { 2024-08-22T04:23:12.4202475Z  cv <- "1" 2024-08-22T04:23:12.4202684Z } 2024-08-22T04:23:12.4202919Z ev <- paste0("cache-version=", cv) 2024-08-22T04:23:12.4203397Z cat(ev, sep = "\n", append = TRUE, file = Sys.getenv("GITHUB_OUTPUT")) 2024-08-22T04:23:12.4208472Z shell: C:\R\bin\Rscript.EXE {0} 2024-08-22T04:23:12.4208753Z env: 2024-08-22T04:23:12.4208946Z _R_INSTALL_TIME_PATCHES_: no 2024-08-22T04:23:12.4209229Z R_LIBS_USER: D:\a\_temp\Library 2024-08-22T04:23:12.4209494Z TZ: UTC 2024-08-22T04:23:12.4209688Z _R_CHECK_SYSTEM_CLOCK_: FALSE 2024-08-22T04:23:12.4209949Z NOT_CRAN: true 2024-08-22T04:23:12.4210243Z RSPM: https://packagemanager.posit.co/cran/latest 2024-08-22T04:23:12.4210768Z RENV_CONFIG_REPOS_OVERRIDE: https://packagemanager.posit.co/cran/latest 2024-08-22T04:23:12.4211216Z ##[endgroup] 2024-08-22T04:23:12.6047543Z ##[group]Run # If input is set, we use that. Otherwise if env var is set, we use that. 2024-08-22T04:23:12.6049856Z # If input is set, we use that. Otherwise if env var is set, we use that. 2024-08-22T04:23:12.6050411Z # Otherwise '"all"'. 2024-08-22T04:23:12.6050691Z inp <- "" 2024-08-22T04:23:12.6051023Z ev <- Sys.getenv("RHUB_ACTIONS_DEPS_DEPENDENCIES") 2024-08-22T04:23:12.6051406Z if (inp != "") { 2024-08-22T04:23:12.6051655Z  dt <- inp 2024-08-22T04:23:12.6051878Z  ns <- "check" 2024-08-22T04:23:12.6052131Z } else if (ev != "") { 2024-08-22T04:23:12.6052399Z  dt <- ev 2024-08-22T04:23:12.6052612Z  ns <- "" 2024-08-22T04:23:12.6052828Z } else { 2024-08-22T04:23:12.6053037Z  dt <- '"all"' 2024-08-22T04:23:12.6053263Z  ns <- "check" 2024-08-22T04:23:12.6053486Z } 2024-08-22T04:23:12.6053711Z ev1 <- paste0("dep-types=", dt) 2024-08-22T04:23:12.6054187Z cat(ev1, sep = "\n", append = TRUE, file = Sys.getenv("GITHUB_OUTPUT")) 2024-08-22T04:23:12.6054660Z ev2 <- paste0("needs=", ns) 2024-08-22T04:23:12.6055101Z cat(ev2, sep = "\n", append = TRUE, file = Sys.getenv("GITHUB_OUTPUT")) 2024-08-22T04:23:12.6060136Z shell: C:\R\bin\Rscript.EXE {0} 2024-08-22T04:23:12.6060427Z env: 2024-08-22T04:23:12.6060619Z _R_INSTALL_TIME_PATCHES_: no 2024-08-22T04:23:12.6060903Z R_LIBS_USER: D:\a\_temp\Library 2024-08-22T04:23:12.6061169Z TZ: UTC 2024-08-22T04:23:12.6061360Z _R_CHECK_SYSTEM_CLOCK_: FALSE 2024-08-22T04:23:12.6061639Z NOT_CRAN: true 2024-08-22T04:23:12.6061944Z RSPM: https://packagemanager.posit.co/cran/latest 2024-08-22T04:23:12.6062467Z RENV_CONFIG_REPOS_OVERRIDE: https://packagemanager.posit.co/cran/latest 2024-08-22T04:23:12.6062908Z ##[endgroup] 2024-08-22T04:23:12.8000892Z ##[group]Run r-lib/actions/setup-r-dependencies@v2 2024-08-22T04:23:12.8001252Z with: 2024-08-22T04:23:12.8001451Z cache-version: 1 2024-08-22T04:23:12.8001688Z extra-packages: any::rcmdcheck 2024-08-22T04:23:12.8001985Z needs: check 2024-08-22T04:23:12.8002198Z pak-version: devel 2024-08-22T04:23:12.8002426Z dependencies: "all" 2024-08-22T04:23:12.8002670Z install-pandoc: true 2024-08-22T04:23:12.8002913Z cache: true 2024-08-22T04:23:12.8003132Z packages: deps::., any::sessioninfo 2024-08-22T04:23:12.8003433Z working-directory: . 2024-08-22T04:23:12.8003665Z upgrade: FALSE 2024-08-22T04:23:12.8003883Z lockfile-create-lib: NULL 2024-08-22T04:23:12.8004152Z pandoc-version: 3.1.11 2024-08-22T04:23:12.8004400Z install-quarto: auto 2024-08-22T04:23:12.8004628Z quarto-version: release 2024-08-22T04:23:12.8004865Z env: 2024-08-22T04:23:12.8005063Z _R_INSTALL_TIME_PATCHES_: no 2024-08-22T04:23:12.8005334Z R_LIBS_USER: D:\a\_temp\Library 2024-08-22T04:23:12.8005608Z TZ: UTC 2024-08-22T04:23:12.8005811Z _R_CHECK_SYSTEM_CLOCK_: FALSE 2024-08-22T04:23:12.8006070Z NOT_CRAN: true 2024-08-22T04:23:12.8006369Z RSPM: https://packagemanager.posit.co/cran/latest 2024-08-22T04:23:12.8006951Z RENV_CONFIG_REPOS_OVERRIDE: https://packagemanager.posit.co/cran/latest 2024-08-22T04:23:12.8007395Z R_KEEP_PKG_SOURCE: yes 2024-08-22T04:23:12.8007641Z ##[endgroup] 2024-08-22T04:23:12.8107595Z ##[group]Run # Set site library path 2024-08-22T04:23:12.8107954Z # Set site library path 2024-08-22T04:23:12.8108294Z cat("::group::Set site library path\n") 2024-08-22T04:23:12.8108689Z if (Sys.getenv("RENV_PROJECT") != "") { 2024-08-22T04:23:12.8109171Z  message("renv project detected, no need to set R_LIBS_SITE") 2024-08-22T04:23:12.8109874Z  cat(sprintf("R_LIB_FOR_PAK=%s\n", .libPaths()[1]), file = Sys.getenv("GITHUB_ENV"), append = TRUE) 2024-08-22T04:23:12.8110428Z  q("no") 2024-08-22T04:23:12.8110639Z } 2024-08-22T04:23:12.8110868Z lib <- Sys.getenv("R_LIBS_SITE") 2024-08-22T04:23:12.8111186Z if (lib == "") { 2024-08-22T04:23:12.8112251Z  lib <- file.path(dirname(.Library), "site-library") 2024-08-22T04:23:12.8112909Z  cat(sprintf("R_LIBS_SITE=%s\n", lib), file = Sys.getenv("GITHUB_ENV"), append = TRUE) 2024-08-22T04:23:12.8113647Z  cat(sprintf("R_LIB_FOR_PAK=%s\n", lib), file = Sys.getenv("GITHUB_ENV"), append = TRUE) 2024-08-22T04:23:12.8114231Z  message("Setting R_LIBS_SITE to ", lib) 2024-08-22T04:23:12.8114567Z } else { 2024-08-22T04:23:12.8114876Z  message("R_LIBS_SITE is already set to ", lib) 2024-08-22T04:23:12.8115599Z  cat(sprintf("R_LIB_FOR_PAK=%s\n", strsplit(lib, .Platform$path.sep)[[1]][[1]]), file = Sys.getenv("GITHUB_ENV"), append = TRUE) 2024-08-22T04:23:12.8116232Z } 2024-08-22T04:23:12.8116439Z if (nchar("ok") == 0) { 2024-08-22T04:23:12.8116927Z  message("R_LIBS_USER GH env var is unset, setting now: ", Sys.getenv("R_LIBS_USER")) 2024-08-22T04:23:12.8117733Z  cat(sprintf("R_LIBS_USER=%s\n", Sys.getenv("R_LIBS_USER")), file = Sys.getenv("GITHUB_ENV"), append = TRUE) 2024-08-22T04:23:12.8118299Z } else { 2024-08-22T04:23:12.8118706Z  message("R_LIBS_USER GH env var is already set: ", Sys.getenv("R_LIBS_USER")) 2024-08-22T04:23:12.8119176Z } 2024-08-22T04:23:12.8119377Z cat("::endgroup::\n") 2024-08-22T04:23:12.8124094Z shell: C:\R\bin\Rscript.EXE {0} 2024-08-22T04:23:12.8124377Z env: 2024-08-22T04:23:12.8124572Z _R_INSTALL_TIME_PATCHES_: no 2024-08-22T04:23:12.8124859Z R_LIBS_USER: D:\a\_temp\Library 2024-08-22T04:23:12.8125131Z TZ: UTC 2024-08-22T04:23:12.8125331Z _R_CHECK_SYSTEM_CLOCK_: FALSE 2024-08-22T04:23:12.8125608Z NOT_CRAN: true 2024-08-22T04:23:12.8125910Z RSPM: https://packagemanager.posit.co/cran/latest 2024-08-22T04:23:12.8126438Z RENV_CONFIG_REPOS_OVERRIDE: https://packagemanager.posit.co/cran/latest 2024-08-22T04:23:12.8126915Z R_KEEP_PKG_SOURCE: yes 2024-08-22T04:23:12.8127155Z ##[endgroup] 2024-08-22T04:23:12.9751194Z ##[group]Set site library path 2024-08-22T04:23:12.9762886Z R_LIBS_SITE is already set to C:/R/site-library 2024-08-22T04:23:12.9769613Z R_LIBS_USER GH env var is already set: D:\a\_temp\Library 2024-08-22T04:23:12.9786725Z ##[endgroup] 2024-08-22T04:23:12.9955650Z ##[group]Run # Install pak 2024-08-22T04:23:12.9955941Z # Install pak 2024-08-22T04:23:12.9956203Z cat("::group::Install pak\n") 2024-08-22T04:23:12.9956545Z lib <- Sys.getenv("R_LIB_FOR_PAK") 2024-08-22T04:23:12.9956998Z dir.create(lib, showWarnings = FALSE, recursive = TRUE) 2024-08-22T04:23:12.9957509Z install.packages("pak", lib = lib, repos = sprintf( 2024-08-22T04:23:12.9957985Z  "https://r-lib.github.io/p/pak/%s/%s/%s/%s", 2024-08-22T04:23:12.9958346Z  "devel", 2024-08-22T04:23:12.9958582Z  .Platform$pkgType, 2024-08-22T04:23:12.9958848Z  R.Version()$os, 2024-08-22T04:23:12.9959098Z  R.Version()$arch 2024-08-22T04:23:12.9959342Z )) 2024-08-22T04:23:12.9959553Z cat("::endgroup::\n") 2024-08-22T04:23:12.9964326Z shell: C:\R\bin\Rscript.EXE {0} 2024-08-22T04:23:12.9964605Z env: 2024-08-22T04:23:12.9964803Z _R_INSTALL_TIME_PATCHES_: no 2024-08-22T04:23:12.9965214Z R_LIBS_USER: D:\a\_temp\Library 2024-08-22T04:23:12.9965489Z TZ: UTC 2024-08-22T04:23:12.9965691Z _R_CHECK_SYSTEM_CLOCK_: FALSE 2024-08-22T04:23:12.9965946Z NOT_CRAN: true 2024-08-22T04:23:12.9966241Z RSPM: https://packagemanager.posit.co/cran/latest 2024-08-22T04:23:12.9966765Z RENV_CONFIG_REPOS_OVERRIDE: https://packagemanager.posit.co/cran/latest 2024-08-22T04:23:12.9967215Z R_LIB_FOR_PAK: C:/R/site-library 2024-08-22T04:23:12.9967501Z R_KEEP_PKG_SOURCE: yes 2024-08-22T04:23:12.9967738Z ##[endgroup] 2024-08-22T04:23:13.1636099Z ##[group]Install pak 2024-08-22T04:23:13.5651370Z trying URL 'https://r-lib.github.io/p/pak/devel/win.binary/mingw32/x86_64/bin/windows/contrib/4.5/../../../../../../../mingw32/x86_64/pak_0.8.0.9000_R-4-5_x86_64-mingw32.zip' 2024-08-22T04:23:13.8927418Z Content type 'application/zip' length 8774551 bytes (8.4 MB) 2024-08-22T04:23:13.9157401Z ================================================== 2024-08-22T04:23:13.9157851Z downloaded 8.4 MB 2024-08-22T04:23:13.9158015Z 2024-08-22T04:23:14.3082759Z 2024-08-22T04:23:14.3083458Z The downloaded binary packages are in 2024-08-22T04:23:14.3084158Z C:\Users\runneradmin\AppData\Local\Temp\RtmpCIgMFl\downloaded_packages 2024-08-22T04:23:14.3084942Z ##[endgroup] 2024-08-22T04:23:14.3294852Z ##[group]Run # Dependency resolution 2024-08-22T04:23:14.3295205Z # Dependency resolution 2024-08-22T04:23:14.3295543Z cat("::group::Dependency resolution\n") 2024-08-22T04:23:14.3296185Z cat("os-version=", sessionInfo()$running, "\n", file = Sys.getenv("GITHUB_OUTPUT"), sep = "", append = TRUE) 2024-08-22T04:23:14.3296768Z r_version <- 2024-08-22T04:23:14.3297087Z  if (grepl("development", R.version.string)) { 2024-08-22T04:23:14.3297482Z  pdf(tempfile()) 2024-08-22T04:23:14.3297820Z  ge_ver <- attr(recordPlot(), "engineVersion") 2024-08-22T04:23:14.3298181Z  dev.off() 2024-08-22T04:23:14.3298663Z  paste0("R version ", getRversion(), " (ge:", ge_ver, "; iid:", .Internal(internalsID()), ")") 2024-08-22T04:23:14.3299176Z  } else { 2024-08-22T04:23:14.3299405Z  R.version.string 2024-08-22T04:23:14.3299664Z  } 2024-08-22T04:23:14.3300122Z cat("r-version=", r_version, "\n", file = Sys.getenv("GITHUB_OUTPUT"), sep = "", append = TRUE) 2024-08-22T04:23:14.3300831Z needs <- sprintf("Config/Needs/%s", strsplit("check", "[[:space:],]+")[[1]]) 2024-08-22T04:23:14.3301430Z deps <- strsplit("deps::., any::sessioninfo", "[[:space:],]+")[[1]] 2024-08-22T04:23:14.3301979Z extra_deps <- strsplit("any::rcmdcheck", "[[:space:],]+")[[1]] 2024-08-22T04:23:14.3302452Z dir.create(".github", showWarnings=FALSE) 2024-08-22T04:23:14.3302853Z Sys.setenv("PKGCACHE_HTTP_VERSION" = "2") 2024-08-22T04:23:14.3303297Z library(pak, lib.loc = Sys.getenv("R_LIB_FOR_PAK")) 2024-08-22T04:23:14.3303698Z pak::lockfile_create( 2024-08-22T04:23:14.3303970Z  c(deps, extra_deps), 2024-08-22T04:23:14.3304279Z  lockfile = ".github/pkg.lock", 2024-08-22T04:23:14.3304596Z  upgrade = (FALSE), 2024-08-22T04:23:14.3304891Z  dependencies = c(needs, ("all")), 2024-08-22T04:23:14.3305202Z  lib = NULL 2024-08-22T04:23:14.3305420Z ) 2024-08-22T04:23:14.3305613Z cat("::endgroup::\n") 2024-08-22T04:23:14.3305897Z cat("::group::Show Lockfile\n") 2024-08-22T04:23:14.3306260Z writeLines(readLines(".github/pkg.lock")) 2024-08-22T04:23:14.3306596Z cat("::endgroup::\n") 2024-08-22T04:23:14.3311270Z shell: C:\R\bin\Rscript.EXE {0} 2024-08-22T04:23:14.3311557Z env: 2024-08-22T04:23:14.3311765Z _R_INSTALL_TIME_PATCHES_: no 2024-08-22T04:23:14.3312040Z R_LIBS_USER: D:\a\_temp\Library 2024-08-22T04:23:14.3312311Z TZ: UTC 2024-08-22T04:23:14.3312510Z _R_CHECK_SYSTEM_CLOCK_: FALSE 2024-08-22T04:23:14.3312891Z NOT_CRAN: true 2024-08-22T04:23:14.3313196Z RSPM: https://packagemanager.posit.co/cran/latest 2024-08-22T04:23:14.3313731Z RENV_CONFIG_REPOS_OVERRIDE: https://packagemanager.posit.co/cran/latest 2024-08-22T04:23:14.3314207Z R_LIB_FOR_PAK: C:/R/site-library 2024-08-22T04:23:14.3314546Z R_KEEP_PKG_SOURCE: yes 2024-08-22T04:23:14.3314789Z ##[endgroup] 2024-08-22T04:23:14.4927499Z ##[group]Dependency resolution 2024-08-22T04:23:15.6634955Z ℹ Creating lockfile '.github/pkg.lock' 2024-08-22T04:23:16.1914668Z 2024-08-22T04:23:17.0933128Z ✔ Updated metadata database: 4.68 MB in 17 files. 2024-08-22T04:23:17.0940777Z 2024-08-22T04:23:17.0998959Z ℹ Creating lockfile '.github/pkg.lock' 2024-08-22T04:23:17.1001477Z ℹ R 4.5 x86_64-w64-mingw32 packages are missing from Bioconductor: Not Found (HTTP 404)., Not Found (HTTP 404)., Not Found (HTTP 404)., Not Found (HTTP 404)., and Not Found (HTTP 404). 2024-08-22T04:23:17.1214950Z ℹ Creating lockfile '.github/pkg.lock' 2024-08-22T04:23:17.1216286Z ℹ Updating metadata database 2024-08-22T04:23:27.4414979Z ✔ Updating metadata database ... done 2024-08-22T04:23:27.4422289Z 2024-08-22T04:23:29.1398908Z ℹ Creating lockfile '.github/pkg.lock' 2024-08-22T04:23:29.1399935Z ✔ Created lockfile '.github/pkg.lock' [13.5s] 2024-08-22T04:23:29.1408212Z 2024-08-22T04:23:29.2101292Z ##[endgroup] 2024-08-22T04:23:29.2101893Z ##[group]Show Lockfile 2024-08-22T04:23:29.2107999Z { 2024-08-22T04:23:29.2108440Z "lockfile_version": 1, 2024-08-22T04:23:29.2109057Z "os": "Windows Server 2022 x64 (build 20348)", 2024-08-22T04:23:29.2110045Z "r_version": "R Under development 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2024-08-22T04:23:29.2116224Z "platform": "source", 2024-08-22T04:23:29.2116501Z "rversion": "*", 2024-08-22T04:23:29.2116766Z "directpkg": true, 2024-08-22T04:23:29.2117046Z "license": "GPL (>=2)", 2024-08-22T04:23:29.2117614Z "dep_types": ["Depends", "Imports", "LinkingTo", "Suggests", "Enhances", "Config/Needs/check"], 2024-08-22T04:23:29.2118138Z "params": [], 2024-08-22T04:23:29.2118475Z "install_args": "--no-multiarch", 2024-08-22T04:23:29.2118798Z "sysreqs": "" 2024-08-22T04:23:29.2119003Z }, 2024-08-22T04:23:29.2119171Z { 2024-08-22T04:23:29.2119372Z "ref": "Devore7", 2024-08-22T04:23:29.2119632Z "package": "Devore7", 2024-08-22T04:23:29.2119913Z "version": "0.7.6", 2024-08-22T04:23:29.2120178Z "type": "standard", 2024-08-22T04:23:29.2120428Z "direct": false, 2024-08-22T04:23:29.2120676Z "binary": true, 2024-08-22T04:23:29.2120971Z "dependencies": ["MASS", "lattice"], 2024-08-22T04:23:29.2121305Z "vignettes": false, 2024-08-22T04:23:29.2121593Z "needscompilation": false, 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2024-08-22T04:23:29.4142473Z enableCrossOsArchive: false 2024-08-22T04:23:29.4142752Z fail-on-cache-miss: false 2024-08-22T04:23:29.4143003Z lookup-only: false 2024-08-22T04:23:29.4143217Z env: 2024-08-22T04:23:29.4143413Z _R_INSTALL_TIME_PATCHES_: no 2024-08-22T04:23:29.4143685Z R_LIBS_USER: D:\a\_temp\Library 2024-08-22T04:23:29.4143957Z TZ: UTC 2024-08-22T04:23:29.4144159Z _R_CHECK_SYSTEM_CLOCK_: FALSE 2024-08-22T04:23:29.4144422Z NOT_CRAN: true 2024-08-22T04:23:29.4144719Z RSPM: https://packagemanager.posit.co/cran/latest 2024-08-22T04:23:29.4145240Z RENV_CONFIG_REPOS_OVERRIDE: https://packagemanager.posit.co/cran/latest 2024-08-22T04:23:29.4145693Z R_LIB_FOR_PAK: C:/R/site-library 2024-08-22T04:23:29.4145982Z R_KEEP_PKG_SOURCE: yes 2024-08-22T04:23:29.4146227Z ##[endgroup] 2024-08-22T04:23:30.1395750Z Cache not found for input keys: Windows Server 2022 x64 (build 20348)-R version 4.5.0 (ge:16; 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D:\a\_temp\Library 2024-08-22T04:23:30.1567514Z TZ: UTC 2024-08-22T04:23:30.1567708Z _R_CHECK_SYSTEM_CLOCK_: FALSE 2024-08-22T04:23:30.1567975Z NOT_CRAN: true 2024-08-22T04:23:30.1568273Z RSPM: https://packagemanager.posit.co/cran/latest 2024-08-22T04:23:30.1568796Z RENV_CONFIG_REPOS_OVERRIDE: https://packagemanager.posit.co/cran/latest 2024-08-22T04:23:30.1569262Z R_LIB_FOR_PAK: C:/R/site-library 2024-08-22T04:23:30.1569548Z R_KEEP_PKG_SOURCE: yes 2024-08-22T04:23:30.1569788Z ##[endgroup] 2024-08-22T04:23:30.3146549Z ##[group]Install/update packages 2024-08-22T04:23:31.3553106Z ℹ Installing lockfile '.github/pkg.lock' 2024-08-22T04:23:31.5112402Z 2024-08-22T04:23:31.5123033Z → Will install 38 packages. 2024-08-22T04:23:31.5290725Z → Will download 38 packages with unknown size. 2024-08-22T04:23:31.5700805Z + abind 1.4-5 [dl] 2024-08-22T04:23:31.5701440Z + callr 3.7.6 [dl] 2024-08-22T04:23:31.5701949Z + cli 3.6.3 [dl] 2024-08-22T04:23:31.5702487Z + curl 5.2.1 [dl] 2024-08-22T04:23:31.5703116Z + deldir 2.0-4 [dl] 2024-08-22T04:23:31.5703600Z + desc 1.4.3 [dl] 2024-08-22T04:23:31.5704076Z + Devore7 0.7.6 [dl] 2024-08-22T04:23:31.5704605Z + digest 0.6.37 [dl] 2024-08-22T04:23:31.5705219Z + goftest 1.2-3 [dl] 2024-08-22T04:23:31.5705755Z + pkgbuild 1.4.4 [dl] 2024-08-22T04:23:31.5706670Z + polyclip 1.10-7 [dl] 2024-08-22T04:23:31.5707212Z + prettyunits 1.2.0 [dl] 2024-08-22T04:23:31.5708687Z + processx 3.8.4 [dl] 2024-08-22T04:23:31.5709535Z + ps 1.7.7 [dl] 2024-08-22T04:23:31.5710071Z + R.cache 0.16.0 [dl] 2024-08-22T04:23:31.5710582Z + R.methodsS3 1.8.2 [dl] 2024-08-22T04:23:31.5711177Z + R.oo 1.26.0 [dl] 2024-08-22T04:23:31.5711690Z + R.rsp 0.46.0 [dl] 2024-08-22T04:23:31.5712200Z + R.utils 2.12.3 [dl] 2024-08-22T04:23:31.5712725Z + R6 2.5.1 [dl] 2024-08-22T04:23:31.5713258Z + rcmdcheck 1.4.0 [dl] 2024-08-22T04:23:31.5713804Z + rprojroot 2.0.4 [dl] 2024-08-22T04:23:31.5714358Z + sessioninfo 1.2.2 [dl] 2024-08-22T04:23:31.5715090Z + spatstat.data 3.1-2 [dl] 2024-08-22T04:23:31.5715774Z + spatstat.explore 3.3-2 [dl] 2024-08-22T04:23:31.5716389Z + spatstat.geom 3.3-2 [dl] 2024-08-22T04:23:31.5717004Z + spatstat.random 3.3-1 [dl] 2024-08-22T04:23:31.5717651Z + spatstat.sparse 3.1-0 [dl] 2024-08-22T04:23:31.5718299Z + spatstat.univar 3.0-0 [dl] 2024-08-22T04:23:31.5718923Z + spatstat.utils 3.1-0 [dl] 2024-08-22T04:23:31.5719466Z + tensor 1.5 [dl] 2024-08-22T04:23:31.5719993Z + withr 3.0.1 [dl] 2024-08-22T04:23:31.5720539Z + xopen 1.0.1 [dl] 2024-08-22T04:23:31.5720994Z 2024-08-22T04:23:31.6009527Z ℹ Getting 33 pkgs with unknown sizes 2024-08-22T04:23:31.8864054Z ✔ Cached copy of lattice 0.22-6 (x86_64-w64-mingw32) is the latest build 2024-08-22T04:23:31.9013036Z ✔ Cached copy of MASS 7.3-61 (x86_64-w64-mingw32) is the latest build 2024-08-22T04:23:31.9090731Z ✔ Cached copy of Matrix 1.7-0 (x86_64-w64-mingw32) is the latest build 2024-08-22T04:23:31.9167900Z ✔ Cached copy of nlme 3.1-166 (x86_64-w64-mingw32) is the latest build 2024-08-22T04:23:33.3460355Z ✔ Got R.cache 0.16.0 (i386+x86_64-w64-mingw32) (113.07 kB) 2024-08-22T04:23:33.3573011Z ✔ Got R.oo 1.26.0 (i386+x86_64-w64-mingw32) (992.80 kB) 2024-08-22T04:23:33.3724438Z ✔ Got R.rsp 0.46.0 (i386+x86_64-w64-mingw32) (1.47 MB) 2024-08-22T04:23:33.3838689Z ✔ Got R.utils 2.12.3 (i386+x86_64-w64-mingw32) (1.44 MB) 2024-08-22T04:23:33.4736578Z ✔ Got Devore7 0.7.6 (i386+x86_64-w64-mingw32) (989.36 kB) 2024-08-22T04:23:33.4857335Z ✔ Got R.methodsS3 1.8.2 (i386+x86_64-w64-mingw32) (84.74 kB) 2024-08-22T04:23:33.4972788Z ✔ Got abind 1.4-5 (i386+x86_64-w64-mingw32) (64.31 kB) 2024-08-22T04:23:33.5109805Z ✔ Got deldir 2.0-4 (x86_64-w64-mingw32) (289.27 kB) 2024-08-22T04:23:33.5228822Z ✔ Got digest 0.6.37 (x86_64-w64-mingw32) (223.12 kB) 2024-08-22T04:23:33.5345586Z ✔ Got goftest 1.2-3 (x86_64-w64-mingw32) (65.57 kB) 2024-08-22T04:23:33.5507506Z ✔ Got spatstat.random 3.3-1 (x86_64-w64-mingw32) (1.18 MB) 2024-08-22T04:23:33.5627839Z ✔ Got spatstat.sparse 3.1-0 (x86_64-w64-mingw32) (220.30 kB) 2024-08-22T04:23:33.5773146Z ✔ Got spatstat.univar 3.0-0 (x86_64-w64-mingw32) (241.41 kB) 2024-08-22T04:23:33.5892360Z ✔ Got spatstat.utils 3.1-0 (x86_64-w64-mingw32) (395.00 kB) 2024-08-22T04:23:33.6015707Z ✔ Got tensor 1.5 (i386+x86_64-w64-mingw32) (16.42 kB) 2024-08-22T04:23:33.6133595Z ✔ Got rcmdcheck 1.4.0 (i386+x86_64-w64-mingw32) (171.82 kB) 2024-08-22T04:23:33.6255557Z ✔ Got cli 3.6.3 (x86_64-w64-mingw32) (1.36 MB) 2024-08-22T04:23:33.6397228Z ✔ Got R6 2.5.1 (i386+x86_64-w64-mingw32) (84.88 kB) 2024-08-22T04:23:33.6517595Z ✔ Got callr 3.7.6 (i386+x86_64-w64-mingw32) (473.67 kB) 2024-08-22T04:23:33.6684334Z ✔ Got curl 5.2.1 (x86_64-w64-mingw32) (3.22 MB) 2024-08-22T04:23:33.6803819Z ✔ Got withr 3.0.1 (i386+x86_64-w64-mingw32) (231.35 kB) 2024-08-22T04:23:33.6924242Z ✔ Got xopen 1.0.1 (i386+x86_64-w64-mingw32) (27.44 kB) 2024-08-22T04:23:33.7064335Z ✔ Got polyclip 1.10-7 (x86_64-w64-mingw32) (402.28 kB) 2024-08-22T04:23:33.7145525Z ✖ Failed to download spatstat.explore 3.3-2 (x86_64-w64-mingw32) 2024-08-22T04:23:33.7264992Z ✔ Got desc 1.4.3 (i386+x86_64-w64-mingw32) (335.64 kB) 2024-08-22T04:23:33.7384952Z ✔ Got pkgbuild 1.4.4 (i386+x86_64-w64-mingw32) (203.97 kB) 2024-08-22T04:23:33.7503183Z ✔ Got prettyunits 1.2.0 (i386+x86_64-w64-mingw32) (155.37 kB) 2024-08-22T04:23:33.7684502Z ✔ Got processx 3.8.4 (x86_64-w64-mingw32) (688.70 kB) 2024-08-22T04:23:33.7804533Z ✔ Got ps 1.7.7 (x86_64-w64-mingw32) (558.20 kB) 2024-08-22T04:23:33.7925071Z ✔ Got rprojroot 2.0.4 (i386+x86_64-w64-mingw32) (114.96 kB) 2024-08-22T04:23:33.8047141Z ✔ Got sessioninfo 1.2.2 (i386+x86_64-w64-mingw32) (183.24 kB) 2024-08-22T04:23:33.8190070Z ✔ Got spatstat.geom 3.3-2 (x86_64-w64-mingw32) (3.99 MB) 2024-08-22T04:23:33.8335259Z ✔ Got spatstat.data 3.1-2 (i386+x86_64-w64-mingw32) (4.06 MB) 2024-08-22T04:23:33.9652978Z ✔ Installed Devore7 0.7.6 (60ms) 2024-08-22T04:23:34.0908315Z ✔ Installed R.cache 0.16.0 (47ms) 2024-08-22T04:23:34.1512160Z ✔ Installed R.methodsS3 1.8.2 (44ms) 2024-08-22T04:23:34.2403652Z ✔ Installed R.oo 1.26.0 (71ms) 2024-08-22T04:23:34.3434123Z ✔ Installed R.rsp 0.46.0 (87ms) 2024-08-22T04:23:34.4141468Z ✔ Installed R.utils 2.12.3 (55ms) 2024-08-22T04:23:34.4786716Z ✔ Installed abind 1.4-5 (46ms) 2024-08-22T04:23:34.5460042Z ✔ Installed deldir 2.0-4 (51ms) 2024-08-22T04:23:34.6184062Z ✔ Installed digest 0.6.37 (56ms) 2024-08-22T04:23:34.6849316Z ✔ Installed goftest 1.2-3 (49ms) 2024-08-22T04:23:34.7520884Z ✔ Installed polyclip 1.10-7 (51ms) 2024-08-22T04:23:34.8491711Z ✔ Installed spatstat.data 3.1-2 (81ms) 2024-08-22T04:23:37.3849678Z Error: 2024-08-22T04:23:37.3850193Z ! error in pak subprocess 2024-08-22T04:23:37.3850796Z Caused by error in `file(con, "rb")`: 2024-08-22T04:23:37.3851368Z ! cannot open the connection 2024-08-22T04:23:37.3851992Z --- 2024-08-22T04:23:37.3852517Z Backtrace: 2024-08-22T04:23:37.3853007Z 1. pak::lockfile_install(".github/pkg.lock") 2024-08-22T04:23:37.3853663Z 2. pak:::remote(function(...) { … 2024-08-22T04:23:37.3854178Z 3. err$throw(res$error) 2024-08-22T04:23:37.3854611Z --- 2024-08-22T04:23:37.3854911Z Subprocess backtrace: 2024-08-22T04:23:37.3855582Z 1. base::withCallingHandlers(cli_message = function(msg) { … 2024-08-22T04:23:37.3856543Z 2. get("lockfile_install_internal", asNamespace("pak"))(...) 2024-08-22T04:23:37.3857165Z 3. plan$install() 2024-08-22T04:23:37.3857935Z 4. pkgdepends::install_package_plan(plan, lib = private$library, num_workers = nw, … 2024-08-22T04:23:37.3858833Z 5. base::withCallingHandlers({ … 2024-08-22T04:23:37.3859359Z 6. pkgdepends:::start_task(state, task) 2024-08-22T04:23:37.3859984Z 7. pkgdepends:::start_task_install(state, task) 2024-08-22T04:23:37.3860875Z 8. pkgdepends:::make_install_process(filename, lib = lib, metadata = metadata) 2024-08-22T04:23:37.3861748Z 9. pkgdepends:::detect_package_archive_type(filename) 2024-08-22T04:23:37.3862418Z 10. base::readBin(file, what = "raw", n = 6) 2024-08-22T04:23:37.3862955Z 11. base::file(con, "rb") 2024-08-22T04:23:37.3863442Z 12. base::.handleSimpleError(function (e) … 2024-08-22T04:23:37.3864020Z 13. global h(simpleError(msg, call)) 2024-08-22T04:23:37.3864501Z Execution halted 2024-08-22T04:23:37.4350232Z ##[error]Process completed with exit code 1. 2024-08-22T04:23:37.4539041Z Post job cleanup. 2024-08-22T04:23:37.4756404Z Post job cleanup. 2024-08-22T04:23:37.4883154Z Post job cleanup. 2024-08-22T04:23:37.5000720Z Post job cleanup. 2024-08-22T04:23:37.7070236Z [command]"C:\Program Files\Git\bin\git.exe" version 2024-08-22T04:23:37.7278975Z git version 2.46.0.windows.1 2024-08-22T04:23:37.7344771Z Temporarily overriding HOME='D:\a\_temp\eb8289bd-5fd8-4f21-8a6d-e97ca164f76e' before making global git config changes 2024-08-22T04:23:37.7345838Z Adding repository directory to the temporary git global config as a safe directory 2024-08-22T04:23:37.7356216Z [command]"C:\Program Files\Git\bin\git.exe" config --global --add safe.directory D:\a\kanova\kanova 2024-08-22T04:23:37.7589848Z [command]"C:\Program Files\Git\bin\git.exe" config --local --name-only --get-regexp core\.sshCommand 2024-08-22T04:23:37.7863797Z [command]"C:\Program Files\Git\bin\git.exe" submodule foreach --recursive "sh -c \"git config --local --name-only --get-regexp 'core\.sshCommand' && git config --local --unset-all 'core.sshCommand' || :\"" 2024-08-22T04:23:38.1571118Z [command]"C:\Program Files\Git\bin\git.exe" config --local --name-only --get-regexp http\.https\:\/\/github\.com\/\.extraheader 2024-08-22T04:23:38.1766603Z http.https://github.com/.extraheader 2024-08-22T04:23:38.1802700Z [command]"C:\Program Files\Git\bin\git.exe" config --local --unset-all http.https://github.com/.extraheader 2024-08-22T04:23:38.2047998Z [command]"C:\Program Files\Git\bin\git.exe" submodule foreach --recursive "sh -c \"git config --local --name-only --get-regexp 'http\.https\:\/\/github\.com\/\.extraheader' && git config --local --unset-all 'http.https://github.com/.extraheader' || :\"" 2024-08-22T04:23:38.6191205Z Cleaning up orphan processes