System OS: Windows 11, Architecture: AMD64 Java Info: 17.0.10, OpenJDK 64-Bit Server VM, Eclipse Adoptium .NET Core Info: 6.0.33 Version info: FragPipe version 22.0 MSFragger version 4.1 IonQuant version 1.10.27 diaTracer version 1.1.5 Philosopher version 5.1.1 LCMS files: Experiment/Group: (if "spectral library generation" is enabled, all files will be analyzed together) - D:\20240927_SW-KF\PLD_method\raw\20240927_SW-KF_S1_PLD_Slot2-38_1_8058.d DIA - D:\20240927_SW-KF\PLD_method\raw\20240927_SW-KF_S1_sup_Slot2-37_1_8056.d DIA - D:\20240927_SW-KF\PLD_method\raw\20240927_SW-KF_S1_total_Slot2-36_1_8055.d DIA - D:\20240927_SW-KF\PLD_method\raw\20240927_SW-KF_S2_PLD_Slot2-41_1_8063.d DIA - D:\20240927_SW-KF\PLD_method\raw\20240927_SW-KF_S2_sup_Slot2-40_1_8061.d DIA - D:\20240927_SW-KF\PLD_method\raw\20240927_SW-KF_S2_total_Slot2-39_1_8060.d DIA 62 commands to execute: CheckCentroid C:\Users\dubia\OneDrive\Desktop\FragPipe-jre-22.0\fragpipe\jre\bin\java.exe -Xmx48G -cp C:\Users\dubia\OneDrive\Desktop\FragPipe-jre-22.0\fragpipe\lib\fragpipe-22.0.jar;C:\Users\dubia\OneDrive\Desktop\FragPipe-jre-22.0\fragpipe\tools\batmass-io-1.33.4.jar com.dmtavt.fragpipe.util.CheckCentroid D:\20240927_SW-KF\PLD_method\raw\20240927_SW-KF_S1_PLD_Slot2-38_1_8058.d 23 WorkspaceCleanInit [Work dir: D:\20240927_SW-KF\PLD_method\output] C:\Users\dubia\OneDrive\Desktop\FragPipe-jre-22.0\fragpipe\tools\Philosopher\philosopher-v5.1.1.exe workspace --clean --nocheck WorkspaceCleanInit [Work dir: D:\20240927_SW-KF\PLD_method\output] C:\Users\dubia\OneDrive\Desktop\FragPipe-jre-22.0\fragpipe\tools\Philosopher\philosopher-v5.1.1.exe workspace --init --nocheck --temp C:\Users\dubia\AppData\Local\Temp\295e6381-9ad7-4c19-8d8b-54ca50528c41 diaTracer [Work dir: D:\20240927_SW-KF\PLD_method\output] C:\Users\dubia\OneDrive\Desktop\FragPipe-jre-22.0\fragpipe\jre\bin\java.exe -Xmx48G -Dlibs.bruker.dir=C:\Users\dubia\OneDrive\Desktop\FragPipe-jre-22.0\fragpipe\lib\..\tools\MSFragger-4.1\ext\bruker -cp C:\Users\dubia\OneDrive\Desktop\FragPipe-jre-22.0\fragpipe\tools\batmass-io-1.33.4.jar;C:\Users\dubia\OneDrive\Desktop\FragPipe-jre-22.0\fragpipe\tools\diaTracer-1.1.5.jar diatracer.diaTracerMainClass --dFilePath D:\20240927_SW-KF\PLD_method\raw\20240927_SW-KF_S1_PLD_Slot2-38_1_8058.d --workDir D:\20240927_SW-KF\PLD_method\output --threadNum 23 --writeInter 0 --deltaApexIM 0.01 --deltaApexRT 3 --massDefectFilter 0 --massDefectOffset 0.1 --ms1MS2Corr 0.3 --RFMax 500 diaTracer [Work dir: D:\20240927_SW-KF\PLD_method\output] C:\Users\dubia\OneDrive\Desktop\FragPipe-jre-22.0\fragpipe\jre\bin\java.exe -Xmx48G -Dlibs.bruker.dir=C:\Users\dubia\OneDrive\Desktop\FragPipe-jre-22.0\fragpipe\lib\..\tools\MSFragger-4.1\ext\bruker -cp C:\Users\dubia\OneDrive\Desktop\FragPipe-jre-22.0\fragpipe\tools\batmass-io-1.33.4.jar;C:\Users\dubia\OneDrive\Desktop\FragPipe-jre-22.0\fragpipe\tools\diaTracer-1.1.5.jar diatracer.diaTracerMainClass --dFilePath D:\20240927_SW-KF\PLD_method\raw\20240927_SW-KF_S1_sup_Slot2-37_1_8056.d --workDir D:\20240927_SW-KF\PLD_method\output --threadNum 23 --writeInter 0 --deltaApexIM 0.01 --deltaApexRT 3 --massDefectFilter 0 --massDefectOffset 0.1 --ms1MS2Corr 0.3 --RFMax 500 diaTracer [Work dir: D:\20240927_SW-KF\PLD_method\output] C:\Users\dubia\OneDrive\Desktop\FragPipe-jre-22.0\fragpipe\jre\bin\java.exe -Xmx48G -Dlibs.bruker.dir=C:\Users\dubia\OneDrive\Desktop\FragPipe-jre-22.0\fragpipe\lib\..\tools\MSFragger-4.1\ext\bruker -cp C:\Users\dubia\OneDrive\Desktop\FragPipe-jre-22.0\fragpipe\tools\batmass-io-1.33.4.jar;C:\Users\dubia\OneDrive\Desktop\FragPipe-jre-22.0\fragpipe\tools\diaTracer-1.1.5.jar diatracer.diaTracerMainClass --dFilePath D:\20240927_SW-KF\PLD_method\raw\20240927_SW-KF_S1_total_Slot2-36_1_8055.d --workDir D:\20240927_SW-KF\PLD_method\output --threadNum 23 --writeInter 0 --deltaApexIM 0.01 --deltaApexRT 3 --massDefectFilter 0 --massDefectOffset 0.1 --ms1MS2Corr 0.3 --RFMax 500 diaTracer [Work dir: D:\20240927_SW-KF\PLD_method\output] C:\Users\dubia\OneDrive\Desktop\FragPipe-jre-22.0\fragpipe\jre\bin\java.exe -Xmx48G -Dlibs.bruker.dir=C:\Users\dubia\OneDrive\Desktop\FragPipe-jre-22.0\fragpipe\lib\..\tools\MSFragger-4.1\ext\bruker -cp C:\Users\dubia\OneDrive\Desktop\FragPipe-jre-22.0\fragpipe\tools\batmass-io-1.33.4.jar;C:\Users\dubia\OneDrive\Desktop\FragPipe-jre-22.0\fragpipe\tools\diaTracer-1.1.5.jar diatracer.diaTracerMainClass --dFilePath D:\20240927_SW-KF\PLD_method\raw\20240927_SW-KF_S2_PLD_Slot2-41_1_8063.d --workDir D:\20240927_SW-KF\PLD_method\output --threadNum 23 --writeInter 0 --deltaApexIM 0.01 --deltaApexRT 3 --massDefectFilter 0 --massDefectOffset 0.1 --ms1MS2Corr 0.3 --RFMax 500 diaTracer [Work dir: D:\20240927_SW-KF\PLD_method\output] C:\Users\dubia\OneDrive\Desktop\FragPipe-jre-22.0\fragpipe\jre\bin\java.exe -Xmx48G -Dlibs.bruker.dir=C:\Users\dubia\OneDrive\Desktop\FragPipe-jre-22.0\fragpipe\lib\..\tools\MSFragger-4.1\ext\bruker -cp C:\Users\dubia\OneDrive\Desktop\FragPipe-jre-22.0\fragpipe\tools\batmass-io-1.33.4.jar;C:\Users\dubia\OneDrive\Desktop\FragPipe-jre-22.0\fragpipe\tools\diaTracer-1.1.5.jar diatracer.diaTracerMainClass --dFilePath D:\20240927_SW-KF\PLD_method\raw\20240927_SW-KF_S2_sup_Slot2-40_1_8061.d --workDir D:\20240927_SW-KF\PLD_method\output --threadNum 23 --writeInter 0 --deltaApexIM 0.01 --deltaApexRT 3 --massDefectFilter 0 --massDefectOffset 0.1 --ms1MS2Corr 0.3 --RFMax 500 diaTracer [Work dir: D:\20240927_SW-KF\PLD_method\output] C:\Users\dubia\OneDrive\Desktop\FragPipe-jre-22.0\fragpipe\jre\bin\java.exe -Xmx48G -Dlibs.bruker.dir=C:\Users\dubia\OneDrive\Desktop\FragPipe-jre-22.0\fragpipe\lib\..\tools\MSFragger-4.1\ext\bruker -cp C:\Users\dubia\OneDrive\Desktop\FragPipe-jre-22.0\fragpipe\tools\batmass-io-1.33.4.jar;C:\Users\dubia\OneDrive\Desktop\FragPipe-jre-22.0\fragpipe\tools\diaTracer-1.1.5.jar diatracer.diaTracerMainClass --dFilePath D:\20240927_SW-KF\PLD_method\raw\20240927_SW-KF_S2_total_Slot2-39_1_8060.d --workDir D:\20240927_SW-KF\PLD_method\output --threadNum 23 --writeInter 0 --deltaApexIM 0.01 --deltaApexRT 3 --massDefectFilter 0 --massDefectOffset 0.1 --ms1MS2Corr 0.3 --RFMax 500 MSFragger [Work dir: D:\20240927_SW-KF\PLD_method\output] C:\Users\dubia\OneDrive\Desktop\FragPipe-jre-22.0\fragpipe\jre\bin\java.exe -jar -Dfile.encoding=UTF-8 -Xmx48G C:\Users\dubia\OneDrive\Desktop\FragPipe-jre-22.0\fragpipe\lib\..\tools\MSFragger-4.1\MSFragger-4.1.jar D:\20240927_SW-KF\PLD_method\output\fragger_dda.params D:\20240927_SW-KF\PLD_method\raw\20240927_SW-KF_S1_PLD_Slot2-38_1_8058_diatracer.mzML D:\20240927_SW-KF\PLD_method\raw\20240927_SW-KF_S1_sup_Slot2-37_1_8056_diatracer.mzML D:\20240927_SW-KF\PLD_method\raw\20240927_SW-KF_S1_total_Slot2-36_1_8055_diatracer.mzML D:\20240927_SW-KF\PLD_method\raw\20240927_SW-KF_S2_PLD_Slot2-41_1_8063_diatracer.mzML D:\20240927_SW-KF\PLD_method\raw\20240927_SW-KF_S2_sup_Slot2-40_1_8061_diatracer.mzML D:\20240927_SW-KF\PLD_method\raw\20240927_SW-KF_S2_total_Slot2-39_1_8060_diatracer.mzML MSFragger move pepxml C:\Users\dubia\OneDrive\Desktop\FragPipe-jre-22.0\fragpipe\jre\bin\java.exe -cp C:\Users\dubia\OneDrive\Desktop\FragPipe-jre-22.0\fragpipe\lib\fragpipe-22.0.jar;/C:/Users/dubia/OneDrive/Desktop/FragPipe-jre-22.0/fragpipe/lib/commons-io-2.15.1.jar com.github.chhh.utils.FileMove --no-err D:\20240927_SW-KF\PLD_method\raw\20240927_SW-KF_S1_PLD_Slot2-38_1_8058_diatracer.pepXML D:\20240927_SW-KF\PLD_method\output\20240927_SW-KF_S1_PLD_Slot2-38_1_8058_diatracer.pepXML MSFragger move pin C:\Users\dubia\OneDrive\Desktop\FragPipe-jre-22.0\fragpipe\jre\bin\java.exe -cp C:\Users\dubia\OneDrive\Desktop\FragPipe-jre-22.0\fragpipe\lib\fragpipe-22.0.jar;/C:/Users/dubia/OneDrive/Desktop/FragPipe-jre-22.0/fragpipe/lib/commons-io-2.15.1.jar com.github.chhh.utils.FileMove --no-err D:\20240927_SW-KF\PLD_method\raw\20240927_SW-KF_S1_PLD_Slot2-38_1_8058_diatracer.pin D:\20240927_SW-KF\PLD_method\output\20240927_SW-KF_S1_PLD_Slot2-38_1_8058_diatracer.pin MSFragger move pepxml C:\Users\dubia\OneDrive\Desktop\FragPipe-jre-22.0\fragpipe\jre\bin\java.exe -cp C:\Users\dubia\OneDrive\Desktop\FragPipe-jre-22.0\fragpipe\lib\fragpipe-22.0.jar;/C:/Users/dubia/OneDrive/Desktop/FragPipe-jre-22.0/fragpipe/lib/commons-io-2.15.1.jar com.github.chhh.utils.FileMove --no-err D:\20240927_SW-KF\PLD_method\raw\20240927_SW-KF_S1_sup_Slot2-37_1_8056_diatracer.pepXML D:\20240927_SW-KF\PLD_method\output\20240927_SW-KF_S1_sup_Slot2-37_1_8056_diatracer.pepXML MSFragger move pin C:\Users\dubia\OneDrive\Desktop\FragPipe-jre-22.0\fragpipe\jre\bin\java.exe -cp C:\Users\dubia\OneDrive\Desktop\FragPipe-jre-22.0\fragpipe\lib\fragpipe-22.0.jar;/C:/Users/dubia/OneDrive/Desktop/FragPipe-jre-22.0/fragpipe/lib/commons-io-2.15.1.jar com.github.chhh.utils.FileMove --no-err D:\20240927_SW-KF\PLD_method\raw\20240927_SW-KF_S1_sup_Slot2-37_1_8056_diatracer.pin D:\20240927_SW-KF\PLD_method\output\20240927_SW-KF_S1_sup_Slot2-37_1_8056_diatracer.pin MSFragger move pepxml C:\Users\dubia\OneDrive\Desktop\FragPipe-jre-22.0\fragpipe\jre\bin\java.exe -cp C:\Users\dubia\OneDrive\Desktop\FragPipe-jre-22.0\fragpipe\lib\fragpipe-22.0.jar;/C:/Users/dubia/OneDrive/Desktop/FragPipe-jre-22.0/fragpipe/lib/commons-io-2.15.1.jar com.github.chhh.utils.FileMove --no-err D:\20240927_SW-KF\PLD_method\raw\20240927_SW-KF_S1_total_Slot2-36_1_8055_diatracer.pepXML D:\20240927_SW-KF\PLD_method\output\20240927_SW-KF_S1_total_Slot2-36_1_8055_diatracer.pepXML MSFragger move pin C:\Users\dubia\OneDrive\Desktop\FragPipe-jre-22.0\fragpipe\jre\bin\java.exe -cp C:\Users\dubia\OneDrive\Desktop\FragPipe-jre-22.0\fragpipe\lib\fragpipe-22.0.jar;/C:/Users/dubia/OneDrive/Desktop/FragPipe-jre-22.0/fragpipe/lib/commons-io-2.15.1.jar com.github.chhh.utils.FileMove --no-err D:\20240927_SW-KF\PLD_method\raw\20240927_SW-KF_S1_total_Slot2-36_1_8055_diatracer.pin D:\20240927_SW-KF\PLD_method\output\20240927_SW-KF_S1_total_Slot2-36_1_8055_diatracer.pin MSFragger move pepxml C:\Users\dubia\OneDrive\Desktop\FragPipe-jre-22.0\fragpipe\jre\bin\java.exe -cp C:\Users\dubia\OneDrive\Desktop\FragPipe-jre-22.0\fragpipe\lib\fragpipe-22.0.jar;/C:/Users/dubia/OneDrive/Desktop/FragPipe-jre-22.0/fragpipe/lib/commons-io-2.15.1.jar com.github.chhh.utils.FileMove --no-err D:\20240927_SW-KF\PLD_method\raw\20240927_SW-KF_S2_PLD_Slot2-41_1_8063_diatracer.pepXML D:\20240927_SW-KF\PLD_method\output\20240927_SW-KF_S2_PLD_Slot2-41_1_8063_diatracer.pepXML MSFragger move pin C:\Users\dubia\OneDrive\Desktop\FragPipe-jre-22.0\fragpipe\jre\bin\java.exe -cp C:\Users\dubia\OneDrive\Desktop\FragPipe-jre-22.0\fragpipe\lib\fragpipe-22.0.jar;/C:/Users/dubia/OneDrive/Desktop/FragPipe-jre-22.0/fragpipe/lib/commons-io-2.15.1.jar com.github.chhh.utils.FileMove --no-err D:\20240927_SW-KF\PLD_method\raw\20240927_SW-KF_S2_PLD_Slot2-41_1_8063_diatracer.pin D:\20240927_SW-KF\PLD_method\output\20240927_SW-KF_S2_PLD_Slot2-41_1_8063_diatracer.pin MSFragger move pepxml C:\Users\dubia\OneDrive\Desktop\FragPipe-jre-22.0\fragpipe\jre\bin\java.exe -cp C:\Users\dubia\OneDrive\Desktop\FragPipe-jre-22.0\fragpipe\lib\fragpipe-22.0.jar;/C:/Users/dubia/OneDrive/Desktop/FragPipe-jre-22.0/fragpipe/lib/commons-io-2.15.1.jar com.github.chhh.utils.FileMove --no-err D:\20240927_SW-KF\PLD_method\raw\20240927_SW-KF_S2_sup_Slot2-40_1_8061_diatracer.pepXML D:\20240927_SW-KF\PLD_method\output\20240927_SW-KF_S2_sup_Slot2-40_1_8061_diatracer.pepXML MSFragger move pin C:\Users\dubia\OneDrive\Desktop\FragPipe-jre-22.0\fragpipe\jre\bin\java.exe -cp C:\Users\dubia\OneDrive\Desktop\FragPipe-jre-22.0\fragpipe\lib\fragpipe-22.0.jar;/C:/Users/dubia/OneDrive/Desktop/FragPipe-jre-22.0/fragpipe/lib/commons-io-2.15.1.jar com.github.chhh.utils.FileMove --no-err D:\20240927_SW-KF\PLD_method\raw\20240927_SW-KF_S2_sup_Slot2-40_1_8061_diatracer.pin D:\20240927_SW-KF\PLD_method\output\20240927_SW-KF_S2_sup_Slot2-40_1_8061_diatracer.pin MSFragger move pepxml C:\Users\dubia\OneDrive\Desktop\FragPipe-jre-22.0\fragpipe\jre\bin\java.exe -cp C:\Users\dubia\OneDrive\Desktop\FragPipe-jre-22.0\fragpipe\lib\fragpipe-22.0.jar;/C:/Users/dubia/OneDrive/Desktop/FragPipe-jre-22.0/fragpipe/lib/commons-io-2.15.1.jar com.github.chhh.utils.FileMove --no-err D:\20240927_SW-KF\PLD_method\raw\20240927_SW-KF_S2_total_Slot2-39_1_8060_diatracer.pepXML D:\20240927_SW-KF\PLD_method\output\20240927_SW-KF_S2_total_Slot2-39_1_8060_diatracer.pepXML MSFragger move pin C:\Users\dubia\OneDrive\Desktop\FragPipe-jre-22.0\fragpipe\jre\bin\java.exe -cp C:\Users\dubia\OneDrive\Desktop\FragPipe-jre-22.0\fragpipe\lib\fragpipe-22.0.jar;/C:/Users/dubia/OneDrive/Desktop/FragPipe-jre-22.0/fragpipe/lib/commons-io-2.15.1.jar com.github.chhh.utils.FileMove --no-err D:\20240927_SW-KF\PLD_method\raw\20240927_SW-KF_S2_total_Slot2-39_1_8060_diatracer.pin D:\20240927_SW-KF\PLD_method\output\20240927_SW-KF_S2_total_Slot2-39_1_8060_diatracer.pin Percolator [Work dir: D:\20240927_SW-KF\PLD_method\output] C:\Users\dubia\OneDrive\Desktop\FragPipe-jre-22.0\fragpipe\tools\percolator_3_6_5\windows\percolator.exe --only-psms --no-terminate --post-processing-tdc --num-threads 23 --results-psms 20240927_SW-KF_S1_total_Slot2-36_1_8055_diatracer_percolator_target_psms.tsv --decoy-results-psms 20240927_SW-KF_S1_total_Slot2-36_1_8055_diatracer_percolator_decoy_psms.tsv --protein-decoy-pattern rev_ 20240927_SW-KF_S1_total_Slot2-36_1_8055_diatracer.pin Percolator [Work dir: D:\20240927_SW-KF\PLD_method\output] C:\Users\dubia\OneDrive\Desktop\FragPipe-jre-22.0\fragpipe\tools\percolator_3_6_5\windows\percolator.exe --only-psms --no-terminate --post-processing-tdc --num-threads 23 --results-psms 20240927_SW-KF_S2_sup_Slot2-40_1_8061_diatracer_percolator_target_psms.tsv --decoy-results-psms 20240927_SW-KF_S2_sup_Slot2-40_1_8061_diatracer_percolator_decoy_psms.tsv --protein-decoy-pattern rev_ 20240927_SW-KF_S2_sup_Slot2-40_1_8061_diatracer.pin Percolator [Work dir: D:\20240927_SW-KF\PLD_method\output] C:\Users\dubia\OneDrive\Desktop\FragPipe-jre-22.0\fragpipe\tools\percolator_3_6_5\windows\percolator.exe --only-psms --no-terminate --post-processing-tdc --num-threads 23 --results-psms 20240927_SW-KF_S1_PLD_Slot2-38_1_8058_diatracer_percolator_target_psms.tsv --decoy-results-psms 20240927_SW-KF_S1_PLD_Slot2-38_1_8058_diatracer_percolator_decoy_psms.tsv --protein-decoy-pattern rev_ 20240927_SW-KF_S1_PLD_Slot2-38_1_8058_diatracer.pin Percolator [Work dir: D:\20240927_SW-KF\PLD_method\output] C:\Users\dubia\OneDrive\Desktop\FragPipe-jre-22.0\fragpipe\tools\percolator_3_6_5\windows\percolator.exe --only-psms --no-terminate --post-processing-tdc --num-threads 23 --results-psms 20240927_SW-KF_S1_sup_Slot2-37_1_8056_diatracer_percolator_target_psms.tsv --decoy-results-psms 20240927_SW-KF_S1_sup_Slot2-37_1_8056_diatracer_percolator_decoy_psms.tsv --protein-decoy-pattern rev_ 20240927_SW-KF_S1_sup_Slot2-37_1_8056_diatracer.pin Percolator [Work dir: D:\20240927_SW-KF\PLD_method\output] C:\Users\dubia\OneDrive\Desktop\FragPipe-jre-22.0\fragpipe\tools\percolator_3_6_5\windows\percolator.exe --only-psms --no-terminate --post-processing-tdc --num-threads 23 --results-psms 20240927_SW-KF_S2_total_Slot2-39_1_8060_diatracer_percolator_target_psms.tsv --decoy-results-psms 20240927_SW-KF_S2_total_Slot2-39_1_8060_diatracer_percolator_decoy_psms.tsv --protein-decoy-pattern rev_ 20240927_SW-KF_S2_total_Slot2-39_1_8060_diatracer.pin Percolator [Work dir: D:\20240927_SW-KF\PLD_method\output] C:\Users\dubia\OneDrive\Desktop\FragPipe-jre-22.0\fragpipe\tools\percolator_3_6_5\windows\percolator.exe --only-psms --no-terminate --post-processing-tdc --num-threads 23 --results-psms 20240927_SW-KF_S2_PLD_Slot2-41_1_8063_diatracer_percolator_target_psms.tsv --decoy-results-psms 20240927_SW-KF_S2_PLD_Slot2-41_1_8063_diatracer_percolator_decoy_psms.tsv --protein-decoy-pattern rev_ 20240927_SW-KF_S2_PLD_Slot2-41_1_8063_diatracer.pin Percolator: Convert to pepxml [Work dir: D:\20240927_SW-KF\PLD_method\output] C:\Users\dubia\OneDrive\Desktop\FragPipe-jre-22.0\fragpipe\jre\bin\java.exe -cp C:\Users\dubia\OneDrive\Desktop\FragPipe-jre-22.0\fragpipe\lib/* com.dmtavt.fragpipe.tools.percolator.PercolatorOutputToPepXML 20240927_SW-KF_S1_total_Slot2-36_1_8055_diatracer.pin 20240927_SW-KF_S1_total_Slot2-36_1_8055_diatracer 20240927_SW-KF_S1_total_Slot2-36_1_8055_diatracer_percolator_target_psms.tsv 20240927_SW-KF_S1_total_Slot2-36_1_8055_diatracer_percolator_decoy_psms.tsv interact-20240927_SW-KF_S1_total_Slot2-36_1_8055_diatracer DDA 0.5 D:\20240927_SW-KF\PLD_method\raw\20240927_SW-KF_S1_total_Slot2-36_1_8055_diatracer_calibrated.mzML Percolator: Delete temp C:\Users\dubia\OneDrive\Desktop\FragPipe-jre-22.0\fragpipe\jre\bin\java.exe -cp C:\Users\dubia\OneDrive\Desktop\FragPipe-jre-22.0\fragpipe\lib\fragpipe-22.0.jar com.github.chhh.utils.FileDelete D:\20240927_SW-KF\PLD_method\output\20240927_SW-KF_S1_total_Slot2-36_1_8055_diatracer_percolator_target_psms.tsv Percolator: Delete temp C:\Users\dubia\OneDrive\Desktop\FragPipe-jre-22.0\fragpipe\jre\bin\java.exe -cp C:\Users\dubia\OneDrive\Desktop\FragPipe-jre-22.0\fragpipe\lib\fragpipe-22.0.jar com.github.chhh.utils.FileDelete D:\20240927_SW-KF\PLD_method\output\20240927_SW-KF_S1_total_Slot2-36_1_8055_diatracer_percolator_decoy_psms.tsv Percolator: Convert to pepxml [Work dir: D:\20240927_SW-KF\PLD_method\output] C:\Users\dubia\OneDrive\Desktop\FragPipe-jre-22.0\fragpipe\jre\bin\java.exe -cp C:\Users\dubia\OneDrive\Desktop\FragPipe-jre-22.0\fragpipe\lib/* com.dmtavt.fragpipe.tools.percolator.PercolatorOutputToPepXML 20240927_SW-KF_S2_sup_Slot2-40_1_8061_diatracer.pin 20240927_SW-KF_S2_sup_Slot2-40_1_8061_diatracer 20240927_SW-KF_S2_sup_Slot2-40_1_8061_diatracer_percolator_target_psms.tsv 20240927_SW-KF_S2_sup_Slot2-40_1_8061_diatracer_percolator_decoy_psms.tsv interact-20240927_SW-KF_S2_sup_Slot2-40_1_8061_diatracer DDA 0.5 D:\20240927_SW-KF\PLD_method\raw\20240927_SW-KF_S2_sup_Slot2-40_1_8061_diatracer_calibrated.mzML Percolator: Delete temp C:\Users\dubia\OneDrive\Desktop\FragPipe-jre-22.0\fragpipe\jre\bin\java.exe -cp C:\Users\dubia\OneDrive\Desktop\FragPipe-jre-22.0\fragpipe\lib\fragpipe-22.0.jar com.github.chhh.utils.FileDelete D:\20240927_SW-KF\PLD_method\output\20240927_SW-KF_S2_sup_Slot2-40_1_8061_diatracer_percolator_target_psms.tsv Percolator: Delete temp C:\Users\dubia\OneDrive\Desktop\FragPipe-jre-22.0\fragpipe\jre\bin\java.exe -cp C:\Users\dubia\OneDrive\Desktop\FragPipe-jre-22.0\fragpipe\lib\fragpipe-22.0.jar com.github.chhh.utils.FileDelete D:\20240927_SW-KF\PLD_method\output\20240927_SW-KF_S2_sup_Slot2-40_1_8061_diatracer_percolator_decoy_psms.tsv Percolator: Convert to pepxml [Work dir: D:\20240927_SW-KF\PLD_method\output] C:\Users\dubia\OneDrive\Desktop\FragPipe-jre-22.0\fragpipe\jre\bin\java.exe -cp C:\Users\dubia\OneDrive\Desktop\FragPipe-jre-22.0\fragpipe\lib/* com.dmtavt.fragpipe.tools.percolator.PercolatorOutputToPepXML 20240927_SW-KF_S1_PLD_Slot2-38_1_8058_diatracer.pin 20240927_SW-KF_S1_PLD_Slot2-38_1_8058_diatracer 20240927_SW-KF_S1_PLD_Slot2-38_1_8058_diatracer_percolator_target_psms.tsv 20240927_SW-KF_S1_PLD_Slot2-38_1_8058_diatracer_percolator_decoy_psms.tsv interact-20240927_SW-KF_S1_PLD_Slot2-38_1_8058_diatracer DDA 0.5 D:\20240927_SW-KF\PLD_method\raw\20240927_SW-KF_S1_PLD_Slot2-38_1_8058_diatracer_calibrated.mzML Percolator: Delete temp C:\Users\dubia\OneDrive\Desktop\FragPipe-jre-22.0\fragpipe\jre\bin\java.exe -cp C:\Users\dubia\OneDrive\Desktop\FragPipe-jre-22.0\fragpipe\lib\fragpipe-22.0.jar com.github.chhh.utils.FileDelete D:\20240927_SW-KF\PLD_method\output\20240927_SW-KF_S1_PLD_Slot2-38_1_8058_diatracer_percolator_target_psms.tsv Percolator: Delete temp C:\Users\dubia\OneDrive\Desktop\FragPipe-jre-22.0\fragpipe\jre\bin\java.exe -cp C:\Users\dubia\OneDrive\Desktop\FragPipe-jre-22.0\fragpipe\lib\fragpipe-22.0.jar com.github.chhh.utils.FileDelete D:\20240927_SW-KF\PLD_method\output\20240927_SW-KF_S1_PLD_Slot2-38_1_8058_diatracer_percolator_decoy_psms.tsv Percolator: Convert to pepxml [Work dir: D:\20240927_SW-KF\PLD_method\output] C:\Users\dubia\OneDrive\Desktop\FragPipe-jre-22.0\fragpipe\jre\bin\java.exe -cp C:\Users\dubia\OneDrive\Desktop\FragPipe-jre-22.0\fragpipe\lib/* com.dmtavt.fragpipe.tools.percolator.PercolatorOutputToPepXML 20240927_SW-KF_S1_sup_Slot2-37_1_8056_diatracer.pin 20240927_SW-KF_S1_sup_Slot2-37_1_8056_diatracer 20240927_SW-KF_S1_sup_Slot2-37_1_8056_diatracer_percolator_target_psms.tsv 20240927_SW-KF_S1_sup_Slot2-37_1_8056_diatracer_percolator_decoy_psms.tsv interact-20240927_SW-KF_S1_sup_Slot2-37_1_8056_diatracer DDA 0.5 D:\20240927_SW-KF\PLD_method\raw\20240927_SW-KF_S1_sup_Slot2-37_1_8056_diatracer_calibrated.mzML Percolator: Delete temp C:\Users\dubia\OneDrive\Desktop\FragPipe-jre-22.0\fragpipe\jre\bin\java.exe -cp C:\Users\dubia\OneDrive\Desktop\FragPipe-jre-22.0\fragpipe\lib\fragpipe-22.0.jar com.github.chhh.utils.FileDelete D:\20240927_SW-KF\PLD_method\output\20240927_SW-KF_S1_sup_Slot2-37_1_8056_diatracer_percolator_target_psms.tsv Percolator: Delete temp C:\Users\dubia\OneDrive\Desktop\FragPipe-jre-22.0\fragpipe\jre\bin\java.exe -cp C:\Users\dubia\OneDrive\Desktop\FragPipe-jre-22.0\fragpipe\lib\fragpipe-22.0.jar com.github.chhh.utils.FileDelete D:\20240927_SW-KF\PLD_method\output\20240927_SW-KF_S1_sup_Slot2-37_1_8056_diatracer_percolator_decoy_psms.tsv Percolator: Convert to pepxml [Work dir: D:\20240927_SW-KF\PLD_method\output] C:\Users\dubia\OneDrive\Desktop\FragPipe-jre-22.0\fragpipe\jre\bin\java.exe -cp C:\Users\dubia\OneDrive\Desktop\FragPipe-jre-22.0\fragpipe\lib/* com.dmtavt.fragpipe.tools.percolator.PercolatorOutputToPepXML 20240927_SW-KF_S2_total_Slot2-39_1_8060_diatracer.pin 20240927_SW-KF_S2_total_Slot2-39_1_8060_diatracer 20240927_SW-KF_S2_total_Slot2-39_1_8060_diatracer_percolator_target_psms.tsv 20240927_SW-KF_S2_total_Slot2-39_1_8060_diatracer_percolator_decoy_psms.tsv interact-20240927_SW-KF_S2_total_Slot2-39_1_8060_diatracer DDA 0.5 D:\20240927_SW-KF\PLD_method\raw\20240927_SW-KF_S2_total_Slot2-39_1_8060_diatracer_calibrated.mzML Percolator: Delete temp C:\Users\dubia\OneDrive\Desktop\FragPipe-jre-22.0\fragpipe\jre\bin\java.exe -cp C:\Users\dubia\OneDrive\Desktop\FragPipe-jre-22.0\fragpipe\lib\fragpipe-22.0.jar com.github.chhh.utils.FileDelete D:\20240927_SW-KF\PLD_method\output\20240927_SW-KF_S2_total_Slot2-39_1_8060_diatracer_percolator_target_psms.tsv Percolator: Delete temp C:\Users\dubia\OneDrive\Desktop\FragPipe-jre-22.0\fragpipe\jre\bin\java.exe -cp C:\Users\dubia\OneDrive\Desktop\FragPipe-jre-22.0\fragpipe\lib\fragpipe-22.0.jar com.github.chhh.utils.FileDelete D:\20240927_SW-KF\PLD_method\output\20240927_SW-KF_S2_total_Slot2-39_1_8060_diatracer_percolator_decoy_psms.tsv Percolator: Convert to pepxml [Work dir: D:\20240927_SW-KF\PLD_method\output] C:\Users\dubia\OneDrive\Desktop\FragPipe-jre-22.0\fragpipe\jre\bin\java.exe -cp C:\Users\dubia\OneDrive\Desktop\FragPipe-jre-22.0\fragpipe\lib/* com.dmtavt.fragpipe.tools.percolator.PercolatorOutputToPepXML 20240927_SW-KF_S2_PLD_Slot2-41_1_8063_diatracer.pin 20240927_SW-KF_S2_PLD_Slot2-41_1_8063_diatracer 20240927_SW-KF_S2_PLD_Slot2-41_1_8063_diatracer_percolator_target_psms.tsv 20240927_SW-KF_S2_PLD_Slot2-41_1_8063_diatracer_percolator_decoy_psms.tsv interact-20240927_SW-KF_S2_PLD_Slot2-41_1_8063_diatracer DDA 0.5 D:\20240927_SW-KF\PLD_method\raw\20240927_SW-KF_S2_PLD_Slot2-41_1_8063_diatracer_calibrated.mzML Percolator: Delete temp C:\Users\dubia\OneDrive\Desktop\FragPipe-jre-22.0\fragpipe\jre\bin\java.exe -cp C:\Users\dubia\OneDrive\Desktop\FragPipe-jre-22.0\fragpipe\lib\fragpipe-22.0.jar com.github.chhh.utils.FileDelete D:\20240927_SW-KF\PLD_method\output\20240927_SW-KF_S2_PLD_Slot2-41_1_8063_diatracer_percolator_target_psms.tsv Percolator: Delete temp C:\Users\dubia\OneDrive\Desktop\FragPipe-jre-22.0\fragpipe\jre\bin\java.exe -cp C:\Users\dubia\OneDrive\Desktop\FragPipe-jre-22.0\fragpipe\lib\fragpipe-22.0.jar com.github.chhh.utils.FileDelete D:\20240927_SW-KF\PLD_method\output\20240927_SW-KF_S2_PLD_Slot2-41_1_8063_diatracer_percolator_decoy_psms.tsv PTMProphet [Work dir: D:\20240927_SW-KF\PLD_method\output] C:\Users\dubia\OneDrive\Desktop\FragPipe-jre-22.0\fragpipe\tools\PTMProphet\PTMProphetParser.exe KEEPOLD STATIC EM=1 NIONS=b M:15.9949,n:42.0106,c:43.0422,DE:43.0422,c:87.03203,DE:87.03203 MINPROB=0.5 MAXTHREADS=1 interact-20240927_SW-KF_S2_sup_Slot2-40_1_8061_diatracer.pep.xml interact-20240927_SW-KF_S2_sup_Slot2-40_1_8061_diatracer.mod.pep.xml PTMProphet [Work dir: D:\20240927_SW-KF\PLD_method\output] C:\Users\dubia\OneDrive\Desktop\FragPipe-jre-22.0\fragpipe\tools\PTMProphet\PTMProphetParser.exe KEEPOLD STATIC EM=1 NIONS=b M:15.9949,n:42.0106,c:43.0422,DE:43.0422,c:87.03203,DE:87.03203 MINPROB=0.5 MAXTHREADS=1 interact-20240927_SW-KF_S2_total_Slot2-39_1_8060_diatracer.pep.xml interact-20240927_SW-KF_S2_total_Slot2-39_1_8060_diatracer.mod.pep.xml PTMProphet [Work dir: D:\20240927_SW-KF\PLD_method\output] C:\Users\dubia\OneDrive\Desktop\FragPipe-jre-22.0\fragpipe\tools\PTMProphet\PTMProphetParser.exe KEEPOLD STATIC EM=1 NIONS=b M:15.9949,n:42.0106,c:43.0422,DE:43.0422,c:87.03203,DE:87.03203 MINPROB=0.5 MAXTHREADS=1 interact-20240927_SW-KF_S2_PLD_Slot2-41_1_8063_diatracer.pep.xml interact-20240927_SW-KF_S2_PLD_Slot2-41_1_8063_diatracer.mod.pep.xml PTMProphet [Work dir: D:\20240927_SW-KF\PLD_method\output] C:\Users\dubia\OneDrive\Desktop\FragPipe-jre-22.0\fragpipe\tools\PTMProphet\PTMProphetParser.exe KEEPOLD STATIC EM=1 NIONS=b M:15.9949,n:42.0106,c:43.0422,DE:43.0422,c:87.03203,DE:87.03203 MINPROB=0.5 MAXTHREADS=1 interact-20240927_SW-KF_S1_total_Slot2-36_1_8055_diatracer.pep.xml interact-20240927_SW-KF_S1_total_Slot2-36_1_8055_diatracer.mod.pep.xml PTMProphet [Work dir: D:\20240927_SW-KF\PLD_method\output] C:\Users\dubia\OneDrive\Desktop\FragPipe-jre-22.0\fragpipe\tools\PTMProphet\PTMProphetParser.exe KEEPOLD STATIC EM=1 NIONS=b M:15.9949,n:42.0106,c:43.0422,DE:43.0422,c:87.03203,DE:87.03203 MINPROB=0.5 MAXTHREADS=1 interact-20240927_SW-KF_S1_PLD_Slot2-38_1_8058_diatracer.pep.xml interact-20240927_SW-KF_S1_PLD_Slot2-38_1_8058_diatracer.mod.pep.xml PTMProphet [Work dir: D:\20240927_SW-KF\PLD_method\output] C:\Users\dubia\OneDrive\Desktop\FragPipe-jre-22.0\fragpipe\tools\PTMProphet\PTMProphetParser.exe KEEPOLD STATIC EM=1 NIONS=b M:15.9949,n:42.0106,c:43.0422,DE:43.0422,c:87.03203,DE:87.03203 MINPROB=0.5 MAXTHREADS=1 interact-20240927_SW-KF_S1_sup_Slot2-37_1_8056_diatracer.pep.xml interact-20240927_SW-KF_S1_sup_Slot2-37_1_8056_diatracer.mod.pep.xml ProteinProphet [Work dir: D:\20240927_SW-KF\PLD_method\output] C:\Users\dubia\OneDrive\Desktop\FragPipe-jre-22.0\fragpipe\tools\Philosopher\philosopher-v5.1.1.exe proteinprophet --maxppmdiff 2000000 --output combined D:\20240927_SW-KF\PLD_method\output\filelist_proteinprophet.txt PhilosopherDbAnnotate [Work dir: D:\20240927_SW-KF\PLD_method\output] C:\Users\dubia\OneDrive\Desktop\FragPipe-jre-22.0\fragpipe\tools\Philosopher\philosopher-v5.1.1.exe database --annotate D:\20240927_SW-KF\sequence\2024-10-03-decoys-contam-UP000005640.fas --prefix rev_ PhilosopherFilter [Work dir: D:\20240927_SW-KF\PLD_method\output] C:\Users\dubia\OneDrive\Desktop\FragPipe-jre-22.0\fragpipe\tools\Philosopher\philosopher-v5.1.1.exe filter --picked --prot 0.01 --tag rev_ --pepxml D:\20240927_SW-KF\PLD_method\output --protxml D:\20240927_SW-KF\PLD_method\output\combined.prot.xml --razor PhilosopherReport [Work dir: D:\20240927_SW-KF\PLD_method\output] C:\Users\dubia\OneDrive\Desktop\FragPipe-jre-22.0\fragpipe\tools\Philosopher\philosopher-v5.1.1.exe report --removecontam WorkspaceClean [Work dir: D:\20240927_SW-KF\PLD_method\output] C:\Users\dubia\OneDrive\Desktop\FragPipe-jre-22.0\fragpipe\tools\Philosopher\philosopher-v5.1.1.exe workspace --clean --nocheck SpecLibGen [Work dir: D:\20240927_SW-KF\PLD_method\output] C:\Users\dubia\anaconda3\python -u C:\Users\dubia\OneDrive\Desktop\FragPipe-jre-22.0\fragpipe\tools\speclib\gen_con_spec_lib.py D:\20240927_SW-KF\sequence\2024-10-03-decoys-contam-UP000005640.fas D:\20240927_SW-KF\PLD_method\output unused D:\20240927_SW-KF\PLD_method\output True unused use_easypqp noiRT;noIM 23 "--unimod C:/Users/dubia/OneDrive/Desktop/FragPipe-jre-22.0/fragpipe/tools/unimod_old.xml --max_delta_unimod 0.02 --max_delta_ppm 15.0 --fragment_types [\'b\',\'y\',]" "--rt_lowess_fraction 0.0" delete_intermediate_files D:\20240927_SW-KF\PLD_method\output\filelist_speclibgen.txt DIA-NN [Work dir: D:\20240927_SW-KF\PLD_method\output] C:\Users\dubia\OneDrive\Desktop\FragPipe-jre-22.0\fragpipe\tools\diann\1.8.2_beta_8\win\DiaNN.exe --lib library.tsv --threads 23 --verbose 1 --out diann-output\report.tsv --qvalue 0.01 --matrices --no-prot-inf --smart-profiling --no-quant-files --peak-center --no-ifs-removal --report-lib-info --cfg D:\20240927_SW-KF\PLD_method\output\filelist_diann.txt DIA-NN [Work dir: D:\20240927_SW-KF\PLD_method\output] C:\Users\dubia\OneDrive\Desktop\FragPipe-jre-22.0\fragpipe\tools\diann\1.8.2_beta_8\win\dia-nn-plotter.exe diann-output\report.stats.tsv diann-output\report.tsv diann-output\report.pdf DIA-NN: Propagate information [Work dir: D:\20240927_SW-KF\PLD_method\output\diann-output] C:\Users\dubia\OneDrive\Desktop\FragPipe-jre-22.0\fragpipe\jre\bin\java.exe -cp C:\Users\dubia\OneDrive\Desktop\FragPipe-jre-22.0\fragpipe\tools\batmass-io-1.33.4.jar;C:\Users\dubia\OneDrive\Desktop\FragPipe-jre-22.0\fragpipe\lib\fragpipe-22.0.jar;C:\Users\dubia\OneDrive\Desktop\FragPipe-jre-22.0\fragpipe\lib\fragpipe-22.0.jar com.dmtavt.fragpipe.tools.diann.Propagation D:\20240927_SW-KF\PLD_method\output DIA-NN: Convert DIA-NN output to MSstats.csv [Work dir: D:\20240927_SW-KF\PLD_method\output\diann-output] C:\Users\dubia\OneDrive\Desktop\FragPipe-jre-22.0\fragpipe\jre\bin\java.exe -cp C:\Users\dubia\OneDrive\Desktop\FragPipe-jre-22.0\fragpipe\lib\commons-io-2.15.1.jar;C:\Users\dubia\OneDrive\Desktop\FragPipe-jre-22.0\fragpipe\lib\fragpipe-22.0.jar;C:\Users\dubia\OneDrive\Desktop\FragPipe-jre-22.0\fragpipe\lib\fragpipe-22.0.jar com.dmtavt.fragpipe.tools.diann.DiannToMsstats report.tsv ./ D:\20240927_SW-KF\PLD_method\output\psm.tsv 0.01 1 0.01 0.01 D:\20240927_SW-KF\PLD_method\output\fragpipe-files.fp-manifest ~~~~~~~~~~~~~~~~~~~~~~ Execution order: Cmd: [START], Work dir: [D:\20240927_SW-KF\PLD_method\output] Cmd: [CheckCentroid], Work dir: [D:\20240927_SW-KF\PLD_method\output] Cmd: [WorkspaceCleanInit], Work dir: [D:\20240927_SW-KF\PLD_method\output] Cmd: [diaTracer], Work dir: [D:\20240927_SW-KF\PLD_method\output] Cmd: [MSFragger], Work dir: [D:\20240927_SW-KF\PLD_method\output] Cmd: [Percolator], Work dir: [D:\20240927_SW-KF\PLD_method\output] Cmd: [PTMProphet], Work dir: [D:\20240927_SW-KF\PLD_method\output] Cmd: [ProteinProphet], Work dir: [D:\20240927_SW-KF\PLD_method\output] Cmd: [PhilosopherDbAnnotate], Work dir: [D:\20240927_SW-KF\PLD_method\output] Cmd: [PhilosopherFilter], Work dir: [D:\20240927_SW-KF\PLD_method\output] Cmd: [PhilosopherReport], Work dir: [D:\20240927_SW-KF\PLD_method\output] Cmd: [WorkspaceClean], Work dir: [D:\20240927_SW-KF\PLD_method\output] Cmd: [SpecLibGen], Work dir: [D:\20240927_SW-KF\PLD_method\output] Cmd: [DIA-NN], Work dir: [D:\20240927_SW-KF\PLD_method\output] ~~~~~~~~~~~~~~~~~~~~~~ ~~~~~~Sample of D:\20240927_SW-KF\sequence\2024-10-03-decoys-contam-UP000005640.fas~~~~~~~ >contam_sp|O77727|K1C15_SHEEP Keratin, type I cytoskeletal 15 OS=Ovis aries OX=9940 GN=KRT15 PE=2 SV=1 >rev_sp|Q14699|RFTN1_HUMAN Raftlin OS=Homo sapiens OX=9606 GN=RFTN1 PE=1 SV=4 >rev_sp|Q9BX70|BTBD2_HUMAN BTB/POZ domain-containing protein 2 OS=Homo sapiens OX=9606 GN=BTBD2 PE=1 SV=1 >rev_tr|A0A0J9YY89|A0A0J9YY89_HUMAN T cell receptor beta variable 6-6 (Fragment) OS=Homo sapiens OX=9606 GN=TRBV6-6 PE=4 SV=3 >rev_tr|A0A7I2V3H1|A0A7I2V3H1_HUMAN BAG cochaperone 6 OS=Homo sapiens OX=9606 GN=BAG6 PE=1 SV=1 >rev_tr|A0A9L9PY84|A0A9L9PY84_HUMAN Rubicon autophagy regulator OS=Homo sapiens OX=9606 GN=RUBCN PE=1 SV=1 >rev_tr|D6RBA5|D6RBA5_HUMAN Complexin-2 (Fragment) OS=Homo sapiens OX=9606 GN=CPLX2 PE=1 SV=1 >rev_tr|F5H5J8|F5H5J8_HUMAN Caprin family member 2 OS=Homo sapiens OX=9606 GN=CAPRIN2 PE=1 SV=2 >rev_tr|H0YIL9|H0YIL9_HUMAN DEAD-box helicase 23 (Fragment) OS=Homo sapiens OX=9606 GN=DDX23 PE=1 SV=1 >rev_tr|J3QLK3|J3QLK3_HUMAN Testis expressed 14, intercellular bridge forming factor OS=Homo sapiens OX=9606 GN=TEX14 PE=1 SV=1 >rev_tr|X6RIU2|X6RIU2_HUMAN Cilia and flagella associated protein 221 (Fragment) OS=Homo sapiens OX=9606 GN=CFAP221 PE=1 SV=1 >sp|Q14954|KI2S1_HUMAN Killer cell immunoglobulin-like receptor 2DS1 OS=Homo sapiens OX=9606 GN=KIR2DS1 PE=1 SV=2 >sp|Q9BXM7|PINK1_HUMAN Serine/threonine-protein kinase PINK1, mitochondrial OS=Homo sapiens OX=9606 GN=PINK1 PE=1 SV=1 >tr|A0A0R4J2E0|A0A0R4J2E0_HUMAN Potassium sodium-activated channel subfamily T member 1 OS=Homo sapiens OX=9606 GN=KCNT1 PE=1 SV=1 >tr|A0A7I2V3N0|A0A7I2V3N0_HUMAN Exportin 1 OS=Homo sapiens OX=9606 GN=XPO1 PE=1 SV=1 >tr|A0A9Y1QPT7|A0A9Y1QPT7_HUMAN Breast cancer type 1 susceptibility protein OS=Homo sapiens OX=9606 GN=BRCA1 PE=1 SV=1 >tr|D6RBG5|D6RBG5_HUMAN non-specific serine/threonine protein kinase OS=Homo sapiens OX=9606 GN=NEK1 PE=1 SV=1 >tr|F5H5X9|F5H5X9_HUMAN Cadherin 7 OS=Homo sapiens OX=9606 GN=CDH7 PE=1 SV=1 >tr|H0YIV5|H0YIV5_HUMAN LETM1 domain containing 1 (Fragment) OS=Homo sapiens OX=9606 GN=LETMD1 PE=1 SV=1 >tr|J3QLR2|J3QLR2_HUMAN Septin-4 (Fragment) OS=Homo sapiens OX=9606 GN=SEPTIN4 PE=1 SV=1 >tr|X6RM24|X6RM24_HUMAN Enolase superfamily member 1 (Fragment) OS=Homo sapiens OX=9606 GN=ENOSF1 PE=1 SV=1 ~~~~~~~~~~~~~~~~~~~~~~ ~~~~~~~~~ fragpipe.config ~~~~~~~~~ # FragPipe v22.0ui state cache # Please edit the following path to point to the correct location. # In Windows, please replace single '\' with '\\' database.db-path=D\:\\20240927_SW-KF\\sequence\\2024-10-03-decoys-contam-UP000005640.fas crystalc.run-crystalc=false database.decoy-tag=rev_ diann.fragpipe.cmd-opts= diann.generate-msstats=true diann.heavy= diann.library= diann.light= diann.medium= diann.q-value=0.01 diann.quantification-strategy=3 diann.quantification-strategy-2=QuantUMS (high accuracy) diann.run-dia-nn=true diann.run-dia-plex=false diann.run-specific-protein-q-value=false diann.unrelated-runs=false diann.use-predicted-spectra=false diatracer.corr-threshold=0.3 diatracer.delta-apex-im=0.01 diatracer.delta-apex-rt=3 diatracer.mass-defect-filter=false diatracer.mass-defect-offset=0.1 diatracer.rf-max=500 diatracer.run-diatracer=true diatracer.write-intermediate-files=false diaumpire.AdjustFragIntensity=true diaumpire.BoostComplementaryIon=false diaumpire.CorrThreshold=0 diaumpire.DeltaApex=0.2 diaumpire.ExportPrecursorPeak=false diaumpire.Q1=true diaumpire.Q2=true diaumpire.Q3=true diaumpire.RFmax=500 diaumpire.RPmax=25 diaumpire.RTOverlap=0.3 diaumpire.SE.EstimateBG=false diaumpire.SE.IsoPattern=0.3 diaumpire.SE.MS1PPM=10 diaumpire.SE.MS2PPM=20 diaumpire.SE.MS2SN=1.1 diaumpire.SE.MassDefectFilter=true diaumpire.SE.MassDefectOffset=0.1 diaumpire.SE.NoMissedScan=1 diaumpire.SE.SN=1.1 diaumpire.run-diaumpire=false fpop.fpop-tmt=false fpop.label_control= fpop.label_fpop= fpop.region_size=1 fpop.run-fpop=false fpop.subtract-control=false fragpipe-config.bin-diann=C\:\\Users\\dubia\\OneDrive\\Desktop\\FragPipe-jre-22.0\\fragpipe\\tools\\diann\\1.8.2_beta_8\\win\\DiaNN.exe fragpipe-config.bin-ionquant=C\:\\Users\\dubia\\OneDrive\\Desktop\\FragPipe-jre-21.1\\fragpipe\\tools\\IonQuant-1.10.27.jar fragpipe-config.bin-msfragger=C\:\\Users\\dubia\\OneDrive\\Desktop\\FragPipe-jre-21.1\\fragpipe\\tools\\MSFragger-4.1\\MSFragger-4.1.jar fragpipe-config.bin-philosopher=C\:\\Users\\dubia\\OneDrive\\Desktop\\FragPipe-jre-21.1\\fragpipe\\tools\\philosopher_v5.1.0_windows_amd64\\philosopher.exe fragpipe-config.bin-python=C\:\\Users\\dubia\\anaconda3\\python fragpipe-config.tools-folder=C\:\\Users\\dubia\\OneDrive\\Desktop\\FragPipe-jre-22.0\\fragpipe\\lib\\..\\tools freequant.mz-tol=10 freequant.rt-tol=0.4 freequant.run-freequant=false ionquant.excludemods= ionquant.heavy= ionquant.imtol=0.05 ionquant.ionfdr=0.01 ionquant.light= ionquant.locprob=0.75 ionquant.maxlfq=1 ionquant.mbr=1 ionquant.mbrimtol=0.05 ionquant.mbrmincorr=0 ionquant.mbrrttol=1 ionquant.mbrtoprun=10 ionquant.medium= ionquant.minfreq=0 ionquant.minions=1 ionquant.minisotopes=2 ionquant.minscans=3 ionquant.mztol=10 ionquant.normalization=1 ionquant.peptidefdr=1 ionquant.proteinfdr=1 ionquant.requantify=1 ionquant.rttol=0.4 ionquant.run-ionquant=true ionquant.tp=0 ionquant.uniqueness=0 ionquant.use-labeling=false ionquant.use-lfq=true ionquant.writeindex=0 msbooster.find-best-rt-model=false msbooster.find-best-spectra-model=false msbooster.koina-url= msbooster.predict-rt=true msbooster.predict-spectra=true msbooster.rt-model=DIA-NN msbooster.run-msbooster=false msbooster.spectra-model=DIA-NN msbooster.use-correlated-features=false msfragger.Y_type_masses= msfragger.activation_types=all msfragger.add_topN_complementary=0 msfragger.allowed_missed_cleavage_1=2 msfragger.allowed_missed_cleavage_2=2 msfragger.analyzer_types=all msfragger.calibrate_mass=2 msfragger.check_spectral_files=false msfragger.clip_nTerm_M=true msfragger.deisotope=1 msfragger.delta_mass_exclude_ranges=(-1.5,3.5) msfragger.deneutralloss=1 msfragger.diagnostic_fragments= msfragger.diagnostic_intensity_filter=0 msfragger.digest_max_length=50 msfragger.digest_min_length=7 msfragger.fragment_ion_series=b,y msfragger.fragment_mass_tolerance=20 msfragger.fragment_mass_units=1 msfragger.group_variable=0 msfragger.intensity_transform=0 msfragger.ion_series_definitions= msfragger.isotope_error=0/1/2 msfragger.labile_search_mode=off msfragger.localize_delta_mass=false msfragger.mass_diff_to_variable_mod=0 msfragger.mass_offsets=0 msfragger.mass_offsets_detailed= msfragger.max_fragment_charge=2 msfragger.max_variable_mods_combinations=10000 msfragger.max_variable_mods_per_peptide=4 msfragger.min_fragments_modelling=2 msfragger.min_matched_fragments=4 msfragger.min_sequence_matches=2 msfragger.minimum_peaks=15 msfragger.minimum_ratio=0.00 msfragger.misc.fragger.clear-mz-hi=0 msfragger.misc.fragger.clear-mz-lo=0 msfragger.misc.fragger.digest-mass-hi=5000 msfragger.misc.fragger.digest-mass-lo=500 msfragger.misc.fragger.enzyme-dropdown-1=stricttrypsin msfragger.misc.fragger.enzyme-dropdown-2=null msfragger.misc.fragger.precursor-charge-hi=4 msfragger.misc.fragger.precursor-charge-lo=1 msfragger.misc.fragger.remove-precursor-range-hi=1.5 msfragger.misc.fragger.remove-precursor-range-lo=-1.5 msfragger.misc.slice-db=1 msfragger.num_enzyme_termini=2 msfragger.output_format=pepXML_pin msfragger.output_max_expect=50 msfragger.output_report_topN=1 msfragger.output_report_topN_dda_plus=5 msfragger.output_report_topN_dia1=5 msfragger.output_report_topN_dia2=3 msfragger.override_charge=false msfragger.precursor_mass_lower=-20 msfragger.precursor_mass_mode=selected msfragger.precursor_mass_units=1 msfragger.precursor_mass_upper=20 msfragger.precursor_true_tolerance=20 msfragger.precursor_true_units=1 msfragger.remainder_fragment_masses= msfragger.remove_precursor_peak=1 msfragger.report_alternative_proteins=true msfragger.require_precursor=true msfragger.restrict_deltamass_to=all msfragger.reuse_dia_fragment_peaks=true msfragger.run-msfragger=true msfragger.search_enzyme_cut_1=KR msfragger.search_enzyme_cut_2= msfragger.search_enzyme_name_1=stricttrypsin msfragger.search_enzyme_name_2=null msfragger.search_enzyme_nocut_1= msfragger.search_enzyme_nocut_2= msfragger.search_enzyme_sense_1=C msfragger.search_enzyme_sense_2=C msfragger.table.fix-mods=0.0,C-Term Peptide,true,-1; 0.0,N-Term Peptide,true,-1; 0.0,C-Term Protein,true,-1; 0.0,N-Term Protein,true,-1; 0.0,G (glycine),true,-1; 0.0,A (alanine),true,-1; 0.0,S (serine),true,-1; 0.0,P (proline),true,-1; 0.0,V (valine),true,-1; 0.0,T (threonine),true,-1; 57.02146,C (cysteine),true,-1; 0.0,L (leucine),true,-1; 0.0,I (isoleucine),true,-1; 0.0,N (asparagine),true,-1; 0.0,D (aspartic acid),true,-1; 0.0,Q (glutamine),true,-1; 0.0,K (lysine),true,-1; 0.0,E (glutamic acid),true,-1; 0.0,M (methionine),true,-1; 0.0,H (histidine),true,-1; 0.0,F (phenylalanine),true,-1; 0.0,R (arginine),true,-1; 0.0,Y (tyrosine),true,-1; 0.0,W (tryptophan),true,-1; 0.0,B ,true,-1; 0.0,J,true,-1; 0.0,O,true,-1; 0.0,U,true,-1; 0.0,X,true,-1; 0.0,Z,true,-1 msfragger.table.var-mods=15.9949,M,true,2; 42.0106,[^,true,1; 79.96633,STY,false,3; -17.0265,nQnC,false,1; -18.0106,nE,false,1; 43.0422,]^,true,1; 43.0422,DE,true,2; 87.03203,]^,true,1; 87.03203,DE,true,2; 0.0,site_10,false,1; 0.0,site_11,false,1; 0.0,site_12,false,1; 0.0,site_13,false,1; 0.0,site_14,false,1; 0.0,site_15,false,1; 0.0,site_16,false,1 msfragger.track_zero_topN=0 msfragger.use_all_mods_in_first_search=false msfragger.use_detailed_offsets=false msfragger.use_topN_peaks=300 msfragger.write_calibrated_mzml=true msfragger.write_uncalibrated_mgf=false msfragger.zero_bin_accept_expect=0 msfragger.zero_bin_mult_expect=1 opair.activation1=HCD opair.activation2=ETD opair.filterOxonium=true opair.glyco_db= opair.max_glycans=4 opair.max_isotope_error=2 opair.min_isotope_error=0 opair.ms1_tol=20 opair.ms2_tol=20 opair.oxonium_filtering_file= opair.oxonium_minimum_intensity=0.05 opair.reverse_scan_order=false opair.run-opair=false opair.single_scan_type=false peptide-prophet.cmd-opts=--decoyprobs --ppm --accmass --nonparam --expectscore peptide-prophet.combine-pepxml=false peptide-prophet.run-peptide-prophet=false percolator.cmd-opts=--only-psms --no-terminate --post-processing-tdc percolator.keep-tsv-files=false percolator.min-prob=0.5 percolator.run-percolator=true phi-report.dont-use-prot-proph-file=false phi-report.filter=--picked --prot 0.01 phi-report.pep-level-summary=true phi-report.philosoher-msstats=false phi-report.print-decoys=false phi-report.prot-level-summary=true phi-report.remove-contaminants=true phi-report.run-report=true protein-prophet.cmd-opts=--maxppmdiff 2000000 protein-prophet.run-protein-prophet=true ptmprophet.cmdline=KEEPOLD STATIC EM\=1 NIONS\=b M\:15.9949,n\:42.0106,c\:43.0422,DE\:43.0422,c\:87.03203,DE\:87.03203 MINPROB\=0.5 ptmprophet.run-ptmprophet=true ptmshepherd.adv_params=false ptmshepherd.annotation-common=false ptmshepherd.annotation-custom=false ptmshepherd.annotation-glyco=false ptmshepherd.annotation-unimod=true ptmshepherd.annotation_file= ptmshepherd.annotation_tol=0.01 ptmshepherd.cap_y_ions= ptmshepherd.decoy_type=1 ptmshepherd.diag_ions= ptmshepherd.diagextract_mode=false ptmshepherd.diagmine_diagMinFoldChange=3.0 ptmshepherd.diagmine_diagMinSpecDiff=00.2 ptmshepherd.diagmine_fragMinFoldChange=3.0 ptmshepherd.diagmine_fragMinPropensity=00.1 ptmshepherd.diagmine_fragMinSpecDiff=00.1 ptmshepherd.diagmine_minIonsPerSpec=2 ptmshepherd.diagmine_minPeps=25 ptmshepherd.diagmine_mode=false ptmshepherd.diagmine_pepMinFoldChange=3.0 ptmshepherd.diagmine_pepMinSpecDiff=00.2 ptmshepherd.glyco_adducts= ptmshepherd.glyco_fdr=1.00 ptmshepherd.glyco_isotope_max=3 ptmshepherd.glyco_isotope_min=-1 ptmshepherd.glyco_mode=true ptmshepherd.glyco_ppm_tol=50 ptmshepherd.glycodatabase= ptmshepherd.histo_smoothbins=2 ptmshepherd.iontype_a=false ptmshepherd.iontype_b=true ptmshepherd.iontype_c=true ptmshepherd.iontype_x=false ptmshepherd.iontype_y=true ptmshepherd.iontype_z=true ptmshepherd.iterloc_maxEpoch=100 ptmshepherd.iterloc_mode=false ptmshepherd.localization_allowed_res= ptmshepherd.localization_background=4 ptmshepherd.max_adducts=0 ptmshepherd.n_glyco=true ptmshepherd.normalization-psms=true ptmshepherd.normalization-scans=false ptmshepherd.output_extended=false ptmshepherd.peakpicking_mass_units=0 ptmshepherd.peakpicking_minPsm=10 ptmshepherd.peakpicking_promRatio=0.3 ptmshepherd.peakpicking_width=0.002 ptmshepherd.precursor_mass_units=0 ptmshepherd.precursor_tol=0.01 ptmshepherd.print_decoys=false ptmshepherd.print_full_glyco_params=false ptmshepherd.prob_dhexOx= ptmshepherd.prob_dhexY= ptmshepherd.prob_mass=0.5 ptmshepherd.prob_neuacOx= ptmshepherd.prob_neugcOx= ptmshepherd.prob_phosphoOx= ptmshepherd.prob_regY= ptmshepherd.prob_sulfoOx= ptmshepherd.remainder_masses= ptmshepherd.remove_glycan_delta_mass=true ptmshepherd.run-shepherd=false ptmshepherd.run_diagextract_mode=false ptmshepherd.run_diagmine_mode=false ptmshepherd.run_glyco_mode=false ptmshepherd.spectra_maxfragcharge=2 ptmshepherd.spectra_ppmtol=20 ptmshepherd.varmod_masses= quantitation.run-label-free-quant=false run-psm-validation=true run-validation-tab=true saintexpress.fragpipe.cmd-opts= saintexpress.max-replicates=10 saintexpress.run-saint-express=false saintexpress.virtual-controls=100 skyline.run-skyline=false skyline.skyline=true skyline.skyline-custom=false skyline.skyline-custom-path= skyline.skyline-daily=false skyline.skyline-mode=0 skyline.skyline-mods-mode=Default speclibgen.convert-pepxml=true speclibgen.convert-psm=false speclibgen.easypqp.extras.max_delta_ppm=15 speclibgen.easypqp.extras.max_delta_unimod=0.02 speclibgen.easypqp.extras.max_glycan_qval=1 speclibgen.easypqp.extras.rt_lowess_fraction=0 speclibgen.easypqp.fragment.a=false speclibgen.easypqp.fragment.b=true speclibgen.easypqp.fragment.c=false speclibgen.easypqp.fragment.x=false speclibgen.easypqp.fragment.y=true speclibgen.easypqp.fragment.z=false speclibgen.easypqp.ignore_unannotated=false speclibgen.easypqp.im-cal=Automatic selection of a run as reference IM speclibgen.easypqp.labile_mode=Regular (not glyco) speclibgen.easypqp.neutral_loss=false speclibgen.easypqp.rt-cal=noiRT speclibgen.easypqp.select-file.text= speclibgen.easypqp.select-im-file.text= speclibgen.keep-intermediate-files=false speclibgen.run-speclibgen=true tab-run.delete_calibrated_mzml=false tab-run.delete_temp_files=false tab-run.sub_mzml_prob_threshold=0.5 tab-run.write_sub_mzml=false tmtintegrator.add_Ref=-1 tmtintegrator.aggregation_method=0 tmtintegrator.allow_overlabel=true tmtintegrator.allow_unlabeled=true tmtintegrator.best_psm=true tmtintegrator.channel_num=TMT-6 tmtintegrator.dont-run-fq-lq=false tmtintegrator.extraction_tool=IonQuant tmtintegrator.glyco_qval=-1 tmtintegrator.groupby=0 tmtintegrator.log2transformed=true tmtintegrator.max_pep_prob_thres=0 tmtintegrator.min_ntt=0 tmtintegrator.min_pep_prob=0.9 tmtintegrator.min_percent=0.05 tmtintegrator.min_purity=0.5 tmtintegrator.min_site_prob=-1 tmtintegrator.mod_tag=none tmtintegrator.ms1_int=true tmtintegrator.outlier_removal=true tmtintegrator.philosopher-msstats=false tmtintegrator.print_RefInt=false tmtintegrator.prot_exclude=none tmtintegrator.prot_norm=0 tmtintegrator.psm_norm=false tmtintegrator.quant_level=2 tmtintegrator.ref_tag=Bridge tmtintegrator.run-tmtintegrator=false tmtintegrator.tolerance=20 tmtintegrator.top3_pep=true tmtintegrator.unique_gene=0 tmtintegrator.unique_pep=false tmtintegrator.use_glycan_composition=false workdir=D\:\\20240927_SW-KF\\PLD_method\\output workflow.input.data-type.im-ms=false workflow.input.data-type.regular-ms=true workflow.misc.save-sdrf=true workflow.ram=0 workflow.threads=23 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ CheckCentroid C:\Users\dubia\OneDrive\Desktop\FragPipe-jre-22.0\fragpipe\jre\bin\java.exe -Xmx48G -cp C:\Users\dubia\OneDrive\Desktop\FragPipe-jre-22.0\fragpipe\lib\fragpipe-22.0.jar;C:\Users\dubia\OneDrive\Desktop\FragPipe-jre-22.0\fragpipe\tools\batmass-io-1.33.4.jar com.dmtavt.fragpipe.util.CheckCentroid D:\20240927_SW-KF\PLD_method\raw\20240927_SW-KF_S1_PLD_Slot2-38_1_8058.d 23 Done in 0.0 s. Process 'CheckCentroid' finished, exit code: 0 WorkspaceCleanInit [Work dir: D:\20240927_SW-KF\PLD_method\output] C:\Users\dubia\OneDrive\Desktop\FragPipe-jre-22.0\fragpipe\tools\Philosopher\philosopher-v5.1.1.exe workspace --clean --nocheck time="23:20:17" level=info msg="Executing Workspace v5.1.1" time="23:20:17" level=info msg="Removing workspace" time="23:20:17" level=info msg=Done Process 'WorkspaceCleanInit' finished, exit code: 0 WorkspaceCleanInit [Work dir: D:\20240927_SW-KF\PLD_method\output] C:\Users\dubia\OneDrive\Desktop\FragPipe-jre-22.0\fragpipe\tools\Philosopher\philosopher-v5.1.1.exe workspace --init --nocheck --temp C:\Users\dubia\AppData\Local\Temp\295e6381-9ad7-4c19-8d8b-54ca50528c41 time="23:20:17" level=info msg="Executing Workspace v5.1.1" time="23:20:17" level=info msg="Creating workspace" time="23:20:17" level=info msg=Done Process 'WorkspaceCleanInit' finished, exit code: 0 diaTracer [Work dir: D:\20240927_SW-KF\PLD_method\output] C:\Users\dubia\OneDrive\Desktop\FragPipe-jre-22.0\fragpipe\jre\bin\java.exe -Xmx48G -Dlibs.bruker.dir=C:\Users\dubia\OneDrive\Desktop\FragPipe-jre-22.0\fragpipe\lib\..\tools\MSFragger-4.1\ext\bruker -cp C:\Users\dubia\OneDrive\Desktop\FragPipe-jre-22.0\fragpipe\tools\batmass-io-1.33.4.jar;C:\Users\dubia\OneDrive\Desktop\FragPipe-jre-22.0\fragpipe\tools\diaTracer-1.1.5.jar diatracer.diaTracerMainClass --dFilePath D:\20240927_SW-KF\PLD_method\raw\20240927_SW-KF_S1_PLD_Slot2-38_1_8058.d --workDir D:\20240927_SW-KF\PLD_method\output --threadNum 23 --writeInter 0 --deltaApexIM 0.01 --deltaApexRT 3 --massDefectFilter 0 --massDefectOffset 0.1 --ms1MS2Corr 0.3 --RFMax 500 2024-10-03 23:20:17 [INFO] - Start Finished diff. Smallest IM diff is 7.136082021728107E-4 Smallest MZ diff is 0.0015783202415349251 Biggest IM is 1.400951488977581 Biggest MZ is 1700.004806958517 Smallest IM is 0.6007747321536563 Smallest MZ is 99.9992215303281 MS1 scan number is 2135 MS2 scan number is 19215 2024-10-03 23:20:29 [INFO] - Collected raw file statistics in 11.79 s 2024-10-03 23:24:47 [INFO] - Extracted MS1 data in 257.82 s No peaks found in isolation window MZ: 147.613-172.610 IM: .629-.594 No peaks found in isolation window MZ: 172.610-197.611 IM: .629-.612 No peaks found in isolation window MZ: 197.611-222.611 IM: .631-.632 2024-10-03 23:24:58 [INFO] - Grouped isotopes in 10.65 s 2024-10-04 00:01:21 [INFO] - Extracted MS2 data in 2183.50 s 2024-10-04 00:01:21 [INFO] - Writing mzML file...1130205 scans 2024-10-04 00:03:38 [INFO] - Wrote mzML file in 137.01 s 2024-10-04 00:03:38 [INFO] - Total run time: 43.35 min Process 'diaTracer' finished, exit code: 0 diaTracer [Work dir: D:\20240927_SW-KF\PLD_method\output] C:\Users\dubia\OneDrive\Desktop\FragPipe-jre-22.0\fragpipe\jre\bin\java.exe -Xmx48G -Dlibs.bruker.dir=C:\Users\dubia\OneDrive\Desktop\FragPipe-jre-22.0\fragpipe\lib\..\tools\MSFragger-4.1\ext\bruker -cp C:\Users\dubia\OneDrive\Desktop\FragPipe-jre-22.0\fragpipe\tools\batmass-io-1.33.4.jar;C:\Users\dubia\OneDrive\Desktop\FragPipe-jre-22.0\fragpipe\tools\diaTracer-1.1.5.jar diatracer.diaTracerMainClass --dFilePath D:\20240927_SW-KF\PLD_method\raw\20240927_SW-KF_S1_sup_Slot2-37_1_8056.d --workDir D:\20240927_SW-KF\PLD_method\output --threadNum 23 --writeInter 0 --deltaApexIM 0.01 --deltaApexRT 3 --massDefectFilter 0 --massDefectOffset 0.1 --ms1MS2Corr 0.3 --RFMax 500 2024-10-04 00:03:39 [INFO] - Start Finished diff. Smallest IM diff is 7.136082021728107E-4 Smallest MZ diff is 0.001577499418459638 Biggest IM is 1.400951488977581 Biggest MZ is 1700.004811048071 Smallest IM is 0.6007747321536563 Smallest MZ is 99.99922392214272 MS1 scan number is 2135 MS2 scan number is 19215 2024-10-04 00:03:49 [INFO] - Collected raw file statistics in 10.08 s 2024-10-04 00:07:18 [INFO] - Extracted MS1 data in 208.84 s No peaks found in isolation window MZ: 172.611-197.610 IM: .629-.612 No peaks found in isolation window MZ: 197.610-222.613 IM: .631-.632 No peaks found in isolation window MZ: 222.613-247.612 IM: .631-.652 No peaks found in isolation window MZ: 147.612-172.611 IM: .629-.594 2024-10-04 00:07:25 [INFO] - Grouped isotopes in 7.03 s 2024-10-04 00:30:07 [INFO] - Extracted MS2 data in 1362.82 s 2024-10-04 00:30:07 [INFO] - Writing mzML file...1054573 scans 2024-10-04 00:32:15 [INFO] - Wrote mzML file in 127.44 s 2024-10-04 00:32:15 [INFO] - Total run time: 28.61 min Process 'diaTracer' finished, exit code: 0 diaTracer [Work dir: D:\20240927_SW-KF\PLD_method\output] C:\Users\dubia\OneDrive\Desktop\FragPipe-jre-22.0\fragpipe\jre\bin\java.exe -Xmx48G -Dlibs.bruker.dir=C:\Users\dubia\OneDrive\Desktop\FragPipe-jre-22.0\fragpipe\lib\..\tools\MSFragger-4.1\ext\bruker -cp C:\Users\dubia\OneDrive\Desktop\FragPipe-jre-22.0\fragpipe\tools\batmass-io-1.33.4.jar;C:\Users\dubia\OneDrive\Desktop\FragPipe-jre-22.0\fragpipe\tools\diaTracer-1.1.5.jar diatracer.diaTracerMainClass --dFilePath D:\20240927_SW-KF\PLD_method\raw\20240927_SW-KF_S1_total_Slot2-36_1_8055.d --workDir D:\20240927_SW-KF\PLD_method\output --threadNum 23 --writeInter 0 --deltaApexIM 0.01 --deltaApexRT 3 --massDefectFilter 0 --massDefectOffset 0.1 --ms1MS2Corr 0.3 --RFMax 500 2024-10-04 00:32:15 [INFO] - Start Finished diff. Smallest IM diff is 7.136082021728107E-4 Smallest MZ diff is 0.001577288166146218 Biggest IM is 1.400951488977581 Biggest MZ is 1700.0049436810948 Smallest IM is 0.6007747321536563 Smallest MZ is 99.9992326607623 MS1 scan number is 2135 MS2 scan number is 19215 2024-10-04 00:32:24 [INFO] - Collected raw file statistics in 8.73 s 2024-10-04 00:35:13 [INFO] - Extracted MS1 data in 169.25 s No peaks found in isolation window MZ: 172.611-197.610 IM: .629-.612 No peaks found in isolation window MZ: 147.611-172.611 IM: .629-.594 No peaks found in isolation window MZ: 222.613-247.613 IM: .631-.652 No peaks found in isolation window MZ: 197.610-222.613 IM: .631-.632 2024-10-04 00:35:26 [INFO] - Grouped isotopes in 12.42 s 2024-10-04 00:57:55 [INFO] - Extracted MS2 data in 1349.25 s 2024-10-04 00:57:55 [INFO] - Writing mzML file...1078367 scans 2024-10-04 00:59:58 [INFO] - Wrote mzML file in 123.24 s 2024-10-04 00:59:58 [INFO] - Total run time: 27.72 min Process 'diaTracer' finished, exit code: 0 diaTracer [Work dir: D:\20240927_SW-KF\PLD_method\output] C:\Users\dubia\OneDrive\Desktop\FragPipe-jre-22.0\fragpipe\jre\bin\java.exe -Xmx48G -Dlibs.bruker.dir=C:\Users\dubia\OneDrive\Desktop\FragPipe-jre-22.0\fragpipe\lib\..\tools\MSFragger-4.1\ext\bruker -cp C:\Users\dubia\OneDrive\Desktop\FragPipe-jre-22.0\fragpipe\tools\batmass-io-1.33.4.jar;C:\Users\dubia\OneDrive\Desktop\FragPipe-jre-22.0\fragpipe\tools\diaTracer-1.1.5.jar diatracer.diaTracerMainClass --dFilePath D:\20240927_SW-KF\PLD_method\raw\20240927_SW-KF_S2_PLD_Slot2-41_1_8063.d --workDir D:\20240927_SW-KF\PLD_method\output --threadNum 23 --writeInter 0 --deltaApexIM 0.01 --deltaApexRT 3 --massDefectFilter 0 --massDefectOffset 0.1 --ms1MS2Corr 0.3 --RFMax 500 2024-10-04 00:59:59 [INFO] - Start Finished diff. Smallest IM diff is 7.136082021728107E-4 Smallest MZ diff is 0.0015776118816006601 Biggest IM is 1.400951488977581 Biggest MZ is 1700.0052927016534 Smallest IM is 0.6007747321536563 Smallest MZ is 99.9992276063465 MS1 scan number is 2135 MS2 scan number is 19215 2024-10-04 01:00:10 [INFO] - Collected raw file statistics in 11.64 s 2024-10-04 01:03:13 [INFO] - Extracted MS1 data in 183.03 s No peaks found in isolation window MZ: 172.612-197.613 IM: .629-.612 No peaks found in isolation window MZ: 147.611-172.612 IM: .629-.594 No peaks found in isolation window MZ: 197.613-222.610 IM: .631-.632 No peaks found in isolation window MZ: 222.610-247.611 IM: .631-.652 2024-10-04 01:03:20 [INFO] - Grouped isotopes in 7.22 s 2024-10-04 01:23:09 [INFO] - Extracted MS2 data in 1188.70 s 2024-10-04 01:23:09 [INFO] - Writing mzML file...740867 scans 2024-10-04 01:24:41 [INFO] - Wrote mzML file in 91.79 s 2024-10-04 01:24:41 [INFO] - Total run time: 24.71 min Process 'diaTracer' finished, exit code: 0 diaTracer [Work dir: D:\20240927_SW-KF\PLD_method\output] C:\Users\dubia\OneDrive\Desktop\FragPipe-jre-22.0\fragpipe\jre\bin\java.exe -Xmx48G -Dlibs.bruker.dir=C:\Users\dubia\OneDrive\Desktop\FragPipe-jre-22.0\fragpipe\lib\..\tools\MSFragger-4.1\ext\bruker -cp C:\Users\dubia\OneDrive\Desktop\FragPipe-jre-22.0\fragpipe\tools\batmass-io-1.33.4.jar;C:\Users\dubia\OneDrive\Desktop\FragPipe-jre-22.0\fragpipe\tools\diaTracer-1.1.5.jar diatracer.diaTracerMainClass --dFilePath D:\20240927_SW-KF\PLD_method\raw\20240927_SW-KF_S2_sup_Slot2-40_1_8061.d --workDir D:\20240927_SW-KF\PLD_method\output --threadNum 23 --writeInter 0 --deltaApexIM 0.01 --deltaApexRT 3 --massDefectFilter 0 --massDefectOffset 0.1 --ms1MS2Corr 0.3 --RFMax 500 2024-10-04 01:24:41 [INFO] - Start Finished diff. Smallest IM diff is 7.136082021728107E-4 Smallest MZ diff is 0.001577126263995865 Biggest IM is 1.400951488977581 Biggest MZ is 1700.0046755437656 Smallest IM is 0.6007747321536563 Smallest MZ is 99.99921546915478 MS1 scan number is 2135 MS2 scan number is 19215 2024-10-04 01:24:50 [INFO] - Collected raw file statistics in 8.73 s 2024-10-04 01:27:48 [INFO] - Extracted MS1 data in 177.58 s No peaks found in isolation window MZ: 197.613-222.613 IM: .631-.632 No peaks found in isolation window MZ: 147.611-172.612 IM: .629-.594 No peaks found in isolation window MZ: 222.613-247.610 IM: .631-.652 No peaks found in isolation window MZ: 172.612-197.613 IM: .629-.612 2024-10-04 01:28:01 [INFO] - Grouped isotopes in 13.74 s 2024-10-04 01:51:22 [INFO] - Extracted MS2 data in 1400.24 s 2024-10-04 01:51:22 [INFO] - Writing mzML file...1081177 scans 2024-10-04 01:53:30 [INFO] - Wrote mzML file in 128.75 s 2024-10-04 01:53:30 [INFO] - Total run time: 28.82 min Process 'diaTracer' finished, exit code: 0 diaTracer [Work dir: D:\20240927_SW-KF\PLD_method\output] C:\Users\dubia\OneDrive\Desktop\FragPipe-jre-22.0\fragpipe\jre\bin\java.exe -Xmx48G -Dlibs.bruker.dir=C:\Users\dubia\OneDrive\Desktop\FragPipe-jre-22.0\fragpipe\lib\..\tools\MSFragger-4.1\ext\bruker -cp C:\Users\dubia\OneDrive\Desktop\FragPipe-jre-22.0\fragpipe\tools\batmass-io-1.33.4.jar;C:\Users\dubia\OneDrive\Desktop\FragPipe-jre-22.0\fragpipe\tools\diaTracer-1.1.5.jar diatracer.diaTracerMainClass --dFilePath D:\20240927_SW-KF\PLD_method\raw\20240927_SW-KF_S2_total_Slot2-39_1_8060.d --workDir D:\20240927_SW-KF\PLD_method\output --threadNum 23 --writeInter 0 --deltaApexIM 0.01 --deltaApexRT 3 --massDefectFilter 0 --massDefectOffset 0.1 --ms1MS2Corr 0.3 --RFMax 500 2024-10-04 01:53:31 [INFO] - Start Finished diff. Smallest IM diff is 7.136082021728107E-4 Smallest MZ diff is 0.0015784942513192846 Biggest IM is 1.400951488977581 Biggest MZ is 1700.0047253844662 Smallest IM is 0.6007747321536563 Smallest MZ is 99.9992161249404 MS1 scan number is 2135 MS2 scan number is 19215 2024-10-04 01:53:40 [INFO] - Collected raw file statistics in 8.96 s 2024-10-04 01:56:33 [INFO] - Extracted MS1 data in 173.04 s No peaks found in isolation window MZ: 172.610-197.610 IM: .629-.612 No peaks found in isolation window MZ: 222.613-247.613 IM: .631-.652 No peaks found in isolation window MZ: 147.611-172.610 IM: .629-.594 No peaks found in isolation window MZ: 197.610-222.613 IM: .631-.632 2024-10-04 01:56:42 [INFO] - Grouped isotopes in 9.14 s 2024-10-04 02:19:31 [INFO] - Extracted MS2 data in 1368.68 s 2024-10-04 02:19:31 [INFO] - Writing mzML file...1112894 scans 2024-10-04 02:21:32 [INFO] - Wrote mzML file in 121.92 s 2024-10-04 02:21:33 [INFO] - Total run time: 28.03 min Process 'diaTracer' finished, exit code: 0 MSFragger [Work dir: D:\20240927_SW-KF\PLD_method\output] C:\Users\dubia\OneDrive\Desktop\FragPipe-jre-22.0\fragpipe\jre\bin\java.exe -jar -Dfile.encoding=UTF-8 -Xmx48G C:\Users\dubia\OneDrive\Desktop\FragPipe-jre-22.0\fragpipe\lib\..\tools\MSFragger-4.1\MSFragger-4.1.jar D:\20240927_SW-KF\PLD_method\output\fragger_dda.params D:\20240927_SW-KF\PLD_method\raw\20240927_SW-KF_S1_PLD_Slot2-38_1_8058_diatracer.mzML D:\20240927_SW-KF\PLD_method\raw\20240927_SW-KF_S1_sup_Slot2-37_1_8056_diatracer.mzML D:\20240927_SW-KF\PLD_method\raw\20240927_SW-KF_S1_total_Slot2-36_1_8055_diatracer.mzML D:\20240927_SW-KF\PLD_method\raw\20240927_SW-KF_S2_PLD_Slot2-41_1_8063_diatracer.mzML D:\20240927_SW-KF\PLD_method\raw\20240927_SW-KF_S2_sup_Slot2-40_1_8061_diatracer.mzML D:\20240927_SW-KF\PLD_method\raw\20240927_SW-KF_S2_total_Slot2-39_1_8060_diatracer.mzML MSFragger version MSFragger-4.1 Batmass-IO version 1.33.4 timsdata library version timsdata-2-21-0-4 (c) University of Michigan RawFileReader reading tool. Copyright (c) 2016 by Thermo Fisher Scientific, Inc. All rights reserved. timdTOF .d reading tool. Copyright (c) 2022 by Bruker Daltonics GmbH & Co. KG. All rights reserved. System OS: Windows 11, Architecture: AMD64 Java Info: 17.0.10, OpenJDK 64-Bit Server VM, Eclipse Adoptium JVM started with 48 GB memory Checking database... ***********************************FIRST SEARCH************************************ Parameters: num_threads = 23 database_name = D:\20240927_SW-KF\sequence\2024-10-03-decoys-contam-UP000005640.fas decoy_prefix = rev_ precursor_mass_lower = -20.0 precursor_mass_upper = 20.0 precursor_mass_units = 1 data_type = 0 precursor_true_tolerance = 20.0 precursor_true_units = 1 fragment_mass_tolerance = 20.0 fragment_mass_units = 1 calibrate_mass = 2 use_all_mods_in_first_search = 0 write_calibrated_mzml = 1 write_uncalibrated_mgf = 0 write_mzbin_all = 0 isotope_error = 0/1 mass_offsets = 0 labile_search_mode = OFF restrict_deltamass_to = all precursor_mass_mode = SELECTED localize_delta_mass = 0 delta_mass_exclude_ranges = (-1.5,3.5) fragment_ion_series = b,y ion_series_definitions = search_enzyme_name = stricttrypsin search_enzyme_sense_1 = C search_enzyme_cut_1 = KR search_enzyme_nocut_1 = allowed_missed_cleavage_1 = 2 num_enzyme_termini = 2 clip_nTerm_M = 1 allow_multiple_variable_mods_on_residue = 0 max_variable_mods_per_peptide = 3 max_variable_mods_combinations = 5000 output_format = pepxml_pin output_report_topN = 1 output_max_expect = 50.0 report_alternative_proteins = 0 override_charge = 0 precursor_charge_low = 2 precursor_charge_high = 3 digest_min_length = 7 digest_max_length = 50 digest_mass_range_low = 500.0 digest_mass_range_high = 5000.0 max_fragment_charge = 1 deisotope = 1 deneutralloss = 1 track_zero_topN = 0 zero_bin_accept_expect = 0.0 zero_bin_mult_expect = 1.0 minimum_peaks = 15 use_topN_peaks = 300 minIonsScoring = 2 min_matched_fragments = 4 minimum_ratio = 0.0 intensity_transform = 0 activation_types = all analyzer_types = all group_variable = 0 require_precursor = 1 reuse_dia_fragment_peaks = 1 remove_precursor_peak = 1 remove_precursor_range = -1.500000,1.500000 clear_mz_range_low = 0.0 clear_mz_range_high = 0.0 excluded_scan_list_file = mass_diff_to_variable_mod = 0 min_sequence_matches = 2 check_spectral_files = 0 variable_mod_01 = 15.9949 M 2 variable_mod_02 = 42.0106 [^ 1 add_A_alanine = 0.0 add_B_user_amino_acid = 0.0 add_C_cysteine = 57.02146 add_Cterm_peptide = 0.0 add_Cterm_protein = 0.0 add_D_aspartic_acid = 0.0 add_E_glutamic_acid = 0.0 add_F_phenylalanine = 0.0 add_G_glycine = 0.0 add_H_histidine = 0.0 add_I_isoleucine = 0.0 add_J_user_amino_acid = 0.0 add_K_lysine = 0.0 add_L_leucine = 0.0 add_M_methionine = 0.0 add_N_asparagine = 0.0 add_Nterm_peptide = 0.0 add_Nterm_protein = 0.0 add_O_user_amino_acid = 0.0 # O = pyrrolysine (237.14773 Da) add_P_proline = 0.0 add_Q_glutamine = 0.0 add_R_arginine = 0.0 add_S_serine = 0.0 add_T_threonine = 0.0 add_U_user_amino_acid = 0.0 # U = selenocysteine (150.95363 Da) add_V_valine = 0.0 add_W_tryptophan = 0.0 add_X_user_amino_acid = 0.0 add_Y_tyrosine = 0.0 add_Z_user_amino_acid = 0.0 Selected fragment index width 0.10 Da. 400305536 fragments to be searched in 1 slices (5.97 GB total) Operating on slice 1 of 1: Fragment index slice generated in 2.80 s 001. 20240927_SW-KF_S1_PLD_Slot2-38_1_8058_diatracer.mzML 58.4 s | deisotoping 12.6 s [progress: 1128789/1128789 (100%) - 22965 spectra/s] 49.2s | postprocessing 3.0 s 002. 20240927_SW-KF_S1_sup_Slot2-37_1_8056_diatracer.mzML 46.1 s | deisotoping 10.8 s [progress: 1050929/1050929 (100%) - 22885 spectra/s] 45.9s | postprocessing 4.8 s 003. 20240927_SW-KF_S1_total_Slot2-36_1_8055_diatracer.mzML 44.2 s | deisotoping 10.8 s [progress: 1074800/1074800 (100%) - 23188 spectra/s] 46.4s | postprocessing 5.6 s 004. 20240927_SW-KF_S2_PLD_Slot2-41_1_8063_diatracer.mzML 30.9 s | deisotoping 7.0 s [progress: 739669/739669 (100%) - 25363 spectra/s] 29.2s | postprocessing 3.6 s 005. 20240927_SW-KF_S2_sup_Slot2-40_1_8061_diatracer.mzML 43.9 s | deisotoping 10.8 s [progress: 1077745/1077745 (100%) - 24115 spectra/s] 44.7s | postprocessing 5.8 s 006. 20240927_SW-KF_S2_total_Slot2-39_1_8060_diatracer.mzML 46.0 s | deisotoping 11.3 s [progress: 1108952/1108952 (100%) - 23193 spectra/s] 47.8s | postprocessing 5.9 s ***************************FIRST SEARCH DONE IN 10.677 MIN************************** *********************MASS CALIBRATION AND PARAMETER OPTIMIZATION******************* -----|---------------|---------------|---------------|--------------- | MS1 (Old) | MS1 (New) | MS2 (Old) | MS2 (New) -----|---------------|---------------|---------------|--------------- Run | Median MAD | Median MAD | Median MAD | Median MAD 001 | -3.66 3.97 | 0.08 3.31 | -4.64 5.37 | -0.59 4.49 002 | -3.36 3.88 | 0.09 3.24 | -4.06 4.95 | -0.39 4.44 003 | -3.96 3.86 | 0.08 3.18 | -4.64 5.20 | -0.54 4.32 004 | -4.72 3.93 | 0.28 3.40 | -5.51 5.80 | -0.84 4.63 005 | -3.85 3.85 | 0.05 3.17 | -4.50 5.04 | -0.46 4.23 006 | -4.51 3.84 | 0.11 3.13 | -5.07 5.25 | -0.62 4.30 -----|---------------|---------------|---------------|--------------- Finding the optimal parameters: -------|-------|-------|-------|-------|-------|-------|-------|------- MS2 | 5 | 7 | 10 | 15 | 20 | 25 | 30 | 50 -------|-------|-------|-------|-------|-------|-------|-------|------- Count | skip | skip | 103958| 103293| skip rest -------|-------|-------|-------|-------|-------|-------|-------|------- -------|-------|-------|-------|-------|-------|------- Peaks | 300_0 | 200_0 | 175_0 | 150_1 | 125_1 | 100_1 -------|-------|-------|-------|-------|-------|------- Count | 103958| 101950| skip rest -------|-------|-------|-------|-------|-------|------- -------|------- Int. | 1 -------|------- Count | 107207 -------|------- -------|------- Rm P. | 0 -------|------- Count | 107181 -------|------- New fragment_mass_tolerance = 10.000000 PPM New use_topN_peaks = 300 New minimum_ratio = 0.000000 New intensity_transform = 1 New remove_precursor_peak = 1 ************MASS CALIBRATION AND PARAMETER OPTIMIZATION DONE IN 26.364 MIN********* ************************************MAIN SEARCH************************************ Checking database... Parameters: num_threads = 23 database_name = D:\20240927_SW-KF\sequence\2024-10-03-decoys-contam-UP000005640.fas decoy_prefix = rev_ precursor_mass_lower = -20.0 precursor_mass_upper = 20.0 precursor_mass_units = 1 data_type = 0 precursor_true_tolerance = 20.0 precursor_true_units = 1 fragment_mass_tolerance = 10.0 fragment_mass_units = 1 calibrate_mass = 2 use_all_mods_in_first_search = 0 write_calibrated_mzml = 1 write_uncalibrated_mgf = 0 write_mzbin_all = 0 isotope_error = 0/1/2 mass_offsets = 0.0 labile_search_mode = OFF restrict_deltamass_to = all precursor_mass_mode = SELECTED localize_delta_mass = 0 delta_mass_exclude_ranges = (-1.5,3.5) fragment_ion_series = b,y ion_series_definitions = search_enzyme_name = stricttrypsin search_enzyme_sense_1 = C search_enzyme_cut_1 = KR search_enzyme_nocut_1 = allowed_missed_cleavage_1 = 2 num_enzyme_termini = 2 clip_nTerm_M = 1 allow_multiple_variable_mods_on_residue = 0 max_variable_mods_per_peptide = 4 max_variable_mods_combinations = 10000 output_format = pepxml_pin output_report_topN = 1 output_max_expect = 50.0 report_alternative_proteins = 1 override_charge = 0 precursor_charge_low = 1 precursor_charge_high = 4 digest_min_length = 7 digest_max_length = 50 digest_mass_range_low = 500.0 digest_mass_range_high = 5000.0 max_fragment_charge = 1 deisotope = 1 deneutralloss = 1 track_zero_topN = 0 zero_bin_accept_expect = 0.0 zero_bin_mult_expect = 1.0 minimum_peaks = 15 use_topN_peaks = 300 minIonsScoring = 2 min_matched_fragments = 4 minimum_ratio = 0.0 intensity_transform = 1 activation_types = all analyzer_types = all group_variable = 0 require_precursor = 1 reuse_dia_fragment_peaks = 1 remove_precursor_peak = 1 remove_precursor_range = -1.500000,1.500000 clear_mz_range_low = 0.0 clear_mz_range_high = 0.0 excluded_scan_list_file = mass_diff_to_variable_mod = 0 min_sequence_matches = 2 check_spectral_files = 0 variable_mod_01 = 15.9949 M 2 variable_mod_02 = 42.0106 [^ 1 variable_mod_06 = 43.0422 ]^ 1 variable_mod_07 = 43.0422 DE 2 variable_mod_08 = 87.03203 ]^ 1 variable_mod_09 = 87.03203 DE 2 add_A_alanine = 0.0 add_B_user_amino_acid = 0.0 add_C_cysteine = 57.02146 add_Cterm_peptide = 0.0 add_Cterm_protein = 0.0 add_D_aspartic_acid = 0.0 add_E_glutamic_acid = 0.0 add_F_phenylalanine = 0.0 add_G_glycine = 0.0 add_H_histidine = 0.0 add_I_isoleucine = 0.0 add_J_user_amino_acid = 0.0 add_K_lysine = 0.0 add_L_leucine = 0.0 add_M_methionine = 0.0 add_N_asparagine = 0.0 add_Nterm_peptide = 0.0 add_Nterm_protein = 0.0 add_O_user_amino_acid = 0.0 # O = pyrrolysine (237.14773 Da) add_P_proline = 0.0 add_Q_glutamine = 0.0 add_R_arginine = 0.0 add_S_serine = 0.0 add_T_threonine = 0.0 add_U_user_amino_acid = 0.0 # U = selenocysteine (150.95363 Da) add_V_valine = 0.0 add_W_tryptophan = 0.0 add_X_user_amino_acid = 0.0 add_Y_tyrosine = 0.0 add_Z_user_amino_acid = 0.0 Selected fragment index width 0.05 Da. 48379329238 fragments to be searched in 24 slices (720.91 GB total) Operating on slice 1 of 24: Fragment index slice generated in 14.89 s 001. 20240927_SW-KF_S1_PLD_Slot2-38_1_8058_diatracer.mzBIN_calibrated 33.8 s [progress: 1128789/1128789 (100%) - 7724 spectra/s] 146.1s 002. 20240927_SW-KF_S1_sup_Slot2-37_1_8056_diatracer.mzBIN_calibrated 18.8 s [progress: 1050929/1050929 (100%) - 7906 spectra/s] 132.9s 003. 20240927_SW-KF_S1_total_Slot2-36_1_8055_diatracer.mzBIN_calibrated 19.3 s [progress: 1074800/1074800 (100%) - 7856 spectra/s] 136.8s 004. 20240927_SW-KF_S2_PLD_Slot2-41_1_8063_diatracer.mzBIN_calibrated 14.5 s [progress: 739669/739669 (100%) - 8213 spectra/s] 90.1s 005. 20240927_SW-KF_S2_sup_Slot2-40_1_8061_diatracer.mzBIN_calibrated 19.1 s [progress: 1077745/1077745 (100%) - 7700 spectra/s] 140.0s 006. 20240927_SW-KF_S2_total_Slot2-39_1_8060_diatracer.mzBIN_calibrated 19.9 s [progress: 1108952/1108952 (100%) - 7754 spectra/s] 143.0s Operating on slice 2 of 24: Fragment index slice generated in 8.55 s 001. 20240927_SW-KF_S1_PLD_Slot2-38_1_8058_diatracer.mzBIN_calibrated 42.8 s [progress: 1128789/1128789 (100%) - 20936 spectra/s] 53.9s 002. 20240927_SW-KF_S1_sup_Slot2-37_1_8056_diatracer.mzBIN_calibrated 21.4 s [progress: 1050929/1050929 (100%) - 20846 spectra/s] 50.4s 003. 20240927_SW-KF_S1_total_Slot2-36_1_8055_diatracer.mzBIN_calibrated 19.4 s [progress: 1074800/1074800 (100%) - 21061 spectra/s] 51.0s 004. 20240927_SW-KF_S2_PLD_Slot2-41_1_8063_diatracer.mzBIN_calibrated 14.8 s [progress: 739669/739669 (100%) - 24092 spectra/s] 30.7s 005. 20240927_SW-KF_S2_sup_Slot2-40_1_8061_diatracer.mzBIN_calibrated 21.3 s [progress: 1077745/1077745 (100%) - 20054 spectra/s] 53.7s 006. 20240927_SW-KF_S2_total_Slot2-39_1_8060_diatracer.mzBIN_calibrated 19.1 s [progress: 1108952/1108952 (100%) - 20226 spectra/s] 54.8s Operating on slice 3 of 24: Fragment index slice generated in 8.71 s 001. 20240927_SW-KF_S1_PLD_Slot2-38_1_8058_diatracer.mzBIN_calibrated 37.8 s [progress: 1128789/1128789 (100%) - 26998 spectra/s] 41.8s 002. 20240927_SW-KF_S1_sup_Slot2-37_1_8056_diatracer.mzBIN_calibrated 21.2 s [progress: 1050929/1050929 (100%) - 26912 spectra/s] 39.1s 003. 20240927_SW-KF_S1_total_Slot2-36_1_8055_diatracer.mzBIN_calibrated 20.7 s [progress: 1074800/1074800 (100%) - 26921 spectra/s] 39.9s 004. 20240927_SW-KF_S2_PLD_Slot2-41_1_8063_diatracer.mzBIN_calibrated 14.8 s [progress: 739669/739669 (100%) - 29300 spectra/s] 25.2s 005. 20240927_SW-KF_S2_sup_Slot2-40_1_8061_diatracer.mzBIN_calibrated 21.3 s [progress: 1077745/1077745 (100%) - 26890 spectra/s] 40.1s 006. 20240927_SW-KF_S2_total_Slot2-39_1_8060_diatracer.mzBIN_calibrated 19.1 s [progress: 1108952/1108952 (100%) - 27032 spectra/s] 41.0s Operating on slice 4 of 24: Fragment index slice generated in 8.11 s 001. 20240927_SW-KF_S1_PLD_Slot2-38_1_8058_diatracer.mzBIN_calibrated 35.6 s [progress: 1128789/1128789 (100%) - 28249 spectra/s] 40.0s 002. 20240927_SW-KF_S1_sup_Slot2-37_1_8056_diatracer.mzBIN_calibrated 20.9 s [progress: 1050929/1050929 (100%) - 29411 spectra/s] 35.7s 003. 20240927_SW-KF_S1_total_Slot2-36_1_8055_diatracer.mzBIN_calibrated 21.9 s [progress: 1074800/1074800 (100%) - 29722 spectra/s] 36.2s 004. 20240927_SW-KF_S2_PLD_Slot2-41_1_8063_diatracer.mzBIN_calibrated 14.4 s [progress: 739669/739669 (100%) - 30775 spectra/s] 24.0s 005. 20240927_SW-KF_S2_sup_Slot2-40_1_8061_diatracer.mzBIN_calibrated 21.0 s [progress: 1077745/1077745 (100%) - 28443 spectra/s] 37.9s 006. 20240927_SW-KF_S2_total_Slot2-39_1_8060_diatracer.mzBIN_calibrated 19.1 s [progress: 1108952/1108952 (100%) - 29386 spectra/s] 37.7s Operating on slice 5 of 24: Fragment index slice generated in 8.64 s 001. 20240927_SW-KF_S1_PLD_Slot2-38_1_8058_diatracer.mzBIN_calibrated 32.3 s [progress: 1128789/1128789 (100%) - 29063 spectra/s] 38.8s 002. 20240927_SW-KF_S1_sup_Slot2-37_1_8056_diatracer.mzBIN_calibrated 21.0 s [progress: 1050929/1050929 (100%) - 30605 spectra/s] 34.3s 003. 20240927_SW-KF_S1_total_Slot2-36_1_8055_diatracer.mzBIN_calibrated 21.3 s [progress: 1074800/1074800 (100%) - 30928 spectra/s] 34.8s 004. 20240927_SW-KF_S2_PLD_Slot2-41_1_8063_diatracer.mzBIN_calibrated 17.1 s [progress: 739669/739669 (100%) - 30884 spectra/s] 24.0s 005. 20240927_SW-KF_S2_sup_Slot2-40_1_8061_diatracer.mzBIN_calibrated 21.1 s [progress: 1077745/1077745 (100%) - 30475 spectra/s] 35.4s 006. 20240927_SW-KF_S2_total_Slot2-39_1_8060_diatracer.mzBIN_calibrated 23.3 s [progress: 1108952/1108952 (100%) - 30320 spectra/s] 36.6s Operating on slice 6 of 24: Fragment index slice generated in 8.49 s 001. 20240927_SW-KF_S1_PLD_Slot2-38_1_8058_diatracer.mzBIN_calibrated 33.6 s [progress: 1128789/1128789 (100%) - 29102 spectra/s] 38.8s 002. 20240927_SW-KF_S1_sup_Slot2-37_1_8056_diatracer.mzBIN_calibrated 20.9 s [progress: 1050929/1050929 (100%) - 30330 spectra/s] 34.7s 003. 20240927_SW-KF_S1_total_Slot2-36_1_8055_diatracer.mzBIN_calibrated 21.0 s [progress: 1074800/1074800 (100%) - 30407 spectra/s] 35.3s 004. 20240927_SW-KF_S2_PLD_Slot2-41_1_8063_diatracer.mzBIN_calibrated 15.9 s [progress: 739669/739669 (100%) - 31538 spectra/s] 23.5s 005. 20240927_SW-KF_S2_sup_Slot2-40_1_8061_diatracer.mzBIN_calibrated 21.6 s [progress: 1077745/1077745 (100%) - 30607 spectra/s] 35.2s 006. 20240927_SW-KF_S2_total_Slot2-39_1_8060_diatracer.mzBIN_calibrated 23.1 s [progress: 1108952/1108952 (100%) - 30582 spectra/s] 36.3s Operating on slice 7 of 24: Fragment index slice generated in 8.01 s 001. 20240927_SW-KF_S1_PLD_Slot2-38_1_8058_diatracer.mzBIN_calibrated 34.6 s [progress: 1128789/1128789 (100%) - 30045 spectra/s] 37.6s 002. 20240927_SW-KF_S1_sup_Slot2-37_1_8056_diatracer.mzBIN_calibrated 21.5 s [progress: 1050929/1050929 (100%) - 31571 spectra/s] 33.3s 003. 20240927_SW-KF_S1_total_Slot2-36_1_8055_diatracer.mzBIN_calibrated 20.7 s [progress: 1074800/1074800 (100%) - 31428 spectra/s] 34.2s 004. 20240927_SW-KF_S2_PLD_Slot2-41_1_8063_diatracer.mzBIN_calibrated 16.0 s [progress: 739669/739669 (100%) - 31866 spectra/s] 23.2s 005. 20240927_SW-KF_S2_sup_Slot2-40_1_8061_diatracer.mzBIN_calibrated 21.7 s [progress: 1077745/1077745 (100%) - 31166 spectra/s] 34.6s 006. 20240927_SW-KF_S2_total_Slot2-39_1_8060_diatracer.mzBIN_calibrated 22.7 s [progress: 1108952/1108952 (100%) - 30758 spectra/s] 36.1s Operating on slice 8 of 24: Fragment index slice generated in 8.43 s 001. 20240927_SW-KF_S1_PLD_Slot2-38_1_8058_diatracer.mzBIN_calibrated 33.6 s [progress: 1128789/1128789 (100%) - 30296 spectra/s] 37.3s 002. 20240927_SW-KF_S1_sup_Slot2-37_1_8056_diatracer.mzBIN_calibrated 21.8 s [progress: 1050929/1050929 (100%) - 31476 spectra/s] 33.4s 003. 20240927_SW-KF_S1_total_Slot2-36_1_8055_diatracer.mzBIN_calibrated 21.7 s [progress: 1074800/1074800 (100%) - 31812 spectra/s] 33.8s 004. 20240927_SW-KF_S2_PLD_Slot2-41_1_8063_diatracer.mzBIN_calibrated 15.4 s [progress: 739669/739669 (100%) - 31730 spectra/s] 23.3s 005. 20240927_SW-KF_S2_sup_Slot2-40_1_8061_diatracer.mzBIN_calibrated 21.4 s [progress: 1077745/1077745 (100%) - 31478 spectra/s] 34.2s 006. 20240927_SW-KF_S2_total_Slot2-39_1_8060_diatracer.mzBIN_calibrated 22.8 s [progress: 1108952/1108952 (100%) - 30955 spectra/s] 35.8s Operating on slice 9 of 24: Fragment index slice generated in 8.17 s 001. 20240927_SW-KF_S1_PLD_Slot2-38_1_8058_diatracer.mzBIN_calibrated 31.3 s [progress: 1128789/1128789 (100%) - 29950 spectra/s] 37.7s 002. 20240927_SW-KF_S1_sup_Slot2-37_1_8056_diatracer.mzBIN_calibrated 20.4 s [progress: 1050929/1050929 (100%) - 31684 spectra/s] 33.2s 003. 20240927_SW-KF_S1_total_Slot2-36_1_8055_diatracer.mzBIN_calibrated 21.6 s [progress: 1074800/1074800 (100%) - 31248 spectra/s] 34.4s 004. 20240927_SW-KF_S2_PLD_Slot2-41_1_8063_diatracer.mzBIN_calibrated 15.8 s [progress: 739669/739669 (100%) - 31919 spectra/s] 23.2s 005. 20240927_SW-KF_S2_sup_Slot2-40_1_8061_diatracer.mzBIN_calibrated 22.4 s [progress: 1077745/1077745 (100%) - 31409 spectra/s] 34.3s 006. 20240927_SW-KF_S2_total_Slot2-39_1_8060_diatracer.mzBIN_calibrated 22.2 s [progress: 1108952/1108952 (100%) - 31355 spectra/s] 35.4s Operating on slice 10 of 24: Fragment index slice generated in 8.34 s 001. 20240927_SW-KF_S1_PLD_Slot2-38_1_8058_diatracer.mzBIN_calibrated 32.9 s [progress: 1128789/1128789 (100%) - 30477 spectra/s] 37.0s 002. 20240927_SW-KF_S1_sup_Slot2-37_1_8056_diatracer.mzBIN_calibrated 21.2 s [progress: 1050929/1050929 (100%) - 31690 spectra/s] 33.2s 003. 20240927_SW-KF_S1_total_Slot2-36_1_8055_diatracer.mzBIN_calibrated 21.8 s [progress: 1074800/1074800 (100%) - 31910 spectra/s] 33.7s 004. 20240927_SW-KF_S2_PLD_Slot2-41_1_8063_diatracer.mzBIN_calibrated 16.7 s [progress: 739669/739669 (100%) - 32113 spectra/s] 23.0s 005. 20240927_SW-KF_S2_sup_Slot2-40_1_8061_diatracer.mzBIN_calibrated 21.4 s [progress: 1077745/1077745 (100%) - 31567 spectra/s] 34.1s 006. 20240927_SW-KF_S2_total_Slot2-39_1_8060_diatracer.mzBIN_calibrated 22.9 s [progress: 1108952/1108952 (100%) - 31303 spectra/s] 35.4s Operating on slice 11 of 24: Fragment index slice generated in 8.26 s 001. 20240927_SW-KF_S1_PLD_Slot2-38_1_8058_diatracer.mzBIN_calibrated 30.6 s [progress: 1128789/1128789 (100%) - 29690 spectra/s] 38.0s 002. 20240927_SW-KF_S1_sup_Slot2-37_1_8056_diatracer.mzBIN_calibrated 20.2 s [progress: 1050929/1050929 (100%) - 31228 spectra/s] 33.7s 003. 20240927_SW-KF_S1_total_Slot2-36_1_8055_diatracer.mzBIN_calibrated 19.5 s [progress: 1074800/1074800 (100%) - 31314 spectra/s] 34.3s 004. 20240927_SW-KF_S2_PLD_Slot2-41_1_8063_diatracer.mzBIN_calibrated 14.6 s [progress: 739669/739669 (100%) - 32066 spectra/s] 23.1s 005. 20240927_SW-KF_S2_sup_Slot2-40_1_8061_diatracer.mzBIN_calibrated 20.5 s [progress: 1077745/1077745 (100%) - 31197 spectra/s] 34.5s 006. 20240927_SW-KF_S2_total_Slot2-39_1_8060_diatracer.mzBIN_calibrated 21.1 s [progress: 1108952/1108952 (100%) - 31128 spectra/s] 35.6s Operating on slice 12 of 24: Fragment index slice generated in 8.62 s 001. 20240927_SW-KF_S1_PLD_Slot2-38_1_8058_diatracer.mzBIN_calibrated 30.1 s [progress: 1128789/1128789 (100%) - 30155 spectra/s] 37.4s 002. 20240927_SW-KF_S1_sup_Slot2-37_1_8056_diatracer.mzBIN_calibrated 21.5 s [progress: 1050929/1050929 (100%) - 31935 spectra/s] 32.9s 003. 20240927_SW-KF_S1_total_Slot2-36_1_8055_diatracer.mzBIN_calibrated 21.2 s [progress: 1074800/1074800 (100%) - 31477 spectra/s] 34.1s 004. 20240927_SW-KF_S2_PLD_Slot2-41_1_8063_diatracer.mzBIN_calibrated 15.5 s [progress: 739669/739669 (100%) - 32129 spectra/s] 23.0s 005. 20240927_SW-KF_S2_sup_Slot2-40_1_8061_diatracer.mzBIN_calibrated 21.5 s [progress: 1077745/1077745 (100%) - 31551 spectra/s] 34.2s 006. 20240927_SW-KF_S2_total_Slot2-39_1_8060_diatracer.mzBIN_calibrated 22.6 s [progress: 1108952/1108952 (100%) - 31252 spectra/s] 35.5s Operating on slice 13 of 24: Fragment index slice generated in 8.00 s 001. 20240927_SW-KF_S1_PLD_Slot2-38_1_8058_diatracer.mzBIN_calibrated 34.0 s [progress: 1128789/1128789 (100%) - 30735 spectra/s] 36.7s 002. 20240927_SW-KF_S1_sup_Slot2-37_1_8056_diatracer.mzBIN_calibrated 21.3 s [progress: 1050929/1050929 (100%) - 31724 spectra/s] 33.1s 003. 20240927_SW-KF_S1_total_Slot2-36_1_8055_diatracer.mzBIN_calibrated 21.4 s [progress: 1074800/1074800 (100%) - 32074 spectra/s] 33.5s 004. 20240927_SW-KF_S2_PLD_Slot2-41_1_8063_diatracer.mzBIN_calibrated 15.9 s [progress: 739669/739669 (100%) - 32253 spectra/s] 22.9s 005. 20240927_SW-KF_S2_sup_Slot2-40_1_8061_diatracer.mzBIN_calibrated 21.0 s [progress: 1077745/1077745 (100%) - 31273 spectra/s] 34.5s 006. 20240927_SW-KF_S2_total_Slot2-39_1_8060_diatracer.mzBIN_calibrated 23.3 s [progress: 1108952/1108952 (100%) - 31364 spectra/s] 35.4s Operating on slice 14 of 24: Fragment index slice generated in 8.17 s 001. 20240927_SW-KF_S1_PLD_Slot2-38_1_8058_diatracer.mzBIN_calibrated 34.0 s [progress: 1128789/1128789 (100%) - 30310 spectra/s] 37.2s 002. 20240927_SW-KF_S1_sup_Slot2-37_1_8056_diatracer.mzBIN_calibrated 21.5 s [progress: 1050929/1050929 (100%) - 32144 spectra/s] 32.7s 003. 20240927_SW-KF_S1_total_Slot2-36_1_8055_diatracer.mzBIN_calibrated 21.3 s [progress: 1074800/1074800 (100%) - 31889 spectra/s] 33.7s 004. 20240927_SW-KF_S2_PLD_Slot2-41_1_8063_diatracer.mzBIN_calibrated 16.8 s [progress: 739669/739669 (100%) - 31998 spectra/s] 23.1s 005. 20240927_SW-KF_S2_sup_Slot2-40_1_8061_diatracer.mzBIN_calibrated 21.0 s [progress: 1077745/1077745 (100%) - 31634 spectra/s] 34.1s 006. 20240927_SW-KF_S2_total_Slot2-39_1_8060_diatracer.mzBIN_calibrated 21.9 s [progress: 1108952/1108952 (100%) - 31496 spectra/s] 35.2s Operating on slice 15 of 24: Fragment index slice generated in 8.40 s 001. 20240927_SW-KF_S1_PLD_Slot2-38_1_8058_diatracer.mzBIN_calibrated 31.5 s [progress: 1128789/1128789 (100%) - 30958 spectra/s] 36.5s 002. 20240927_SW-KF_S1_sup_Slot2-37_1_8056_diatracer.mzBIN_calibrated 23.0 s [progress: 1050929/1050929 (100%) - 32008 spectra/s] 32.8s 003. 20240927_SW-KF_S1_total_Slot2-36_1_8055_diatracer.mzBIN_calibrated 20.1 s [progress: 1074800/1074800 (100%) - 32181 spectra/s] 33.4s 004. 20240927_SW-KF_S2_PLD_Slot2-41_1_8063_diatracer.mzBIN_calibrated 16.1 s [progress: 739669/739669 (100%) - 31841 spectra/s] 23.2s 005. 20240927_SW-KF_S2_sup_Slot2-40_1_8061_diatracer.mzBIN_calibrated 21.5 s [progress: 1077745/1077745 (100%) - 31891 spectra/s] 33.8s 006. 20240927_SW-KF_S2_total_Slot2-39_1_8060_diatracer.mzBIN_calibrated 23.1 s [progress: 1108952/1108952 (100%) - 31386 spectra/s] 35.3s Operating on slice 16 of 24: Fragment index slice generated in 8.12 s 001. 20240927_SW-KF_S1_PLD_Slot2-38_1_8058_diatracer.mzBIN_calibrated 32.6 s [progress: 1128789/1128789 (100%) - 30889 spectra/s] 36.5s 002. 20240927_SW-KF_S1_sup_Slot2-37_1_8056_diatracer.mzBIN_calibrated 21.0 s [progress: 1050929/1050929 (100%) - 32259 spectra/s] 32.6s 003. 20240927_SW-KF_S1_total_Slot2-36_1_8055_diatracer.mzBIN_calibrated 21.8 s [progress: 1074800/1074800 (100%) - 31882 spectra/s] 33.7s 004. 20240927_SW-KF_S2_PLD_Slot2-41_1_8063_diatracer.mzBIN_calibrated 17.2 s [progress: 739669/739669 (100%) - 31729 spectra/s] 23.3s 005. 20240927_SW-KF_S2_sup_Slot2-40_1_8061_diatracer.mzBIN_calibrated 23.7 s [progress: 1077745/1077745 (100%) - 31505 spectra/s] 34.2s 006. 20240927_SW-KF_S2_total_Slot2-39_1_8060_diatracer.mzBIN_calibrated 22.4 s [progress: 1108952/1108952 (100%) - 31509 spectra/s] 35.2s Operating on slice 17 of 24: Fragment index slice generated in 8.27 s 001. 20240927_SW-KF_S1_PLD_Slot2-38_1_8058_diatracer.mzBIN_calibrated 32.6 s [progress: 1128789/1128789 (100%) - 30724 spectra/s] 36.7s 002. 20240927_SW-KF_S1_sup_Slot2-37_1_8056_diatracer.mzBIN_calibrated 21.9 s [progress: 1050929/1050929 (100%) - 32176 spectra/s] 32.7s 003. 20240927_SW-KF_S1_total_Slot2-36_1_8055_diatracer.mzBIN_calibrated 22.6 s [progress: 1074800/1074800 (100%) - 32436 spectra/s] 33.1s 004. 20240927_SW-KF_S2_PLD_Slot2-41_1_8063_diatracer.mzBIN_calibrated 16.7 s [progress: 739669/739669 (100%) - 32195 spectra/s] 23.0s 005. 20240927_SW-KF_S2_sup_Slot2-40_1_8061_diatracer.mzBIN_calibrated 21.4 s [progress: 1077745/1077745 (100%) - 31950 spectra/s] 33.7s 006. 20240927_SW-KF_S2_total_Slot2-39_1_8060_diatracer.mzBIN_calibrated 23.1 s [progress: 1108952/1108952 (100%) - 31466 spectra/s] 35.2s Operating on slice 18 of 24: Fragment index slice generated in 8.32 s 001. 20240927_SW-KF_S1_PLD_Slot2-38_1_8058_diatracer.mzBIN_calibrated 33.6 s [progress: 1128789/1128789 (100%) - 30978 spectra/s] 36.4s 002. 20240927_SW-KF_S1_sup_Slot2-37_1_8056_diatracer.mzBIN_calibrated 21.7 s [progress: 1050929/1050929 (100%) - 31949 spectra/s] 32.9s 003. 20240927_SW-KF_S1_total_Slot2-36_1_8055_diatracer.mzBIN_calibrated 21.4 s [progress: 1074800/1074800 (100%) - 32434 spectra/s] 33.1s 004. 20240927_SW-KF_S2_PLD_Slot2-41_1_8063_diatracer.mzBIN_calibrated 15.7 s [progress: 739669/739669 (100%) - 32457 spectra/s] 22.8s 005. 20240927_SW-KF_S2_sup_Slot2-40_1_8061_diatracer.mzBIN_calibrated 21.9 s [progress: 1077745/1077745 (100%) - 31697 spectra/s] 34.0s 006. 20240927_SW-KF_S2_total_Slot2-39_1_8060_diatracer.mzBIN_calibrated 22.4 s [progress: 1108952/1108952 (100%) - 31624 spectra/s] 35.1s Operating on slice 19 of 24: Fragment index slice generated in 8.31 s 001. 20240927_SW-KF_S1_PLD_Slot2-38_1_8058_diatracer.mzBIN_calibrated 32.7 s [progress: 1128789/1128789 (100%) - 30983 spectra/s] 36.4s 002. 20240927_SW-KF_S1_sup_Slot2-37_1_8056_diatracer.mzBIN_calibrated 20.9 s [progress: 1050929/1050929 (100%) - 31829 spectra/s] 33.0s 003. 20240927_SW-KF_S1_total_Slot2-36_1_8055_diatracer.mzBIN_calibrated 21.7 s [progress: 1074800/1074800 (100%) - 31769 spectra/s] 33.8s 004. 20240927_SW-KF_S2_PLD_Slot2-41_1_8063_diatracer.mzBIN_calibrated 15.9 s [progress: 739669/739669 (100%) - 31728 spectra/s] 23.3s 005. 20240927_SW-KF_S2_sup_Slot2-40_1_8061_diatracer.mzBIN_calibrated 20.9 s [progress: 1077745/1077745 (100%) - 32043 spectra/s] 33.6s 006. 20240927_SW-KF_S2_total_Slot2-39_1_8060_diatracer.mzBIN_calibrated 22.2 s [progress: 1108952/1108952 (100%) - 31883 spectra/s] 34.8s Operating on slice 20 of 24: Fragment index slice generated in 7.98 s 001. 20240927_SW-KF_S1_PLD_Slot2-38_1_8058_diatracer.mzBIN_calibrated 33.6 s [progress: 1128789/1128789 (100%) - 30873 spectra/s] 36.6s 002. 20240927_SW-KF_S1_sup_Slot2-37_1_8056_diatracer.mzBIN_calibrated 21.5 s [progress: 1050929/1050929 (100%) - 31806 spectra/s] 33.0s 003. 20240927_SW-KF_S1_total_Slot2-36_1_8055_diatracer.mzBIN_calibrated 22.3 s [progress: 1074800/1074800 (100%) - 31604 spectra/s] 34.0s 004. 20240927_SW-KF_S2_PLD_Slot2-41_1_8063_diatracer.mzBIN_calibrated 15.0 s [progress: 739669/739669 (100%) - 32408 spectra/s] 22.8s 005. 20240927_SW-KF_S2_sup_Slot2-40_1_8061_diatracer.mzBIN_calibrated 22.0 s [progress: 1077745/1077745 (100%) - 31728 spectra/s] 34.0s 006. 20240927_SW-KF_S2_total_Slot2-39_1_8060_diatracer.mzBIN_calibrated 21.6 s [progress: 1108952/1108952 (100%) - 31866 spectra/s] 34.8s Operating on slice 21 of 24: Fragment index slice generated in 8.12 s 001. 20240927_SW-KF_S1_PLD_Slot2-38_1_8058_diatracer.mzBIN_calibrated 34.9 s [progress: 1128789/1128789 (100%) - 31006 spectra/s] 36.4s 002. 20240927_SW-KF_S1_sup_Slot2-37_1_8056_diatracer.mzBIN_calibrated 20.9 s [progress: 1050929/1050929 (100%) - 32205 spectra/s] 32.6s 003. 20240927_SW-KF_S1_total_Slot2-36_1_8055_diatracer.mzBIN_calibrated 21.3 s [progress: 1074800/1074800 (100%) - 31920 spectra/s] 33.7s 004. 20240927_SW-KF_S2_PLD_Slot2-41_1_8063_diatracer.mzBIN_calibrated 16.1 s [progress: 739669/739669 (100%) - 32480 spectra/s] 22.8s 005. 20240927_SW-KF_S2_sup_Slot2-40_1_8061_diatracer.mzBIN_calibrated 21.9 s [progress: 1077745/1077745 (100%) - 31735 spectra/s] 34.0s 006. 20240927_SW-KF_S2_total_Slot2-39_1_8060_diatracer.mzBIN_calibrated 22.1 s [progress: 1108952/1108952 (100%) - 31781 spectra/s] 34.9s Operating on slice 22 of 24: Fragment index slice generated in 8.18 s 001. 20240927_SW-KF_S1_PLD_Slot2-38_1_8058_diatracer.mzBIN_calibrated 34.6 s [progress: 1128789/1128789 (100%) - 31074 spectra/s] 36.3s 002. 20240927_SW-KF_S1_sup_Slot2-37_1_8056_diatracer.mzBIN_calibrated 22.1 s [progress: 1050929/1050929 (100%) - 31812 spectra/s] 33.0s 003. 20240927_SW-KF_S1_total_Slot2-36_1_8055_diatracer.mzBIN_calibrated 21.8 s [progress: 1074800/1074800 (100%) - 32013 spectra/s] 33.6s 004. 20240927_SW-KF_S2_PLD_Slot2-41_1_8063_diatracer.mzBIN_calibrated 15.9 s [progress: 739669/739669 (100%) - 32413 spectra/s] 22.8s 005. 20240927_SW-KF_S2_sup_Slot2-40_1_8061_diatracer.mzBIN_calibrated 21.1 s [progress: 1077745/1077745 (100%) - 30920 spectra/s] 34.9s 006. 20240927_SW-KF_S2_total_Slot2-39_1_8060_diatracer.mzBIN_calibrated 22.4 s [progress: 1108952/1108952 (100%) - 31976 spectra/s] 34.7s Operating on slice 23 of 24: Fragment index slice generated in 8.46 s 001. 20240927_SW-KF_S1_PLD_Slot2-38_1_8058_diatracer.mzBIN_calibrated 32.5 s [progress: 1128789/1128789 (100%) - 30756 spectra/s] 36.7s 002. 20240927_SW-KF_S1_sup_Slot2-37_1_8056_diatracer.mzBIN_calibrated 21.2 s [progress: 1050929/1050929 (100%) - 32165 spectra/s] 32.7s 003. 20240927_SW-KF_S1_total_Slot2-36_1_8055_diatracer.mzBIN_calibrated 21.3 s [progress: 1074800/1074800 (100%) - 32177 spectra/s] 33.4s 004. 20240927_SW-KF_S2_PLD_Slot2-41_1_8063_diatracer.mzBIN_calibrated 16.0 s [progress: 739669/739669 (100%) - 32586 spectra/s] 22.7s 005. 20240927_SW-KF_S2_sup_Slot2-40_1_8061_diatracer.mzBIN_calibrated 21.3 s [progress: 1077745/1077745 (100%) - 31802 spectra/s] 33.9s 006. 20240927_SW-KF_S2_total_Slot2-39_1_8060_diatracer.mzBIN_calibrated 22.1 s [progress: 1108952/1108952 (100%) - 31964 spectra/s] 34.7s Operating on slice 24 of 24: Fragment index slice generated in 8.28 s 001. 20240927_SW-KF_S1_PLD_Slot2-38_1_8058_diatracer.mzBIN_calibrated 32.6 s [progress: 1128789/1128789 (100%) - 31109 spectra/s] 36.3s | remapping alternative proteins and postprocessing 82.9 s 002. 20240927_SW-KF_S1_sup_Slot2-37_1_8056_diatracer.mzBIN_calibrated 21.6 s [progress: 1050929/1050929 (100%) - 31951 spectra/s] 32.9s | remapping alternative proteins and postprocessing 77.5 s 003. 20240927_SW-KF_S1_total_Slot2-36_1_8055_diatracer.mzBIN_calibrated 22.1 s [progress: 1074800/1074800 (100%) - 31787 spectra/s] 33.8s | remapping alternative proteins and postprocessing 81.1 s 004. 20240927_SW-KF_S2_PLD_Slot2-41_1_8063_diatracer.mzBIN_calibrated 16.0 s [progress: 739669/739669 (100%) - 32344 spectra/s] 22.9s | remapping alternative proteins and postprocessing 50.7 s 005. 20240927_SW-KF_S2_sup_Slot2-40_1_8061_diatracer.mzBIN_calibrated 21.3 s [progress: 1077745/1077745 (100%) - 31261 spectra/s] 34.5s | remapping alternative proteins and postprocessing 81.0 s 006. 20240927_SW-KF_S2_total_Slot2-39_1_8060_diatracer.mzBIN_calibrated 23.5 s [progress: 1108952/1108952 (100%) - 31668 spectra/s] 35.0s | remapping alternative proteins and postprocessing 82.2 s ***************************MAIN SEARCH DONE IN 158.835 MIN*************************** *******************************TOTAL TIME 195.875 MIN******************************** Process 'MSFragger' finished, exit code: 0 MSFragger move pepxml C:\Users\dubia\OneDrive\Desktop\FragPipe-jre-22.0\fragpipe\jre\bin\java.exe -cp C:\Users\dubia\OneDrive\Desktop\FragPipe-jre-22.0\fragpipe\lib\fragpipe-22.0.jar;/C:/Users/dubia/OneDrive/Desktop/FragPipe-jre-22.0/fragpipe/lib/commons-io-2.15.1.jar com.github.chhh.utils.FileMove --no-err D:\20240927_SW-KF\PLD_method\raw\20240927_SW-KF_S1_PLD_Slot2-38_1_8058_diatracer.pepXML D:\20240927_SW-KF\PLD_method\output\20240927_SW-KF_S1_PLD_Slot2-38_1_8058_diatracer.pepXML Process 'MSFragger move pepxml' finished, exit code: 0 MSFragger move pin C:\Users\dubia\OneDrive\Desktop\FragPipe-jre-22.0\fragpipe\jre\bin\java.exe -cp C:\Users\dubia\OneDrive\Desktop\FragPipe-jre-22.0\fragpipe\lib\fragpipe-22.0.jar;/C:/Users/dubia/OneDrive/Desktop/FragPipe-jre-22.0/fragpipe/lib/commons-io-2.15.1.jar com.github.chhh.utils.FileMove --no-err D:\20240927_SW-KF\PLD_method\raw\20240927_SW-KF_S1_PLD_Slot2-38_1_8058_diatracer.pin D:\20240927_SW-KF\PLD_method\output\20240927_SW-KF_S1_PLD_Slot2-38_1_8058_diatracer.pin Process 'MSFragger move pin' finished, exit code: 0 MSFragger move pepxml C:\Users\dubia\OneDrive\Desktop\FragPipe-jre-22.0\fragpipe\jre\bin\java.exe -cp C:\Users\dubia\OneDrive\Desktop\FragPipe-jre-22.0\fragpipe\lib\fragpipe-22.0.jar;/C:/Users/dubia/OneDrive/Desktop/FragPipe-jre-22.0/fragpipe/lib/commons-io-2.15.1.jar com.github.chhh.utils.FileMove --no-err D:\20240927_SW-KF\PLD_method\raw\20240927_SW-KF_S1_sup_Slot2-37_1_8056_diatracer.pepXML D:\20240927_SW-KF\PLD_method\output\20240927_SW-KF_S1_sup_Slot2-37_1_8056_diatracer.pepXML Process 'MSFragger move pepxml' finished, exit code: 0 MSFragger move pin C:\Users\dubia\OneDrive\Desktop\FragPipe-jre-22.0\fragpipe\jre\bin\java.exe -cp C:\Users\dubia\OneDrive\Desktop\FragPipe-jre-22.0\fragpipe\lib\fragpipe-22.0.jar;/C:/Users/dubia/OneDrive/Desktop/FragPipe-jre-22.0/fragpipe/lib/commons-io-2.15.1.jar com.github.chhh.utils.FileMove --no-err D:\20240927_SW-KF\PLD_method\raw\20240927_SW-KF_S1_sup_Slot2-37_1_8056_diatracer.pin D:\20240927_SW-KF\PLD_method\output\20240927_SW-KF_S1_sup_Slot2-37_1_8056_diatracer.pin Process 'MSFragger move pin' finished, exit code: 0 MSFragger move pepxml C:\Users\dubia\OneDrive\Desktop\FragPipe-jre-22.0\fragpipe\jre\bin\java.exe -cp C:\Users\dubia\OneDrive\Desktop\FragPipe-jre-22.0\fragpipe\lib\fragpipe-22.0.jar;/C:/Users/dubia/OneDrive/Desktop/FragPipe-jre-22.0/fragpipe/lib/commons-io-2.15.1.jar com.github.chhh.utils.FileMove --no-err D:\20240927_SW-KF\PLD_method\raw\20240927_SW-KF_S1_total_Slot2-36_1_8055_diatracer.pepXML D:\20240927_SW-KF\PLD_method\output\20240927_SW-KF_S1_total_Slot2-36_1_8055_diatracer.pepXML Process 'MSFragger move pepxml' finished, exit code: 0 MSFragger move pin C:\Users\dubia\OneDrive\Desktop\FragPipe-jre-22.0\fragpipe\jre\bin\java.exe -cp C:\Users\dubia\OneDrive\Desktop\FragPipe-jre-22.0\fragpipe\lib\fragpipe-22.0.jar;/C:/Users/dubia/OneDrive/Desktop/FragPipe-jre-22.0/fragpipe/lib/commons-io-2.15.1.jar com.github.chhh.utils.FileMove --no-err D:\20240927_SW-KF\PLD_method\raw\20240927_SW-KF_S1_total_Slot2-36_1_8055_diatracer.pin D:\20240927_SW-KF\PLD_method\output\20240927_SW-KF_S1_total_Slot2-36_1_8055_diatracer.pin Process 'MSFragger move pin' finished, exit code: 0 MSFragger move pepxml C:\Users\dubia\OneDrive\Desktop\FragPipe-jre-22.0\fragpipe\jre\bin\java.exe -cp C:\Users\dubia\OneDrive\Desktop\FragPipe-jre-22.0\fragpipe\lib\fragpipe-22.0.jar;/C:/Users/dubia/OneDrive/Desktop/FragPipe-jre-22.0/fragpipe/lib/commons-io-2.15.1.jar com.github.chhh.utils.FileMove --no-err D:\20240927_SW-KF\PLD_method\raw\20240927_SW-KF_S2_PLD_Slot2-41_1_8063_diatracer.pepXML D:\20240927_SW-KF\PLD_method\output\20240927_SW-KF_S2_PLD_Slot2-41_1_8063_diatracer.pepXML Process 'MSFragger move pepxml' finished, exit code: 0 MSFragger move pin C:\Users\dubia\OneDrive\Desktop\FragPipe-jre-22.0\fragpipe\jre\bin\java.exe -cp C:\Users\dubia\OneDrive\Desktop\FragPipe-jre-22.0\fragpipe\lib\fragpipe-22.0.jar;/C:/Users/dubia/OneDrive/Desktop/FragPipe-jre-22.0/fragpipe/lib/commons-io-2.15.1.jar com.github.chhh.utils.FileMove --no-err D:\20240927_SW-KF\PLD_method\raw\20240927_SW-KF_S2_PLD_Slot2-41_1_8063_diatracer.pin D:\20240927_SW-KF\PLD_method\output\20240927_SW-KF_S2_PLD_Slot2-41_1_8063_diatracer.pin Process 'MSFragger move pin' finished, exit code: 0 MSFragger move pepxml C:\Users\dubia\OneDrive\Desktop\FragPipe-jre-22.0\fragpipe\jre\bin\java.exe -cp C:\Users\dubia\OneDrive\Desktop\FragPipe-jre-22.0\fragpipe\lib\fragpipe-22.0.jar;/C:/Users/dubia/OneDrive/Desktop/FragPipe-jre-22.0/fragpipe/lib/commons-io-2.15.1.jar com.github.chhh.utils.FileMove --no-err D:\20240927_SW-KF\PLD_method\raw\20240927_SW-KF_S2_sup_Slot2-40_1_8061_diatracer.pepXML D:\20240927_SW-KF\PLD_method\output\20240927_SW-KF_S2_sup_Slot2-40_1_8061_diatracer.pepXML Process 'MSFragger move pepxml' finished, exit code: 0 MSFragger move pin C:\Users\dubia\OneDrive\Desktop\FragPipe-jre-22.0\fragpipe\jre\bin\java.exe -cp C:\Users\dubia\OneDrive\Desktop\FragPipe-jre-22.0\fragpipe\lib\fragpipe-22.0.jar;/C:/Users/dubia/OneDrive/Desktop/FragPipe-jre-22.0/fragpipe/lib/commons-io-2.15.1.jar com.github.chhh.utils.FileMove --no-err D:\20240927_SW-KF\PLD_method\raw\20240927_SW-KF_S2_sup_Slot2-40_1_8061_diatracer.pin D:\20240927_SW-KF\PLD_method\output\20240927_SW-KF_S2_sup_Slot2-40_1_8061_diatracer.pin Process 'MSFragger move pin' finished, exit code: 0 MSFragger move pepxml C:\Users\dubia\OneDrive\Desktop\FragPipe-jre-22.0\fragpipe\jre\bin\java.exe -cp C:\Users\dubia\OneDrive\Desktop\FragPipe-jre-22.0\fragpipe\lib\fragpipe-22.0.jar;/C:/Users/dubia/OneDrive/Desktop/FragPipe-jre-22.0/fragpipe/lib/commons-io-2.15.1.jar com.github.chhh.utils.FileMove --no-err D:\20240927_SW-KF\PLD_method\raw\20240927_SW-KF_S2_total_Slot2-39_1_8060_diatracer.pepXML D:\20240927_SW-KF\PLD_method\output\20240927_SW-KF_S2_total_Slot2-39_1_8060_diatracer.pepXML Process 'MSFragger move pepxml' finished, exit code: 0 MSFragger move pin C:\Users\dubia\OneDrive\Desktop\FragPipe-jre-22.0\fragpipe\jre\bin\java.exe -cp C:\Users\dubia\OneDrive\Desktop\FragPipe-jre-22.0\fragpipe\lib\fragpipe-22.0.jar;/C:/Users/dubia/OneDrive/Desktop/FragPipe-jre-22.0/fragpipe/lib/commons-io-2.15.1.jar com.github.chhh.utils.FileMove --no-err D:\20240927_SW-KF\PLD_method\raw\20240927_SW-KF_S2_total_Slot2-39_1_8060_diatracer.pin D:\20240927_SW-KF\PLD_method\output\20240927_SW-KF_S2_total_Slot2-39_1_8060_diatracer.pin Process 'MSFragger move pin' finished, exit code: 0 Percolator [Work dir: D:\20240927_SW-KF\PLD_method\output] C:\Users\dubia\OneDrive\Desktop\FragPipe-jre-22.0\fragpipe\tools\percolator_3_6_5\windows\percolator.exe --only-psms --no-terminate --post-processing-tdc --num-threads 23 --results-psms 20240927_SW-KF_S1_total_Slot2-36_1_8055_diatracer_percolator_target_psms.tsv --decoy-results-psms 20240927_SW-KF_S1_total_Slot2-36_1_8055_diatracer_percolator_decoy_psms.tsv --protein-decoy-pattern rev_ 20240927_SW-KF_S1_total_Slot2-36_1_8055_diatracer.pin Percolator version 3.06.5, Build Date Feb 8 2024 10:07:48 Copyright (c) 2006-9 University of Washington. All rights reserved. Written by Lukas Käll (lukall@u.washington.edu) in the Department of Genome Sciences at the University of Washington. Issued command: C:\Users\dubia\OneDrive\Desktop\FragPipe-jre-22.0\fragpipe\tools\percolator_3_6_5\windows\percolator.exe --only-psms --no-terminate --post-processing-tdc --num-threads 23 --results-psms 20240927_SW-KF_S1_total_Slot2-36_1_8055_diatracer_percolator_target_psms.tsv --decoy-results-psms 20240927_SW-KF_S1_total_Slot2-36_1_8055_diatracer_percolator_decoy_psms.tsv --protein-decoy-pattern rev_ 20240927_SW-KF_S1_total_Slot2-36_1_8055_diatracer.pin Started Fri Oct 4 05:37:37 2024 Hyperparameters: selectionFdr=0.01, Cpos=0, Cneg=0, maxNiter=10 Reading tab-delimited input from datafile 20240927_SW-KF_S1_total_Slot2-36_1_8055_diatracer.pin Features: rank abs_ppm isotope_error_negative isotope_error_0 isotope_error_1 isotope_error_2 isotope_error_3_more log10_evalue hyperscore delta_hyperscore matched_ion_num complementary_ions ion_series weighted_average_abs_fragment_ppm length_7 length_8 length_9_30 length_31 ntt nmc charge_1 charge_2 charge_3 charge_4 charge_5 charge_6 charge_7_or_more group_1 group_2 group_3 group_other 15.9949M 43.0422DE 87.03203DE Found 730288 PSMs Concatenated search input detected and --post-processing-tdc flag set. Applying target-decoy competition on Percolator scores. Train/test set contains 455630 positives and 274658 negatives, size ratio=1.6589 and pi0=1 Selecting Cpos by cross-validation. Selecting Cneg by cross-validation. Split 1: Selected feature 8 as initial direction. Could separate 90871 training set positives with q<0.01 in that direction. Split 2: Selected feature 8 as initial direction. Could separate 90862 training set positives with q<0.01 in that direction. Split 3: Selected feature 8 as initial direction. Could separate 90862 training set positives with q<0.01 in that direction. Found 136304 test set positives with q<0.01 in initial direction Reading in data and feature calculation took 19.3900 cpu seconds or 19 seconds wall clock time. ---Training with Cpos selected by cross validation, Cneg selected by cross validation, initial_fdr=0.01, fdr=0.01 Iteration 1: Estimated 153406 PSMs with q<0.01 Iteration 2: Estimated 158021 PSMs with q<0.01 Iteration 3: Estimated 159325 PSMs with q<0.01 Iteration 4: Estimated 159878 PSMs with q<0.01 Iteration 5: Estimated 159938 PSMs with q<0.01 Iteration 6: Estimated 159969 PSMs with q<0.01 Iteration 7: Estimated 159994 PSMs with q<0.01 Iteration 8: Estimated 159987 PSMs with q<0.01 Iteration 9: Estimated 159978 PSMs with q<0.01 Iteration 10: Estimated 159985 PSMs with q<0.01 Learned normalized SVM weights for the 3 cross-validation splits: Split1 Split2 Split3 FeatureName 0.0000 0.0000 0.0000 rank -0.4809 -0.5093 -0.7501 abs_ppm 0.0000 0.0000 0.0000 isotope_error_negative 0.0369 0.0266 0.0612 isotope_error_0 0.0261 0.0350 0.0207 isotope_error_1 -0.0649 -0.0633 -0.0844 isotope_error_2 0.0000 0.0000 0.0000 isotope_error_3_more -1.2074 -1.3505 -1.1989 log10_evalue 0.5761 0.4685 1.0356 hyperscore 0.5657 0.5962 0.9709 delta_hyperscore 0.6058 0.7102 1.1612 matched_ion_num 0.0119 -0.0676 -0.0315 complementary_ions 0.2588 0.2326 0.3839 ion_series -0.1912 -0.1762 -0.3147 weighted_average_abs_fragment_ppm -0.0657 -0.0678 -0.1001 length_7 -0.0418 -0.0558 -0.0831 length_8 0.0642 0.0739 0.1123 length_9_30 0.0425 0.0532 0.0672 length_31 0.0000 0.0000 0.0000 ntt -0.2619 -0.2764 -0.4260 nmc -0.2992 -0.3633 -0.4273 charge_1 -0.0535 -0.0433 -0.0842 charge_2 0.1145 0.1142 0.1653 charge_3 0.0696 0.0878 0.1098 charge_4 0.0000 0.0000 0.0000 charge_5 0.0000 0.0000 0.0000 charge_6 0.0000 0.0000 0.0000 charge_7_or_more 0.0000 0.0000 0.0000 group_1 0.0000 0.0000 0.0000 group_2 0.0000 0.0000 0.0000 group_3 0.0000 0.0000 0.0000 group_other -0.2301 -0.2359 -0.3096 15.9949M -1.1303 -1.1231 -1.7274 43.0422DE -1.4675 -1.4743 -2.0217 87.03203DE -2.7439 -2.7714 -3.2082 m0 Found 159711 test set PSMs with q<0.01. Selected best-scoring PSM per file+scan+expMass (target-decoy competition): 455630 target PSMs and 274658 decoy PSMs. Calculating q values. Final list yields 159715 target PSMs with q<0.01. Calculating posterior error probabilities (PEPs). Processing took 64.5620 cpu seconds or 65 seconds wall clock time. Process 'Percolator' finished, exit code: 0 Percolator [Work dir: D:\20240927_SW-KF\PLD_method\output] C:\Users\dubia\OneDrive\Desktop\FragPipe-jre-22.0\fragpipe\tools\percolator_3_6_5\windows\percolator.exe --only-psms --no-terminate --post-processing-tdc --num-threads 23 --results-psms 20240927_SW-KF_S2_sup_Slot2-40_1_8061_diatracer_percolator_target_psms.tsv --decoy-results-psms 20240927_SW-KF_S2_sup_Slot2-40_1_8061_diatracer_percolator_decoy_psms.tsv --protein-decoy-pattern rev_ 20240927_SW-KF_S2_sup_Slot2-40_1_8061_diatracer.pin Percolator version 3.06.5, Build Date Feb 8 2024 10:07:48 Copyright (c) 2006-9 University of Washington. All rights reserved. Written by Lukas Käll (lukall@u.washington.edu) in the Department of Genome Sciences at the University of Washington. Issued command: C:\Users\dubia\OneDrive\Desktop\FragPipe-jre-22.0\fragpipe\tools\percolator_3_6_5\windows\percolator.exe --only-psms --no-terminate --post-processing-tdc --num-threads 23 --results-psms 20240927_SW-KF_S2_sup_Slot2-40_1_8061_diatracer_percolator_target_psms.tsv --decoy-results-psms 20240927_SW-KF_S2_sup_Slot2-40_1_8061_diatracer_percolator_decoy_psms.tsv --protein-decoy-pattern rev_ 20240927_SW-KF_S2_sup_Slot2-40_1_8061_diatracer.pin Started Fri Oct 4 05:39:06 2024 Hyperparameters: selectionFdr=0.01, Cpos=0, Cneg=0, maxNiter=10 Reading tab-delimited input from datafile 20240927_SW-KF_S2_sup_Slot2-40_1_8061_diatracer.pin Features: rank abs_ppm isotope_error_negative isotope_error_0 isotope_error_1 isotope_error_2 isotope_error_3_more log10_evalue hyperscore delta_hyperscore matched_ion_num complementary_ions ion_series weighted_average_abs_fragment_ppm length_7 length_8 length_9_30 length_31 ntt nmc charge_1 charge_2 charge_3 charge_4 charge_5 charge_6 charge_7_or_more group_1 group_2 group_3 group_other 15.9949M 43.0422DE 87.03203DE Found 734048 PSMs Concatenated search input detected and --post-processing-tdc flag set. Applying target-decoy competition on Percolator scores. Train/test set contains 456372 positives and 277676 negatives, size ratio=1.64354 and pi0=1 Selecting Cpos by cross-validation. Selecting Cneg by cross-validation. Split 1: Selected feature 8 as initial direction. Could separate 89289 training set positives with q<0.01 in that direction. Split 2: Selected feature 8 as initial direction. Could separate 89163 training set positives with q<0.01 in that direction. Split 3: Selected feature 8 as initial direction. Could separate 89280 training set positives with q<0.01 in that direction. Found 133817 test set positives with q<0.01 in initial direction Reading in data and feature calculation took 17.4490 cpu seconds or 18 seconds wall clock time. ---Training with Cpos selected by cross validation, Cneg selected by cross validation, initial_fdr=0.01, fdr=0.01 Iteration 1: Estimated 149801 PSMs with q<0.01 Iteration 2: Estimated 154098 PSMs with q<0.01 Iteration 3: Estimated 155235 PSMs with q<0.01 Iteration 4: Estimated 155795 PSMs with q<0.01 Iteration 5: Estimated 156069 PSMs with q<0.01 Iteration 6: Estimated 156216 PSMs with q<0.01 Iteration 7: Estimated 156234 PSMs with q<0.01 Iteration 8: Estimated 156248 PSMs with q<0.01 Iteration 9: Estimated 156243 PSMs with q<0.01 Iteration 10: Estimated 156267 PSMs with q<0.01 Learned normalized SVM weights for the 3 cross-validation splits: Split1 Split2 Split3 FeatureName 0.0000 0.0000 0.0000 rank -0.5958 -0.4629 -0.7055 abs_ppm 0.0000 0.0000 0.0000 isotope_error_negative 0.0425 0.0266 0.0437 isotope_error_0 0.0426 0.0209 0.0427 isotope_error_1 -0.0874 -0.0488 -0.0887 isotope_error_2 0.0000 0.0000 0.0000 isotope_error_3_more -1.3834 -1.2410 -1.5117 log10_evalue 0.8927 0.6810 1.1908 hyperscore 0.7517 0.6039 0.9144 delta_hyperscore 0.6052 0.4600 0.7870 matched_ion_num -0.0181 -0.0096 -0.0088 complementary_ions 0.1820 0.1378 0.2703 ion_series -0.2104 -0.1516 -0.2672 weighted_average_abs_fragment_ppm -0.1122 -0.0788 -0.0979 length_7 -0.0382 -0.0405 -0.0663 length_8 0.0820 0.0670 0.0966 length_9_30 0.0711 0.0543 0.0634 length_31 0.0000 0.0000 0.0000 ntt -0.3545 -0.2727 -0.4383 nmc -0.3553 -0.3359 -0.5210 charge_1 -0.0738 -0.0494 -0.0788 charge_2 0.1544 0.1341 0.1970 charge_3 0.0849 0.0644 0.1221 charge_4 0.0000 0.0000 0.0000 charge_5 0.0000 0.0000 0.0000 charge_6 0.0000 0.0000 0.0000 charge_7_or_more 0.0000 0.0000 0.0000 group_1 0.0000 0.0000 0.0000 group_2 0.0000 0.0000 0.0000 group_3 0.0000 0.0000 0.0000 group_other -0.1802 -0.1803 -0.2468 15.9949M -1.2303 -0.9404 -1.4258 43.0422DE -1.7201 -1.6844 -2.0785 87.03203DE -2.8027 -2.7910 -3.0276 m0 Found 156101 test set PSMs with q<0.01. Selected best-scoring PSM per file+scan+expMass (target-decoy competition): 456372 target PSMs and 277676 decoy PSMs. Calculating q values. Final list yields 156109 target PSMs with q<0.01. Calculating posterior error probabilities (PEPs). Processing took 65.6660 cpu seconds or 65 seconds wall clock time. Process 'Percolator' finished, exit code: 0 Percolator [Work dir: D:\20240927_SW-KF\PLD_method\output] C:\Users\dubia\OneDrive\Desktop\FragPipe-jre-22.0\fragpipe\tools\percolator_3_6_5\windows\percolator.exe --only-psms --no-terminate --post-processing-tdc --num-threads 23 --results-psms 20240927_SW-KF_S1_PLD_Slot2-38_1_8058_diatracer_percolator_target_psms.tsv --decoy-results-psms 20240927_SW-KF_S1_PLD_Slot2-38_1_8058_diatracer_percolator_decoy_psms.tsv --protein-decoy-pattern rev_ 20240927_SW-KF_S1_PLD_Slot2-38_1_8058_diatracer.pin Percolator version 3.06.5, Build Date Feb 8 2024 10:07:48 Copyright (c) 2006-9 University of Washington. All rights reserved. Written by Lukas Käll (lukall@u.washington.edu) in the Department of Genome Sciences at the University of Washington. Issued command: C:\Users\dubia\OneDrive\Desktop\FragPipe-jre-22.0\fragpipe\tools\percolator_3_6_5\windows\percolator.exe --only-psms --no-terminate --post-processing-tdc --num-threads 23 --results-psms 20240927_SW-KF_S1_PLD_Slot2-38_1_8058_diatracer_percolator_target_psms.tsv --decoy-results-psms 20240927_SW-KF_S1_PLD_Slot2-38_1_8058_diatracer_percolator_decoy_psms.tsv --protein-decoy-pattern rev_ 20240927_SW-KF_S1_PLD_Slot2-38_1_8058_diatracer.pin Started Fri Oct 4 05:40:35 2024 Hyperparameters: selectionFdr=0.01, Cpos=0, Cneg=0, maxNiter=10 Reading tab-delimited input from datafile 20240927_SW-KF_S1_PLD_Slot2-38_1_8058_diatracer.pin Features: rank abs_ppm isotope_error_negative isotope_error_0 isotope_error_1 isotope_error_2 isotope_error_3_more log10_evalue hyperscore delta_hyperscore matched_ion_num complementary_ions ion_series weighted_average_abs_fragment_ppm length_7 length_8 length_9_30 length_31 ntt nmc charge_1 charge_2 charge_3 charge_4 charge_5 charge_6 charge_7_or_more group_1 group_2 group_3 group_other 15.9949M 43.0422DE 87.03203DE Found 735596 PSMs Concatenated search input detected and --post-processing-tdc flag set. Applying target-decoy competition on Percolator scores. Train/test set contains 404696 positives and 330900 negatives, size ratio=1.22302 and pi0=1 Selecting Cpos by cross-validation. Selecting Cneg by cross-validation. Split 1: Selected feature 8 as initial direction. Could separate 35268 training set positives with q<0.01 in that direction. Split 2: Selected feature 8 as initial direction. Could separate 35409 training set positives with q<0.01 in that direction. Split 3: Selected feature 8 as initial direction. Could separate 35476 training set positives with q<0.01 in that direction. Found 53102 test set positives with q<0.01 in initial direction Reading in data and feature calculation took 18.3720 cpu seconds or 18 seconds wall clock time. ---Training with Cpos selected by cross validation, Cneg selected by cross validation, initial_fdr=0.01, fdr=0.01 Iteration 1: Estimated 60789 PSMs with q<0.01 Iteration 2: Estimated 62335 PSMs with q<0.01 Iteration 3: Estimated 62725 PSMs with q<0.01 Iteration 4: Estimated 62817 PSMs with q<0.01 Iteration 5: Estimated 62905 PSMs with q<0.01 Iteration 6: Estimated 62946 PSMs with q<0.01 Iteration 7: Estimated 62973 PSMs with q<0.01 Iteration 8: Estimated 62979 PSMs with q<0.01 Iteration 9: Estimated 62973 PSMs with q<0.01 Iteration 10: Estimated 62986 PSMs with q<0.01 Learned normalized SVM weights for the 3 cross-validation splits: Split1 Split2 Split3 FeatureName 0.0000 0.0000 0.0000 rank -0.5182 -0.5382 -0.5629 abs_ppm 0.0000 0.0000 0.0000 isotope_error_negative 0.0433 0.0270 0.0365 isotope_error_0 0.0116 0.0430 0.0460 isotope_error_1 -0.0563 -0.0715 -0.0843 isotope_error_2 0.0000 0.0000 0.0000 isotope_error_3_more -1.0365 -0.9255 -1.2997 log10_evalue 1.2836 1.4894 1.4345 hyperscore 0.4337 0.4511 0.4597 delta_hyperscore -0.1151 -0.1697 -0.1348 matched_ion_num -0.1992 -0.1763 -0.2376 complementary_ions 0.1985 0.2009 0.1971 ion_series -0.1713 -0.1610 -0.1748 weighted_average_abs_fragment_ppm -0.1735 -0.1074 -0.0734 length_7 0.0373 -0.0136 -0.0544 length_8 0.0809 0.0847 0.0899 length_9_30 -0.0023 -0.0278 -0.0069 length_31 0.0000 0.0000 0.0000 ntt -0.4113 -0.4151 -0.4303 nmc -0.4155 -0.4027 -0.4278 charge_1 -0.0580 -0.0679 -0.0793 charge_2 0.2041 0.2134 0.2274 charge_3 0.1178 0.1094 0.1293 charge_4 0.0000 0.0000 0.0000 charge_5 0.0000 0.0000 0.0000 charge_6 0.0000 0.0000 0.0000 charge_7_or_more 0.0000 0.0000 0.0000 group_1 0.0000 0.0000 0.0000 group_2 0.0000 0.0000 0.0000 group_3 0.0000 0.0000 0.0000 group_other 0.0827 0.1046 0.1039 15.9949M -1.1879 -1.2278 -1.2632 43.0422DE -1.3353 -1.4464 -1.4062 87.03203DE -4.2688 -4.4672 -4.2823 m0 Found 62811 test set PSMs with q<0.01. Selected best-scoring PSM per file+scan+expMass (target-decoy competition): 404696 target PSMs and 330900 decoy PSMs. Calculating q values. Final list yields 62825 target PSMs with q<0.01. Calculating posterior error probabilities (PEPs). Processing took 52.4820 cpu seconds or 53 seconds wall clock time. Process 'Percolator' finished, exit code: 0 Percolator [Work dir: D:\20240927_SW-KF\PLD_method\output] C:\Users\dubia\OneDrive\Desktop\FragPipe-jre-22.0\fragpipe\tools\percolator_3_6_5\windows\percolator.exe --only-psms --no-terminate --post-processing-tdc --num-threads 23 --results-psms 20240927_SW-KF_S1_sup_Slot2-37_1_8056_diatracer_percolator_target_psms.tsv --decoy-results-psms 20240927_SW-KF_S1_sup_Slot2-37_1_8056_diatracer_percolator_decoy_psms.tsv --protein-decoy-pattern rev_ 20240927_SW-KF_S1_sup_Slot2-37_1_8056_diatracer.pin Percolator version 3.06.5, Build Date Feb 8 2024 10:07:48 Copyright (c) 2006-9 University of Washington. All rights reserved. Written by Lukas Käll (lukall@u.washington.edu) in the Department of Genome Sciences at the University of Washington. Issued command: C:\Users\dubia\OneDrive\Desktop\FragPipe-jre-22.0\fragpipe\tools\percolator_3_6_5\windows\percolator.exe --only-psms --no-terminate --post-processing-tdc --num-threads 23 --results-psms 20240927_SW-KF_S1_sup_Slot2-37_1_8056_diatracer_percolator_target_psms.tsv --decoy-results-psms 20240927_SW-KF_S1_sup_Slot2-37_1_8056_diatracer_percolator_decoy_psms.tsv --protein-decoy-pattern rev_ 20240927_SW-KF_S1_sup_Slot2-37_1_8056_diatracer.pin Started Fri Oct 4 05:41:51 2024 Hyperparameters: selectionFdr=0.01, Cpos=0, Cneg=0, maxNiter=10 Reading tab-delimited input from datafile 20240927_SW-KF_S1_sup_Slot2-37_1_8056_diatracer.pin Features: rank abs_ppm isotope_error_negative isotope_error_0 isotope_error_1 isotope_error_2 isotope_error_3_more log10_evalue hyperscore delta_hyperscore matched_ion_num complementary_ions ion_series weighted_average_abs_fragment_ppm length_7 length_8 length_9_30 length_31 ntt nmc charge_1 charge_2 charge_3 charge_4 charge_5 charge_6 charge_7_or_more group_1 group_2 group_3 group_other 15.9949M 43.0422DE 87.03203DE Found 715086 PSMs Concatenated search input detected and --post-processing-tdc flag set. Applying target-decoy competition on Percolator scores. Train/test set contains 444578 positives and 270508 negatives, size ratio=1.64349 and pi0=1 Selecting Cpos by cross-validation. Selecting Cneg by cross-validation. Split 1: Selected feature 8 as initial direction. Could separate 86946 training set positives with q<0.01 in that direction. Split 2: Selected feature 8 as initial direction. Could separate 86817 training set positives with q<0.01 in that direction. Split 3: Selected feature 8 as initial direction. Could separate 86704 training set positives with q<0.01 in that direction. Found 130171 test set positives with q<0.01 in initial direction Reading in data and feature calculation took 19.1780 cpu seconds or 20 seconds wall clock time. ---Training with Cpos selected by cross validation, Cneg selected by cross validation, initial_fdr=0.01, fdr=0.01 Iteration 1: Estimated 146277 PSMs with q<0.01 Iteration 2: Estimated 150104 PSMs with q<0.01 Iteration 3: Estimated 151302 PSMs with q<0.01 Iteration 4: Estimated 151769 PSMs with q<0.01 Iteration 5: Estimated 152066 PSMs with q<0.01 Iteration 6: Estimated 152150 PSMs with q<0.01 Iteration 7: Estimated 152306 PSMs with q<0.01 Iteration 8: Estimated 152431 PSMs with q<0.01 Iteration 9: Estimated 152445 PSMs with q<0.01 Iteration 10: Estimated 152415 PSMs with q<0.01 Learned normalized SVM weights for the 3 cross-validation splits: Split1 Split2 Split3 FeatureName 0.0000 0.0000 0.0000 rank -0.7223 -0.7517 -0.7354 abs_ppm 0.0000 0.0000 0.0000 isotope_error_negative 0.0528 0.0421 0.0501 isotope_error_0 0.0390 0.0405 0.0394 isotope_error_1 -0.0946 -0.0849 -0.0921 isotope_error_2 0.0000 0.0000 0.0000 isotope_error_3_more -1.5427 -1.5366 -1.6341 log10_evalue 0.7891 0.7983 0.5880 hyperscore 0.9061 0.9645 0.8867 delta_hyperscore 1.0589 1.0679 1.1908 matched_ion_num -0.0290 0.0122 -0.1108 complementary_ions 0.2658 0.3371 0.2594 ion_series -0.3470 -0.3501 -0.3128 weighted_average_abs_fragment_ppm -0.1559 -0.2054 -0.1483 length_7 -0.0650 -0.0591 -0.0520 length_8 0.1269 0.1503 0.1151 length_9_30 0.0952 0.1107 0.0826 length_31 0.0000 0.0000 0.0000 ntt -0.4132 -0.4220 -0.3947 nmc -0.5850 -0.4471 -0.5719 charge_1 -0.0540 -0.0707 -0.0609 charge_2 0.1995 0.1671 0.2035 charge_3 0.0957 0.0995 0.0938 charge_4 0.0000 0.0000 0.0000 charge_5 0.0000 0.0000 0.0000 charge_6 0.0000 0.0000 0.0000 charge_7_or_more 0.0000 0.0000 0.0000 group_1 0.0000 0.0000 0.0000 group_2 0.0000 0.0000 0.0000 group_3 0.0000 0.0000 0.0000 group_other -0.2784 -0.2833 -0.2440 15.9949M -1.5454 -1.6252 -1.4305 43.0422DE -1.7124 -1.9150 -1.6912 87.03203DE -2.9101 -3.1252 -2.7885 m0 Found 152171 test set PSMs with q<0.01. Selected best-scoring PSM per file+scan+expMass (target-decoy competition): 444578 target PSMs and 270508 decoy PSMs. Calculating q values. Final list yields 152183 target PSMs with q<0.01. Calculating posterior error probabilities (PEPs). Processing took 62.4250 cpu seconds or 62 seconds wall clock time. Process 'Percolator' finished, exit code: 0 Percolator [Work dir: D:\20240927_SW-KF\PLD_method\output] C:\Users\dubia\OneDrive\Desktop\FragPipe-jre-22.0\fragpipe\tools\percolator_3_6_5\windows\percolator.exe --only-psms --no-terminate --post-processing-tdc --num-threads 23 --results-psms 20240927_SW-KF_S2_total_Slot2-39_1_8060_diatracer_percolator_target_psms.tsv --decoy-results-psms 20240927_SW-KF_S2_total_Slot2-39_1_8060_diatracer_percolator_decoy_psms.tsv --protein-decoy-pattern rev_ 20240927_SW-KF_S2_total_Slot2-39_1_8060_diatracer.pin Percolator version 3.06.5, Build Date Feb 8 2024 10:07:48 Copyright (c) 2006-9 University of Washington. All rights reserved. Written by Lukas Käll (lukall@u.washington.edu) in the Department of Genome Sciences at the University of Washington. Issued command: C:\Users\dubia\OneDrive\Desktop\FragPipe-jre-22.0\fragpipe\tools\percolator_3_6_5\windows\percolator.exe --only-psms --no-terminate --post-processing-tdc --num-threads 23 --results-psms 20240927_SW-KF_S2_total_Slot2-39_1_8060_diatracer_percolator_target_psms.tsv --decoy-results-psms 20240927_SW-KF_S2_total_Slot2-39_1_8060_diatracer_percolator_decoy_psms.tsv --protein-decoy-pattern rev_ 20240927_SW-KF_S2_total_Slot2-39_1_8060_diatracer.pin Started Fri Oct 4 05:43:18 2024 Hyperparameters: selectionFdr=0.01, Cpos=0, Cneg=0, maxNiter=10 Reading tab-delimited input from datafile 20240927_SW-KF_S2_total_Slot2-39_1_8060_diatracer.pin Features: rank abs_ppm isotope_error_negative isotope_error_0 isotope_error_1 isotope_error_2 isotope_error_3_more log10_evalue hyperscore delta_hyperscore matched_ion_num complementary_ions ion_series weighted_average_abs_fragment_ppm length_7 length_8 length_9_30 length_31 ntt nmc charge_1 charge_2 charge_3 charge_4 charge_5 charge_6 charge_7_or_more group_1 group_2 group_3 group_other 15.9949M 43.0422DE 87.03203DE Found 758845 PSMs Concatenated search input detected and --post-processing-tdc flag set. Applying target-decoy competition on Percolator scores. Train/test set contains 472022 positives and 286823 negatives, size ratio=1.64569 and pi0=1 Selecting Cpos by cross-validation. Selecting Cneg by cross-validation. Split 1: Selected feature 8 as initial direction. Could separate 93130 training set positives with q<0.01 in that direction. Split 2: Selected feature 8 as initial direction. Could separate 93184 training set positives with q<0.01 in that direction. Split 3: Selected feature 8 as initial direction. Could separate 93284 training set positives with q<0.01 in that direction. Found 139834 test set positives with q<0.01 in initial direction Reading in data and feature calculation took 18.8400 cpu seconds or 19 seconds wall clock time. ---Training with Cpos selected by cross validation, Cneg selected by cross validation, initial_fdr=0.01, fdr=0.01 Iteration 1: Estimated 156675 PSMs with q<0.01 Iteration 2: Estimated 161177 PSMs with q<0.01 Iteration 3: Estimated 162884 PSMs with q<0.01 Iteration 4: Estimated 163710 PSMs with q<0.01 Iteration 5: Estimated 164025 PSMs with q<0.01 Iteration 6: Estimated 164162 PSMs with q<0.01 Iteration 7: Estimated 164251 PSMs with q<0.01 Iteration 8: Estimated 164334 PSMs with q<0.01 Iteration 9: Estimated 164333 PSMs with q<0.01 Iteration 10: Estimated 164359 PSMs with q<0.01 Learned normalized SVM weights for the 3 cross-validation splits: Split1 Split2 Split3 FeatureName 0.0000 0.0000 0.0000 rank -0.7564 -0.6127 -0.5001 abs_ppm 0.0000 0.0000 0.0000 isotope_error_negative 0.0397 0.0221 0.0153 isotope_error_0 0.0339 0.0286 0.0338 isotope_error_1 -0.0756 -0.0520 -0.0503 isotope_error_2 0.0000 0.0000 0.0000 isotope_error_3_more -1.3287 -1.2398 -1.2773 log10_evalue 0.7925 0.6342 0.5341 hyperscore 0.9822 0.7651 0.6007 delta_hyperscore 1.1622 0.9149 0.5941 matched_ion_num 0.0488 0.0837 -0.0177 complementary_ions 0.3004 0.1937 0.1352 ion_series -0.2931 -0.2231 -0.1610 weighted_average_abs_fragment_ppm -0.1411 -0.1235 -0.1197 length_7 -0.0625 -0.0271 -0.0219 length_8 0.1145 0.0847 0.0782 length_9_30 0.0928 0.0573 0.0578 length_31 0.0000 0.0000 0.0000 ntt -0.4170 -0.3610 -0.2473 nmc -0.4595 -0.2753 -0.3897 charge_1 -0.0757 -0.0913 -0.0473 charge_2 0.1879 0.1284 0.1327 charge_3 0.0930 0.1096 0.0936 charge_4 0.0000 0.0000 0.0000 charge_5 0.0000 0.0000 0.0000 charge_6 0.0000 0.0000 0.0000 charge_7_or_more 0.0000 0.0000 0.0000 group_1 0.0000 0.0000 0.0000 group_2 0.0000 0.0000 0.0000 group_3 0.0000 0.0000 0.0000 group_other -0.3330 -0.2291 -0.2282 15.9949M -1.6058 -1.2627 -1.0451 43.0422DE -1.8149 -1.6153 -1.2980 87.03203DE -2.9999 -2.7296 -2.6010 m0 Found 164057 test set PSMs with q<0.01. Selected best-scoring PSM per file+scan+expMass (target-decoy competition): 472022 target PSMs and 286823 decoy PSMs. Calculating q values. Final list yields 164074 target PSMs with q<0.01. Calculating posterior error probabilities (PEPs). Processing took 67.6830 cpu seconds or 68 seconds wall clock time. Process 'Percolator' finished, exit code: 0 Percolator [Work dir: D:\20240927_SW-KF\PLD_method\output] C:\Users\dubia\OneDrive\Desktop\FragPipe-jre-22.0\fragpipe\tools\percolator_3_6_5\windows\percolator.exe --only-psms --no-terminate --post-processing-tdc --num-threads 23 --results-psms 20240927_SW-KF_S2_PLD_Slot2-41_1_8063_diatracer_percolator_target_psms.tsv --decoy-results-psms 20240927_SW-KF_S2_PLD_Slot2-41_1_8063_diatracer_percolator_decoy_psms.tsv --protein-decoy-pattern rev_ 20240927_SW-KF_S2_PLD_Slot2-41_1_8063_diatracer.pin Percolator version 3.06.5, Build Date Feb 8 2024 10:07:48 Copyright (c) 2006-9 University of Washington. All rights reserved. Written by Lukas Käll (lukall@u.washington.edu) in the Department of Genome Sciences at the University of Washington. Issued command: C:\Users\dubia\OneDrive\Desktop\FragPipe-jre-22.0\fragpipe\tools\percolator_3_6_5\windows\percolator.exe --only-psms --no-terminate --post-processing-tdc --num-threads 23 --results-psms 20240927_SW-KF_S2_PLD_Slot2-41_1_8063_diatracer_percolator_target_psms.tsv --decoy-results-psms 20240927_SW-KF_S2_PLD_Slot2-41_1_8063_diatracer_percolator_decoy_psms.tsv --protein-decoy-pattern rev_ 20240927_SW-KF_S2_PLD_Slot2-41_1_8063_diatracer.pin Started Fri Oct 4 05:44:50 2024 Hyperparameters: selectionFdr=0.01, Cpos=0, Cneg=0, maxNiter=10 Reading tab-delimited input from datafile 20240927_SW-KF_S2_PLD_Slot2-41_1_8063_diatracer.pin Features: rank abs_ppm isotope_error_negative isotope_error_0 isotope_error_1 isotope_error_2 isotope_error_3_more log10_evalue hyperscore delta_hyperscore matched_ion_num complementary_ions ion_series weighted_average_abs_fragment_ppm length_7 length_8 length_9_30 length_31 ntt nmc charge_1 charge_2 charge_3 charge_4 charge_5 charge_6 charge_7_or_more group_1 group_2 group_3 group_other 15.9949M 43.0422DE 87.03203DE Found 456982 PSMs Concatenated search input detected and --post-processing-tdc flag set. Applying target-decoy competition on Percolator scores. Train/test set contains 248706 positives and 208276 negatives, size ratio=1.19412 and pi0=1 Selecting Cpos by cross-validation. Selecting Cneg by cross-validation. Split 1: Selected feature 8 as initial direction. Could separate 17373 training set positives with q<0.01 in that direction. Split 2: Selected feature 8 as initial direction. Could separate 17479 training set positives with q<0.01 in that direction. Split 3: Selected feature 8 as initial direction. Could separate 17280 training set positives with q<0.01 in that direction. Found 25991 test set positives with q<0.01 in initial direction Reading in data and feature calculation took 10.0280 cpu seconds or 10 seconds wall clock time. ---Training with Cpos selected by cross validation, Cneg selected by cross validation, initial_fdr=0.01, fdr=0.01 Iteration 1: Estimated 30417 PSMs with q<0.01 Iteration 2: Estimated 31360 PSMs with q<0.01 Iteration 3: Estimated 31601 PSMs with q<0.01 Iteration 4: Estimated 31777 PSMs with q<0.01 Iteration 5: Estimated 31848 PSMs with q<0.01 Iteration 6: Estimated 31890 PSMs with q<0.01 Iteration 7: Estimated 31861 PSMs with q<0.01 Iteration 8: Estimated 31933 PSMs with q<0.01 Iteration 9: Estimated 31943 PSMs with q<0.01 Iteration 10: Estimated 31960 PSMs with q<0.01 Learned normalized SVM weights for the 3 cross-validation splits: Split1 Split2 Split3 FeatureName 0.0000 0.0000 0.0000 rank -0.5880 -0.5292 -0.6351 abs_ppm 0.0000 0.0000 0.0000 isotope_error_negative 0.0484 0.0577 0.0418 isotope_error_0 0.0522 0.0312 0.0388 isotope_error_1 -0.1033 -0.0915 -0.0828 isotope_error_2 0.0000 0.0000 0.0000 isotope_error_3_more -1.5501 -1.3793 -1.4696 log10_evalue 1.2825 1.0450 1.0725 hyperscore 0.3547 0.3449 0.3926 delta_hyperscore -0.3335 -0.1486 -0.0729 matched_ion_num -0.2324 -0.2351 -0.3103 complementary_ions 0.2482 0.1862 0.2179 ion_series -0.1793 -0.1397 -0.1742 weighted_average_abs_fragment_ppm -0.0680 -0.0191 -0.0249 length_7 -0.0016 -0.0405 -0.0495 length_8 0.0365 0.0387 0.0486 length_9_30 0.0396 0.0287 0.0335 length_31 0.0000 0.0000 0.0000 ntt -0.6231 -0.5914 -0.6085 nmc -0.3474 -0.4938 -0.5451 charge_1 -0.0747 -0.0336 -0.0324 charge_2 0.2130 0.2103 0.2287 charge_3 0.0378 0.0746 0.0789 charge_4 0.0000 0.0000 0.0000 charge_5 0.0000 0.0000 0.0000 charge_6 0.0000 0.0000 0.0000 charge_7_or_more 0.0000 0.0000 0.0000 group_1 0.0000 0.0000 0.0000 group_2 0.0000 0.0000 0.0000 group_3 0.0000 0.0000 0.0000 group_other 0.0755 0.0955 0.0737 15.9949M -1.6082 -1.2678 -1.3450 43.0422DE -2.3159 -1.3694 -2.0046 87.03203DE -6.2014 -4.9128 -5.6070 m0 Found 31835 test set PSMs with q<0.01. Selected best-scoring PSM per file+scan+expMass (target-decoy competition): 248706 target PSMs and 208276 decoy PSMs. Calculating q values. Final list yields 31838 target PSMs with q<0.01. Calculating posterior error probabilities (PEPs). Processing took 30.3270 cpu seconds or 31 seconds wall clock time. Process 'Percolator' finished, exit code: 0 Percolator: Convert to pepxml [Work dir: D:\20240927_SW-KF\PLD_method\output] C:\Users\dubia\OneDrive\Desktop\FragPipe-jre-22.0\fragpipe\jre\bin\java.exe -cp C:\Users\dubia\OneDrive\Desktop\FragPipe-jre-22.0\fragpipe\lib/* com.dmtavt.fragpipe.tools.percolator.PercolatorOutputToPepXML 20240927_SW-KF_S1_total_Slot2-36_1_8055_diatracer.pin 20240927_SW-KF_S1_total_Slot2-36_1_8055_diatracer 20240927_SW-KF_S1_total_Slot2-36_1_8055_diatracer_percolator_target_psms.tsv 20240927_SW-KF_S1_total_Slot2-36_1_8055_diatracer_percolator_decoy_psms.tsv interact-20240927_SW-KF_S1_total_Slot2-36_1_8055_diatracer DDA 0.5 D:\20240927_SW-KF\PLD_method\raw\20240927_SW-KF_S1_total_Slot2-36_1_8055_diatracer_calibrated.mzML Process 'Percolator: Convert to pepxml' finished, exit code: 0 Percolator: Delete temp C:\Users\dubia\OneDrive\Desktop\FragPipe-jre-22.0\fragpipe\jre\bin\java.exe -cp C:\Users\dubia\OneDrive\Desktop\FragPipe-jre-22.0\fragpipe\lib\fragpipe-22.0.jar com.github.chhh.utils.FileDelete D:\20240927_SW-KF\PLD_method\output\20240927_SW-KF_S1_total_Slot2-36_1_8055_diatracer_percolator_target_psms.tsv Process 'Percolator: Delete temp' finished, exit code: 0 Percolator: Delete temp C:\Users\dubia\OneDrive\Desktop\FragPipe-jre-22.0\fragpipe\jre\bin\java.exe -cp C:\Users\dubia\OneDrive\Desktop\FragPipe-jre-22.0\fragpipe\lib\fragpipe-22.0.jar com.github.chhh.utils.FileDelete D:\20240927_SW-KF\PLD_method\output\20240927_SW-KF_S1_total_Slot2-36_1_8055_diatracer_percolator_decoy_psms.tsv Process 'Percolator: Delete temp' finished, exit code: 0 Percolator: Convert to pepxml [Work dir: D:\20240927_SW-KF\PLD_method\output] C:\Users\dubia\OneDrive\Desktop\FragPipe-jre-22.0\fragpipe\jre\bin\java.exe -cp C:\Users\dubia\OneDrive\Desktop\FragPipe-jre-22.0\fragpipe\lib/* com.dmtavt.fragpipe.tools.percolator.PercolatorOutputToPepXML 20240927_SW-KF_S2_sup_Slot2-40_1_8061_diatracer.pin 20240927_SW-KF_S2_sup_Slot2-40_1_8061_diatracer 20240927_SW-KF_S2_sup_Slot2-40_1_8061_diatracer_percolator_target_psms.tsv 20240927_SW-KF_S2_sup_Slot2-40_1_8061_diatracer_percolator_decoy_psms.tsv interact-20240927_SW-KF_S2_sup_Slot2-40_1_8061_diatracer DDA 0.5 D:\20240927_SW-KF\PLD_method\raw\20240927_SW-KF_S2_sup_Slot2-40_1_8061_diatracer_calibrated.mzML Process 'Percolator: Convert to pepxml' finished, exit code: 0 Percolator: Delete temp C:\Users\dubia\OneDrive\Desktop\FragPipe-jre-22.0\fragpipe\jre\bin\java.exe -cp C:\Users\dubia\OneDrive\Desktop\FragPipe-jre-22.0\fragpipe\lib\fragpipe-22.0.jar com.github.chhh.utils.FileDelete D:\20240927_SW-KF\PLD_method\output\20240927_SW-KF_S2_sup_Slot2-40_1_8061_diatracer_percolator_target_psms.tsv Process 'Percolator: Delete temp' finished, exit code: 0 Percolator: Delete temp C:\Users\dubia\OneDrive\Desktop\FragPipe-jre-22.0\fragpipe\jre\bin\java.exe -cp C:\Users\dubia\OneDrive\Desktop\FragPipe-jre-22.0\fragpipe\lib\fragpipe-22.0.jar com.github.chhh.utils.FileDelete D:\20240927_SW-KF\PLD_method\output\20240927_SW-KF_S2_sup_Slot2-40_1_8061_diatracer_percolator_decoy_psms.tsv Process 'Percolator: Delete temp' finished, exit code: 0 Percolator: Convert to pepxml [Work dir: D:\20240927_SW-KF\PLD_method\output] C:\Users\dubia\OneDrive\Desktop\FragPipe-jre-22.0\fragpipe\jre\bin\java.exe -cp C:\Users\dubia\OneDrive\Desktop\FragPipe-jre-22.0\fragpipe\lib/* com.dmtavt.fragpipe.tools.percolator.PercolatorOutputToPepXML 20240927_SW-KF_S1_PLD_Slot2-38_1_8058_diatracer.pin 20240927_SW-KF_S1_PLD_Slot2-38_1_8058_diatracer 20240927_SW-KF_S1_PLD_Slot2-38_1_8058_diatracer_percolator_target_psms.tsv 20240927_SW-KF_S1_PLD_Slot2-38_1_8058_diatracer_percolator_decoy_psms.tsv interact-20240927_SW-KF_S1_PLD_Slot2-38_1_8058_diatracer DDA 0.5 D:\20240927_SW-KF\PLD_method\raw\20240927_SW-KF_S1_PLD_Slot2-38_1_8058_diatracer_calibrated.mzML Process 'Percolator: Convert to pepxml' finished, exit code: 0 Percolator: Delete temp C:\Users\dubia\OneDrive\Desktop\FragPipe-jre-22.0\fragpipe\jre\bin\java.exe -cp C:\Users\dubia\OneDrive\Desktop\FragPipe-jre-22.0\fragpipe\lib\fragpipe-22.0.jar com.github.chhh.utils.FileDelete D:\20240927_SW-KF\PLD_method\output\20240927_SW-KF_S1_PLD_Slot2-38_1_8058_diatracer_percolator_target_psms.tsv Process 'Percolator: Delete temp' finished, exit code: 0 Percolator: Delete temp C:\Users\dubia\OneDrive\Desktop\FragPipe-jre-22.0\fragpipe\jre\bin\java.exe -cp C:\Users\dubia\OneDrive\Desktop\FragPipe-jre-22.0\fragpipe\lib\fragpipe-22.0.jar com.github.chhh.utils.FileDelete D:\20240927_SW-KF\PLD_method\output\20240927_SW-KF_S1_PLD_Slot2-38_1_8058_diatracer_percolator_decoy_psms.tsv Process 'Percolator: Delete temp' finished, exit code: 0 Percolator: Convert to pepxml [Work dir: D:\20240927_SW-KF\PLD_method\output] C:\Users\dubia\OneDrive\Desktop\FragPipe-jre-22.0\fragpipe\jre\bin\java.exe -cp C:\Users\dubia\OneDrive\Desktop\FragPipe-jre-22.0\fragpipe\lib/* com.dmtavt.fragpipe.tools.percolator.PercolatorOutputToPepXML 20240927_SW-KF_S1_sup_Slot2-37_1_8056_diatracer.pin 20240927_SW-KF_S1_sup_Slot2-37_1_8056_diatracer 20240927_SW-KF_S1_sup_Slot2-37_1_8056_diatracer_percolator_target_psms.tsv 20240927_SW-KF_S1_sup_Slot2-37_1_8056_diatracer_percolator_decoy_psms.tsv interact-20240927_SW-KF_S1_sup_Slot2-37_1_8056_diatracer DDA 0.5 D:\20240927_SW-KF\PLD_method\raw\20240927_SW-KF_S1_sup_Slot2-37_1_8056_diatracer_calibrated.mzML Process 'Percolator: Convert to pepxml' finished, exit code: 0 Percolator: Delete temp C:\Users\dubia\OneDrive\Desktop\FragPipe-jre-22.0\fragpipe\jre\bin\java.exe -cp C:\Users\dubia\OneDrive\Desktop\FragPipe-jre-22.0\fragpipe\lib\fragpipe-22.0.jar com.github.chhh.utils.FileDelete D:\20240927_SW-KF\PLD_method\output\20240927_SW-KF_S1_sup_Slot2-37_1_8056_diatracer_percolator_target_psms.tsv Process 'Percolator: Delete temp' finished, exit code: 0 Percolator: Delete temp C:\Users\dubia\OneDrive\Desktop\FragPipe-jre-22.0\fragpipe\jre\bin\java.exe -cp C:\Users\dubia\OneDrive\Desktop\FragPipe-jre-22.0\fragpipe\lib\fragpipe-22.0.jar com.github.chhh.utils.FileDelete D:\20240927_SW-KF\PLD_method\output\20240927_SW-KF_S1_sup_Slot2-37_1_8056_diatracer_percolator_decoy_psms.tsv Process 'Percolator: Delete temp' finished, exit code: 0 Percolator: Convert to pepxml [Work dir: D:\20240927_SW-KF\PLD_method\output] C:\Users\dubia\OneDrive\Desktop\FragPipe-jre-22.0\fragpipe\jre\bin\java.exe -cp C:\Users\dubia\OneDrive\Desktop\FragPipe-jre-22.0\fragpipe\lib/* com.dmtavt.fragpipe.tools.percolator.PercolatorOutputToPepXML 20240927_SW-KF_S2_total_Slot2-39_1_8060_diatracer.pin 20240927_SW-KF_S2_total_Slot2-39_1_8060_diatracer 20240927_SW-KF_S2_total_Slot2-39_1_8060_diatracer_percolator_target_psms.tsv 20240927_SW-KF_S2_total_Slot2-39_1_8060_diatracer_percolator_decoy_psms.tsv interact-20240927_SW-KF_S2_total_Slot2-39_1_8060_diatracer DDA 0.5 D:\20240927_SW-KF\PLD_method\raw\20240927_SW-KF_S2_total_Slot2-39_1_8060_diatracer_calibrated.mzML Process 'Percolator: Convert to pepxml' finished, exit code: 0 Percolator: Delete temp C:\Users\dubia\OneDrive\Desktop\FragPipe-jre-22.0\fragpipe\jre\bin\java.exe -cp C:\Users\dubia\OneDrive\Desktop\FragPipe-jre-22.0\fragpipe\lib\fragpipe-22.0.jar com.github.chhh.utils.FileDelete D:\20240927_SW-KF\PLD_method\output\20240927_SW-KF_S2_total_Slot2-39_1_8060_diatracer_percolator_target_psms.tsv Process 'Percolator: Delete temp' finished, exit code: 0 Percolator: Delete temp C:\Users\dubia\OneDrive\Desktop\FragPipe-jre-22.0\fragpipe\jre\bin\java.exe -cp C:\Users\dubia\OneDrive\Desktop\FragPipe-jre-22.0\fragpipe\lib\fragpipe-22.0.jar com.github.chhh.utils.FileDelete D:\20240927_SW-KF\PLD_method\output\20240927_SW-KF_S2_total_Slot2-39_1_8060_diatracer_percolator_decoy_psms.tsv Process 'Percolator: Delete temp' finished, exit code: 0 Percolator: Convert to pepxml [Work dir: D:\20240927_SW-KF\PLD_method\output] C:\Users\dubia\OneDrive\Desktop\FragPipe-jre-22.0\fragpipe\jre\bin\java.exe -cp C:\Users\dubia\OneDrive\Desktop\FragPipe-jre-22.0\fragpipe\lib/* com.dmtavt.fragpipe.tools.percolator.PercolatorOutputToPepXML 20240927_SW-KF_S2_PLD_Slot2-41_1_8063_diatracer.pin 20240927_SW-KF_S2_PLD_Slot2-41_1_8063_diatracer 20240927_SW-KF_S2_PLD_Slot2-41_1_8063_diatracer_percolator_target_psms.tsv 20240927_SW-KF_S2_PLD_Slot2-41_1_8063_diatracer_percolator_decoy_psms.tsv interact-20240927_SW-KF_S2_PLD_Slot2-41_1_8063_diatracer DDA 0.5 D:\20240927_SW-KF\PLD_method\raw\20240927_SW-KF_S2_PLD_Slot2-41_1_8063_diatracer_calibrated.mzML Process 'Percolator: Convert to pepxml' finished, exit code: 0 Percolator: Delete temp C:\Users\dubia\OneDrive\Desktop\FragPipe-jre-22.0\fragpipe\jre\bin\java.exe -cp C:\Users\dubia\OneDrive\Desktop\FragPipe-jre-22.0\fragpipe\lib\fragpipe-22.0.jar com.github.chhh.utils.FileDelete D:\20240927_SW-KF\PLD_method\output\20240927_SW-KF_S2_PLD_Slot2-41_1_8063_diatracer_percolator_target_psms.tsv Process 'Percolator: Delete temp' finished, exit code: 0 Percolator: Delete temp C:\Users\dubia\OneDrive\Desktop\FragPipe-jre-22.0\fragpipe\jre\bin\java.exe -cp C:\Users\dubia\OneDrive\Desktop\FragPipe-jre-22.0\fragpipe\lib\fragpipe-22.0.jar com.github.chhh.utils.FileDelete D:\20240927_SW-KF\PLD_method\output\20240927_SW-KF_S2_PLD_Slot2-41_1_8063_diatracer_percolator_decoy_psms.tsv Process 'Percolator: Delete temp' finished, exit code: 0 PTMProphet [Work dir: D:\20240927_SW-KF\PLD_method\output] C:\Users\dubia\OneDrive\Desktop\FragPipe-jre-22.0\fragpipe\tools\PTMProphet\PTMProphetParser.exe KEEPOLD STATIC EM=1 NIONS=b M:15.9949,n:42.0106,c:43.0422,DE:43.0422,c:87.03203,DE:87.03203 MINPROB=0.5 MAXTHREADS=1 interact-20240927_SW-KF_S2_total_Slot2-39_1_8060_diatracer.pep.xml interact-20240927_SW-KF_S2_total_Slot2-39_1_8060_diatracer.mod.pep.xml PTMProphet [Work dir: D:\20240927_SW-KF\PLD_method\output] C:\Users\dubia\OneDrive\Desktop\FragPipe-jre-22.0\fragpipe\tools\PTMProphet\PTMProphetParser.exe KEEPOLD STATIC EM=1 NIONS=b M:15.9949,n:42.0106,c:43.0422,DE:43.0422,c:87.03203,DE:87.03203 MINPROB=0.5 MAXTHREADS=1 interact-20240927_SW-KF_S2_sup_Slot2-40_1_8061_diatracer.pep.xml interact-20240927_SW-KF_S2_sup_Slot2-40_1_8061_diatracer.mod.pep.xml PTMProphet [Work dir: D:\20240927_SW-KF\PLD_method\output] C:\Users\dubia\OneDrive\Desktop\FragPipe-jre-22.0\fragpipe\tools\PTMProphet\PTMProphetParser.exe KEEPOLD STATIC EM=1 NIONS=b M:15.9949,n:42.0106,c:43.0422,DE:43.0422,c:87.03203,DE:87.03203 MINPROB=0.5 MAXTHREADS=1 interact-20240927_SW-KF_S2_PLD_Slot2-41_1_8063_diatracer.pep.xml interact-20240927_SW-KF_S2_PLD_Slot2-41_1_8063_diatracer.mod.pep.xml PTMProphet [Work dir: D:\20240927_SW-KF\PLD_method\output] C:\Users\dubia\OneDrive\Desktop\FragPipe-jre-22.0\fragpipe\tools\PTMProphet\PTMProphetParser.exe KEEPOLD STATIC EM=1 NIONS=b M:15.9949,n:42.0106,c:43.0422,DE:43.0422,c:87.03203,DE:87.03203 MINPROB=0.5 MAXTHREADS=1 interact-20240927_SW-KF_S1_PLD_Slot2-38_1_8058_diatracer.pep.xml interact-20240927_SW-KF_S1_PLD_Slot2-38_1_8058_diatracer.mod.pep.xml PTMProphet [Work dir: D:\20240927_SW-KF\PLD_method\output] C:\Users\dubia\OneDrive\Desktop\FragPipe-jre-22.0\fragpipe\tools\PTMProphet\PTMProphetParser.exe KEEPOLD STATIC EM=1 NIONS=b M:15.9949,n:42.0106,c:43.0422,DE:43.0422,c:87.03203,DE:87.03203 MINPROB=0.5 MAXTHREADS=1 interact-20240927_SW-KF_S1_total_Slot2-36_1_8055_diatracer.pep.xml interact-20240927_SW-KF_S1_total_Slot2-36_1_8055_diatracer.mod.pep.xml PTMProphet [Work dir: D:\20240927_SW-KF\PLD_method\output] C:\Users\dubia\OneDrive\Desktop\FragPipe-jre-22.0\fragpipe\tools\PTMProphet\PTMProphetParser.exe KEEPOLD STATIC EM=1 NIONS=b M:15.9949,n:42.0106,c:43.0422,DE:43.0422,c:87.03203,DE:87.03203 MINPROB=0.5 MAXTHREADS=1 interact-20240927_SW-KF_S1_sup_Slot2-37_1_8056_diatracer.pep.xml interact-20240927_SW-KF_S1_sup_Slot2-37_1_8056_diatracer.mod.pep.xml Please wait. PTMProphet is running. It can take a long time. Please wait. PTMProphet is running. It can take a long time. Please wait. PTMProphet is running. It can take a long time. Please wait. PTMProphet is running. It can take a long time. Please wait. PTMProphet is running. It can take a long time. Please wait. PTMProphet is running. It can take a long time. [INFO:] Using statically set 15 PPM tolerance ... [INFO:] Writing file interact-20240927_SW-KF_S2_PLD_Slot2-41_1_8063_diatracer.pep.xml.tmp.a36752 ... [INFO:] Creating 1 threads [INFO:] Wait for threads to finish ... [INFO:] Reading file interact-20240927_SW-KF_S2_PLD_Slot2-41_1_8063_diatracer.pep.xml ... [ERROR:] Cannot initialize for sequence: nFTVDSFGNYASC[160]GQIDFSc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_PLD_Slot2-41_1_8063_diatracer.03617.03617.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nEGYSAGPTSPNFSMSGYQAAc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_PLD_Slot2-41_1_8063_diatracer.14033.14033.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nQVGQTMPMVPPLDFTM[147]NAASVEc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_PLD_Slot2-41_1_8063_diatracer.17563.17563.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nAGSQPGGVEM[147]VGTSDWC[160]ALGASC[160]Sc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_PLD_Slot2-41_1_8063_diatracer.18032.18032.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nAEALLAMAEAEKGSNDc[61], unknown mods may exist in spectrum 20240927_SW-KF_S2_PLD_Slot2-41_1_8063_diatracer.18043.18043.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nVD[158]LFGVSAE[172]FKNVDc[61], unknown mods may exist in spectrum 20240927_SW-KF_S2_PLD_Slot2-41_1_8063_diatracer.19519.19519.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nAEALLAMAEAEKGSNDc[61], unknown mods may exist in spectrum 20240927_SW-KF_S2_PLD_Slot2-41_1_8063_diatracer.21881.21881.2 [INFO:] Please specify modification and rerun PTMProphet ... ​ [INFO:] processed 1000/44936 spectrum_queries [ERROR:] Cannot initialize for sequence: nMDSFLSSVADM[147]VQRc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_PLD_Slot2-41_1_8063_diatracer.25062.25062.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nLSGSNSNGSC[160]YNPC[160]Sc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_PLD_Slot2-41_1_8063_diatracer.26297.26297.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nMDSFLSSVADM[147]VQRc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_PLD_Slot2-41_1_8063_diatracer.31461.31461.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nNGMGPGGPGGPGGAAGADDAc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_PLD_Slot2-41_1_8063_diatracer.34869.34869.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nGPGAAPGGAVGGAGRGELEc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_PLD_Slot2-41_1_8063_diatracer.36082.36082.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nM[147]GGGIWWALC[160]AILNVGLTAC[160]YFc[61], unknown mods may exist in spectrum 20240927_SW-KF_S2_PLD_Slot2-41_1_8063_diatracer.38913.38913.3 [INFO:] Please specify modification and rerun PTMProphet ... ​ [INFO:] processed 2000/44936 spectrum_queries [ERROR:] Cannot initialize for sequence: nAEALLAMAEAEKGSNDc[61], unknown mods may exist in spectrum 20240927_SW-KF_S2_PLD_Slot2-41_1_8063_diatracer.44909.44909.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nVVATMEDMSHDQDSc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_PLD_Slot2-41_1_8063_diatracer.45840.45840.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nQLQC[160]SPREGPASTPMSSAAPQAPAc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_PLD_Slot2-41_1_8063_diatracer.46702.46702.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nLC[160]INIITSVHc[61], unknown mods may exist in spectrum 20240927_SW-KF_S2_PLD_Slot2-41_1_8063_diatracer.47428.47428.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nLC[160]INIITSVHc[61], unknown mods may exist in spectrum 20240927_SW-KF_S2_PLD_Slot2-41_1_8063_diatracer.48883.48883.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nPASARGNGPAAAAc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_PLD_Slot2-41_1_8063_diatracer.50012.50012.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nVLVTGSVGGLM[147]Ac[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_PLD_Slot2-41_1_8063_diatracer.50120.50120.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nPGLQRQESVFc[61], unknown mods may exist in spectrum 20240927_SW-KF_S2_PLD_Slot2-41_1_8063_diatracer.50170.50170.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nRSSTFQLGYDc[61], unknown mods may exist in spectrum 20240927_SW-KF_S2_PLD_Slot2-41_1_8063_diatracer.52091.52091.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nDSPQDEGC[160]VQKEGNFPc[61], unknown mods may exist in spectrum 20240927_SW-KF_S2_PLD_Slot2-41_1_8063_diatracer.53838.53838.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nELSPDEAC[160]PAAc[61], unknown mods may exist in spectrum 20240927_SW-KF_S2_PLD_Slot2-41_1_8063_diatracer.54563.54563.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nDALVFVLIDEc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_PLD_Slot2-41_1_8063_diatracer.54911.54911.2 [INFO:] Please specify modification and rerun PTMProphet ... ​ [INFO:] processed 3000/44936 spectrum_queries [ERROR:] Cannot initialize for sequence: nQHQHTGPGHQc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_PLD_Slot2-41_1_8063_diatracer.57626.57626.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nVEQAAAAASPSPSSFGSTVPC[160]VSKc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_PLD_Slot2-41_1_8063_diatracer.57684.57684.4 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nVEQAAAAASPSPSSFGSTVPC[160]VSKc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_PLD_Slot2-41_1_8063_diatracer.59135.59135.4 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nSVSLNLLQTHc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_PLD_Slot2-41_1_8063_diatracer.61552.61552.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nLC[160]INIITSVHc[61], unknown mods may exist in spectrum 20240927_SW-KF_S2_PLD_Slot2-41_1_8063_diatracer.63429.63429.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nMPANATMTSPYc[61], unknown mods may exist in spectrum 20240927_SW-KF_S2_PLD_Slot2-41_1_8063_diatracer.65252.65252.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nMTDPASWEGGFSNTYNc[61], unknown mods may exist in spectrum 20240927_SW-KF_S2_PLD_Slot2-41_1_8063_diatracer.67708.67708.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nSFM[147]ISADMAHc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_PLD_Slot2-41_1_8063_diatracer.67769.67769.2 [INFO:] Please specify modification and rerun PTMProphet ... ​ [INFO:] processed 4000/44936 spectrum_queries [ERROR:] Cannot initialize for sequence: nAIEEPTNQLLc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_PLD_Slot2-41_1_8063_diatracer.70808.70808.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nLGLPC[160]LAPGPFc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_PLD_Slot2-41_1_8063_diatracer.71190.71190.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nPDQC[160]C[160]VAPGGEc[61], unknown mods may exist in spectrum 20240927_SW-KF_S2_PLD_Slot2-41_1_8063_diatracer.71283.71283.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nVDPSAISGSLDEc[61], unknown mods may exist in spectrum 20240927_SW-KF_S2_PLD_Slot2-41_1_8063_diatracer.72797.72797.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nAKDNGFEPEC[160]c[61], unknown mods may exist in spectrum 20240927_SW-KF_S2_PLD_Slot2-41_1_8063_diatracer.75045.75045.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nLAAGQGAGAGQGGGAGGGLGGSGAc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_PLD_Slot2-41_1_8063_diatracer.76892.76892.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nAIEEPTNQLLc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_PLD_Slot2-41_1_8063_diatracer.78079.78079.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nPDQC[160]C[160]VAPGGEc[61], unknown mods may exist in spectrum 20240927_SW-KF_S2_PLD_Slot2-41_1_8063_diatracer.80008.80008.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nPSHPQGAc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_PLD_Slot2-41_1_8063_diatracer.81352.81352.2 [INFO:] Please specify modification and rerun PTMProphet ... ​ [INFO:] processed 5000/44936 spectrum_queries [ERROR:] Cannot initialize for sequence: nGADTGPAAHGYSSHGGHTQTRc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_PLD_Slot2-41_1_8063_diatracer.85416.85416.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nSNDYLASPTTEM[147]TSPGLTPSc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_PLD_Slot2-41_1_8063_diatracer.94640.94640.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nGGGPEESGGGAGSAAAGPQEc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_PLD_Slot2-41_1_8063_diatracer.102945.102945.2 [INFO:] Please specify modification and rerun PTMProphet ... ​ [INFO:] processed 6000/44936 spectrum_queries [ERROR:] Cannot initialize for sequence: nGGSAIGVLETVDQASTNc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_PLD_Slot2-41_1_8063_diatracer.108455.108455.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nEGAGEATSAPAM[147]DAHSGVc[61], unknown mods may exist in spectrum 20240927_SW-KF_S2_PLD_Slot2-41_1_8063_diatracer.108712.108712.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nQQLAAEPVPTGFFNMc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_PLD_Slot2-41_1_8063_diatracer.111602.111602.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nGGSAIGVLETVDQASTNc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_PLD_Slot2-41_1_8063_diatracer.112041.112041.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nNESNSAGSPADM[147]ELDSGc[61], unknown mods may exist in spectrum 20240927_SW-KF_S2_PLD_Slot2-41_1_8063_diatracer.112844.112844.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nIPLLAMNGILKTDPDc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_PLD_Slot2-41_1_8063_diatracer.117858.117858.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nLGEDKSTLFTATSM[147]Lc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_PLD_Slot2-41_1_8063_diatracer.118341.118341.2 [INFO:] Please specify modification and rerun PTMProphet ... ​ [INFO:] processed 7000/44936 spectrum_queries [ERROR:] Cannot initialize for sequence: nQLEDADIQGDQc[61], unknown mods may exist in spectrum 20240927_SW-KF_S2_PLD_Slot2-41_1_8063_diatracer.125758.125758.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nSKDKATIIQIPVQNFEc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_PLD_Slot2-41_1_8063_diatracer.125841.125841.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nSTETNTAVQALIDNMAESc[61], unknown mods may exist in spectrum 20240927_SW-KF_S2_PLD_Slot2-41_1_8063_diatracer.127682.127682.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nM[147]AQTLANFYQc[61], unknown mods may exist in spectrum 20240927_SW-KF_S2_PLD_Slot2-41_1_8063_diatracer.127936.127936.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nYLDDEYAEITEYGGFc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_PLD_Slot2-41_1_8063_diatracer.129278.129278.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nGLPGPQGPTGPSGPc[61], unknown mods may exist in spectrum 20240927_SW-KF_S2_PLD_Slot2-41_1_8063_diatracer.129818.129818.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nPSSDHSGSTTPSc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_PLD_Slot2-41_1_8063_diatracer.130670.130670.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nETTTSSHSQAEc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_PLD_Slot2-41_1_8063_diatracer.131196.131196.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nEEVAAAATPGPGVc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_PLD_Slot2-41_1_8063_diatracer.133768.133768.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nETTTSSHSQAEc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_PLD_Slot2-41_1_8063_diatracer.136956.136956.2 [INFO:] Please specify modification and rerun PTMProphet ... ​ [INFO:] processed 8000/44936 spectrum_queries [ERROR:] Cannot initialize for sequence: nVQFNFLQLWc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_PLD_Slot2-41_1_8063_diatracer.139036.139036.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nDM[147]KLVLIGHSIc[61], unknown mods may exist in spectrum 20240927_SW-KF_S2_PLD_Slot2-41_1_8063_diatracer.139073.139073.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nGHQADSGSHHEc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_PLD_Slot2-41_1_8063_diatracer.139262.139262.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nAAGAGGGAAAAM[147]AAAAc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_PLD_Slot2-41_1_8063_diatracer.139689.139689.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nSLEWIEGNQLQVTVYDc[61], unknown mods may exist in spectrum 20240927_SW-KF_S2_PLD_Slot2-41_1_8063_diatracer.140645.140645.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nSTETNTAVQALIDNMAESc[61], unknown mods may exist in spectrum 20240927_SW-KF_S2_PLD_Slot2-41_1_8063_diatracer.142065.142065.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nVYYVVLVIWGEMC[160]VSc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_PLD_Slot2-41_1_8063_diatracer.142836.142836.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nC[160]GSLHGDVSASNc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_PLD_Slot2-41_1_8063_diatracer.143415.143415.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nC[160]ADC[160]GLNVHKc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_PLD_Slot2-41_1_8063_diatracer.144177.144177.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nLVM[147]GPPLIGPPRLAWWc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_PLD_Slot2-41_1_8063_diatracer.145855.145855.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nQTMSHDSQAVASSLQSC[160]c[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_PLD_Slot2-41_1_8063_diatracer.146154.146154.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nC[160]GSLHGDVSASNc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_PLD_Slot2-41_1_8063_diatracer.146295.146295.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nLAGAFSSDTSFFc[61], unknown mods may exist in spectrum 20240927_SW-KF_S2_PLD_Slot2-41_1_8063_diatracer.146342.146342.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nM[147]PANATM[147]TSPYc[61], unknown mods may exist in spectrum 20240927_SW-KF_S2_PLD_Slot2-41_1_8063_diatracer.146719.146719.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nDEEDLADEM[147]IC[160]ITTLc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_PLD_Slot2-41_1_8063_diatracer.147910.147910.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nGDGGGAGGGGGGGGSGGGGSGGGGGGGSSc[61], unknown mods may exist in spectrum 20240927_SW-KF_S2_PLD_Slot2-41_1_8063_diatracer.148605.148605.3 [INFO:] Please specify modification and rerun PTMProphet ... ​ [INFO:] processed 9000/44936 spectrum_queries [ERROR:] Cannot initialize for sequence: nSASATSPAPSASTVc[61], unknown mods may exist in spectrum 20240927_SW-KF_S2_PLD_Slot2-41_1_8063_diatracer.151684.151684.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nEQEQEGARDEc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_PLD_Slot2-41_1_8063_diatracer.155938.155938.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nSHPFFTPVDWAELM[147]Rc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_PLD_Slot2-41_1_8063_diatracer.156410.156410.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nLC[160]INIITSVHc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_PLD_Slot2-41_1_8063_diatracer.156876.156876.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nDELLC[160]SSNPLSc[61], unknown mods may exist in spectrum 20240927_SW-KF_S2_PLD_Slot2-41_1_8063_diatracer.157458.157458.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nAGGPPRNQc[61], unknown mods may exist in spectrum 20240927_SW-KF_S2_PLD_Slot2-41_1_8063_diatracer.161986.161986.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nEWAHPSHHFc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_PLD_Slot2-41_1_8063_diatracer.162119.162119.3 [INFO:] Please specify modification and rerun PTMProphet ... ​ [INFO:] processed 10000/44936 spectrum_queries [ERROR:] Cannot initialize for sequence: nFQQLVSLAGEEc[61], unknown mods may exist in spectrum 20240927_SW-KF_S2_PLD_Slot2-41_1_8063_diatracer.164279.164279.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nELSEPGTAIDc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_PLD_Slot2-41_1_8063_diatracer.167749.167749.1 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nGPGPSQGQLGGPGPEPC[160]EASMGGAc[61], unknown mods may exist in spectrum 20240927_SW-KF_S2_PLD_Slot2-41_1_8063_diatracer.168271.168271.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nPGWRTATLWTSLGTAGC[160]WGSc[61], unknown mods may exist in spectrum 20240927_SW-KF_S2_PLD_Slot2-41_1_8063_diatracer.170754.170754.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nDHLYKEQC[160]GSGGSDRc[61], unknown mods may exist in spectrum 20240927_SW-KF_S2_PLD_Slot2-41_1_8063_diatracer.176625.176625.2 [INFO:] Please specify modification and rerun PTMProphet ... ​ [INFO:] processed 11000/44936 spectrum_queries [ERROR:] Cannot initialize for sequence: nASSGAASDSSM[147]AATSDEATc[61], unknown mods may exist in spectrum 20240927_SW-KF_S2_PLD_Slot2-41_1_8063_diatracer.184928.184928.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nNTSLPLHVLFMTSPLc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_PLD_Slot2-41_1_8063_diatracer.186698.186698.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nLTTELQGQQIALEEEc[61], unknown mods may exist in spectrum 20240927_SW-KF_S2_PLD_Slot2-41_1_8063_diatracer.192138.192138.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nPNPLETQSEQGQSLSLFM[147]LSSILM[147]FFSNTQAc[61], unknown mods may exist in spectrum 20240927_SW-KF_S2_PLD_Slot2-41_1_8063_diatracer.193615.193615.4 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nHHPDYPC[160]IEFAEPEc[61], unknown mods may exist in spectrum 20240927_SW-KF_S2_PLD_Slot2-41_1_8063_diatracer.194026.194026.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nHGNLHSM[147]ALQAQNGDAc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_PLD_Slot2-41_1_8063_diatracer.198136.198136.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nDGNITLNPSQTSVM[147]Yc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_PLD_Slot2-41_1_8063_diatracer.200034.200034.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nNLLTGETEADPEM[147]IKc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_PLD_Slot2-41_1_8063_diatracer.200327.200327.2 [INFO:] Please specify modification and rerun PTMProphet ... ​ [INFO:] processed 12000/44936 spectrum_queries [ERROR:] Cannot initialize for sequence: nHWGASPSTGAEEc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_PLD_Slot2-41_1_8063_diatracer.202941.202941.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nPDVSSGRC[160]EGC[160]c[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_PLD_Slot2-41_1_8063_diatracer.202960.202960.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nVEEEME[172]ELNGDEIALWc[61], unknown mods may exist in spectrum 20240927_SW-KF_S2_PLD_Slot2-41_1_8063_diatracer.204867.204867.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nVEEEME[172]ELNGDEIALWc[61], unknown mods may exist in spectrum 20240927_SW-KF_S2_PLD_Slot2-41_1_8063_diatracer.206322.206322.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nLSLLEESSFGAEVGAGAGAASc[61], unknown mods may exist in spectrum 20240927_SW-KF_S2_PLD_Slot2-41_1_8063_diatracer.207334.207334.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nM[147]AAGWLTTWSQNSVTFQc[61], unknown mods may exist in spectrum 20240927_SW-KF_S2_PLD_Slot2-41_1_8063_diatracer.209270.209270.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nPC[160]GSSSWASSEAc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_PLD_Slot2-41_1_8063_diatracer.210215.210215.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nHM[147]AQM[147]ANQDPESIMFNc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_PLD_Slot2-41_1_8063_diatracer.213347.213347.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nIHFSVEATIETc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_PLD_Slot2-41_1_8063_diatracer.213727.213727.2 [INFO:] Please specify modification and rerun PTMProphet ... ​ [INFO:] processed 13000/44936 spectrum_queries [ERROR:] Cannot initialize for sequence: nSVM[147]LENYSNLVc[61], unknown mods may exist in spectrum 20240927_SW-KF_S2_PLD_Slot2-41_1_8063_diatracer.216596.216596.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nTPTSGQSVSTC[160]Sc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_PLD_Slot2-41_1_8063_diatracer.219995.219995.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nPLIGTVLAMDPDAARHSIGc[61], unknown mods may exist in spectrum 20240927_SW-KF_S2_PLD_Slot2-41_1_8063_diatracer.223531.223531.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nSFYLALFVWTLPFM[147]Dc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_PLD_Slot2-41_1_8063_diatracer.224666.224666.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nSYM[147]RFPYEEc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_PLD_Slot2-41_1_8063_diatracer.228073.228073.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nDHSVAESLNYVc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_PLD_Slot2-41_1_8063_diatracer.229426.229426.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nSFSSDSSDSSHPc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_PLD_Slot2-41_1_8063_diatracer.229510.229510.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nPSSSGPASPGPYGGTAGSALSC[160]c[61], unknown mods may exist in spectrum 20240927_SW-KF_S2_PLD_Slot2-41_1_8063_diatracer.230053.230053.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nM[147]PAEEPGATGGPQc[61], unknown mods may exist in spectrum 20240927_SW-KF_S2_PLD_Slot2-41_1_8063_diatracer.230113.230113.2 [INFO:] Please specify modification and rerun PTMProphet ... ​ [INFO:] processed 14000/44936 spectrum_queries [ERROR:] Cannot initialize for sequence: nDHSVAESLNYVc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_PLD_Slot2-41_1_8063_diatracer.233788.233788.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nSSGGGGGAAc[61], unknown mods may exist in spectrum 20240927_SW-KF_S2_PLD_Slot2-41_1_8063_diatracer.234033.234033.1 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nPIEENLVc[61], unknown mods may exist in spectrum 20240927_SW-KF_S2_PLD_Slot2-41_1_8063_diatracer.235050.235050.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nAVSTPNLSc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_PLD_Slot2-41_1_8063_diatracer.235256.235256.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nPPSPAHSREVASc[61], unknown mods may exist in spectrum 20240927_SW-KF_S2_PLD_Slot2-41_1_8063_diatracer.235542.235542.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nLFHVVSLc[61], unknown mods may exist in spectrum 20240927_SW-KF_S2_PLD_Slot2-41_1_8063_diatracer.236011.236011.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nQLGGGWGIc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_PLD_Slot2-41_1_8063_diatracer.238150.238150.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nGWVAGNASc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_PLD_Slot2-41_1_8063_diatracer.239788.239788.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nM[147]GLAMGGGGc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_PLD_Slot2-41_1_8063_diatracer.240341.240341.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nGGAGPSAVTSc[61], unknown mods may exist in spectrum 20240927_SW-KF_S2_PLD_Slot2-41_1_8063_diatracer.241723.241723.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nGGGYNVFVc[61], unknown mods may exist in spectrum 20240927_SW-KF_S2_PLD_Slot2-41_1_8063_diatracer.241829.241829.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nVHSHSAEc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_PLD_Slot2-41_1_8063_diatracer.242284.242284.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nVHSHSAEc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_PLD_Slot2-41_1_8063_diatracer.243246.243246.2 [INFO:] Please specify modification and rerun PTMProphet ... ​ [INFO:] processed 15000/44936 spectrum_queries [ERROR:] Cannot initialize for sequence: nLFHVVSLc[61], unknown mods may exist in spectrum 20240927_SW-KF_S2_PLD_Slot2-41_1_8063_diatracer.243800.243800.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nETGKLTHc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_PLD_Slot2-41_1_8063_diatracer.245306.245306.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nLSC[160]TM[147]IVPVNSQYTTDWATc[61], unknown mods may exist in spectrum 20240927_SW-KF_S2_PLD_Slot2-41_1_8063_diatracer.250734.250734.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nIYRTEMAPGASQGDQQc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_PLD_Slot2-41_1_8063_diatracer.260361.260361.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nQTDLEVMLSVDSC[160]HHc[61], unknown mods may exist in spectrum 20240927_SW-KF_S2_PLD_Slot2-41_1_8063_diatracer.262019.262019.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nLGGEIVSADSMQELASFc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_PLD_Slot2-41_1_8063_diatracer.262780.262780.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nNILVSDM[147]EM[147]NEQQEc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_PLD_Slot2-41_1_8063_diatracer.266367.266367.2 [INFO:] Please specify modification and rerun PTMProphet ... ​ [INFO:] processed 16000/44936 spectrum_queries [ERROR:] Cannot initialize for sequence: nLGGEIVSADSMQELASFc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_PLD_Slot2-41_1_8063_diatracer.267428.267428.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nGVAEVTVDVVGYLSM[147]SNc[61], unknown mods may exist in spectrum 20240927_SW-KF_S2_PLD_Slot2-41_1_8063_diatracer.271007.271007.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nGGGNGNGNAPPGGTGPAAPDEc[61], unknown mods may exist in spectrum 20240927_SW-KF_S2_PLD_Slot2-41_1_8063_diatracer.272361.272361.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nLQEFAVQALM[147]NLEDKc[61], unknown mods may exist in spectrum 20240927_SW-KF_S2_PLD_Slot2-41_1_8063_diatracer.278185.278185.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nEALSGVTSHGLSC[160]c[61], unknown mods may exist in spectrum 20240927_SW-KF_S2_PLD_Slot2-41_1_8063_diatracer.281979.281979.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nIAIGQTDNIIYVYKIGEDc[61], unknown mods may exist in spectrum 20240927_SW-KF_S2_PLD_Slot2-41_1_8063_diatracer.283800.283800.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nQAPEENQPTNESLQEEWc[61], unknown mods may exist in spectrum 20240927_SW-KF_S2_PLD_Slot2-41_1_8063_diatracer.285402.285402.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nQM[147]LDDIPEDNTc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_PLD_Slot2-41_1_8063_diatracer.285497.285497.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nLWHVC[160]GHAVPLLLGGPGEEc[61], unknown mods may exist in spectrum 20240927_SW-KF_S2_PLD_Slot2-41_1_8063_diatracer.285619.285619.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nLETVVQMQQGD[158]QYSDISLTQTAMc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_PLD_Slot2-41_1_8063_diatracer.286187.286187.4 [INFO:] Please specify modification and rerun PTMProphet ... ​ [INFO:] processed 17000/44936 spectrum_queries [ERROR:] Cannot initialize for sequence: nWDVPGEPESLEAc[61], unknown mods may exist in spectrum 20240927_SW-KF_S2_PLD_Slot2-41_1_8063_diatracer.292130.292130.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nIAIGQTDNIIYVYKIGEDc[61], unknown mods may exist in spectrum 20240927_SW-KF_S2_PLD_Slot2-41_1_8063_diatracer.292340.292340.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nIM[147]IFGSFM[147]GNDc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_PLD_Slot2-41_1_8063_diatracer.298647.298647.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nSSVHSAPPLHESMALEHFc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_PLD_Slot2-41_1_8063_diatracer.299362.299362.3 [INFO:] Please specify modification and rerun PTMProphet ... ​ [INFO:] processed 18000/44936 spectrum_queries [ERROR:] Cannot initialize for sequence: nAKGEIPEVAFM[147]Kc[61], unknown mods may exist in spectrum 20240927_SW-KF_S2_PLD_Slot2-41_1_8063_diatracer.300889.300889.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nSVNVM[147]TEIQNLQQIDFSc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_PLD_Slot2-41_1_8063_diatracer.305099.305099.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nFSPLM[147]TAAGM[147]ISc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_PLD_Slot2-41_1_8063_diatracer.307071.307071.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nGVISPNFSFM[147]GQLLQFETQVLC[160]Hc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_PLD_Slot2-41_1_8063_diatracer.307991.307991.4 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nFSLTMYGDENEc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_PLD_Slot2-41_1_8063_diatracer.308261.308261.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nPGTSLFSWHPVFM[147]ALADVc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_PLD_Slot2-41_1_8063_diatracer.313734.313734.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nFSLTMYGDENEc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_PLD_Slot2-41_1_8063_diatracer.313938.313938.2 [INFO:] Please specify modification and rerun PTMProphet ... ​ [INFO:] processed 19000/44936 spectrum_queries [ERROR:] Cannot initialize for sequence: nSISLHKSGc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_PLD_Slot2-41_1_8063_diatracer.314984.314984.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nLM[147]GVETVVc[61], unknown mods may exist in spectrum 20240927_SW-KF_S2_PLD_Slot2-41_1_8063_diatracer.315558.315558.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nEDRSASSGc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_PLD_Slot2-41_1_8063_diatracer.316766.316766.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nRADDLHTSLVDGc[61], unknown mods may exist in spectrum 20240927_SW-KF_S2_PLD_Slot2-41_1_8063_diatracer.317431.317431.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nLLYPVLC[160]c[61], unknown mods may exist in spectrum 20240927_SW-KF_S2_PLD_Slot2-41_1_8063_diatracer.318381.318381.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nLLYPVLC[160]c[61], unknown mods may exist in spectrum 20240927_SW-KF_S2_PLD_Slot2-41_1_8063_diatracer.320343.320343.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nSSPTGEGAAAc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_PLD_Slot2-41_1_8063_diatracer.320498.320498.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nLPC[160]YSSTSWISc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_PLD_Slot2-41_1_8063_diatracer.321070.321070.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nEEAVGTATAc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_PLD_Slot2-41_1_8063_diatracer.321783.321783.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nSAVC[160]IHQc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_PLD_Slot2-41_1_8063_diatracer.322630.322630.2 [INFO:] Please specify modification and rerun PTMProphet ... ​ [INFO:] processed 20000/44936 spectrum_queries [ERROR:] Cannot initialize for sequence: nSHQNLELPQALPSPEDc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_PLD_Slot2-41_1_8063_diatracer.326419.326419.4 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nDLPPAEPAAc[61], unknown mods may exist in spectrum 20240927_SW-KF_S2_PLD_Slot2-41_1_8063_diatracer.328994.328994.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nNNLSFIETSALD[158]STNVEEAFc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_PLD_Slot2-41_1_8063_diatracer.329439.329439.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nNNLSFIETSALDSTNVE[172]EAFc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_PLD_Slot2-41_1_8063_diatracer.330834.330834.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nNNLSFIETSALD[158]STNVEEAFc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_PLD_Slot2-41_1_8063_diatracer.331391.331391.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nDFYPQGQPPPPSAAEPVTEESc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_PLD_Slot2-41_1_8063_diatracer.331902.331902.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nNNLSFIETSALD[158]STNVEEAFc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_PLD_Slot2-41_1_8063_diatracer.335012.335012.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nHEMVEESPGASSVLHFc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_PLD_Slot2-41_1_8063_diatracer.336732.336732.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nAC[160]LSQEVNEHDPENEc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_PLD_Slot2-41_1_8063_diatracer.343142.343142.2 [INFO:] Please specify modification and rerun PTMProphet ... ​ [INFO:] processed 21000/44936 spectrum_queries [ERROR:] Cannot initialize for sequence: nQLLVPHNPGTC[160]HWLLc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_PLD_Slot2-41_1_8063_diatracer.345679.345679.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nGDLHLPDHHLSVPSSADHPAQHPSFPc[61], unknown mods may exist in spectrum 20240927_SW-KF_S2_PLD_Slot2-41_1_8063_diatracer.346124.346124.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nKDAEEEESELTSWM[147]Ac[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_PLD_Slot2-41_1_8063_diatracer.347401.347401.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nTFDQLDAISSLPTPSDIFVSYSTFPc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_PLD_Slot2-41_1_8063_diatracer.348133.348133.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nSLPEGM[147]GPGESGQPPPAC[160]c[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_PLD_Slot2-41_1_8063_diatracer.348754.348754.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nSLPEGM[147]GPGESGQPPPAC[160]c[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_PLD_Slot2-41_1_8063_diatracer.352960.352960.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nLSDSM[147]MSALDLSGNADDGVGDc[61], unknown mods may exist in spectrum 20240927_SW-KF_S2_PLD_Slot2-41_1_8063_diatracer.360550.360550.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nAETGNLELEWGGSc[61], unknown mods may exist in spectrum 20240927_SW-KF_S2_PLD_Slot2-41_1_8063_diatracer.362924.362924.2 [INFO:] Please specify modification and rerun PTMProphet ... ​ [INFO:] processed 22000/44936 spectrum_queries [ERROR:] Cannot initialize for sequence: nNYQVTNSM[147]FGASc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_PLD_Slot2-41_1_8063_diatracer.366004.366004.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nIGFLGLGLM[147]GSGIVc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_PLD_Slot2-41_1_8063_diatracer.366542.366542.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nSEPSPSC[160]SPSMSTc[61], unknown mods may exist in spectrum 20240927_SW-KF_S2_PLD_Slot2-41_1_8063_diatracer.366768.366768.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nYSFPVEM[147]MIC[160]LPNGTVMAc[61], unknown mods may exist in spectrum 20240927_SW-KF_S2_PLD_Slot2-41_1_8063_diatracer.367203.367203.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: n[43]MMNFAFEC[160]LEc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_PLD_Slot2-41_1_8063_diatracer.367358.367358.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nTTSNTPGGAEASGNHPDSLASDc[61], unknown mods may exist in spectrum 20240927_SW-KF_S2_PLD_Slot2-41_1_8063_diatracer.367459.367459.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nLGEEEEGASSTVC[160]c[61], unknown mods may exist in spectrum 20240927_SW-KF_S2_PLD_Slot2-41_1_8063_diatracer.371279.371279.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nSFEEWTQYQPc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_PLD_Slot2-41_1_8063_diatracer.372557.372557.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nLPTGEDAPQEHGLc[61], unknown mods may exist in spectrum 20240927_SW-KF_S2_PLD_Slot2-41_1_8063_diatracer.372611.372611.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nFLYDYEPNMSSc[61], unknown mods may exist in spectrum 20240927_SW-KF_S2_PLD_Slot2-41_1_8063_diatracer.374026.374026.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nSVLIVSIPSTNDRc[61], unknown mods may exist in spectrum 20240927_SW-KF_S2_PLD_Slot2-41_1_8063_diatracer.374972.374972.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nNTLFTRILNGQVc[61], unknown mods may exist in spectrum 20240927_SW-KF_S2_PLD_Slot2-41_1_8063_diatracer.375788.375788.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nESPVLETPPPSPQc[61], unknown mods may exist in spectrum 20240927_SW-KF_S2_PLD_Slot2-41_1_8063_diatracer.375840.375840.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nETVFPYLEDIPc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_PLD_Slot2-41_1_8063_diatracer.378266.378266.2 [INFO:] Please specify modification and rerun PTMProphet ... ​ [INFO:] processed 23000/44936 spectrum_queries [ERROR:] Cannot initialize for sequence: nLPTGEDAPQEHGLc[61], unknown mods may exist in spectrum 20240927_SW-KF_S2_PLD_Slot2-41_1_8063_diatracer.379524.379524.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nEEAMAGGESVADAEc[61], unknown mods may exist in spectrum 20240927_SW-KF_S2_PLD_Slot2-41_1_8063_diatracer.379588.379588.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nPGM[147]DSPYDFSYSc[61], unknown mods may exist in spectrum 20240927_SW-KF_S2_PLD_Slot2-41_1_8063_diatracer.380053.380053.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nLYEPC[160]YC[160]SSLGc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_PLD_Slot2-41_1_8063_diatracer.380214.380214.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nTSSSEAHIPDQETTSLTSGTc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_PLD_Slot2-41_1_8063_diatracer.384281.384281.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nETRGSTSLNGMRc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_PLD_Slot2-41_1_8063_diatracer.384846.384846.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nIEAM[147]LEC[160]QQFLQLQFYc[61], unknown mods may exist in spectrum 20240927_SW-KF_S2_PLD_Slot2-41_1_8063_diatracer.385135.385135.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nFVSC[160]PPDPHKGIEFGVYC[160]c[61], unknown mods may exist in spectrum 20240927_SW-KF_S2_PLD_Slot2-41_1_8063_diatracer.387204.387204.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nTAGAMMQFTAPIPc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_PLD_Slot2-41_1_8063_diatracer.390959.390959.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nSLLM[147]AGAVASSTFLc[61], unknown mods may exist in spectrum 20240927_SW-KF_S2_PLD_Slot2-41_1_8063_diatracer.391826.391826.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nVSFPTPTLAPSPFc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_PLD_Slot2-41_1_8063_diatracer.392088.392088.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nKQGAGAPTAPc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_PLD_Slot2-41_1_8063_diatracer.393101.393101.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nESVQGAAQDc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_PLD_Slot2-41_1_8063_diatracer.393248.393248.2 [INFO:] Please specify modification and rerun PTMProphet ... ​ [INFO:] processed 24000/44936 spectrum_queries [ERROR:] Cannot initialize for sequence: nSLLM[147]AGAVASSTFLc[61], unknown mods may exist in spectrum 20240927_SW-KF_S2_PLD_Slot2-41_1_8063_diatracer.397031.397031.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nLGLQLAAVAAc[61], unknown mods may exist in spectrum 20240927_SW-KF_S2_PLD_Slot2-41_1_8063_diatracer.398973.398973.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nVTSATPM[147]SC[160]VEAVc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_PLD_Slot2-41_1_8063_diatracer.399798.399798.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nGGAAASAAGAAPAc[61], unknown mods may exist in spectrum 20240927_SW-KF_S2_PLD_Slot2-41_1_8063_diatracer.400989.400989.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nGAGPGGGC[160]ERc[61], unknown mods may exist in spectrum 20240927_SW-KF_S2_PLD_Slot2-41_1_8063_diatracer.404923.404923.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nSGVSGGHERc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_PLD_Slot2-41_1_8063_diatracer.405884.405884.2 [INFO:] Please specify modification and rerun PTMProphet ... ​ [INFO:] processed 25000/44936 spectrum_queries [ERROR:] Cannot initialize for sequence: nVSFPTPTLAPSPFc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_PLD_Slot2-41_1_8063_diatracer.406742.406742.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nQLYLTQHc[61], unknown mods may exist in spectrum 20240927_SW-KF_S2_PLD_Slot2-41_1_8063_diatracer.407347.407347.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nEVTAGPQEGc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_PLD_Slot2-41_1_8063_diatracer.407753.407753.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nIVSASLIMSc[61], unknown mods may exist in spectrum 20240927_SW-KF_S2_PLD_Slot2-41_1_8063_diatracer.409328.409328.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nFALFSAGAVLLGTPAc[61], unknown mods may exist in spectrum 20240927_SW-KF_S2_PLD_Slot2-41_1_8063_diatracer.409647.409647.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nIVSASLIMSc[61], unknown mods may exist in spectrum 20240927_SW-KF_S2_PLD_Slot2-41_1_8063_diatracer.410192.410192.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nQQGRNSGVSc[61], unknown mods may exist in spectrum 20240927_SW-KF_S2_PLD_Slot2-41_1_8063_diatracer.410401.410401.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nQQGRNSGVSc[61], unknown mods may exist in spectrum 20240927_SW-KF_S2_PLD_Slot2-41_1_8063_diatracer.410402.410402.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nNVWGFLGIc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_PLD_Slot2-41_1_8063_diatracer.410675.410675.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nVSFPTPTLAPSPFc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_PLD_Slot2-41_1_8063_diatracer.411195.411195.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nNFIPGISFYTSFFSSFc[61], unknown mods may exist in spectrum 20240927_SW-KF_S2_PLD_Slot2-41_1_8063_diatracer.423238.423238.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nYLAPSNQSVEQEAMQLc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_PLD_Slot2-41_1_8063_diatracer.424969.424969.2 [INFO:] Please specify modification and rerun PTMProphet ... ​ [INFO:] processed 27000/44936 spectrum_queries [ERROR:] Cannot initialize for sequence: nLHHYTWWMQHc[61], unknown mods may exist in spectrum 20240927_SW-KF_S2_PLD_Slot2-41_1_8063_diatracer.448339.448339.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nEVLNSITGLVEKTc[61], unknown mods may exist in spectrum 20240927_SW-KF_S2_PLD_Slot2-41_1_8063_diatracer.449993.449993.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nM[147]LDLAC[160]DLQQDSc[61], unknown mods may exist in spectrum 20240927_SW-KF_S2_PLD_Slot2-41_1_8063_diatracer.450416.450416.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nPRHSLDSGSDKLSc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_PLD_Slot2-41_1_8063_diatracer.450798.450798.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nVSLC[160]HPVWSAMAc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_PLD_Slot2-41_1_8063_diatracer.453779.453779.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nLYDEIFISSEPNc[61], unknown mods may exist in spectrum 20240927_SW-KF_S2_PLD_Slot2-41_1_8063_diatracer.458078.458078.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nPQETEDPDHC[160]LGc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_PLD_Slot2-41_1_8063_diatracer.458486.458486.2 [INFO:] Please specify modification and rerun PTMProphet ... ​ [INFO:] processed 28000/44936 spectrum_queries [ERROR:] Cannot initialize for sequence: nPQETEDPDHC[160]LGc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_PLD_Slot2-41_1_8063_diatracer.461028.461028.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nVQLAGC[160]SEVAGGVGNc[61], unknown mods may exist in spectrum 20240927_SW-KF_S2_PLD_Slot2-41_1_8063_diatracer.462994.462994.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nLEMEEPDSVSGTSc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_PLD_Slot2-41_1_8063_diatracer.464437.464437.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nVSLC[160]HPVWSAMAc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_PLD_Slot2-41_1_8063_diatracer.465213.465213.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nSGD[158]IWLDAYLHQc[61], unknown mods may exist in spectrum 20240927_SW-KF_S2_PLD_Slot2-41_1_8063_diatracer.469150.469150.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nSGD[158]IWLDAYLHQc[61], unknown mods may exist in spectrum 20240927_SW-KF_S2_PLD_Slot2-41_1_8063_diatracer.471214.471214.3 [INFO:] Please specify modification and rerun PTMProphet ... ​ [INFO:] processed 29000/44936 spectrum_queries [ERROR:] Cannot initialize for sequence: nNLTGVPDDYYPRc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_PLD_Slot2-41_1_8063_diatracer.475114.475114.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nGALQAVDQLc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_PLD_Slot2-41_1_8063_diatracer.475296.475296.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nLHRALHWc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_PLD_Slot2-41_1_8063_diatracer.476663.476663.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nAQPTTADPTPc[61], unknown mods may exist in spectrum 20240927_SW-KF_S2_PLD_Slot2-41_1_8063_diatracer.477126.477126.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nATEENGMGQVSGTKc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_PLD_Slot2-41_1_8063_diatracer.478253.478253.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nINEGLEHLAKAEKc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_PLD_Slot2-41_1_8063_diatracer.479854.479854.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nNERLHHDc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_PLD_Slot2-41_1_8063_diatracer.481449.481449.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nPGSEADFSSSc[61], unknown mods may exist in spectrum 20240927_SW-KF_S2_PLD_Slot2-41_1_8063_diatracer.482902.482902.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nLHRALHWc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_PLD_Slot2-41_1_8063_diatracer.483885.483885.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nPAPPAQSLNPFLAPc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_PLD_Slot2-41_1_8063_diatracer.484518.484518.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nELEDIQQHPLAMc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_PLD_Slot2-41_1_8063_diatracer.485557.485557.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nTC[160]NLDMQDNAAANc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_PLD_Slot2-41_1_8063_diatracer.485848.485848.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nEAVVHGLNEc[61], unknown mods may exist in spectrum 20240927_SW-KF_S2_PLD_Slot2-41_1_8063_diatracer.486790.486790.2 [INFO:] Please specify modification and rerun PTMProphet ... ​ [INFO:] processed 30000/44936 spectrum_queries [ERROR:] Cannot initialize for sequence: nGPSASAALSPPc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_PLD_Slot2-41_1_8063_diatracer.490498.490498.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nLTNSHAMGSFSGVAGGTVGGNc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_PLD_Slot2-41_1_8063_diatracer.490713.490713.4 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nPEDC[160]PALSVAHGGALLPSSM[147]VQSc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_PLD_Slot2-41_1_8063_diatracer.494680.494680.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nDNYC[160]IISSSEESELDNc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_PLD_Slot2-41_1_8063_diatracer.498633.498633.2 [INFO:] Please specify modification and rerun PTMProphet ... ​ [INFO:] processed 31000/44936 spectrum_queries [ERROR:] Cannot initialize for sequence: nQAEAFAVSC[160]NAEAEELGEc[61], unknown mods may exist in spectrum 20240927_SW-KF_S2_PLD_Slot2-41_1_8063_diatracer.511343.511343.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nAPEQFEYFDQWDGDAAc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_PLD_Slot2-41_1_8063_diatracer.512285.512285.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nNTSNLIWYSVTSSc[61], unknown mods may exist in spectrum 20240927_SW-KF_S2_PLD_Slot2-41_1_8063_diatracer.516858.516858.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nANGQIVPSYVHPHc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_PLD_Slot2-41_1_8063_diatracer.517786.517786.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nNSAASSSSLIGATSLPc[61], unknown mods may exist in spectrum 20240927_SW-KF_S2_PLD_Slot2-41_1_8063_diatracer.517851.517851.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nVAPGEYNDFSEPLc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_PLD_Slot2-41_1_8063_diatracer.518473.518473.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nLNSFGMSLYIPEQc[61], unknown mods may exist in spectrum 20240927_SW-KF_S2_PLD_Slot2-41_1_8063_diatracer.524050.524050.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nM[147]TLSGMSGLQSGSDSc[61], unknown mods may exist in spectrum 20240927_SW-KF_S2_PLD_Slot2-41_1_8063_diatracer.524840.524840.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nC[160]ADELM[147]PPPYQNc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_PLD_Slot2-41_1_8063_diatracer.525248.525248.2 [INFO:] Please specify modification and rerun PTMProphet ... ​ [INFO:] processed 32000/44936 spectrum_queries [ERROR:] Cannot initialize for sequence: nLQDQLDHRGDHPLTPGSHYAc[61], unknown mods may exist in spectrum 20240927_SW-KF_S2_PLD_Slot2-41_1_8063_diatracer.527933.527933.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nDLDPQDPHDLTGNc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_PLD_Slot2-41_1_8063_diatracer.528996.528996.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nDRTGRGPGLSGGPPEc[61], unknown mods may exist in spectrum 20240927_SW-KF_S2_PLD_Slot2-41_1_8063_diatracer.532270.532270.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nAVSTDPPHHDHHDEFC[160]LM[147]Pc[61], unknown mods may exist in spectrum 20240927_SW-KF_S2_PLD_Slot2-41_1_8063_diatracer.534466.534466.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nYTTVTPELPTEFSc[61], unknown mods may exist in spectrum 20240927_SW-KF_S2_PLD_Slot2-41_1_8063_diatracer.537020.537020.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nAIRQILSAM[147]NDRPc[61], unknown mods may exist in spectrum 20240927_SW-KF_S2_PLD_Slot2-41_1_8063_diatracer.540108.540108.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nM[147]YEVPELAAIQDGc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_PLD_Slot2-41_1_8063_diatracer.542753.542753.2 [INFO:] Please specify modification and rerun PTMProphet ... ​ [INFO:] processed 33000/44936 spectrum_queries [ERROR:] Cannot initialize for sequence: nNPPGEEAQGC[160]SPSVc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_PLD_Slot2-41_1_8063_diatracer.543441.543441.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nGVITSHSHVEELIGGLLNWDGc[61], unknown mods may exist in spectrum 20240927_SW-KF_S2_PLD_Slot2-41_1_8063_diatracer.543511.543511.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: n[43]SNNGADLTFc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_PLD_Slot2-41_1_8063_diatracer.548598.548598.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nEVVQLASEAAc[61], unknown mods may exist in spectrum 20240927_SW-KF_S2_PLD_Slot2-41_1_8063_diatracer.549617.549617.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nHGSC[160]VETSLc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_PLD_Slot2-41_1_8063_diatracer.551098.551098.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nEVVQLASEAAc[61], unknown mods may exist in spectrum 20240927_SW-KF_S2_PLD_Slot2-41_1_8063_diatracer.552001.552001.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nGLSPLDAPELDGLDQVGQISc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_PLD_Slot2-41_1_8063_diatracer.552950.552950.4 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nGPAVWSGPGAAGGGLGGRc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_PLD_Slot2-41_1_8063_diatracer.553576.553576.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nIAVDTFTLPGc[61], unknown mods may exist in spectrum 20240927_SW-KF_S2_PLD_Slot2-41_1_8063_diatracer.553600.553600.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nEYTDVATGIc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_PLD_Slot2-41_1_8063_diatracer.556520.556520.2 [INFO:] Please specify modification and rerun PTMProphet ... ​ [INFO:] processed 34000/44936 spectrum_queries [ERROR:] Cannot initialize for sequence: nEVVQLASEAAc[61], unknown mods may exist in spectrum 20240927_SW-KF_S2_PLD_Slot2-41_1_8063_diatracer.559147.559147.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nTIGC[160]VFNHQMFLGc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_PLD_Slot2-41_1_8063_diatracer.559438.559438.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nDDASMDRDDNQGEPc[61], unknown mods may exist in spectrum 20240927_SW-KF_S2_PLD_Slot2-41_1_8063_diatracer.560503.560503.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nLHQDAPDLAc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_PLD_Slot2-41_1_8063_diatracer.561629.561629.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nAEPQSLDGVDc[61], unknown mods may exist in spectrum 20240927_SW-KF_S2_PLD_Slot2-41_1_8063_diatracer.561678.561678.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nQC[160]ALC[160]LTYGDDSANc[61], unknown mods may exist in spectrum 20240927_SW-KF_S2_PLD_Slot2-41_1_8063_diatracer.561974.561974.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nKGEAQGSAASAAVAGTAAAc[61], unknown mods may exist in spectrum 20240927_SW-KF_S2_PLD_Slot2-41_1_8063_diatracer.562082.562082.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nGKTDTYFSTSIPSEc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_PLD_Slot2-41_1_8063_diatracer.565480.565480.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nLDGAIRMQPc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_PLD_Slot2-41_1_8063_diatracer.565554.565554.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: n[43]MQSGLAGGGPPAGC[160]ASAc[61], unknown mods may exist in spectrum 20240927_SW-KF_S2_PLD_Slot2-41_1_8063_diatracer.567112.567112.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nTEKMTSTTAEGAGEQc[61], unknown mods may exist in spectrum 20240927_SW-KF_S2_PLD_Slot2-41_1_8063_diatracer.567243.567243.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nASVITQVFHc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_PLD_Slot2-41_1_8063_diatracer.569216.569216.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nPEGGGGGQAAAAAc[61], unknown mods may exist in spectrum 20240927_SW-KF_S2_PLD_Slot2-41_1_8063_diatracer.569685.569685.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nEVVQLASEAAc[61], unknown mods may exist in spectrum 20240927_SW-KF_S2_PLD_Slot2-41_1_8063_diatracer.569874.569874.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nLHQDAPDLAc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_PLD_Slot2-41_1_8063_diatracer.569970.569970.2 [INFO:] Please specify modification and rerun PTMProphet ... ​ [INFO:] processed 35000/44936 spectrum_queries [ERROR:] Cannot initialize for sequence: nQEMAGPPPSVc[61], unknown mods may exist in spectrum 20240927_SW-KF_S2_PLD_Slot2-41_1_8063_diatracer.571990.571990.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nPNSSVAAKGM[147]QDTEEQM[147]Kc[61], unknown mods may exist in spectrum 20240927_SW-KF_S2_PLD_Slot2-41_1_8063_diatracer.577842.577842.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nDEM[147]EKQEEASAAEPVEASc[61], unknown mods may exist in spectrum 20240927_SW-KF_S2_PLD_Slot2-41_1_8063_diatracer.578351.578351.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nC[160]PNEGDPSPSTC[160]SAPSSSLc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_PLD_Slot2-41_1_8063_diatracer.581295.581295.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nPPPAPSLM[147]DESWFVTPPAc[61], unknown mods may exist in spectrum 20240927_SW-KF_S2_PLD_Slot2-41_1_8063_diatracer.582326.582326.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nEYQGFFPVLMDPTHC[160]Pc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_PLD_Slot2-41_1_8063_diatracer.582806.582806.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nPAVSDLDEEFSTGGGGSDTLc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_PLD_Slot2-41_1_8063_diatracer.584789.584789.2 [INFO:] Please specify modification and rerun PTMProphet ... ​ [INFO:] processed 36000/44936 spectrum_queries [ERROR:] Cannot initialize for sequence: nQM[147]LEPDLDVDMGEc[61], unknown mods may exist in spectrum 20240927_SW-KF_S2_PLD_Slot2-41_1_8063_diatracer.597156.597156.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nMFHWQATIM[147]GPISNYMLDNc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_PLD_Slot2-41_1_8063_diatracer.598169.598169.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nFPTYPVPHYSFFc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_PLD_Slot2-41_1_8063_diatracer.598347.598347.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nSGNNSVGAIQC[160]PDSQFEC[160]PDFSTC[160]C[160]VMc[61], unknown mods may exist in spectrum 20240927_SW-KF_S2_PLD_Slot2-41_1_8063_diatracer.601471.601471.4 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nLIADASVPGSDYINAc[61], unknown mods may exist in spectrum 20240927_SW-KF_S2_PLD_Slot2-41_1_8063_diatracer.604057.604057.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nQEDSGGSSSNSSSSSEc[61], unknown mods may exist in spectrum 20240927_SW-KF_S2_PLD_Slot2-41_1_8063_diatracer.606135.606135.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nHSVGGGGAAAPAGQPGGGPc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_PLD_Slot2-41_1_8063_diatracer.607891.607891.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nPSQLEPGPTDTQPSPc[61], unknown mods may exist in spectrum 20240927_SW-KF_S2_PLD_Slot2-41_1_8063_diatracer.610732.610732.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nMIELTEQTTNSNSc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_PLD_Slot2-41_1_8063_diatracer.611086.611086.2 [INFO:] Please specify modification and rerun PTMProphet ... ​ [INFO:] processed 37000/44936 spectrum_queries [ERROR:] Cannot initialize for sequence: nAWTWPDALNIENSDSESWTSc[61], unknown mods may exist in spectrum 20240927_SW-KF_S2_PLD_Slot2-41_1_8063_diatracer.612856.612856.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nC[160]VSTM[147]FSFTGMWc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_PLD_Slot2-41_1_8063_diatracer.613854.613854.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nC[160]KEEVVSTLDAVQc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_PLD_Slot2-41_1_8063_diatracer.616755.616755.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nEQAQLSDANEVM[147]Dc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_PLD_Slot2-41_1_8063_diatracer.619340.619340.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nLEENLQETHSAVLc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_PLD_Slot2-41_1_8063_diatracer.619814.619814.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nVYGTGNGPYC[160]AVMAc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_PLD_Slot2-41_1_8063_diatracer.621845.621845.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nDQPC[160]AAGAPPPEANGAc[61], unknown mods may exist in spectrum 20240927_SW-KF_S2_PLD_Slot2-41_1_8063_diatracer.622263.622263.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nTGQPSAPGDTSVNGPVc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_PLD_Slot2-41_1_8063_diatracer.622543.622543.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nAM[147]SSKGPSASAALSPPc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_PLD_Slot2-41_1_8063_diatracer.625126.625126.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: n[43]MTYVQVLSPSPAMAc[61], unknown mods may exist in spectrum 20240927_SW-KF_S2_PLD_Slot2-41_1_8063_diatracer.625483.625483.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nEYTAEIM[147]FESFNc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_PLD_Slot2-41_1_8063_diatracer.627079.627079.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nLGELQKIFAc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_PLD_Slot2-41_1_8063_diatracer.628943.628943.2 [INFO:] Please specify modification and rerun PTMProphet ... ​ [INFO:] processed 38000/44936 spectrum_queries [ERROR:] Cannot initialize for sequence: nAVNSATGVPTVc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_PLD_Slot2-41_1_8063_diatracer.630137.630137.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nLGELQKIFAc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_PLD_Slot2-41_1_8063_diatracer.630240.630240.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nYLEPNIAGVM[147]C[160]ADGAc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_PLD_Slot2-41_1_8063_diatracer.630479.630479.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nTLGAGSESTDSc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_PLD_Slot2-41_1_8063_diatracer.632951.632951.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nGADGQVGSGEDAc[61], unknown mods may exist in spectrum 20240927_SW-KF_S2_PLD_Slot2-41_1_8063_diatracer.633998.633998.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nGYGTM[147]QVASGQTEVTSc[61], unknown mods may exist in spectrum 20240927_SW-KF_S2_PLD_Slot2-41_1_8063_diatracer.634370.634370.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nFVLPVGATINc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_PLD_Slot2-41_1_8063_diatracer.635792.635792.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nTKFTGTASSIc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_PLD_Slot2-41_1_8063_diatracer.636471.636471.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nTEEYIPYEc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_PLD_Slot2-41_1_8063_diatracer.642585.642585.2 [INFO:] Please specify modification and rerun PTMProphet ... ​ [INFO:] processed 39000/44936 spectrum_queries [ERROR:] Cannot initialize for sequence: nGVPLSVNPVC[160]c[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_PLD_Slot2-41_1_8063_diatracer.645095.645095.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nM[147]TGSAADYNLc[61], unknown mods may exist in spectrum 20240927_SW-KF_S2_PLD_Slot2-41_1_8063_diatracer.648219.648219.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nAM[147]LLTSYLPc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_PLD_Slot2-41_1_8063_diatracer.648574.648574.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nQFGVNSGAGLEQLAVNc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_PLD_Slot2-41_1_8063_diatracer.648948.648948.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nILQDIQEGEc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_PLD_Slot2-41_1_8063_diatracer.649050.649050.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nQQPWQETSLAQDQc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_PLD_Slot2-41_1_8063_diatracer.649462.649462.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nILQDIQEGEc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_PLD_Slot2-41_1_8063_diatracer.651648.651648.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nTPLYSHSPLc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_PLD_Slot2-41_1_8063_diatracer.652163.652163.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nPEM[147]GEEAAAAAc[61], unknown mods may exist in spectrum 20240927_SW-KF_S2_PLD_Slot2-41_1_8063_diatracer.656055.656055.2 [INFO:] Please specify modification and rerun PTMProphet ... ​ [INFO:] processed 40000/44936 spectrum_queries [ERROR:] Cannot initialize for sequence: nDAGPGRSPANSAc[61], unknown mods may exist in spectrum 20240927_SW-KF_S2_PLD_Slot2-41_1_8063_diatracer.657050.657050.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nMDDAVETTATc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_PLD_Slot2-41_1_8063_diatracer.657116.657116.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nAAVYVGSFSWESM[147]MWWSc[61], unknown mods may exist in spectrum 20240927_SW-KF_S2_PLD_Slot2-41_1_8063_diatracer.671300.671300.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nFDIQQGGAVLAM[147]WPVGGSGDc[61], unknown mods may exist in spectrum 20240927_SW-KF_S2_PLD_Slot2-41_1_8063_diatracer.676650.676650.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nSPYHC[160]SFPM[147]QGDAc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_PLD_Slot2-41_1_8063_diatracer.677134.677134.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nSPYHC[160]SFPM[147]QGDAc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_PLD_Slot2-41_1_8063_diatracer.677135.677135.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nSPYHC[160]SFPM[147]QGDAc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_PLD_Slot2-41_1_8063_diatracer.678438.678438.2 [INFO:] Please specify modification and rerun PTMProphet ... ​ [INFO:] processed 41000/44936 spectrum_queries [ERROR:] Cannot initialize for sequence: nSPYHC[160]SFPM[147]QGDAc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_PLD_Slot2-41_1_8063_diatracer.681048.681048.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nSPYHC[160]SFPM[147]QGDAc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_PLD_Slot2-41_1_8063_diatracer.682350.682350.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nSPYHC[160]SFPM[147]QGDAc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_PLD_Slot2-41_1_8063_diatracer.682353.682353.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nM[147]TSPVYGTDMMVGIc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_PLD_Slot2-41_1_8063_diatracer.685281.685281.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nSPYHC[160]SFPM[147]QGDAc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_PLD_Slot2-41_1_8063_diatracer.687566.687566.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nSPYHC[160]SFPM[147]QGDAc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_PLD_Slot2-41_1_8063_diatracer.687568.687568.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nM[147]LIPFSNPRVLPGPc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_PLD_Slot2-41_1_8063_diatracer.695335.695335.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nSPYHC[160]SFPM[147]QGDAc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_PLD_Slot2-41_1_8063_diatracer.695383.695383.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nPSTLQAASTPQAEEDWTC[160]TILc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_PLD_Slot2-41_1_8063_diatracer.697016.697016.3 [INFO:] Please specify modification and rerun PTMProphet ... ​ [INFO:] processed 42000/44936 spectrum_queries [ERROR:] Cannot initialize for sequence: nGC[160]GVGAEGSSTSVEDLc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_PLD_Slot2-41_1_8063_diatracer.698414.698414.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nEFSADQM[147]SENTDQc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_PLD_Slot2-41_1_8063_diatracer.699501.699501.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nSPYHC[160]SFPM[147]QGDAc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_PLD_Slot2-41_1_8063_diatracer.700594.700594.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nM[147]LIPFSNPRVLPGPc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_PLD_Slot2-41_1_8063_diatracer.701846.701846.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nSPYHC[160]SFPM[147]QGDAc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_PLD_Slot2-41_1_8063_diatracer.701892.701892.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nIC[160]MIC[160]SVPGM[147]M[147]SFc[61], unknown mods may exist in spectrum 20240927_SW-KF_S2_PLD_Slot2-41_1_8063_diatracer.703437.703437.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nSFLVQAMTEHDQSVc[61], unknown mods may exist in spectrum 20240927_SW-KF_S2_PLD_Slot2-41_1_8063_diatracer.704295.704295.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nWPWVHIYEM[147]PGAGRGSAQGC[160]Tc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_PLD_Slot2-41_1_8063_diatracer.705766.705766.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nGM[147]GLGFTSSMRGMDAVc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_PLD_Slot2-41_1_8063_diatracer.708554.708554.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nEISSAAAHSQPFAWKc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_PLD_Slot2-41_1_8063_diatracer.708649.708649.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nPIGPDDAIDALSSDFTc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_PLD_Slot2-41_1_8063_diatracer.708694.708694.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nDLNVLTPTGFc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_PLD_Slot2-41_1_8063_diatracer.710504.710504.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nLC[160]HITSGEALc[61], unknown mods may exist in spectrum 20240927_SW-KF_S2_PLD_Slot2-41_1_8063_diatracer.711541.711541.2 [INFO:] Please specify modification and rerun PTMProphet ... ​ [INFO:] processed 43000/44936 spectrum_queries [ERROR:] Cannot initialize for sequence: nLGNWSAM[147]PSC[160]c[61], unknown mods may exist in spectrum 20240927_SW-KF_S2_PLD_Slot2-41_1_8063_diatracer.713862.713862.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nYLTFGIPPPVc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_PLD_Slot2-41_1_8063_diatracer.715657.715657.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nYLTFGIPPPVc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_PLD_Slot2-41_1_8063_diatracer.717089.717089.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nYLTFGIPPPVc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_PLD_Slot2-41_1_8063_diatracer.718511.718511.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nSALASGHSIEEc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_PLD_Slot2-41_1_8063_diatracer.720987.720987.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: n[43]NSSPAGTPSPQc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_PLD_Slot2-41_1_8063_diatracer.723433.723433.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nDEEEDMSLDc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_PLD_Slot2-41_1_8063_diatracer.724838.724838.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nENLELNGSILSGQPSSc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_PLD_Slot2-41_1_8063_diatracer.725879.725879.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nSLNTHDVAAPLSPHSQc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_PLD_Slot2-41_1_8063_diatracer.726573.726573.3 [INFO:] Please specify modification and rerun PTMProphet ... ​ [INFO:] processed 44000/44936 spectrum_queries [ERROR:] Cannot initialize for sequence: nVELAEALSVHc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_PLD_Slot2-41_1_8063_diatracer.727432.727432.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nIIQAGFHNMVc[61], unknown mods may exist in spectrum 20240927_SW-KF_S2_PLD_Slot2-41_1_8063_diatracer.729162.729162.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nASIDAAAAAAATSEPPQHc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_PLD_Slot2-41_1_8063_diatracer.729364.729364.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nTGSGGAGATAAADAc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_PLD_Slot2-41_1_8063_diatracer.730331.730331.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nIIQAGFHNMVc[61], unknown mods may exist in spectrum 20240927_SW-KF_S2_PLD_Slot2-41_1_8063_diatracer.733447.733447.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nTLSAPPSQPPSc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_PLD_Slot2-41_1_8063_diatracer.733576.733576.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nEVMLENYINc[61], unknown mods may exist in spectrum 20240927_SW-KF_S2_PLD_Slot2-41_1_8063_diatracer.734955.734955.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nIIQAGFHNMVc[61], unknown mods may exist in spectrum 20240927_SW-KF_S2_PLD_Slot2-41_1_8063_diatracer.735076.735076.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nYVFRDVVQITC[160]LDGc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_PLD_Slot2-41_1_8063_diatracer.735372.735372.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nM[147]GPPPGHNAAMALSQYc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_PLD_Slot2-41_1_8063_diatracer.737466.737466.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nPPSTDARAHVHHGERc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_PLD_Slot2-41_1_8063_diatracer.737783.737783.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nDDDILLNLVGC[160]ENSVTEGQEc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_PLD_Slot2-41_1_8063_diatracer.738890.738890.4 [INFO:] Please specify modification and rerun PTMProphet ... [INFO:] done ... [INFO:] Computing EM Models ... [INFO:] Iterating PTM Model: ....5...done [INFO:] done ... [INFO:] done ... [INFO:] Creating 1 threads [INFO:] Wait for threads to finish ... [INFO:] Reading file interact-20240927_SW-KF_S2_PLD_Slot2-41_1_8063_diatracer.pep.xml ... [ERROR:] Cannot initialize for sequence: nFTVDSFGNYASC[160]GQIDFSc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_PLD_Slot2-41_1_8063_diatracer.03617.03617.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nEGYSAGPTSPNFSMSGYQAAc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_PLD_Slot2-41_1_8063_diatracer.14033.14033.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nQVGQTMPMVPPLDFTM[147]NAASVEc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_PLD_Slot2-41_1_8063_diatracer.17563.17563.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nAGSQPGGVEM[147]VGTSDWC[160]ALGASC[160]Sc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_PLD_Slot2-41_1_8063_diatracer.18032.18032.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nAEALLAMAEAEKGSNDc[61], unknown mods may exist in spectrum 20240927_SW-KF_S2_PLD_Slot2-41_1_8063_diatracer.18043.18043.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nVD[158]LFGVSAE[172]FKNVDc[61], unknown mods may exist in spectrum 20240927_SW-KF_S2_PLD_Slot2-41_1_8063_diatracer.19519.19519.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nAEALLAMAEAEKGSNDc[61], unknown mods may exist in spectrum 20240927_SW-KF_S2_PLD_Slot2-41_1_8063_diatracer.21881.21881.2 [INFO:] Please specify modification and rerun PTMProphet ... ​ [INFO:] written 1000/44936 spectrum_queries [ERROR:] Cannot initialize for sequence: nMDSFLSSVADM[147]VQRc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_PLD_Slot2-41_1_8063_diatracer.25062.25062.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nLSGSNSNGSC[160]YNPC[160]Sc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_PLD_Slot2-41_1_8063_diatracer.26297.26297.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nMDSFLSSVADM[147]VQRc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_PLD_Slot2-41_1_8063_diatracer.31461.31461.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nNGMGPGGPGGPGGAAGADDAc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_PLD_Slot2-41_1_8063_diatracer.34869.34869.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nGPGAAPGGAVGGAGRGELEc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_PLD_Slot2-41_1_8063_diatracer.36082.36082.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nM[147]GGGIWWALC[160]AILNVGLTAC[160]YFc[61], unknown mods may exist in spectrum 20240927_SW-KF_S2_PLD_Slot2-41_1_8063_diatracer.38913.38913.3 [INFO:] Please specify modification and rerun PTMProphet ... ​ [INFO:] written 2000/44936 spectrum_queries [ERROR:] Cannot initialize for sequence: nAEALLAMAEAEKGSNDc[61], unknown mods may exist in spectrum 20240927_SW-KF_S2_PLD_Slot2-41_1_8063_diatracer.44909.44909.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nVVATMEDMSHDQDSc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_PLD_Slot2-41_1_8063_diatracer.45840.45840.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nQLQC[160]SPREGPASTPMSSAAPQAPAc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_PLD_Slot2-41_1_8063_diatracer.46702.46702.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nLC[160]INIITSVHc[61], unknown mods may exist in spectrum 20240927_SW-KF_S2_PLD_Slot2-41_1_8063_diatracer.47428.47428.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nLC[160]INIITSVHc[61], unknown mods may exist in spectrum 20240927_SW-KF_S2_PLD_Slot2-41_1_8063_diatracer.48883.48883.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nPASARGNGPAAAAc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_PLD_Slot2-41_1_8063_diatracer.50012.50012.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nVLVTGSVGGLM[147]Ac[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_PLD_Slot2-41_1_8063_diatracer.50120.50120.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nPGLQRQESVFc[61], unknown mods may exist in spectrum 20240927_SW-KF_S2_PLD_Slot2-41_1_8063_diatracer.50170.50170.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nRSSTFQLGYDc[61], unknown mods may exist in spectrum 20240927_SW-KF_S2_PLD_Slot2-41_1_8063_diatracer.52091.52091.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nDSPQDEGC[160]VQKEGNFPc[61], unknown mods may exist in spectrum 20240927_SW-KF_S2_PLD_Slot2-41_1_8063_diatracer.53838.53838.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nELSPDEAC[160]PAAc[61], unknown mods may exist in spectrum 20240927_SW-KF_S2_PLD_Slot2-41_1_8063_diatracer.54563.54563.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nDALVFVLIDEc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_PLD_Slot2-41_1_8063_diatracer.54911.54911.2 [INFO:] Please specify modification and rerun PTMProphet ... ​ [INFO:] written 3000/44936 spectrum_queries [ERROR:] Cannot initialize for sequence: nQHQHTGPGHQc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_PLD_Slot2-41_1_8063_diatracer.57626.57626.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nVEQAAAAASPSPSSFGSTVPC[160]VSKc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_PLD_Slot2-41_1_8063_diatracer.57684.57684.4 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nVEQAAAAASPSPSSFGSTVPC[160]VSKc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_PLD_Slot2-41_1_8063_diatracer.59135.59135.4 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nSVSLNLLQTHc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_PLD_Slot2-41_1_8063_diatracer.61552.61552.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nLC[160]INIITSVHc[61], unknown mods may exist in spectrum 20240927_SW-KF_S2_PLD_Slot2-41_1_8063_diatracer.63429.63429.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nMPANATMTSPYc[61], unknown mods may exist in spectrum 20240927_SW-KF_S2_PLD_Slot2-41_1_8063_diatracer.65252.65252.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nMTDPASWEGGFSNTYNc[61], unknown mods may exist in spectrum 20240927_SW-KF_S2_PLD_Slot2-41_1_8063_diatracer.67708.67708.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nSFM[147]ISADMAHc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_PLD_Slot2-41_1_8063_diatracer.67769.67769.2 [INFO:] Please specify modification and rerun PTMProphet ... ​ [INFO:] written 4000/44936 spectrum_queries [ERROR:] Cannot initialize for sequence: nAIEEPTNQLLc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_PLD_Slot2-41_1_8063_diatracer.70808.70808.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nLGLPC[160]LAPGPFc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_PLD_Slot2-41_1_8063_diatracer.71190.71190.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nPDQC[160]C[160]VAPGGEc[61], unknown mods may exist in spectrum 20240927_SW-KF_S2_PLD_Slot2-41_1_8063_diatracer.71283.71283.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nVDPSAISGSLDEc[61], unknown mods may exist in spectrum 20240927_SW-KF_S2_PLD_Slot2-41_1_8063_diatracer.72797.72797.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nAKDNGFEPEC[160]c[61], unknown mods may exist in spectrum 20240927_SW-KF_S2_PLD_Slot2-41_1_8063_diatracer.75045.75045.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nLAAGQGAGAGQGGGAGGGLGGSGAc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_PLD_Slot2-41_1_8063_diatracer.76892.76892.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nAIEEPTNQLLc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_PLD_Slot2-41_1_8063_diatracer.78079.78079.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nPDQC[160]C[160]VAPGGEc[61], unknown mods may exist in spectrum 20240927_SW-KF_S2_PLD_Slot2-41_1_8063_diatracer.80008.80008.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nPSHPQGAc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_PLD_Slot2-41_1_8063_diatracer.81352.81352.2 [INFO:] Please specify modification and rerun PTMProphet ... ​ [INFO:] written 5000/44936 spectrum_queries [ERROR:] Cannot initialize for sequence: nGADTGPAAHGYSSHGGHTQTRc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_PLD_Slot2-41_1_8063_diatracer.85416.85416.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nSNDYLASPTTEM[147]TSPGLTPSc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_PLD_Slot2-41_1_8063_diatracer.94640.94640.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nGGGPEESGGGAGSAAAGPQEc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_PLD_Slot2-41_1_8063_diatracer.102945.102945.2 [INFO:] Please specify modification and rerun PTMProphet ... ​ [INFO:] written 6000/44936 spectrum_queries [ERROR:] Cannot initialize for sequence: nGGSAIGVLETVDQASTNc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_PLD_Slot2-41_1_8063_diatracer.108455.108455.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nEGAGEATSAPAM[147]DAHSGVc[61], unknown mods may exist in spectrum 20240927_SW-KF_S2_PLD_Slot2-41_1_8063_diatracer.108712.108712.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nQQLAAEPVPTGFFNMc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_PLD_Slot2-41_1_8063_diatracer.111602.111602.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nGGSAIGVLETVDQASTNc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_PLD_Slot2-41_1_8063_diatracer.112041.112041.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nNESNSAGSPADM[147]ELDSGc[61], unknown mods may exist in spectrum 20240927_SW-KF_S2_PLD_Slot2-41_1_8063_diatracer.112844.112844.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nIPLLAMNGILKTDPDc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_PLD_Slot2-41_1_8063_diatracer.117858.117858.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nLGEDKSTLFTATSM[147]Lc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_PLD_Slot2-41_1_8063_diatracer.118341.118341.2 [INFO:] Please specify modification and rerun PTMProphet ... ​ [INFO:] written 7000/44936 spectrum_queries [ERROR:] Cannot initialize for sequence: nQLEDADIQGDQc[61], unknown mods may exist in spectrum 20240927_SW-KF_S2_PLD_Slot2-41_1_8063_diatracer.125758.125758.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nSKDKATIIQIPVQNFEc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_PLD_Slot2-41_1_8063_diatracer.125841.125841.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nSTETNTAVQALIDNMAESc[61], unknown mods may exist in spectrum 20240927_SW-KF_S2_PLD_Slot2-41_1_8063_diatracer.127682.127682.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nM[147]AQTLANFYQc[61], unknown mods may exist in spectrum 20240927_SW-KF_S2_PLD_Slot2-41_1_8063_diatracer.127936.127936.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nYLDDEYAEITEYGGFc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_PLD_Slot2-41_1_8063_diatracer.129278.129278.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nGLPGPQGPTGPSGPc[61], unknown mods may exist in spectrum 20240927_SW-KF_S2_PLD_Slot2-41_1_8063_diatracer.129818.129818.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nPSSDHSGSTTPSc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_PLD_Slot2-41_1_8063_diatracer.130670.130670.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nETTTSSHSQAEc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_PLD_Slot2-41_1_8063_diatracer.131196.131196.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nEEVAAAATPGPGVc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_PLD_Slot2-41_1_8063_diatracer.133768.133768.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nETTTSSHSQAEc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_PLD_Slot2-41_1_8063_diatracer.136956.136956.2 [INFO:] Please specify modification and rerun PTMProphet ... ​ [INFO:] written 8000/44936 spectrum_queries [ERROR:] Cannot initialize for sequence: nVQFNFLQLWc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_PLD_Slot2-41_1_8063_diatracer.139036.139036.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nDM[147]KLVLIGHSIc[61], unknown mods may exist in spectrum 20240927_SW-KF_S2_PLD_Slot2-41_1_8063_diatracer.139073.139073.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nGHQADSGSHHEc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_PLD_Slot2-41_1_8063_diatracer.139262.139262.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nAAGAGGGAAAAM[147]AAAAc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_PLD_Slot2-41_1_8063_diatracer.139689.139689.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nSLEWIEGNQLQVTVYDc[61], unknown mods may exist in spectrum 20240927_SW-KF_S2_PLD_Slot2-41_1_8063_diatracer.140645.140645.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nSTETNTAVQALIDNMAESc[61], unknown mods may exist in spectrum 20240927_SW-KF_S2_PLD_Slot2-41_1_8063_diatracer.142065.142065.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nVYYVVLVIWGEMC[160]VSc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_PLD_Slot2-41_1_8063_diatracer.142836.142836.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nC[160]GSLHGDVSASNc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_PLD_Slot2-41_1_8063_diatracer.143415.143415.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nC[160]ADC[160]GLNVHKc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_PLD_Slot2-41_1_8063_diatracer.144177.144177.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nLVM[147]GPPLIGPPRLAWWc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_PLD_Slot2-41_1_8063_diatracer.145855.145855.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nQTMSHDSQAVASSLQSC[160]c[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_PLD_Slot2-41_1_8063_diatracer.146154.146154.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nC[160]GSLHGDVSASNc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_PLD_Slot2-41_1_8063_diatracer.146295.146295.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nLAGAFSSDTSFFc[61], unknown mods may exist in spectrum 20240927_SW-KF_S2_PLD_Slot2-41_1_8063_diatracer.146342.146342.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nM[147]PANATM[147]TSPYc[61], unknown mods may exist in spectrum 20240927_SW-KF_S2_PLD_Slot2-41_1_8063_diatracer.146719.146719.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nDEEDLADEM[147]IC[160]ITTLc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_PLD_Slot2-41_1_8063_diatracer.147910.147910.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nGDGGGAGGGGGGGGSGGGGSGGGGGGGSSc[61], unknown mods may exist in spectrum 20240927_SW-KF_S2_PLD_Slot2-41_1_8063_diatracer.148605.148605.3 [INFO:] Please specify modification and rerun PTMProphet ... ​ [INFO:] written 9000/44936 spectrum_queries [ERROR:] Cannot initialize for sequence: nSASATSPAPSASTVc[61], unknown mods may exist in spectrum 20240927_SW-KF_S2_PLD_Slot2-41_1_8063_diatracer.151684.151684.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nEQEQEGARDEc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_PLD_Slot2-41_1_8063_diatracer.155938.155938.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nSHPFFTPVDWAELM[147]Rc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_PLD_Slot2-41_1_8063_diatracer.156410.156410.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nLC[160]INIITSVHc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_PLD_Slot2-41_1_8063_diatracer.156876.156876.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nDELLC[160]SSNPLSc[61], unknown mods may exist in spectrum 20240927_SW-KF_S2_PLD_Slot2-41_1_8063_diatracer.157458.157458.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nAGGPPRNQc[61], unknown mods may exist in spectrum 20240927_SW-KF_S2_PLD_Slot2-41_1_8063_diatracer.161986.161986.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nEWAHPSHHFc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_PLD_Slot2-41_1_8063_diatracer.162119.162119.3 [INFO:] Please specify modification and rerun PTMProphet ... ​ [INFO:] written 10000/44936 spectrum_queries [ERROR:] Cannot initialize for sequence: nFQQLVSLAGEEc[61], unknown mods may exist in spectrum 20240927_SW-KF_S2_PLD_Slot2-41_1_8063_diatracer.164279.164279.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nELSEPGTAIDc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_PLD_Slot2-41_1_8063_diatracer.167749.167749.1 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nGPGPSQGQLGGPGPEPC[160]EASMGGAc[61], unknown mods may exist in spectrum 20240927_SW-KF_S2_PLD_Slot2-41_1_8063_diatracer.168271.168271.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nPGWRTATLWTSLGTAGC[160]WGSc[61], unknown mods may exist in spectrum 20240927_SW-KF_S2_PLD_Slot2-41_1_8063_diatracer.170754.170754.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nDHLYKEQC[160]GSGGSDRc[61], unknown mods may exist in spectrum 20240927_SW-KF_S2_PLD_Slot2-41_1_8063_diatracer.176625.176625.2 [INFO:] Please specify modification and rerun PTMProphet ... ​ [INFO:] written 11000/44936 spectrum_queries [ERROR:] Cannot initialize for sequence: nASSGAASDSSM[147]AATSDEATc[61], unknown mods may exist in spectrum 20240927_SW-KF_S2_PLD_Slot2-41_1_8063_diatracer.184928.184928.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nNTSLPLHVLFMTSPLc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_PLD_Slot2-41_1_8063_diatracer.186698.186698.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nLTTELQGQQIALEEEc[61], unknown mods may exist in spectrum 20240927_SW-KF_S2_PLD_Slot2-41_1_8063_diatracer.192138.192138.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nPNPLETQSEQGQSLSLFM[147]LSSILM[147]FFSNTQAc[61], unknown mods may exist in spectrum 20240927_SW-KF_S2_PLD_Slot2-41_1_8063_diatracer.193615.193615.4 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nHHPDYPC[160]IEFAEPEc[61], unknown mods may exist in spectrum 20240927_SW-KF_S2_PLD_Slot2-41_1_8063_diatracer.194026.194026.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nHGNLHSM[147]ALQAQNGDAc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_PLD_Slot2-41_1_8063_diatracer.198136.198136.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nDGNITLNPSQTSVM[147]Yc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_PLD_Slot2-41_1_8063_diatracer.200034.200034.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nNLLTGETEADPEM[147]IKc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_PLD_Slot2-41_1_8063_diatracer.200327.200327.2 [INFO:] Please specify modification and rerun PTMProphet ... ​ [INFO:] written 12000/44936 spectrum_queries [ERROR:] Cannot initialize for sequence: nHWGASPSTGAEEc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_PLD_Slot2-41_1_8063_diatracer.202941.202941.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nPDVSSGRC[160]EGC[160]c[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_PLD_Slot2-41_1_8063_diatracer.202960.202960.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nVEEEME[172]ELNGDEIALWc[61], unknown mods may exist in spectrum 20240927_SW-KF_S2_PLD_Slot2-41_1_8063_diatracer.204867.204867.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nVEEEME[172]ELNGDEIALWc[61], unknown mods may exist in spectrum 20240927_SW-KF_S2_PLD_Slot2-41_1_8063_diatracer.206322.206322.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nLSLLEESSFGAEVGAGAGAASc[61], unknown mods may exist in spectrum 20240927_SW-KF_S2_PLD_Slot2-41_1_8063_diatracer.207334.207334.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nM[147]AAGWLTTWSQNSVTFQc[61], unknown mods may exist in spectrum 20240927_SW-KF_S2_PLD_Slot2-41_1_8063_diatracer.209270.209270.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nPC[160]GSSSWASSEAc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_PLD_Slot2-41_1_8063_diatracer.210215.210215.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nHM[147]AQM[147]ANQDPESIMFNc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_PLD_Slot2-41_1_8063_diatracer.213347.213347.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nIHFSVEATIETc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_PLD_Slot2-41_1_8063_diatracer.213727.213727.2 [INFO:] Please specify modification and rerun PTMProphet ... ​ [INFO:] written 13000/44936 spectrum_queries [ERROR:] Cannot initialize for sequence: nSVM[147]LENYSNLVc[61], unknown mods may exist in spectrum 20240927_SW-KF_S2_PLD_Slot2-41_1_8063_diatracer.216596.216596.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nTPTSGQSVSTC[160]Sc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_PLD_Slot2-41_1_8063_diatracer.219995.219995.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nPLIGTVLAMDPDAARHSIGc[61], unknown mods may exist in spectrum 20240927_SW-KF_S2_PLD_Slot2-41_1_8063_diatracer.223531.223531.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nSFYLALFVWTLPFM[147]Dc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_PLD_Slot2-41_1_8063_diatracer.224666.224666.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nSYM[147]RFPYEEc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_PLD_Slot2-41_1_8063_diatracer.228073.228073.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nDHSVAESLNYVc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_PLD_Slot2-41_1_8063_diatracer.229426.229426.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nSFSSDSSDSSHPc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_PLD_Slot2-41_1_8063_diatracer.229510.229510.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nPSSSGPASPGPYGGTAGSALSC[160]c[61], unknown mods may exist in spectrum 20240927_SW-KF_S2_PLD_Slot2-41_1_8063_diatracer.230053.230053.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nM[147]PAEEPGATGGPQc[61], unknown mods may exist in spectrum 20240927_SW-KF_S2_PLD_Slot2-41_1_8063_diatracer.230113.230113.2 [INFO:] Please specify modification and rerun PTMProphet ... ​ [INFO:] written 14000/44936 spectrum_queries [ERROR:] Cannot initialize for sequence: nDHSVAESLNYVc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_PLD_Slot2-41_1_8063_diatracer.233788.233788.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nSSGGGGGAAc[61], unknown mods may exist in spectrum 20240927_SW-KF_S2_PLD_Slot2-41_1_8063_diatracer.234033.234033.1 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nPIEENLVc[61], unknown mods may exist in spectrum 20240927_SW-KF_S2_PLD_Slot2-41_1_8063_diatracer.235050.235050.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nAVSTPNLSc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_PLD_Slot2-41_1_8063_diatracer.235256.235256.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nPPSPAHSREVASc[61], unknown mods may exist in spectrum 20240927_SW-KF_S2_PLD_Slot2-41_1_8063_diatracer.235542.235542.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nLFHVVSLc[61], unknown mods may exist in spectrum 20240927_SW-KF_S2_PLD_Slot2-41_1_8063_diatracer.236011.236011.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nQLGGGWGIc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_PLD_Slot2-41_1_8063_diatracer.238150.238150.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nGWVAGNASc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_PLD_Slot2-41_1_8063_diatracer.239788.239788.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nM[147]GLAMGGGGc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_PLD_Slot2-41_1_8063_diatracer.240341.240341.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nGGAGPSAVTSc[61], unknown mods may exist in spectrum 20240927_SW-KF_S2_PLD_Slot2-41_1_8063_diatracer.241723.241723.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nGGGYNVFVc[61], unknown mods may exist in spectrum 20240927_SW-KF_S2_PLD_Slot2-41_1_8063_diatracer.241829.241829.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nVHSHSAEc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_PLD_Slot2-41_1_8063_diatracer.242284.242284.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nVHSHSAEc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_PLD_Slot2-41_1_8063_diatracer.243246.243246.2 [INFO:] Please specify modification and rerun PTMProphet ... ​ [INFO:] written 15000/44936 spectrum_queries [ERROR:] Cannot initialize for sequence: nLFHVVSLc[61], unknown mods may exist in spectrum 20240927_SW-KF_S2_PLD_Slot2-41_1_8063_diatracer.243800.243800.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nETGKLTHc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_PLD_Slot2-41_1_8063_diatracer.245306.245306.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nLSC[160]TM[147]IVPVNSQYTTDWATc[61], unknown mods may exist in spectrum 20240927_SW-KF_S2_PLD_Slot2-41_1_8063_diatracer.250734.250734.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nIYRTEMAPGASQGDQQc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_PLD_Slot2-41_1_8063_diatracer.260361.260361.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nQTDLEVMLSVDSC[160]HHc[61], unknown mods may exist in spectrum 20240927_SW-KF_S2_PLD_Slot2-41_1_8063_diatracer.262019.262019.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nLGGEIVSADSMQELASFc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_PLD_Slot2-41_1_8063_diatracer.262780.262780.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nNILVSDM[147]EM[147]NEQQEc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_PLD_Slot2-41_1_8063_diatracer.266367.266367.2 [INFO:] Please specify modification and rerun PTMProphet ... ​ [INFO:] written 16000/44936 spectrum_queries [ERROR:] Cannot initialize for sequence: nLGGEIVSADSMQELASFc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_PLD_Slot2-41_1_8063_diatracer.267428.267428.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nGVAEVTVDVVGYLSM[147]SNc[61], unknown mods may exist in spectrum 20240927_SW-KF_S2_PLD_Slot2-41_1_8063_diatracer.271007.271007.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nGGGNGNGNAPPGGTGPAAPDEc[61], unknown mods may exist in spectrum 20240927_SW-KF_S2_PLD_Slot2-41_1_8063_diatracer.272361.272361.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nLQEFAVQALM[147]NLEDKc[61], unknown mods may exist in spectrum 20240927_SW-KF_S2_PLD_Slot2-41_1_8063_diatracer.278185.278185.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nEALSGVTSHGLSC[160]c[61], unknown mods may exist in spectrum 20240927_SW-KF_S2_PLD_Slot2-41_1_8063_diatracer.281979.281979.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nIAIGQTDNIIYVYKIGEDc[61], unknown mods may exist in spectrum 20240927_SW-KF_S2_PLD_Slot2-41_1_8063_diatracer.283800.283800.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nQAPEENQPTNESLQEEWc[61], unknown mods may exist in spectrum 20240927_SW-KF_S2_PLD_Slot2-41_1_8063_diatracer.285402.285402.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nQM[147]LDDIPEDNTc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_PLD_Slot2-41_1_8063_diatracer.285497.285497.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nLWHVC[160]GHAVPLLLGGPGEEc[61], unknown mods may exist in spectrum 20240927_SW-KF_S2_PLD_Slot2-41_1_8063_diatracer.285619.285619.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nLETVVQMQQGD[158]QYSDISLTQTAMc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_PLD_Slot2-41_1_8063_diatracer.286187.286187.4 [INFO:] Please specify modification and rerun PTMProphet ... ​ [INFO:] written 17000/44936 spectrum_queries [ERROR:] Cannot initialize for sequence: nWDVPGEPESLEAc[61], unknown mods may exist in spectrum 20240927_SW-KF_S2_PLD_Slot2-41_1_8063_diatracer.292130.292130.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nIAIGQTDNIIYVYKIGEDc[61], unknown mods may exist in spectrum 20240927_SW-KF_S2_PLD_Slot2-41_1_8063_diatracer.292340.292340.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nIM[147]IFGSFM[147]GNDc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_PLD_Slot2-41_1_8063_diatracer.298647.298647.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nSSVHSAPPLHESMALEHFc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_PLD_Slot2-41_1_8063_diatracer.299362.299362.3 [INFO:] Please specify modification and rerun PTMProphet ... ​ [INFO:] written 18000/44936 spectrum_queries [ERROR:] Cannot initialize for sequence: nAKGEIPEVAFM[147]Kc[61], unknown mods may exist in spectrum 20240927_SW-KF_S2_PLD_Slot2-41_1_8063_diatracer.300889.300889.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nSVNVM[147]TEIQNLQQIDFSc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_PLD_Slot2-41_1_8063_diatracer.305099.305099.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nFSPLM[147]TAAGM[147]ISc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_PLD_Slot2-41_1_8063_diatracer.307071.307071.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nGVISPNFSFM[147]GQLLQFETQVLC[160]Hc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_PLD_Slot2-41_1_8063_diatracer.307991.307991.4 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nFSLTMYGDENEc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_PLD_Slot2-41_1_8063_diatracer.308261.308261.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nPGTSLFSWHPVFM[147]ALADVc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_PLD_Slot2-41_1_8063_diatracer.313734.313734.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nFSLTMYGDENEc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_PLD_Slot2-41_1_8063_diatracer.313938.313938.2 [INFO:] Please specify modification and rerun PTMProphet ... ​ [INFO:] written 19000/44936 spectrum_queries [ERROR:] Cannot initialize for sequence: nSISLHKSGc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_PLD_Slot2-41_1_8063_diatracer.314984.314984.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nLM[147]GVETVVc[61], unknown mods may exist in spectrum 20240927_SW-KF_S2_PLD_Slot2-41_1_8063_diatracer.315558.315558.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nEDRSASSGc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_PLD_Slot2-41_1_8063_diatracer.316766.316766.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nRADDLHTSLVDGc[61], unknown mods may exist in spectrum 20240927_SW-KF_S2_PLD_Slot2-41_1_8063_diatracer.317431.317431.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nLLYPVLC[160]c[61], unknown mods may exist in spectrum 20240927_SW-KF_S2_PLD_Slot2-41_1_8063_diatracer.318381.318381.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nLLYPVLC[160]c[61], unknown mods may exist in spectrum 20240927_SW-KF_S2_PLD_Slot2-41_1_8063_diatracer.320343.320343.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nSSPTGEGAAAc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_PLD_Slot2-41_1_8063_diatracer.320498.320498.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nLPC[160]YSSTSWISc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_PLD_Slot2-41_1_8063_diatracer.321070.321070.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nEEAVGTATAc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_PLD_Slot2-41_1_8063_diatracer.321783.321783.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nSAVC[160]IHQc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_PLD_Slot2-41_1_8063_diatracer.322630.322630.2 [INFO:] Please specify modification and rerun PTMProphet ... ​ [INFO:] written 20000/44936 spectrum_queries [ERROR:] Cannot initialize for sequence: nSHQNLELPQALPSPEDc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_PLD_Slot2-41_1_8063_diatracer.326419.326419.4 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nDLPPAEPAAc[61], unknown mods may exist in spectrum 20240927_SW-KF_S2_PLD_Slot2-41_1_8063_diatracer.328994.328994.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nNNLSFIETSALD[158]STNVEEAFc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_PLD_Slot2-41_1_8063_diatracer.329439.329439.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nNNLSFIETSALDSTNVE[172]EAFc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_PLD_Slot2-41_1_8063_diatracer.330834.330834.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nNNLSFIETSALD[158]STNVEEAFc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_PLD_Slot2-41_1_8063_diatracer.331391.331391.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nDFYPQGQPPPPSAAEPVTEESc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_PLD_Slot2-41_1_8063_diatracer.331902.331902.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nNNLSFIETSALD[158]STNVEEAFc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_PLD_Slot2-41_1_8063_diatracer.335012.335012.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nHEMVEESPGASSVLHFc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_PLD_Slot2-41_1_8063_diatracer.336732.336732.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nAC[160]LSQEVNEHDPENEc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_PLD_Slot2-41_1_8063_diatracer.343142.343142.2 [INFO:] Please specify modification and rerun PTMProphet ... ​ [INFO:] written 21000/44936 spectrum_queries [ERROR:] Cannot initialize for sequence: nQLLVPHNPGTC[160]HWLLc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_PLD_Slot2-41_1_8063_diatracer.345679.345679.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nGDLHLPDHHLSVPSSADHPAQHPSFPc[61], unknown mods may exist in spectrum 20240927_SW-KF_S2_PLD_Slot2-41_1_8063_diatracer.346124.346124.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nKDAEEEESELTSWM[147]Ac[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_PLD_Slot2-41_1_8063_diatracer.347401.347401.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nTFDQLDAISSLPTPSDIFVSYSTFPc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_PLD_Slot2-41_1_8063_diatracer.348133.348133.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nSLPEGM[147]GPGESGQPPPAC[160]c[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_PLD_Slot2-41_1_8063_diatracer.348754.348754.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nSLPEGM[147]GPGESGQPPPAC[160]c[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_PLD_Slot2-41_1_8063_diatracer.352960.352960.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nLSDSM[147]MSALDLSGNADDGVGDc[61], unknown mods may exist in spectrum 20240927_SW-KF_S2_PLD_Slot2-41_1_8063_diatracer.360550.360550.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nAETGNLELEWGGSc[61], unknown mods may exist in spectrum 20240927_SW-KF_S2_PLD_Slot2-41_1_8063_diatracer.362924.362924.2 [INFO:] Please specify modification and rerun PTMProphet ... ​ [INFO:] written 22000/44936 spectrum_queries [ERROR:] Cannot initialize for sequence: nNYQVTNSM[147]FGASc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_PLD_Slot2-41_1_8063_diatracer.366004.366004.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nIGFLGLGLM[147]GSGIVc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_PLD_Slot2-41_1_8063_diatracer.366542.366542.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nSEPSPSC[160]SPSMSTc[61], unknown mods may exist in spectrum 20240927_SW-KF_S2_PLD_Slot2-41_1_8063_diatracer.366768.366768.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nYSFPVEM[147]MIC[160]LPNGTVMAc[61], unknown mods may exist in spectrum 20240927_SW-KF_S2_PLD_Slot2-41_1_8063_diatracer.367203.367203.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: n[43]MMNFAFEC[160]LEc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_PLD_Slot2-41_1_8063_diatracer.367358.367358.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nTTSNTPGGAEASGNHPDSLASDc[61], unknown mods may exist in spectrum 20240927_SW-KF_S2_PLD_Slot2-41_1_8063_diatracer.367459.367459.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nLGEEEEGASSTVC[160]c[61], unknown mods may exist in spectrum 20240927_SW-KF_S2_PLD_Slot2-41_1_8063_diatracer.371279.371279.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nSFEEWTQYQPc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_PLD_Slot2-41_1_8063_diatracer.372557.372557.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nLPTGEDAPQEHGLc[61], unknown mods may exist in spectrum 20240927_SW-KF_S2_PLD_Slot2-41_1_8063_diatracer.372611.372611.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nFLYDYEPNMSSc[61], unknown mods may exist in spectrum 20240927_SW-KF_S2_PLD_Slot2-41_1_8063_diatracer.374026.374026.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nSVLIVSIPSTNDRc[61], unknown mods may exist in spectrum 20240927_SW-KF_S2_PLD_Slot2-41_1_8063_diatracer.374972.374972.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nNTLFTRILNGQVc[61], unknown mods may exist in spectrum 20240927_SW-KF_S2_PLD_Slot2-41_1_8063_diatracer.375788.375788.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nESPVLETPPPSPQc[61], unknown mods may exist in spectrum 20240927_SW-KF_S2_PLD_Slot2-41_1_8063_diatracer.375840.375840.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nETVFPYLEDIPc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_PLD_Slot2-41_1_8063_diatracer.378266.378266.2 [INFO:] Please specify modification and rerun PTMProphet ... ​ [INFO:] written 23000/44936 spectrum_queries [ERROR:] Cannot initialize for sequence: nLPTGEDAPQEHGLc[61], unknown mods may exist in spectrum 20240927_SW-KF_S2_PLD_Slot2-41_1_8063_diatracer.379524.379524.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nEEAMAGGESVADAEc[61], unknown mods may exist in spectrum 20240927_SW-KF_S2_PLD_Slot2-41_1_8063_diatracer.379588.379588.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nPGM[147]DSPYDFSYSc[61], unknown mods may exist in spectrum 20240927_SW-KF_S2_PLD_Slot2-41_1_8063_diatracer.380053.380053.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nLYEPC[160]YC[160]SSLGc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_PLD_Slot2-41_1_8063_diatracer.380214.380214.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nTSSSEAHIPDQETTSLTSGTc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_PLD_Slot2-41_1_8063_diatracer.384281.384281.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nETRGSTSLNGMRc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_PLD_Slot2-41_1_8063_diatracer.384846.384846.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nIEAM[147]LEC[160]QQFLQLQFYc[61], unknown mods may exist in spectrum 20240927_SW-KF_S2_PLD_Slot2-41_1_8063_diatracer.385135.385135.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nFVSC[160]PPDPHKGIEFGVYC[160]c[61], unknown mods may exist in spectrum 20240927_SW-KF_S2_PLD_Slot2-41_1_8063_diatracer.387204.387204.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nTAGAMMQFTAPIPc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_PLD_Slot2-41_1_8063_diatracer.390959.390959.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nSLLM[147]AGAVASSTFLc[61], unknown mods may exist in spectrum 20240927_SW-KF_S2_PLD_Slot2-41_1_8063_diatracer.391826.391826.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nVSFPTPTLAPSPFc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_PLD_Slot2-41_1_8063_diatracer.392088.392088.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nKQGAGAPTAPc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_PLD_Slot2-41_1_8063_diatracer.393101.393101.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nESVQGAAQDc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_PLD_Slot2-41_1_8063_diatracer.393248.393248.2 [INFO:] Please specify modification and rerun PTMProphet ... ​ [INFO:] written 24000/44936 spectrum_queries [ERROR:] Cannot initialize for sequence: nSLLM[147]AGAVASSTFLc[61], unknown mods may exist in spectrum 20240927_SW-KF_S2_PLD_Slot2-41_1_8063_diatracer.397031.397031.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nLGLQLAAVAAc[61], unknown mods may exist in spectrum 20240927_SW-KF_S2_PLD_Slot2-41_1_8063_diatracer.398973.398973.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nVTSATPM[147]SC[160]VEAVc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_PLD_Slot2-41_1_8063_diatracer.399798.399798.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nGGAAASAAGAAPAc[61], unknown mods may exist in spectrum 20240927_SW-KF_S2_PLD_Slot2-41_1_8063_diatracer.400989.400989.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nGAGPGGGC[160]ERc[61], unknown mods may exist in spectrum 20240927_SW-KF_S2_PLD_Slot2-41_1_8063_diatracer.404923.404923.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nSGVSGGHERc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_PLD_Slot2-41_1_8063_diatracer.405884.405884.2 [INFO:] Please specify modification and rerun PTMProphet ... ​ [INFO:] written 25000/44936 spectrum_queries [ERROR:] Cannot initialize for sequence: nVSFPTPTLAPSPFc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_PLD_Slot2-41_1_8063_diatracer.406742.406742.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nQLYLTQHc[61], unknown mods may exist in spectrum 20240927_SW-KF_S2_PLD_Slot2-41_1_8063_diatracer.407347.407347.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nEVTAGPQEGc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_PLD_Slot2-41_1_8063_diatracer.407753.407753.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nIVSASLIMSc[61], unknown mods may exist in spectrum 20240927_SW-KF_S2_PLD_Slot2-41_1_8063_diatracer.409328.409328.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nFALFSAGAVLLGTPAc[61], unknown mods may exist in spectrum 20240927_SW-KF_S2_PLD_Slot2-41_1_8063_diatracer.409647.409647.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nIVSASLIMSc[61], unknown mods may exist in spectrum 20240927_SW-KF_S2_PLD_Slot2-41_1_8063_diatracer.410192.410192.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nQQGRNSGVSc[61], unknown mods may exist in spectrum 20240927_SW-KF_S2_PLD_Slot2-41_1_8063_diatracer.410401.410401.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nQQGRNSGVSc[61], unknown mods may exist in spectrum 20240927_SW-KF_S2_PLD_Slot2-41_1_8063_diatracer.410402.410402.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nNVWGFLGIc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_PLD_Slot2-41_1_8063_diatracer.410675.410675.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nVSFPTPTLAPSPFc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_PLD_Slot2-41_1_8063_diatracer.411195.411195.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nNFIPGISFYTSFFSSFc[61], unknown mods may exist in spectrum 20240927_SW-KF_S2_PLD_Slot2-41_1_8063_diatracer.423238.423238.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nYLAPSNQSVEQEAMQLc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_PLD_Slot2-41_1_8063_diatracer.424969.424969.2 [INFO:] Please specify modification and rerun PTMProphet ... ​ [INFO:] written 27000/44936 spectrum_queries [ERROR:] Cannot initialize for sequence: nLHHYTWWMQHc[61], unknown mods may exist in spectrum 20240927_SW-KF_S2_PLD_Slot2-41_1_8063_diatracer.448339.448339.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nEVLNSITGLVEKTc[61], unknown mods may exist in spectrum 20240927_SW-KF_S2_PLD_Slot2-41_1_8063_diatracer.449993.449993.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nM[147]LDLAC[160]DLQQDSc[61], unknown mods may exist in spectrum 20240927_SW-KF_S2_PLD_Slot2-41_1_8063_diatracer.450416.450416.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nPRHSLDSGSDKLSc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_PLD_Slot2-41_1_8063_diatracer.450798.450798.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nVSLC[160]HPVWSAMAc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_PLD_Slot2-41_1_8063_diatracer.453779.453779.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nLYDEIFISSEPNc[61], unknown mods may exist in spectrum 20240927_SW-KF_S2_PLD_Slot2-41_1_8063_diatracer.458078.458078.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nPQETEDPDHC[160]LGc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_PLD_Slot2-41_1_8063_diatracer.458486.458486.2 [INFO:] Please specify modification and rerun PTMProphet ... ​ [INFO:] written 28000/44936 spectrum_queries [ERROR:] Cannot initialize for sequence: nPQETEDPDHC[160]LGc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_PLD_Slot2-41_1_8063_diatracer.461028.461028.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nVQLAGC[160]SEVAGGVGNc[61], unknown mods may exist in spectrum 20240927_SW-KF_S2_PLD_Slot2-41_1_8063_diatracer.462994.462994.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nLEMEEPDSVSGTSc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_PLD_Slot2-41_1_8063_diatracer.464437.464437.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nVSLC[160]HPVWSAMAc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_PLD_Slot2-41_1_8063_diatracer.465213.465213.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nSGD[158]IWLDAYLHQc[61], unknown mods may exist in spectrum 20240927_SW-KF_S2_PLD_Slot2-41_1_8063_diatracer.469150.469150.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nSGD[158]IWLDAYLHQc[61], unknown mods may exist in spectrum 20240927_SW-KF_S2_PLD_Slot2-41_1_8063_diatracer.471214.471214.3 [INFO:] Please specify modification and rerun PTMProphet ... ​ [INFO:] written 29000/44936 spectrum_queries [ERROR:] Cannot initialize for sequence: nNLTGVPDDYYPRc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_PLD_Slot2-41_1_8063_diatracer.475114.475114.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nGALQAVDQLc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_PLD_Slot2-41_1_8063_diatracer.475296.475296.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nLHRALHWc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_PLD_Slot2-41_1_8063_diatracer.476663.476663.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nAQPTTADPTPc[61], unknown mods may exist in spectrum 20240927_SW-KF_S2_PLD_Slot2-41_1_8063_diatracer.477126.477126.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nATEENGMGQVSGTKc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_PLD_Slot2-41_1_8063_diatracer.478253.478253.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nINEGLEHLAKAEKc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_PLD_Slot2-41_1_8063_diatracer.479854.479854.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nNERLHHDc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_PLD_Slot2-41_1_8063_diatracer.481449.481449.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nPGSEADFSSSc[61], unknown mods may exist in spectrum 20240927_SW-KF_S2_PLD_Slot2-41_1_8063_diatracer.482902.482902.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nLHRALHWc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_PLD_Slot2-41_1_8063_diatracer.483885.483885.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nPAPPAQSLNPFLAPc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_PLD_Slot2-41_1_8063_diatracer.484518.484518.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nELEDIQQHPLAMc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_PLD_Slot2-41_1_8063_diatracer.485557.485557.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nTC[160]NLDMQDNAAANc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_PLD_Slot2-41_1_8063_diatracer.485848.485848.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nEAVVHGLNEc[61], unknown mods may exist in spectrum 20240927_SW-KF_S2_PLD_Slot2-41_1_8063_diatracer.486790.486790.2 [INFO:] Please specify modification and rerun PTMProphet ... ​ [INFO:] written 30000/44936 spectrum_queries [ERROR:] Cannot initialize for sequence: nGPSASAALSPPc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_PLD_Slot2-41_1_8063_diatracer.490498.490498.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nLTNSHAMGSFSGVAGGTVGGNc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_PLD_Slot2-41_1_8063_diatracer.490713.490713.4 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nPEDC[160]PALSVAHGGALLPSSM[147]VQSc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_PLD_Slot2-41_1_8063_diatracer.494680.494680.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nDNYC[160]IISSSEESELDNc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_PLD_Slot2-41_1_8063_diatracer.498633.498633.2 [INFO:] Please specify modification and rerun PTMProphet ... ​ [INFO:] written 31000/44936 spectrum_queries [ERROR:] Cannot initialize for sequence: nQAEAFAVSC[160]NAEAEELGEc[61], unknown mods may exist in spectrum 20240927_SW-KF_S2_PLD_Slot2-41_1_8063_diatracer.511343.511343.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nAPEQFEYFDQWDGDAAc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_PLD_Slot2-41_1_8063_diatracer.512285.512285.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nNTSNLIWYSVTSSc[61], unknown mods may exist in spectrum 20240927_SW-KF_S2_PLD_Slot2-41_1_8063_diatracer.516858.516858.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nANGQIVPSYVHPHc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_PLD_Slot2-41_1_8063_diatracer.517786.517786.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nNSAASSSSLIGATSLPc[61], unknown mods may exist in spectrum 20240927_SW-KF_S2_PLD_Slot2-41_1_8063_diatracer.517851.517851.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nVAPGEYNDFSEPLc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_PLD_Slot2-41_1_8063_diatracer.518473.518473.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nLNSFGMSLYIPEQc[61], unknown mods may exist in spectrum 20240927_SW-KF_S2_PLD_Slot2-41_1_8063_diatracer.524050.524050.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nM[147]TLSGMSGLQSGSDSc[61], unknown mods may exist in spectrum 20240927_SW-KF_S2_PLD_Slot2-41_1_8063_diatracer.524840.524840.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nC[160]ADELM[147]PPPYQNc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_PLD_Slot2-41_1_8063_diatracer.525248.525248.2 [INFO:] Please specify modification and rerun PTMProphet ... ​ [INFO:] written 32000/44936 spectrum_queries [ERROR:] Cannot initialize for sequence: nLQDQLDHRGDHPLTPGSHYAc[61], unknown mods may exist in spectrum 20240927_SW-KF_S2_PLD_Slot2-41_1_8063_diatracer.527933.527933.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nDLDPQDPHDLTGNc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_PLD_Slot2-41_1_8063_diatracer.528996.528996.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nDRTGRGPGLSGGPPEc[61], unknown mods may exist in spectrum 20240927_SW-KF_S2_PLD_Slot2-41_1_8063_diatracer.532270.532270.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nAVSTDPPHHDHHDEFC[160]LM[147]Pc[61], unknown mods may exist in spectrum 20240927_SW-KF_S2_PLD_Slot2-41_1_8063_diatracer.534466.534466.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nYTTVTPELPTEFSc[61], unknown mods may exist in spectrum 20240927_SW-KF_S2_PLD_Slot2-41_1_8063_diatracer.537020.537020.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nAIRQILSAM[147]NDRPc[61], unknown mods may exist in spectrum 20240927_SW-KF_S2_PLD_Slot2-41_1_8063_diatracer.540108.540108.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nM[147]YEVPELAAIQDGc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_PLD_Slot2-41_1_8063_diatracer.542753.542753.2 [INFO:] Please specify modification and rerun PTMProphet ... ​ [INFO:] written 33000/44936 spectrum_queries [ERROR:] Cannot initialize for sequence: nNPPGEEAQGC[160]SPSVc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_PLD_Slot2-41_1_8063_diatracer.543441.543441.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nGVITSHSHVEELIGGLLNWDGc[61], unknown mods may exist in spectrum 20240927_SW-KF_S2_PLD_Slot2-41_1_8063_diatracer.543511.543511.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: n[43]SNNGADLTFc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_PLD_Slot2-41_1_8063_diatracer.548598.548598.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nEVVQLASEAAc[61], unknown mods may exist in spectrum 20240927_SW-KF_S2_PLD_Slot2-41_1_8063_diatracer.549617.549617.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nHGSC[160]VETSLc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_PLD_Slot2-41_1_8063_diatracer.551098.551098.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nEVVQLASEAAc[61], unknown mods may exist in spectrum 20240927_SW-KF_S2_PLD_Slot2-41_1_8063_diatracer.552001.552001.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nGLSPLDAPELDGLDQVGQISc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_PLD_Slot2-41_1_8063_diatracer.552950.552950.4 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nGPAVWSGPGAAGGGLGGRc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_PLD_Slot2-41_1_8063_diatracer.553576.553576.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nIAVDTFTLPGc[61], unknown mods may exist in spectrum 20240927_SW-KF_S2_PLD_Slot2-41_1_8063_diatracer.553600.553600.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nEYTDVATGIc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_PLD_Slot2-41_1_8063_diatracer.556520.556520.2 [INFO:] Please specify modification and rerun PTMProphet ... ​ [INFO:] written 34000/44936 spectrum_queries [ERROR:] Cannot initialize for sequence: nEVVQLASEAAc[61], unknown mods may exist in spectrum 20240927_SW-KF_S2_PLD_Slot2-41_1_8063_diatracer.559147.559147.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nTIGC[160]VFNHQMFLGc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_PLD_Slot2-41_1_8063_diatracer.559438.559438.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nDDASMDRDDNQGEPc[61], unknown mods may exist in spectrum 20240927_SW-KF_S2_PLD_Slot2-41_1_8063_diatracer.560503.560503.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nLHQDAPDLAc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_PLD_Slot2-41_1_8063_diatracer.561629.561629.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nAEPQSLDGVDc[61], unknown mods may exist in spectrum 20240927_SW-KF_S2_PLD_Slot2-41_1_8063_diatracer.561678.561678.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nQC[160]ALC[160]LTYGDDSANc[61], unknown mods may exist in spectrum 20240927_SW-KF_S2_PLD_Slot2-41_1_8063_diatracer.561974.561974.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nKGEAQGSAASAAVAGTAAAc[61], unknown mods may exist in spectrum 20240927_SW-KF_S2_PLD_Slot2-41_1_8063_diatracer.562082.562082.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nGKTDTYFSTSIPSEc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_PLD_Slot2-41_1_8063_diatracer.565480.565480.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nLDGAIRMQPc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_PLD_Slot2-41_1_8063_diatracer.565554.565554.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: n[43]MQSGLAGGGPPAGC[160]ASAc[61], unknown mods may exist in spectrum 20240927_SW-KF_S2_PLD_Slot2-41_1_8063_diatracer.567112.567112.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nTEKMTSTTAEGAGEQc[61], unknown mods may exist in spectrum 20240927_SW-KF_S2_PLD_Slot2-41_1_8063_diatracer.567243.567243.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nASVITQVFHc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_PLD_Slot2-41_1_8063_diatracer.569216.569216.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nPEGGGGGQAAAAAc[61], unknown mods may exist in spectrum 20240927_SW-KF_S2_PLD_Slot2-41_1_8063_diatracer.569685.569685.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nEVVQLASEAAc[61], unknown mods may exist in spectrum 20240927_SW-KF_S2_PLD_Slot2-41_1_8063_diatracer.569874.569874.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nLHQDAPDLAc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_PLD_Slot2-41_1_8063_diatracer.569970.569970.2 [INFO:] Please specify modification and rerun PTMProphet ... ​ [INFO:] written 35000/44936 spectrum_queries [ERROR:] Cannot initialize for sequence: nQEMAGPPPSVc[61], unknown mods may exist in spectrum 20240927_SW-KF_S2_PLD_Slot2-41_1_8063_diatracer.571990.571990.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nPNSSVAAKGM[147]QDTEEQM[147]Kc[61], unknown mods may exist in spectrum 20240927_SW-KF_S2_PLD_Slot2-41_1_8063_diatracer.577842.577842.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nDEM[147]EKQEEASAAEPVEASc[61], unknown mods may exist in spectrum 20240927_SW-KF_S2_PLD_Slot2-41_1_8063_diatracer.578351.578351.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nC[160]PNEGDPSPSTC[160]SAPSSSLc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_PLD_Slot2-41_1_8063_diatracer.581295.581295.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nPPPAPSLM[147]DESWFVTPPAc[61], unknown mods may exist in spectrum 20240927_SW-KF_S2_PLD_Slot2-41_1_8063_diatracer.582326.582326.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nEYQGFFPVLMDPTHC[160]Pc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_PLD_Slot2-41_1_8063_diatracer.582806.582806.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nPAVSDLDEEFSTGGGGSDTLc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_PLD_Slot2-41_1_8063_diatracer.584789.584789.2 [INFO:] Please specify modification and rerun PTMProphet ... ​ [INFO:] written 36000/44936 spectrum_queries [ERROR:] Cannot initialize for sequence: nQM[147]LEPDLDVDMGEc[61], unknown mods may exist in spectrum 20240927_SW-KF_S2_PLD_Slot2-41_1_8063_diatracer.597156.597156.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nMFHWQATIM[147]GPISNYMLDNc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_PLD_Slot2-41_1_8063_diatracer.598169.598169.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nFPTYPVPHYSFFc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_PLD_Slot2-41_1_8063_diatracer.598347.598347.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nSGNNSVGAIQC[160]PDSQFEC[160]PDFSTC[160]C[160]VMc[61], unknown mods may exist in spectrum 20240927_SW-KF_S2_PLD_Slot2-41_1_8063_diatracer.601471.601471.4 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nLIADASVPGSDYINAc[61], unknown mods may exist in spectrum 20240927_SW-KF_S2_PLD_Slot2-41_1_8063_diatracer.604057.604057.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nQEDSGGSSSNSSSSSEc[61], unknown mods may exist in spectrum 20240927_SW-KF_S2_PLD_Slot2-41_1_8063_diatracer.606135.606135.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nHSVGGGGAAAPAGQPGGGPc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_PLD_Slot2-41_1_8063_diatracer.607891.607891.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nPSQLEPGPTDTQPSPc[61], unknown mods may exist in spectrum 20240927_SW-KF_S2_PLD_Slot2-41_1_8063_diatracer.610732.610732.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nMIELTEQTTNSNSc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_PLD_Slot2-41_1_8063_diatracer.611086.611086.2 [INFO:] Please specify modification and rerun PTMProphet ... ​ [INFO:] written 37000/44936 spectrum_queries [ERROR:] Cannot initialize for sequence: nAWTWPDALNIENSDSESWTSc[61], unknown mods may exist in spectrum 20240927_SW-KF_S2_PLD_Slot2-41_1_8063_diatracer.612856.612856.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nC[160]VSTM[147]FSFTGMWc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_PLD_Slot2-41_1_8063_diatracer.613854.613854.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nC[160]KEEVVSTLDAVQc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_PLD_Slot2-41_1_8063_diatracer.616755.616755.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nEQAQLSDANEVM[147]Dc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_PLD_Slot2-41_1_8063_diatracer.619340.619340.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nLEENLQETHSAVLc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_PLD_Slot2-41_1_8063_diatracer.619814.619814.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nVYGTGNGPYC[160]AVMAc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_PLD_Slot2-41_1_8063_diatracer.621845.621845.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nDQPC[160]AAGAPPPEANGAc[61], unknown mods may exist in spectrum 20240927_SW-KF_S2_PLD_Slot2-41_1_8063_diatracer.622263.622263.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nTGQPSAPGDTSVNGPVc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_PLD_Slot2-41_1_8063_diatracer.622543.622543.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nAM[147]SSKGPSASAALSPPc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_PLD_Slot2-41_1_8063_diatracer.625126.625126.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: n[43]MTYVQVLSPSPAMAc[61], unknown mods may exist in spectrum 20240927_SW-KF_S2_PLD_Slot2-41_1_8063_diatracer.625483.625483.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nEYTAEIM[147]FESFNc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_PLD_Slot2-41_1_8063_diatracer.627079.627079.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nLGELQKIFAc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_PLD_Slot2-41_1_8063_diatracer.628943.628943.2 [INFO:] Please specify modification and rerun PTMProphet ... ​ [INFO:] written 38000/44936 spectrum_queries [ERROR:] Cannot initialize for sequence: nAVNSATGVPTVc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_PLD_Slot2-41_1_8063_diatracer.630137.630137.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nLGELQKIFAc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_PLD_Slot2-41_1_8063_diatracer.630240.630240.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nYLEPNIAGVM[147]C[160]ADGAc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_PLD_Slot2-41_1_8063_diatracer.630479.630479.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nTLGAGSESTDSc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_PLD_Slot2-41_1_8063_diatracer.632951.632951.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nGADGQVGSGEDAc[61], unknown mods may exist in spectrum 20240927_SW-KF_S2_PLD_Slot2-41_1_8063_diatracer.633998.633998.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nGYGTM[147]QVASGQTEVTSc[61], unknown mods may exist in spectrum 20240927_SW-KF_S2_PLD_Slot2-41_1_8063_diatracer.634370.634370.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nFVLPVGATINc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_PLD_Slot2-41_1_8063_diatracer.635792.635792.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nTKFTGTASSIc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_PLD_Slot2-41_1_8063_diatracer.636471.636471.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nTEEYIPYEc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_PLD_Slot2-41_1_8063_diatracer.642585.642585.2 [INFO:] Please specify modification and rerun PTMProphet ... ​ [INFO:] written 39000/44936 spectrum_queries [ERROR:] Cannot initialize for sequence: nGVPLSVNPVC[160]c[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_PLD_Slot2-41_1_8063_diatracer.645095.645095.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nM[147]TGSAADYNLc[61], unknown mods may exist in spectrum 20240927_SW-KF_S2_PLD_Slot2-41_1_8063_diatracer.648219.648219.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nAM[147]LLTSYLPc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_PLD_Slot2-41_1_8063_diatracer.648574.648574.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nQFGVNSGAGLEQLAVNc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_PLD_Slot2-41_1_8063_diatracer.648948.648948.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nILQDIQEGEc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_PLD_Slot2-41_1_8063_diatracer.649050.649050.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nQQPWQETSLAQDQc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_PLD_Slot2-41_1_8063_diatracer.649462.649462.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nILQDIQEGEc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_PLD_Slot2-41_1_8063_diatracer.651648.651648.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nTPLYSHSPLc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_PLD_Slot2-41_1_8063_diatracer.652163.652163.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nPEM[147]GEEAAAAAc[61], unknown mods may exist in spectrum 20240927_SW-KF_S2_PLD_Slot2-41_1_8063_diatracer.656055.656055.2 [INFO:] Please specify modification and rerun PTMProphet ... ​ [INFO:] written 40000/44936 spectrum_queries [ERROR:] Cannot initialize for sequence: nDAGPGRSPANSAc[61], unknown mods may exist in spectrum 20240927_SW-KF_S2_PLD_Slot2-41_1_8063_diatracer.657050.657050.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nMDDAVETTATc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_PLD_Slot2-41_1_8063_diatracer.657116.657116.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nAAVYVGSFSWESM[147]MWWSc[61], unknown mods may exist in spectrum 20240927_SW-KF_S2_PLD_Slot2-41_1_8063_diatracer.671300.671300.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nFDIQQGGAVLAM[147]WPVGGSGDc[61], unknown mods may exist in spectrum 20240927_SW-KF_S2_PLD_Slot2-41_1_8063_diatracer.676650.676650.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nSPYHC[160]SFPM[147]QGDAc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_PLD_Slot2-41_1_8063_diatracer.677134.677134.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nSPYHC[160]SFPM[147]QGDAc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_PLD_Slot2-41_1_8063_diatracer.677135.677135.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nSPYHC[160]SFPM[147]QGDAc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_PLD_Slot2-41_1_8063_diatracer.678438.678438.2 [INFO:] Please specify modification and rerun PTMProphet ... ​ [INFO:] written 41000/44936 spectrum_queries [ERROR:] Cannot initialize for sequence: nSPYHC[160]SFPM[147]QGDAc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_PLD_Slot2-41_1_8063_diatracer.681048.681048.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nSPYHC[160]SFPM[147]QGDAc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_PLD_Slot2-41_1_8063_diatracer.682350.682350.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nSPYHC[160]SFPM[147]QGDAc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_PLD_Slot2-41_1_8063_diatracer.682353.682353.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nM[147]TSPVYGTDMMVGIc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_PLD_Slot2-41_1_8063_diatracer.685281.685281.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nSPYHC[160]SFPM[147]QGDAc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_PLD_Slot2-41_1_8063_diatracer.687566.687566.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nSPYHC[160]SFPM[147]QGDAc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_PLD_Slot2-41_1_8063_diatracer.687568.687568.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nM[147]LIPFSNPRVLPGPc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_PLD_Slot2-41_1_8063_diatracer.695335.695335.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nSPYHC[160]SFPM[147]QGDAc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_PLD_Slot2-41_1_8063_diatracer.695383.695383.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nPSTLQAASTPQAEEDWTC[160]TILc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_PLD_Slot2-41_1_8063_diatracer.697016.697016.3 [INFO:] Please specify modification and rerun PTMProphet ... ​ [INFO:] written 42000/44936 spectrum_queries [ERROR:] Cannot initialize for sequence: nGC[160]GVGAEGSSTSVEDLc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_PLD_Slot2-41_1_8063_diatracer.698414.698414.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nEFSADQM[147]SENTDQc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_PLD_Slot2-41_1_8063_diatracer.699501.699501.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nSPYHC[160]SFPM[147]QGDAc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_PLD_Slot2-41_1_8063_diatracer.700594.700594.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nM[147]LIPFSNPRVLPGPc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_PLD_Slot2-41_1_8063_diatracer.701846.701846.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nSPYHC[160]SFPM[147]QGDAc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_PLD_Slot2-41_1_8063_diatracer.701892.701892.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nIC[160]MIC[160]SVPGM[147]M[147]SFc[61], unknown mods may exist in spectrum 20240927_SW-KF_S2_PLD_Slot2-41_1_8063_diatracer.703437.703437.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nSFLVQAMTEHDQSVc[61], unknown mods may exist in spectrum 20240927_SW-KF_S2_PLD_Slot2-41_1_8063_diatracer.704295.704295.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nWPWVHIYEM[147]PGAGRGSAQGC[160]Tc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_PLD_Slot2-41_1_8063_diatracer.705766.705766.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nGM[147]GLGFTSSMRGMDAVc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_PLD_Slot2-41_1_8063_diatracer.708554.708554.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nEISSAAAHSQPFAWKc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_PLD_Slot2-41_1_8063_diatracer.708649.708649.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nPIGPDDAIDALSSDFTc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_PLD_Slot2-41_1_8063_diatracer.708694.708694.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nDLNVLTPTGFc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_PLD_Slot2-41_1_8063_diatracer.710504.710504.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nLC[160]HITSGEALc[61], unknown mods may exist in spectrum 20240927_SW-KF_S2_PLD_Slot2-41_1_8063_diatracer.711541.711541.2 [INFO:] Please specify modification and rerun PTMProphet ... ​ [INFO:] written 43000/44936 spectrum_queries [ERROR:] Cannot initialize for sequence: nLGNWSAM[147]PSC[160]c[61], unknown mods may exist in spectrum 20240927_SW-KF_S2_PLD_Slot2-41_1_8063_diatracer.713862.713862.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nYLTFGIPPPVc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_PLD_Slot2-41_1_8063_diatracer.715657.715657.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nYLTFGIPPPVc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_PLD_Slot2-41_1_8063_diatracer.717089.717089.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nYLTFGIPPPVc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_PLD_Slot2-41_1_8063_diatracer.718511.718511.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nSALASGHSIEEc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_PLD_Slot2-41_1_8063_diatracer.720987.720987.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: n[43]NSSPAGTPSPQc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_PLD_Slot2-41_1_8063_diatracer.723433.723433.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nDEEEDMSLDc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_PLD_Slot2-41_1_8063_diatracer.724838.724838.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nENLELNGSILSGQPSSc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_PLD_Slot2-41_1_8063_diatracer.725879.725879.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nSLNTHDVAAPLSPHSQc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_PLD_Slot2-41_1_8063_diatracer.726573.726573.3 [INFO:] Please specify modification and rerun PTMProphet ... ​ [INFO:] written 44000/44936 spectrum_queries [ERROR:] Cannot initialize for sequence: nVELAEALSVHc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_PLD_Slot2-41_1_8063_diatracer.727432.727432.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nIIQAGFHNMVc[61], unknown mods may exist in spectrum 20240927_SW-KF_S2_PLD_Slot2-41_1_8063_diatracer.729162.729162.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nASIDAAAAAAATSEPPQHc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_PLD_Slot2-41_1_8063_diatracer.729364.729364.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nTGSGGAGATAAADAc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_PLD_Slot2-41_1_8063_diatracer.730331.730331.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nIIQAGFHNMVc[61], unknown mods may exist in spectrum 20240927_SW-KF_S2_PLD_Slot2-41_1_8063_diatracer.733447.733447.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nTLSAPPSQPPSc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_PLD_Slot2-41_1_8063_diatracer.733576.733576.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nEVMLENYINc[61], unknown mods may exist in spectrum 20240927_SW-KF_S2_PLD_Slot2-41_1_8063_diatracer.734955.734955.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nIIQAGFHNMVc[61], unknown mods may exist in spectrum 20240927_SW-KF_S2_PLD_Slot2-41_1_8063_diatracer.735076.735076.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nYVFRDVVQITC[160]LDGc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_PLD_Slot2-41_1_8063_diatracer.735372.735372.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nM[147]GPPPGHNAAMALSQYc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_PLD_Slot2-41_1_8063_diatracer.737466.737466.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nPPSTDARAHVHHGERc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_PLD_Slot2-41_1_8063_diatracer.737783.737783.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nDDDILLNLVGC[160]ENSVTEGQEc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_PLD_Slot2-41_1_8063_diatracer.738890.738890.4 [INFO:] Please specify modification and rerun PTMProphet ... [INFO:] done ... [INFO:] Writing file interact-20240927_SW-KF_S2_PLD_Slot2-41_1_8063_diatracer.mod.pep.xml ... [INFO:] done ... Process 'PTMProphet' finished, exit code: 0 [INFO:] Using statically set 15 PPM tolerance ... [INFO:] Writing file interact-20240927_SW-KF_S1_PLD_Slot2-38_1_8058_diatracer.pep.xml.tmp.a00776 ... [INFO:] Creating 1 threads [INFO:] Wait for threads to finish ... [INFO:] Reading file interact-20240927_SW-KF_S1_PLD_Slot2-38_1_8058_diatracer.pep.xml ... [ERROR:] Cannot initialize for sequence: nGESPVKSDRNGSSVANEAEQc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_PLD_Slot2-38_1_8058_diatracer.02464.02464.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nLLALTPLLLLLLLLPWLLc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_PLD_Slot2-38_1_8058_diatracer.03918.03918.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nLGDTPSPPYPATPAGDIM[147]ELc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_PLD_Slot2-38_1_8058_diatracer.11363.11363.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nAIASATEVSLAATATHTATTQGc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_PLD_Slot2-38_1_8058_diatracer.13706.13706.2 [INFO:] Please specify modification and rerun PTMProphet ... ​ [INFO:] processed 1000/82198 spectrum_queries [ERROR:] Cannot initialize for sequence: nVYEKHSAQc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_PLD_Slot2-38_1_8058_diatracer.15259.15259.1 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nLLALTPLLLLLLLLPWLLc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_PLD_Slot2-38_1_8058_diatracer.17872.17872.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nPFSPSAYSLPASLNSSIVM[147]QHGTSLDSTDTYc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_PLD_Slot2-38_1_8058_diatracer.27419.27419.4 [INFO:] Please specify modification and rerun PTMProphet ... ​ [INFO:] processed 2000/82198 spectrum_queries [ERROR:] Cannot initialize for sequence: nAEALLAMAEAEKGSNDc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_PLD_Slot2-38_1_8058_diatracer.31328.31328.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nAVMIGAC[160]FLIDFM[147]Fc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_PLD_Slot2-38_1_8058_diatracer.32362.32362.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nELAGNTSSPPLSPGRPc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_PLD_Slot2-38_1_8058_diatracer.35666.35666.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nALGATFC[160]FFAVEAVVc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_PLD_Slot2-38_1_8058_diatracer.36637.36637.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nGADLGWGETAQAQFPGc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_PLD_Slot2-38_1_8058_diatracer.43085.43085.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nTGKVRAVIGSTYM[147]LTQDEVLWc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_PLD_Slot2-38_1_8058_diatracer.43239.43239.3 [INFO:] Please specify modification and rerun PTMProphet ... ​ [INFO:] processed 3000/82198 spectrum_queries [ERROR:] Cannot initialize for sequence: nLPSVGFSETGAPGPARM[147]EGAQAAAVc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_PLD_Slot2-38_1_8058_diatracer.49506.49506.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nAPTAALPQGVVM[147]AASPGSLHSPQQLc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_PLD_Slot2-38_1_8058_diatracer.51096.51096.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nTYIMM[147]VNATNQM[147]GSc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_PLD_Slot2-38_1_8058_diatracer.52628.52628.2 [INFO:] Please specify modification and rerun PTMProphet ... ​ [INFO:] processed 4000/82198 spectrum_queries [ERROR:] Cannot initialize for sequence: nPC[160]HKQGALPLGM[147]FSc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_PLD_Slot2-38_1_8058_diatracer.64045.64045.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nGLAVGTGESNENLSGSSDHQAGVC[160]GGc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_PLD_Slot2-38_1_8058_diatracer.65103.65103.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nVVQC[160]SDLGIDSC[160]QQc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_PLD_Slot2-38_1_8058_diatracer.66409.66409.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nM[147]SLTLNQVIQDAQKc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_PLD_Slot2-38_1_8058_diatracer.70125.70125.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nILEVSNC[160]LIVDPDSc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_PLD_Slot2-38_1_8058_diatracer.71094.71094.2 [INFO:] Please specify modification and rerun PTMProphet ... ​ [INFO:] processed 5000/82198 spectrum_queries [ERROR:] Cannot initialize for sequence: nEEVVIAGM[147]SGKLPESENc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_PLD_Slot2-38_1_8058_diatracer.73884.73884.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nSTIGVMVTASHNPEAQQc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_PLD_Slot2-38_1_8058_diatracer.74053.74053.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nSLPGSPDGNGSSSC[160]PTGSSGc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_PLD_Slot2-38_1_8058_diatracer.77981.77981.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nSGFGSGVTSFGC[160]c[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_PLD_Slot2-38_1_8058_diatracer.78766.78766.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nPAGPGTAGAALRDc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_PLD_Slot2-38_1_8058_diatracer.80313.80313.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nHMAQTANQDPASIMFNc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_PLD_Slot2-38_1_8058_diatracer.80350.80350.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nNM[147]DHVYPVSSHIAFSc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_PLD_Slot2-38_1_8058_diatracer.80953.80953.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nVDFSLAGALNAGc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_PLD_Slot2-38_1_8058_diatracer.81391.81391.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nGLLTTTFSAIPAc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_PLD_Slot2-38_1_8058_diatracer.82196.82196.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nNLLESIPTHSc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_PLD_Slot2-38_1_8058_diatracer.82617.82617.2 [INFO:] Please specify modification and rerun PTMProphet ... ​ [INFO:] processed 6000/82198 spectrum_queries [ERROR:] Cannot initialize for sequence: nVVAAPPLPGAARc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_PLD_Slot2-38_1_8058_diatracer.85017.85017.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nSQLQLYLTC[160]HGPTAAPEGTVPSc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_PLD_Slot2-38_1_8058_diatracer.86978.86978.4 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nKIGSTFLSGTEM[147]VPC[160]Ec[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_PLD_Slot2-38_1_8058_diatracer.87302.87302.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nELEQKNAMITVLENTc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_PLD_Slot2-38_1_8058_diatracer.87306.87306.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nGEAGVAAAC[160]GAEGGc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_PLD_Slot2-38_1_8058_diatracer.87558.87558.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: n[43]MAEQLLEM[147]Sc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_PLD_Slot2-38_1_8058_diatracer.88690.88690.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nGLLTTTFSAIPAc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_PLD_Slot2-38_1_8058_diatracer.90320.90320.2 [INFO:] Please specify modification and rerun PTMProphet ... ​ [INFO:] processed 7000/82198 spectrum_queries [ERROR:] Cannot initialize for sequence: nMQLDPC[160]EDTSLQPTSc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_PLD_Slot2-38_1_8058_diatracer.95013.95013.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nIIEM[147]AAAGHGDPc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_PLD_Slot2-38_1_8058_diatracer.98667.98667.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nLC[160]INIITSVHc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_PLD_Slot2-38_1_8058_diatracer.101469.101469.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nTESSSNNM[147]TAPLAPGPPGc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_PLD_Slot2-38_1_8058_diatracer.101819.101819.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nGAWKNSVEEWTTEDWTEDHc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_PLD_Slot2-38_1_8058_diatracer.105192.105192.4 [INFO:] Please specify modification and rerun PTMProphet ... ​ [INFO:] processed 8000/82198 spectrum_queries [ERROR:] Cannot initialize for sequence: nTTELGGAAPSPEc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_PLD_Slot2-38_1_8058_diatracer.105992.105992.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nETWGSVIASSPSAQASAHLLSSKAc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_PLD_Slot2-38_1_8058_diatracer.108548.108548.4 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nAISEELDHALNDM[147]TSIc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_PLD_Slot2-38_1_8058_diatracer.108835.108835.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nEGNVLMDTELc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_PLD_Slot2-38_1_8058_diatracer.109405.109405.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nEVVGYAGRGLEc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_PLD_Slot2-38_1_8058_diatracer.112639.112639.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nEPPVAAPSGTAALIPETAAc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_PLD_Slot2-38_1_8058_diatracer.113416.113416.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nPGSLFAALM[147]ATATSSLRc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_PLD_Slot2-38_1_8058_diatracer.115082.115082.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nPQDWLWAWGc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_PLD_Slot2-38_1_8058_diatracer.115395.115395.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nIDAAEGPSDIPDc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_PLD_Slot2-38_1_8058_diatracer.116997.116997.2 [INFO:] Please specify modification and rerun PTMProphet ... ​ [INFO:] processed 9000/82198 spectrum_queries [ERROR:] Cannot initialize for sequence: nPQPASPDM[147]RGPPPASGPQc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_PLD_Slot2-38_1_8058_diatracer.118285.118285.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nAEAQLGTLAAAVAc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_PLD_Slot2-38_1_8058_diatracer.118361.118361.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nYNNGSTELHSc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_PLD_Slot2-38_1_8058_diatracer.119132.119132.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nYNNGSTELHSc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_PLD_Slot2-38_1_8058_diatracer.119292.119292.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nEM[147]ELPM[147]VTVc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_PLD_Slot2-38_1_8058_diatracer.119371.119371.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nEM[147]ELPM[147]VTVc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_PLD_Slot2-38_1_8058_diatracer.119530.119530.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nSAFHSSSc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_PLD_Slot2-38_1_8058_diatracer.121630.121630.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nYNNGSTELHSc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_PLD_Slot2-38_1_8058_diatracer.122454.122454.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nVIQGDGVDINTLQEVC[160]VLYc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_PLD_Slot2-38_1_8058_diatracer.126794.126794.2 [INFO:] Please specify modification and rerun PTMProphet ... ​ [INFO:] processed 10000/82198 spectrum_queries [ERROR:] Cannot initialize for sequence: nVIQGDGVDINTLQEVC[160]VLYc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_PLD_Slot2-38_1_8058_diatracer.133585.133585.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nM[147]LIESASTNEVM[147]AQMEMISc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_PLD_Slot2-38_1_8058_diatracer.133764.133764.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nKDLC[160]AIWEASSSSHAAHAAVc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_PLD_Slot2-38_1_8058_diatracer.138231.138231.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nQSFHM[147]AM[147]GNPSEFFVDVMc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_PLD_Slot2-38_1_8058_diatracer.142206.142206.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nRELQQVTAGEAASIHc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_PLD_Slot2-38_1_8058_diatracer.144234.144234.2 [INFO:] Please specify modification and rerun PTMProphet ... ​ [INFO:] processed 11000/82198 spectrum_queries [ERROR:] Cannot initialize for sequence: nANKVNWQSYLQGQMISAEDLC[160]c[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_PLD_Slot2-38_1_8058_diatracer.150023.150023.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nGLGTDEDSLIE[172]IIC[160]Sc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_PLD_Slot2-38_1_8058_diatracer.152534.152534.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nEEGGMKGSPSSAKEEFc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_PLD_Slot2-38_1_8058_diatracer.154576.154576.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nGFSGEGIMELVHYKEc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_PLD_Slot2-38_1_8058_diatracer.159534.159534.2 [INFO:] Please specify modification and rerun PTMProphet ... ​ [INFO:] processed 12000/82198 spectrum_queries [ERROR:] Cannot initialize for sequence: nEAAQC[160]TEFAQEM[147]DEc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_PLD_Slot2-38_1_8058_diatracer.166383.166383.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nFTVSGQFSPC[160]INAHGARMGGFERc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_PLD_Slot2-38_1_8058_diatracer.172010.172010.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nRPEFC[160]NTGPAAYPRc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_PLD_Slot2-38_1_8058_diatracer.172172.172172.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nEAWSLGGGGGLATDSSSPc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_PLD_Slot2-38_1_8058_diatracer.172806.172806.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nSYFDEAAC[160]NLREWc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_PLD_Slot2-38_1_8058_diatracer.175395.175395.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nPASVSSPEPPKSVPVC[160]c[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_PLD_Slot2-38_1_8058_diatracer.176408.176408.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nTLEFPFVNGSAEIM[147]Lc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_PLD_Slot2-38_1_8058_diatracer.176486.176486.2 [INFO:] Please specify modification and rerun PTMProphet ... ​ [INFO:] processed 13000/82198 spectrum_queries [ERROR:] Cannot initialize for sequence: nEIARTVQILGADFILSLGDNFYc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_PLD_Slot2-38_1_8058_diatracer.177188.177188.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nANKVNWQSYLQGQMISAEDLC[160]c[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_PLD_Slot2-38_1_8058_diatracer.180863.180863.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nGGSAIGVLETVDQASTNc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_PLD_Slot2-38_1_8058_diatracer.183259.183259.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nLHQM[147]IELSSKAAVNGc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_PLD_Slot2-38_1_8058_diatracer.184981.184981.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nVLTQM[147]GSPLNPISSVSc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_PLD_Slot2-38_1_8058_diatracer.186316.186316.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nQSVIQFSPPFPGAQAPLc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_PLD_Slot2-38_1_8058_diatracer.189090.189090.3 [INFO:] Please specify modification and rerun PTMProphet ... ​ [INFO:] processed 14000/82198 spectrum_queries [ERROR:] Cannot initialize for sequence: nTHGTFNGQASGTAc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_PLD_Slot2-38_1_8058_diatracer.190841.190841.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nETDTM[147]RGYESc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_PLD_Slot2-38_1_8058_diatracer.190996.190996.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nEEDDSIHFDNc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_PLD_Slot2-38_1_8058_diatracer.196049.196049.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: n[43]MPILC[160]GSLSWGASSAMEc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_PLD_Slot2-38_1_8058_diatracer.198014.198014.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nETTTTKGADIHAc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_PLD_Slot2-38_1_8058_diatracer.199140.199140.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nM[147]AQTLANFYQc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_PLD_Slot2-38_1_8058_diatracer.199894.199894.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nQSVIQFSPPFPGAQAPLc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_PLD_Slot2-38_1_8058_diatracer.202007.202007.3 [INFO:] Please specify modification and rerun PTMProphet ... ​ [INFO:] processed 15000/82198 spectrum_queries [ERROR:] Cannot initialize for sequence: nPM[147]ADAPPSAPEGSGDLLYc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_PLD_Slot2-38_1_8058_diatracer.202745.202745.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nTFYVAVDEFVVAEQPGPMPLAMAc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_PLD_Slot2-38_1_8058_diatracer.204730.204730.4 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nDKLAQQQAAAAAAAAAAASQc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_PLD_Slot2-38_1_8058_diatracer.206234.206234.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nYAAYHDLPMSc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_PLD_Slot2-38_1_8058_diatracer.208685.208685.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nTPATQAIHIFSc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_PLD_Slot2-38_1_8058_diatracer.209432.209432.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nESQVQTQVQGEAGGEAGVPc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_PLD_Slot2-38_1_8058_diatracer.209773.209773.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nLTPAEEENNSFQRLSPc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_PLD_Slot2-38_1_8058_diatracer.211794.211794.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nQSVIQFSPPFPGAQAPLc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_PLD_Slot2-38_1_8058_diatracer.212854.212854.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nYAAYHDLPMSc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_PLD_Slot2-38_1_8058_diatracer.213033.213033.2 [INFO:] Please specify modification and rerun PTMProphet ... ​ [INFO:] processed 16000/82198 spectrum_queries [ERROR:] Cannot initialize for sequence: nIQSSGGPLQVM[147]GASLPEIc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_PLD_Slot2-38_1_8058_diatracer.213611.213611.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nHYSGVISHMLESDMIKc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_PLD_Slot2-38_1_8058_diatracer.216927.216927.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nLFESGLAGLVTAPLAQLAQGSWSEAc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_PLD_Slot2-38_1_8058_diatracer.218517.218517.4 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nRTGTESSASSLAAAGAAGSDGLGSLTEAc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_PLD_Slot2-38_1_8058_diatracer.218979.218979.4 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nC[160]C[160]PAIGTLYNc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_PLD_Slot2-38_1_8058_diatracer.223931.223931.2 [INFO:] Please specify modification and rerun PTMProphet ... ​ [INFO:] processed 17000/82198 spectrum_queries [ERROR:] Cannot initialize for sequence: nLHILDLVAGFC[160]QTFFLc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_PLD_Slot2-38_1_8058_diatracer.225614.225614.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nM[147]SQSGAVSC[160]C[160]PGATNGSLGRSDGVAc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_PLD_Slot2-38_1_8058_diatracer.226511.226511.4 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nIVQAEGEAEAAKc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_PLD_Slot2-38_1_8058_diatracer.228549.228549.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nVVSNFILQALQGEPLTVc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_PLD_Slot2-38_1_8058_diatracer.231345.231345.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nSAM[147]AGEQTGRHc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_PLD_Slot2-38_1_8058_diatracer.232307.232307.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nVYENVGLM[147]QQQKSFRc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_PLD_Slot2-38_1_8058_diatracer.233908.233908.3 [INFO:] Please specify modification and rerun PTMProphet ... ​ [INFO:] processed 18000/82198 spectrum_queries [ERROR:] Cannot initialize for sequence: nAQLYATNAILNDLAGMDVc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_PLD_Slot2-38_1_8058_diatracer.236319.236319.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nPAGPGPGPPc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_PLD_Slot2-38_1_8058_diatracer.242140.242140.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nLAMLTGVLLANGc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_PLD_Slot2-38_1_8058_diatracer.242321.242321.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nSAIHDTEMVVPLELGNGHM[147]Pc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_PLD_Slot2-38_1_8058_diatracer.249268.249268.2 [INFO:] Please specify modification and rerun PTMProphet ... ​ [INFO:] processed 19000/82198 spectrum_queries [ERROR:] Cannot initialize for sequence: nAGEGTYALDSE[172]SC[160]MEc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_PLD_Slot2-38_1_8058_diatracer.265159.265159.2 [INFO:] Please specify modification and rerun PTMProphet ... ​ [INFO:] processed 20000/82198 spectrum_queries [ERROR:] Cannot initialize for sequence: nKEPKVQAGSE[216]IE[216]AGTc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_PLD_Slot2-38_1_8058_diatracer.278998.278998.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nSFSAISESSADNTLFSc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_PLD_Slot2-38_1_8058_diatracer.282117.282117.2 [INFO:] Please specify modification and rerun PTMProphet ... ​ [INFO:] processed 21000/82198 spectrum_queries [ERROR:] Cannot initialize for sequence: nDLVDFFSAEPGM[147]PAFAc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_PLD_Slot2-38_1_8058_diatracer.287045.287045.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nM[147]LGPQSSLQTHSIENc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_PLD_Slot2-38_1_8058_diatracer.289748.289748.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nVGELHHLSPEKFTLPc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_PLD_Slot2-38_1_8058_diatracer.291369.291369.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nQLIDEGIAPEEGGVDAPc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_PLD_Slot2-38_1_8058_diatracer.295699.295699.2 [INFO:] Please specify modification and rerun PTMProphet ... ​ [INFO:] processed 22000/82198 spectrum_queries [ERROR:] Cannot initialize for sequence: nC[160]VSAPSALSC[160]TDVIEPc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_PLD_Slot2-38_1_8058_diatracer.300607.300607.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nPLAVLWLC[160]QLc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_PLD_Slot2-38_1_8058_diatracer.304828.304828.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nELEEGSLEQATIMDQVAc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_PLD_Slot2-38_1_8058_diatracer.307080.307080.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nSGARHSVGGGGAAAPAGQPGGGPc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_PLD_Slot2-38_1_8058_diatracer.309504.309504.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nSLMEDAEDLVFc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_PLD_Slot2-38_1_8058_diatracer.309874.309874.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nPWPLHSSPGAAQPPEGGGLc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_PLD_Slot2-38_1_8058_diatracer.311375.311375.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nWIEAMEDASVLc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_PLD_Slot2-38_1_8058_diatracer.311775.311775.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nFTVQM[147]PTSQSPc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_PLD_Slot2-38_1_8058_diatracer.312783.312783.2 [INFO:] Please specify modification and rerun PTMProphet ... ​ [INFO:] processed 23000/82198 spectrum_queries [ERROR:] Cannot initialize for sequence: nSGADSDESADGAAAAAE[216]LE[216]PGEVTAAc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_PLD_Slot2-38_1_8058_diatracer.318614.318614.4 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nRDPEMAM[147]DLEc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_PLD_Slot2-38_1_8058_diatracer.320680.320680.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nQQVC[160]LGYSNYc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_PLD_Slot2-38_1_8058_diatracer.320994.320994.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nHLTNSAC[160]DEHPc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_PLD_Slot2-38_1_8058_diatracer.321325.321325.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nLSPSGGAGAAAGDAMc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_PLD_Slot2-38_1_8058_diatracer.323530.323530.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nTLNINGQIPTGEGVSTLSTc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_PLD_Slot2-38_1_8058_diatracer.323814.323814.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nIC[160]LFASLSHSPRDIHC[160]c[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_PLD_Slot2-38_1_8058_diatracer.324111.324111.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nPGAAEC[160]AAGLGERc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_PLD_Slot2-38_1_8058_diatracer.324929.324929.2 [INFO:] Please specify modification and rerun PTMProphet ... ​ [INFO:] processed 24000/82198 spectrum_queries [ERROR:] Cannot initialize for sequence: nGVAPDSKTTGSSYPFQLDc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_PLD_Slot2-38_1_8058_diatracer.327129.327129.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nEIQGNSTFPNNFGFNIQc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_PLD_Slot2-38_1_8058_diatracer.329707.329707.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nGLAAMEEDTLEELGGAEAEc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_PLD_Slot2-38_1_8058_diatracer.332155.332155.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nGC[160]QRPVM[147]TWSc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_PLD_Slot2-38_1_8058_diatracer.332387.332387.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nGAHTHAHTQTHTc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_PLD_Slot2-38_1_8058_diatracer.333068.333068.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nNMTAITAADAM[147]Qc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_PLD_Slot2-38_1_8058_diatracer.333097.333097.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nAASAATIFRAYNc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_PLD_Slot2-38_1_8058_diatracer.333227.333227.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nIC[160]DLNRITEQc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_PLD_Slot2-38_1_8058_diatracer.333741.333741.2 [INFO:] Please specify modification and rerun PTMProphet ... ​ [INFO:] processed 25000/82198 spectrum_queries [ERROR:] Cannot initialize for sequence: nQTQGEEM[147]NEEc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_PLD_Slot2-38_1_8058_diatracer.337697.337697.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nRDNDETNQQGAc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_PLD_Slot2-38_1_8058_diatracer.341537.341537.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nQVLSNTLDNIAYIMPGLc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_PLD_Slot2-38_1_8058_diatracer.342329.342329.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nEDGM[147]DLGSDAGSSSSSSRASc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_PLD_Slot2-38_1_8058_diatracer.342583.342583.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nSGALSEAAVSAPEAc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_PLD_Slot2-38_1_8058_diatracer.342702.342702.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nQATD[158]LLGWEE[172]QSFYVAVDEFTc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_PLD_Slot2-38_1_8058_diatracer.342849.342849.4 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nLEDVLWLQEVSNLSEWLSPSPGPc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_PLD_Slot2-38_1_8058_diatracer.343373.343373.4 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nGTTPPWPLSQYc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_PLD_Slot2-38_1_8058_diatracer.343832.343832.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nTGGGGGPSC[160]PWPEc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_PLD_Slot2-38_1_8058_diatracer.344660.344660.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nDSFSGPSTSGSNHc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_PLD_Slot2-38_1_8058_diatracer.347541.347541.2 [INFO:] Please specify modification and rerun PTMProphet ... ​ [INFO:] processed 26000/82198 spectrum_queries [ERROR:] Cannot initialize for sequence: nFSC[160]IVVGYKEEETPTWc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_PLD_Slot2-38_1_8058_diatracer.348148.348148.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nLEAEQM[147]QQLVGHGQPSC[160]LESSFGc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_PLD_Slot2-38_1_8058_diatracer.349709.349709.4 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nGDGTGGVTGYFTVTLYC[160]Ec[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_PLD_Slot2-38_1_8058_diatracer.351086.351086.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nVGGPPPKFPNNLDPDAFPNSDFDSc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_PLD_Slot2-38_1_8058_diatracer.353354.353354.4 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nGPEALQEFQQTc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_PLD_Slot2-38_1_8058_diatracer.358893.358893.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nMISEVTGGSHDVc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_PLD_Slot2-38_1_8058_diatracer.359339.359339.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nLLDSSDPPISASc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_PLD_Slot2-38_1_8058_diatracer.359523.359523.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nLESEALGGGTAPPc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_PLD_Slot2-38_1_8058_diatracer.360123.360123.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nLAVIASHIQERc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_PLD_Slot2-38_1_8058_diatracer.361832.361832.3 [INFO:] Please specify modification and rerun PTMProphet ... ​ [INFO:] processed 27000/82198 spectrum_queries [ERROR:] Cannot initialize for sequence: nM[147]DGM[147]DASGLGRGc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_PLD_Slot2-38_1_8058_diatracer.362728.362728.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nTHGTFNGQASGTAc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_PLD_Slot2-38_1_8058_diatracer.364754.364754.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nAAASALENGWPEAc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_PLD_Slot2-38_1_8058_diatracer.365073.365073.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nLESEALGGGTAPPc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_PLD_Slot2-38_1_8058_diatracer.365387.365387.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nC[160]GPRFKSLLNGc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_PLD_Slot2-38_1_8058_diatracer.365823.365823.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nSSQLPARPSSALGDLLSc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_PLD_Slot2-38_1_8058_diatracer.367187.367187.4 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nAAASALENGWPEAc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_PLD_Slot2-38_1_8058_diatracer.367713.367713.3 [INFO:] Please specify modification and rerun PTMProphet ... ​ [INFO:] processed 28000/82198 spectrum_queries [ERROR:] Cannot initialize for sequence: nIM[147]TDIISIGSDNEMHENDESVTRc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_PLD_Slot2-38_1_8058_diatracer.387450.387450.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nVNDSNELGGLTTSGSAELc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_PLD_Slot2-38_1_8058_diatracer.394665.394665.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nEISEVAFVHEGVAPLEc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_PLD_Slot2-38_1_8058_diatracer.396835.396835.2 [INFO:] Please specify modification and rerun PTMProphet ... ​ [INFO:] processed 29000/82198 spectrum_queries [ERROR:] Cannot initialize for sequence: nNWPNNLM[147]LFDTNNMc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_PLD_Slot2-38_1_8058_diatracer.397243.397243.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nTC[160]LSTNGPASTLNDVAQc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_PLD_Slot2-38_1_8058_diatracer.414026.414026.2 [INFO:] Please specify modification and rerun PTMProphet ... ​ [INFO:] processed 30000/82198 spectrum_queries [ERROR:] Cannot initialize for sequence: nDGVSASLSSPSQTM[147]QIDc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_PLD_Slot2-38_1_8058_diatracer.415479.415479.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nGDQADLDVNC[160]LQNNLTc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_PLD_Slot2-38_1_8058_diatracer.415728.415728.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nYFLNEGEEGPDc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_PLD_Slot2-38_1_8058_diatracer.427377.427377.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nTLAWPSSLDM[147]VAc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_PLD_Slot2-38_1_8058_diatracer.429138.429138.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nTQEWGLM[147]ILDEVHTIPVc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_PLD_Slot2-38_1_8058_diatracer.429218.429218.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nFSIAFSIVGMFASHAVGSLSVFFC[160]Ac[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_PLD_Slot2-38_1_8058_diatracer.429527.429527.4 [INFO:] Please specify modification and rerun PTMProphet ... ​ [INFO:] processed 31000/82198 spectrum_queries [ERROR:] Cannot initialize for sequence: nDDVPVFDM[147]LLMYDAMPDc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_PLD_Slot2-38_1_8058_diatracer.436741.436741.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nLLDFAAFLTTLSc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_PLD_Slot2-38_1_8058_diatracer.440923.440923.2 [INFO:] Please specify modification and rerun PTMProphet ... ​ [INFO:] processed 32000/82198 spectrum_queries [ERROR:] Cannot initialize for sequence: nDVLGMAQDEM[147]AQc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_PLD_Slot2-38_1_8058_diatracer.441617.441617.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nVEIPQEVTLNQc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_PLD_Slot2-38_1_8058_diatracer.443036.443036.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nGIAVAC[160]DAQGPGRc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_PLD_Slot2-38_1_8058_diatracer.443522.443522.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nLVLVLLWLEGRc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_PLD_Slot2-38_1_8058_diatracer.445467.445467.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nEAEPPMSFC[160]GRc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_PLD_Slot2-38_1_8058_diatracer.445810.445810.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nEEDGFAAAAAAATALSVGC[160]SKc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_PLD_Slot2-38_1_8058_diatracer.446866.446866.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nFSLTMYGDENEc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_PLD_Slot2-38_1_8058_diatracer.449053.449053.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nDDVPVFDM[147]LLMYDAMPDc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_PLD_Slot2-38_1_8058_diatracer.450111.450111.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nFSLTMYGDENEc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_PLD_Slot2-38_1_8058_diatracer.451281.451281.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nAAIEETLLLESSc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_PLD_Slot2-38_1_8058_diatracer.452439.452439.2 [INFO:] Please specify modification and rerun PTMProphet ... ​ [INFO:] processed 33000/82198 spectrum_queries [ERROR:] Cannot initialize for sequence: nKIC[160]SC[160]FGVTWc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_PLD_Slot2-38_1_8058_diatracer.453880.453880.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nVSLEEIYSGC[160]Tc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_PLD_Slot2-38_1_8058_diatracer.453936.453936.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nLAYDAMEVQDEc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_PLD_Slot2-38_1_8058_diatracer.454840.454840.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nVSLEEIYSGC[160]Tc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_PLD_Slot2-38_1_8058_diatracer.458402.458402.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nGSVQSMDQGEDADc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_PLD_Slot2-38_1_8058_diatracer.459877.459877.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nC[160]IAPGAAEVSLM[147]Nc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_PLD_Slot2-38_1_8058_diatracer.460342.460342.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nEAGIENVNSTKFc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_PLD_Slot2-38_1_8058_diatracer.460965.460965.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nPDEPTAPSGGGKTDSGAGGAGAEc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_PLD_Slot2-38_1_8058_diatracer.460970.460970.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nLGSSNPPRSASQVPGTTGMHHYAQLKc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_PLD_Slot2-38_1_8058_diatracer.462363.462363.4 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nSNVSPFSESHRQSALDPAc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_PLD_Slot2-38_1_8058_diatracer.465024.465024.3 [INFO:] Please specify modification and rerun PTMProphet ... ​ [INFO:] processed 34000/82198 spectrum_queries [ERROR:] Cannot initialize for sequence: nYELAHPPEEWc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_PLD_Slot2-38_1_8058_diatracer.465412.465412.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nEKRPC[160]TSM[147]HFQLPIQAc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_PLD_Slot2-38_1_8058_diatracer.465671.465671.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nQTMSHDSQAVASSLQSC[160]Fc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_PLD_Slot2-38_1_8058_diatracer.468761.468761.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nTQEWGLM[147]ILDEVHTIPVc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_PLD_Slot2-38_1_8058_diatracer.469315.469315.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nGIINRGLEDGESWEYQIc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_PLD_Slot2-38_1_8058_diatracer.470791.470791.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nLEDQAATPTGLGSc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_PLD_Slot2-38_1_8058_diatracer.471885.471885.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nLEDQAATPTGLGSc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_PLD_Slot2-38_1_8058_diatracer.474117.474117.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nTWGGVVTAAM[147]VIALAVYM[147]Gc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_PLD_Slot2-38_1_8058_diatracer.474266.474266.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nVEQLINAM[147]SIESc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_PLD_Slot2-38_1_8058_diatracer.475885.475885.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nQM[147]LDDIPEDNTc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_PLD_Slot2-38_1_8058_diatracer.476084.476084.2 [INFO:] Please specify modification and rerun PTMProphet ... ​ [INFO:] processed 35000/82198 spectrum_queries [ERROR:] Cannot initialize for sequence: nGQNVGPGPPAQTEAc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_PLD_Slot2-38_1_8058_diatracer.477252.477252.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nFSPPLPASGc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_PLD_Slot2-38_1_8058_diatracer.478515.478515.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nSISLHKSGc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_PLD_Slot2-38_1_8058_diatracer.478719.478719.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nNGLFSTLVM[147]TNKc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_PLD_Slot2-38_1_8058_diatracer.478882.478882.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nTGEM[147]AGVALc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_PLD_Slot2-38_1_8058_diatracer.479551.479551.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nTLFAPVNSPGAAGPGVPLDc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_PLD_Slot2-38_1_8058_diatracer.480033.480033.4 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nNPTAFYLC[160]ASSIc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_PLD_Slot2-38_1_8058_diatracer.481691.481691.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nC[160]SGTISAHc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_PLD_Slot2-38_1_8058_diatracer.483498.483498.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nGAIEDMGFDATLSc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_PLD_Slot2-38_1_8058_diatracer.486275.486275.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nGVGAVAAAAAAAc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_PLD_Slot2-38_1_8058_diatracer.486844.486844.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nVQHISVANVVPEc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_PLD_Slot2-38_1_8058_diatracer.487311.487311.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nAMAPSPSLVQVYTc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_PLD_Slot2-38_1_8058_diatracer.489581.489581.3 [INFO:] Please specify modification and rerun PTMProphet ... ​ [INFO:] processed 36000/82198 spectrum_queries [ERROR:] Cannot initialize for sequence: nFSPPLPASGc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_PLD_Slot2-38_1_8058_diatracer.494828.494828.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nQLLAPGNSAc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_PLD_Slot2-38_1_8058_diatracer.496821.496821.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nNISMLNTIFTYc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_PLD_Slot2-38_1_8058_diatracer.497237.497237.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nEEAVGTATAc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_PLD_Slot2-38_1_8058_diatracer.499147.499147.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: n[43]EM[147]GGSQEEIGLC[160]c[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_PLD_Slot2-38_1_8058_diatracer.499315.499315.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nLQEGAPAPGc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_PLD_Slot2-38_1_8058_diatracer.499930.499930.2 [INFO:] Please specify modification and rerun PTMProphet ... ​ [INFO:] processed 37000/82198 spectrum_queries [ERROR:] Cannot initialize for sequence: nNNLSFIETSALDSTNVE[172]EAFc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_PLD_Slot2-38_1_8058_diatracer.503927.503927.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nNNLSFIETSALDSTNVE[172]EAFc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_PLD_Slot2-38_1_8058_diatracer.505778.505778.2 [INFO:] Please specify modification and rerun PTMProphet ... ​ [INFO:] processed 38000/82198 spectrum_queries [ERROR:] Cannot initialize for sequence: n[43]SGLSGTSSSSVSLGDLPANc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_PLD_Slot2-38_1_8058_diatracer.526999.526999.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nIQPSTVYVC[160]NENQSAVc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_PLD_Slot2-38_1_8058_diatracer.531555.531555.2 [INFO:] Please specify modification and rerun PTMProphet ... ​ [INFO:] processed 39000/82198 spectrum_queries [ERROR:] Cannot initialize for sequence: nSHINPTGTVLLQLENTMQMSLKDLLc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_PLD_Slot2-38_1_8058_diatracer.542825.542825.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nSHINPTGTVLLQLENTMQMSLKDLLc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_PLD_Slot2-38_1_8058_diatracer.544505.544505.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nLEDLGAALYRLSTEEKc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_PLD_Slot2-38_1_8058_diatracer.548118.548118.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nGAAC[160]SPSPGGGC[160]VPGc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_PLD_Slot2-38_1_8058_diatracer.550575.550575.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nGSVQSM[147]DQGEDADc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_PLD_Slot2-38_1_8058_diatracer.551878.551878.2 [INFO:] Please specify modification and rerun PTMProphet ... ​ [INFO:] processed 40000/82198 spectrum_queries [ERROR:] Cannot initialize for sequence: nPHYLHGATGVTGPc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_PLD_Slot2-38_1_8058_diatracer.556475.556475.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nSLAC[160]LAM[147]WLTRc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_PLD_Slot2-38_1_8058_diatracer.560099.560099.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nSVLIVSIPSTNDRc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_PLD_Slot2-38_1_8058_diatracer.562994.562994.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nGPHHLDNSSPGPGSc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_PLD_Slot2-38_1_8058_diatracer.563709.563709.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nSLGLSSQTPMLTSc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_PLD_Slot2-38_1_8058_diatracer.563983.563983.2 [INFO:] Please specify modification and rerun PTMProphet ... ​ [INFO:] processed 41000/82198 spectrum_queries [ERROR:] Cannot initialize for sequence: nLGDTPSPPYPATPAGDIM[147]ELc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_PLD_Slot2-38_1_8058_diatracer.569020.569020.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nDEQGISGASEPAAGGc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_PLD_Slot2-38_1_8058_diatracer.571507.571507.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nEMGGSQEEIGLC[160]c[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_PLD_Slot2-38_1_8058_diatracer.574342.574342.2 [INFO:] Please specify modification and rerun PTMProphet ... ​ [INFO:] processed 42000/82198 spectrum_queries [ERROR:] Cannot initialize for sequence: nVPLDGSTPDVLHSc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_PLD_Slot2-38_1_8058_diatracer.578049.578049.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nITVVGVGAVGM[147]AC[160]AISILMKc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_PLD_Slot2-38_1_8058_diatracer.579058.579058.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nVQEEDQFDVM[147]GAc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_PLD_Slot2-38_1_8058_diatracer.582506.582506.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nLNTVEQSASQVAGD[158]IRLALQKNDEMc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_PLD_Slot2-38_1_8058_diatracer.584287.584287.4 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nESSALRQAFQIEAPQM[147]APAc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_PLD_Slot2-38_1_8058_diatracer.585241.585241.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nLNVAAELVQM[147]HLc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_PLD_Slot2-38_1_8058_diatracer.585462.585462.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nC[160]LLWLLWPLWPLARVDc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_PLD_Slot2-38_1_8058_diatracer.587090.587090.3 [INFO:] Please specify modification and rerun PTMProphet ... ​ [INFO:] processed 43000/82198 spectrum_queries [ERROR:] Cannot initialize for sequence: nSLGLSSQTPMLTSc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_PLD_Slot2-38_1_8058_diatracer.590952.590952.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nGQAPLAPTHTPELc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_PLD_Slot2-38_1_8058_diatracer.591162.591162.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nDKENALMPNWYELGQM[147]SAc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_PLD_Slot2-38_1_8058_diatracer.594106.594106.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nMLEFFIDVAREC[160]FNIGNc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_PLD_Slot2-38_1_8058_diatracer.596702.596702.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nSILDFTTFGAAVFc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_PLD_Slot2-38_1_8058_diatracer.598604.598604.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nMTFPC[160]EM[147]TPPMc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_PLD_Slot2-38_1_8058_diatracer.599448.599448.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nLGDTPSPPYPATPAGDIM[147]ELc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_PLD_Slot2-38_1_8058_diatracer.600485.600485.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nTVIEIINM[147]SVSGIc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_PLD_Slot2-38_1_8058_diatracer.601041.601041.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nGAAAAGGGGGGAAAc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_PLD_Slot2-38_1_8058_diatracer.601681.601681.2 [INFO:] Please specify modification and rerun PTMProphet ... ​ [INFO:] processed 44000/82198 spectrum_queries [ERROR:] Cannot initialize for sequence: nQDIDLGAGRc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_PLD_Slot2-38_1_8058_diatracer.604755.604755.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nLHYELEATTALNc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_PLD_Slot2-38_1_8058_diatracer.605808.605808.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nASVRM[147]ISDLIAGGIQPLQc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_PLD_Slot2-38_1_8058_diatracer.606653.606653.4 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nYVALLLSTKLWEc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_PLD_Slot2-38_1_8058_diatracer.607285.607285.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nGEIGLPGPPGHDGEc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_PLD_Slot2-38_1_8058_diatracer.607516.607516.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nMVLGAGTGNGALGSEc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_PLD_Slot2-38_1_8058_diatracer.609969.609969.3 [INFO:] Please specify modification and rerun PTMProphet ... ​ [INFO:] processed 45000/82198 spectrum_queries [ERROR:] Cannot initialize for sequence: nTQITVGMSSc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_PLD_Slot2-38_1_8058_diatracer.619235.619235.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nSAVNLYSLSPPGRc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_PLD_Slot2-38_1_8058_diatracer.620215.620215.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nLFIPDLELNVTAAc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_PLD_Slot2-38_1_8058_diatracer.620689.620689.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nLLDLGSGQNc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_PLD_Slot2-38_1_8058_diatracer.622730.622730.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: n[43]NSSPAGTPSc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_PLD_Slot2-38_1_8058_diatracer.623498.623498.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nPQAAPAPTPAQSPEAc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_PLD_Slot2-38_1_8058_diatracer.625757.625757.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nTEM[147]APGASQGDQQc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_PLD_Slot2-38_1_8058_diatracer.625962.625962.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nGEIGLPGPPGHDGEc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_PLD_Slot2-38_1_8058_diatracer.626023.626023.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nMVLGAGTGNGALGSEc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_PLD_Slot2-38_1_8058_diatracer.627236.627236.3 [INFO:] Please specify modification and rerun PTMProphet ... ​ [INFO:] processed 46000/82198 spectrum_queries [ERROR:] Cannot initialize for sequence: nASYLEIYNEQVSAVEGTQPTPc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_PLD_Slot2-38_1_8058_diatracer.630766.630766.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: n[43]MMSPSPLAIM[147]LIVPLIM[147]VGDVc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_PLD_Slot2-38_1_8058_diatracer.633029.633029.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nC[160]PEALFQPSFLGME[216]SC[160]GIHE[216]TTFc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_PLD_Slot2-38_1_8058_diatracer.643969.643969.3 [INFO:] Please specify modification and rerun PTMProphet ... ​ [INFO:] processed 47000/82198 spectrum_queries [ERROR:] Cannot initialize for sequence: nTTEEALHASHGFMWYTc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_PLD_Slot2-38_1_8058_diatracer.645651.645651.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nIGEERSLC[160]MINYNVNITEDEDPANc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_PLD_Slot2-38_1_8058_diatracer.648537.648537.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nVFSAESGYGIPFC[160]AEPC[160]SRVTVC[160]HLQAVPVC[160]M[147]PVc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_PLD_Slot2-38_1_8058_diatracer.650784.650784.4 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nDITC[160]QNTAPC[160]M[147]YDNHc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_PLD_Slot2-38_1_8058_diatracer.658660.658660.2 [INFO:] Please specify modification and rerun PTMProphet ... ​ [INFO:] processed 48000/82198 spectrum_queries [ERROR:] Cannot initialize for sequence: nDAPMQAGVPWLLLTPSGSc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_PLD_Slot2-38_1_8058_diatracer.664333.664333.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nGM[147]PASRHIWEPEC[160]AVVc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_PLD_Slot2-38_1_8058_diatracer.666280.666280.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nHM[147]AQM[147]ANQDPESIMFNc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_PLD_Slot2-38_1_8058_diatracer.669362.669362.2 [INFO:] Please specify modification and rerun PTMProphet ... ​ [INFO:] processed 49000/82198 spectrum_queries [ERROR:] Cannot initialize for sequence: nLTM[147]LQETLNLPPc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_PLD_Slot2-38_1_8058_diatracer.677586.677586.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nAALINDISFM[147]SAPc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_PLD_Slot2-38_1_8058_diatracer.679023.679023.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nC[160]LFLGELKDDINc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_PLD_Slot2-38_1_8058_diatracer.679942.679942.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nAALINDISFM[147]SAPc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_PLD_Slot2-38_1_8058_diatracer.681218.681218.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nVLQDSDLSSLGEFLPPVPLIc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_PLD_Slot2-38_1_8058_diatracer.684744.684744.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nAALINDISFM[147]SAPc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_PLD_Slot2-38_1_8058_diatracer.685608.685608.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nWMLSWVASGYGKc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_PLD_Slot2-38_1_8058_diatracer.686431.686431.2 [INFO:] Please specify modification and rerun PTMProphet ... ​ [INFO:] processed 50000/82198 spectrum_queries [ERROR:] Cannot initialize for sequence: n[43]MVSLVSGASGYSATSTSSFKKc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_PLD_Slot2-38_1_8058_diatracer.693668.693668.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nVQLAGC[160]SEVAGGVGNc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_PLD_Slot2-38_1_8058_diatracer.694712.694712.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nTQIVYSDDVYKENLVDGFc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_PLD_Slot2-38_1_8058_diatracer.694833.694833.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nVEQHKYIEEVEc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_PLD_Slot2-38_1_8058_diatracer.696110.696110.2 [INFO:] Please specify modification and rerun PTMProphet ... ​ [INFO:] processed 51000/82198 spectrum_queries [ERROR:] Cannot initialize for sequence: nGGAGAPPAAEGAEM[147]Rc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_PLD_Slot2-38_1_8058_diatracer.702964.702964.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nSSIYGADSANYATNc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_PLD_Slot2-38_1_8058_diatracer.704135.704135.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nFLELQKVASSSSGNNFLSGSPc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_PLD_Slot2-38_1_8058_diatracer.706527.706527.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: n[43]GDHLDLLLGVVLMAGPVFGIc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_PLD_Slot2-38_1_8058_diatracer.707406.707406.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nVQLAGC[160]SEVAGGVGNc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_PLD_Slot2-38_1_8058_diatracer.712327.712327.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nQPFADLPDLQPPQPSSTGSEc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_PLD_Slot2-38_1_8058_diatracer.714508.714508.3 [INFO:] Please specify modification and rerun PTMProphet ... ​ [INFO:] processed 52000/82198 spectrum_queries [ERROR:] Cannot initialize for sequence: nLERTSSVSPSTAEPELSIVFc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_PLD_Slot2-38_1_8058_diatracer.718129.718129.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nEDSFASGESQAAC[160]TMSWDFSHPFMC[160]c[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_PLD_Slot2-38_1_8058_diatracer.721968.721968.4 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nYQLFFFSFLWc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_PLD_Slot2-38_1_8058_diatracer.722202.722202.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nQQQPQMGVTGQRM[147]TVNNLTc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_PLD_Slot2-38_1_8058_diatracer.722418.722418.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nNESGSRSNGRDSPc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_PLD_Slot2-38_1_8058_diatracer.722531.722531.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nC[160]LFLGELKDDINc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_PLD_Slot2-38_1_8058_diatracer.723881.723881.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nPPTSGQHSAMAASSGGc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_PLD_Slot2-38_1_8058_diatracer.726954.726954.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nDPEPDESLLPDGALc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_PLD_Slot2-38_1_8058_diatracer.727294.727294.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nLVHAGPGVPGEGGSGGGc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_PLD_Slot2-38_1_8058_diatracer.727779.727779.3 [INFO:] Please specify modification and rerun PTMProphet ... ​ [INFO:] processed 53000/82198 spectrum_queries [ERROR:] Cannot initialize for sequence: nLHPEDFPEEGISSc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_PLD_Slot2-38_1_8058_diatracer.728538.728538.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nEGGLAASC[160]GLc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_PLD_Slot2-38_1_8058_diatracer.729802.729802.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nM[147]LWQRIHQDFAc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_PLD_Slot2-38_1_8058_diatracer.732440.732440.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nALYVVHPTSc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_PLD_Slot2-38_1_8058_diatracer.733029.733029.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nGAAAAGGGGGGAAAc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_PLD_Slot2-38_1_8058_diatracer.733821.733821.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nLGAEDPDLILLTGC[160]SAFTHc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_PLD_Slot2-38_1_8058_diatracer.736171.736171.4 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nILSNGSESIEM[147]GEDc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_PLD_Slot2-38_1_8058_diatracer.737516.737516.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nVFEEFVQGc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_PLD_Slot2-38_1_8058_diatracer.740946.740946.2 [INFO:] Please specify modification and rerun PTMProphet ... ​ [INFO:] processed 54000/82198 spectrum_queries [ERROR:] Cannot initialize for sequence: nLFHPILAPc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_PLD_Slot2-38_1_8058_diatracer.742556.742556.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nEGGLAASC[160]GLc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_PLD_Slot2-38_1_8058_diatracer.743021.743021.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nGQRFDPAM[147]FNISPGAVQFc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_PLD_Slot2-38_1_8058_diatracer.748994.748994.4 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nQPMETTQPGVSQSNc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_PLD_Slot2-38_1_8058_diatracer.749403.749403.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nLIADASVPGSDYINAc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_PLD_Slot2-38_1_8058_diatracer.749453.749453.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nFTAAATSTPVSSSQSAPPMSPc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_PLD_Slot2-38_1_8058_diatracer.749468.749468.4 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nGAGTGLSEGLSc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_PLD_Slot2-38_1_8058_diatracer.750821.750821.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nLGLLAGSDKPc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_PLD_Slot2-38_1_8058_diatracer.751772.751772.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nVPSVQNPHEC[160]LINc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_PLD_Slot2-38_1_8058_diatracer.752481.752481.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nGPPELILTASc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_PLD_Slot2-38_1_8058_diatracer.752611.752611.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nPGLPGQPAVSc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_PLD_Slot2-38_1_8058_diatracer.753204.753204.2 [INFO:] Please specify modification and rerun PTMProphet ... ​ [INFO:] processed 55000/82198 spectrum_queries [ERROR:] Cannot initialize for sequence: nM[147]PSTTAISSNISSPVc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_PLD_Slot2-38_1_8058_diatracer.755398.755398.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nVLGLTVSQNc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_PLD_Slot2-38_1_8058_diatracer.756307.756307.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nAC[160]C[160]SLGGEQGQPVHMGDPc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_PLD_Slot2-38_1_8058_diatracer.769752.769752.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nLTNSHAM[147]GSFSGVAGGTVGGNc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_PLD_Slot2-38_1_8058_diatracer.770797.770797.2 [INFO:] Please specify modification and rerun PTMProphet ... ​ [INFO:] processed 56000/82198 spectrum_queries [ERROR:] Cannot initialize for sequence: nVPATSM[147]YAGFPLM[147]C[160]STANc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_PLD_Slot2-38_1_8058_diatracer.770988.770988.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nEDSFGMLLFGSM[147]STLNVc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_PLD_Slot2-38_1_8058_diatracer.777923.777923.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nM[147]VETFAVTFNTLDAIESc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_PLD_Slot2-38_1_8058_diatracer.786055.786055.2 [INFO:] Please specify modification and rerun PTMProphet ... ​ [INFO:] processed 57000/82198 spectrum_queries [ERROR:] Cannot initialize for sequence: nAWGGSWGPGNPIFPQLTLc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_PLD_Slot2-38_1_8058_diatracer.789971.789971.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nDGNFLNIPQQSQSWFLc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_PLD_Slot2-38_1_8058_diatracer.790034.790034.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nELLSPGAPLTKQSRSPSFNM[147]QLISQVc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_PLD_Slot2-38_1_8058_diatracer.790623.790623.3 [INFO:] Please specify modification and rerun PTMProphet ... ​ [INFO:] processed 58000/82198 spectrum_queries [ERROR:] Cannot initialize for sequence: nQELPSENEPIYFHVPRLNSYKDPPGc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_PLD_Slot2-38_1_8058_diatracer.806973.806973.4 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nESQPGSGAVEM[147]ESVc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_PLD_Slot2-38_1_8058_diatracer.807100.807100.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nTPIQAGGYGAFPVHc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_PLD_Slot2-38_1_8058_diatracer.809019.809019.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nEEEGGGGGGSPAAAAAAAc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_PLD_Slot2-38_1_8058_diatracer.815956.815956.2 [INFO:] Please specify modification and rerun PTMProphet ... ​ [INFO:] processed 59000/82198 spectrum_queries [ERROR:] Cannot initialize for sequence: nPEIHVGGGASYSFHc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_PLD_Slot2-38_1_8058_diatracer.817384.817384.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nLIQNGHINMQLPAGNPNPFSPc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_PLD_Slot2-38_1_8058_diatracer.819029.819029.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nC[160]EDNLSSLM[147]SSTEc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_PLD_Slot2-38_1_8058_diatracer.823083.823083.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nYNLKNFMVINSVAFDHAGTAc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_PLD_Slot2-38_1_8058_diatracer.827548.827548.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nM[147]TDELHQELTAEc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_PLD_Slot2-38_1_8058_diatracer.828873.828873.2 [INFO:] Please specify modification and rerun PTMProphet ... ​ [INFO:] processed 60000/82198 spectrum_queries [ERROR:] Cannot initialize for sequence: nGSAWLTSTVPEASVATAAANGNGSc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_PLD_Slot2-38_1_8058_diatracer.830892.830892.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nANGQIVPSYVHPHc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_PLD_Slot2-38_1_8058_diatracer.838969.838969.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nDLPPMKDLGQLSMMIILEPQLLSC[160]WSc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_PLD_Slot2-38_1_8058_diatracer.842299.842299.4 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nHPLQSADIREGAEc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_PLD_Slot2-38_1_8058_diatracer.843574.843574.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nIM[147]NSLQEMKVQLVNGM[147]VPLc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_PLD_Slot2-38_1_8058_diatracer.843758.843758.3 [INFO:] Please specify modification and rerun PTMProphet ... ​ [INFO:] processed 61000/82198 spectrum_queries [ERROR:] Cannot initialize for sequence: nEQC[160]GAPLAEc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_PLD_Slot2-38_1_8058_diatracer.847278.847278.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nLEATINELVc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_PLD_Slot2-38_1_8058_diatracer.848346.848346.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nLSDSSAPSSLGTGYFc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_PLD_Slot2-38_1_8058_diatracer.848482.848482.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nLSM[147]RSPLVTWLASAc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_PLD_Slot2-38_1_8058_diatracer.853307.853307.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nPSVGEVDM[147]Ec[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_PLD_Slot2-38_1_8058_diatracer.855624.855624.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nTAHDSNVLHc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_PLD_Slot2-38_1_8058_diatracer.856412.856412.2 [INFO:] Please specify modification and rerun PTMProphet ... ​ [INFO:] processed 62000/82198 spectrum_queries [ERROR:] Cannot initialize for sequence: nLC[160]TGPTPPC[160]c[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_PLD_Slot2-38_1_8058_diatracer.856900.856900.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nAAIQGNGDVGAc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_PLD_Slot2-38_1_8058_diatracer.857209.857209.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nYPGPPVGQSEc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_PLD_Slot2-38_1_8058_diatracer.857900.857900.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nYAPAPSNEAPc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_PLD_Slot2-38_1_8058_diatracer.859126.859126.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nAPC[160]WVC[160]C[160]Gc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_PLD_Slot2-38_1_8058_diatracer.860307.860307.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nHLSAAWPGTPLSSRc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_PLD_Slot2-38_1_8058_diatracer.863608.863608.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nLQVSQDRTTALQPSc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_PLD_Slot2-38_1_8058_diatracer.863866.863866.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nSSGDEDSWAPLQTYc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_PLD_Slot2-38_1_8058_diatracer.865876.865876.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nVTLVLRM[147]Lc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_PLD_Slot2-38_1_8058_diatracer.866963.866963.2 [INFO:] Please specify modification and rerun PTMProphet ... ​ [INFO:] processed 63000/82198 spectrum_queries [ERROR:] Cannot initialize for sequence: nAGSESASSIGSEGPM[147]TTc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_PLD_Slot2-38_1_8058_diatracer.874646.874646.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nKESQPGSGAVEMESVc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_PLD_Slot2-38_1_8058_diatracer.875353.875353.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nVFASSDTIKc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_PLD_Slot2-38_1_8058_diatracer.877010.877010.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nLQQAQKGTPMKPNTQATPPc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_PLD_Slot2-38_1_8058_diatracer.877334.877334.4 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nAVEVDPSLLLHMLEc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_PLD_Slot2-38_1_8058_diatracer.877907.877907.3 [INFO:] Please specify modification and rerun PTMProphet ... ​ [INFO:] processed 64000/82198 spectrum_queries [ERROR:] Cannot initialize for sequence: nLQQAQKGTPMKPNTQATPPc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_PLD_Slot2-38_1_8058_diatracer.880675.880675.4 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nELDSLSPIC[160]c[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_PLD_Slot2-38_1_8058_diatracer.881144.881144.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: n[43]NGTLDHPDQPDLDc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_PLD_Slot2-38_1_8058_diatracer.881750.881750.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nLQQAQKGTPMKPNTQATPPc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_PLD_Slot2-38_1_8058_diatracer.882344.882344.4 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nDM[147]LLGLASDPVLQVAc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_PLD_Slot2-38_1_8058_diatracer.882651.882651.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nEVLHTGLAM[147]LGLPPLSHIc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_PLD_Slot2-38_1_8058_diatracer.887546.887546.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nYDLLGWGTTAGPSGM[147]SGAGALc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_PLD_Slot2-38_1_8058_diatracer.889611.889611.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nSGEGFLC[160]VFSITEMESFc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_PLD_Slot2-38_1_8058_diatracer.890524.890524.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nSDTSLEM[147]TM[147]GNALFLDGSc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_PLD_Slot2-38_1_8058_diatracer.892472.892472.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nNSSISGPFGSRSSDTPM[147]ESc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_PLD_Slot2-38_1_8058_diatracer.896207.896207.2 [INFO:] Please specify modification and rerun PTMProphet ... ​ [INFO:] processed 65000/82198 spectrum_queries [ERROR:] Cannot initialize for sequence: nSSPLSQPAMTLSMDSMEQc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_PLD_Slot2-38_1_8058_diatracer.902856.902856.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nSFLEEAKHFM[147]EPNAEWc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_PLD_Slot2-38_1_8058_diatracer.904074.904074.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nYDLLGWGTTAGPSGM[147]SGAGALc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_PLD_Slot2-38_1_8058_diatracer.904426.904426.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nYLESSQSQNLPSGEAPC[160]Vc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_PLD_Slot2-38_1_8058_diatracer.911114.911114.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nALSLSGSSSSPQAQVM[147]VHMc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_PLD_Slot2-38_1_8058_diatracer.913763.913763.2 [INFO:] Please specify modification and rerun PTMProphet ... ​ [INFO:] processed 66000/82198 spectrum_queries [ERROR:] Cannot initialize for sequence: nEFGLDSVELAHYDVLLSYPNc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_PLD_Slot2-38_1_8058_diatracer.918140.918140.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nEGAVLYISPSGTELSc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_PLD_Slot2-38_1_8058_diatracer.921239.921239.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nGEAQGSAASAAVAGTAAAc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_PLD_Slot2-38_1_8058_diatracer.924487.924487.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nNIDRSGEAGHPGASGSc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_PLD_Slot2-38_1_8058_diatracer.924923.924923.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nGPGSFC[160]SPSSSC[160]RSc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_PLD_Slot2-38_1_8058_diatracer.925129.925129.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nEGIPPDQQRLIFAc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_PLD_Slot2-38_1_8058_diatracer.925501.925501.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nGEAQGSAASAAVAGTAAAc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_PLD_Slot2-38_1_8058_diatracer.926686.926686.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nAANNVWTLAGNGGGVGAGAGC[160]GGSKAc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_PLD_Slot2-38_1_8058_diatracer.926930.926930.3 [INFO:] Please specify modification and rerun PTMProphet ... ​ [INFO:] processed 67000/82198 spectrum_queries [ERROR:] Cannot initialize for sequence: nEGIPPDQQRLIFAc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_PLD_Slot2-38_1_8058_diatracer.929890.929890.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nGEAQGSAASAAVAGTAAAc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_PLD_Slot2-38_1_8058_diatracer.931079.931079.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nSNIWVEMLHASTIc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_PLD_Slot2-38_1_8058_diatracer.935045.935045.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nSFISSTVAQPSEMPPSPLVWEc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_PLD_Slot2-38_1_8058_diatracer.938203.938203.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nNVAPSGEVINLLMEc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_PLD_Slot2-38_1_8058_diatracer.938748.938748.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nQGGSTSLNC[160]THAAVSc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_PLD_Slot2-38_1_8058_diatracer.938945.938945.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nEGQPLLQAVHPLDQPEDPQDFRAEEHVc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_PLD_Slot2-38_1_8058_diatracer.939736.939736.4 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nSSQQGGSTTSLDEPIPMPEDGEDPTDSVPPc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_PLD_Slot2-38_1_8058_diatracer.940367.940367.4 [INFO:] Please specify modification and rerun PTMProphet ... ​ [INFO:] processed 68000/82198 spectrum_queries [ERROR:] Cannot initialize for sequence: nQGGSTSLNC[160]THAAVSc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_PLD_Slot2-38_1_8058_diatracer.943342.943342.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nGEAQGSAASAAVAGTAAAc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_PLD_Slot2-38_1_8058_diatracer.944258.944258.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nPLPYSFPTNASPM[147]Pc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_PLD_Slot2-38_1_8058_diatracer.947790.947790.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nDQPC[160]AAGAPPPEANGAc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_PLD_Slot2-38_1_8058_diatracer.949345.949345.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nEGIPPDQQRLIFAc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_PLD_Slot2-38_1_8058_diatracer.949655.949655.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nGEAQGSAASAAVAGTAAAc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_PLD_Slot2-38_1_8058_diatracer.953040.953040.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nGFGFVTM[147]TNYD[158]EAAMAIASLNGc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_PLD_Slot2-38_1_8058_diatracer.954908.954908.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nEGAVLYISPSGTELSc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_PLD_Slot2-38_1_8058_diatracer.956372.956372.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nQGGSTSLNC[160]THAAVSc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_PLD_Slot2-38_1_8058_diatracer.956510.956510.2 [INFO:] Please specify modification and rerun PTMProphet ... ​ [INFO:] processed 69000/82198 spectrum_queries [ERROR:] Cannot initialize for sequence: nALAGPDQDKAEDPGRc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_PLD_Slot2-38_1_8058_diatracer.959251.959251.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nEGAVLYISPSGTELSc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_PLD_Slot2-38_1_8058_diatracer.960878.960878.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nFHIYHMGQAGFPEc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_PLD_Slot2-38_1_8058_diatracer.963244.963244.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nRLPGASAQLGDc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_PLD_Slot2-38_1_8058_diatracer.967232.967232.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nFVLPHRFLGc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_PLD_Slot2-38_1_8058_diatracer.967431.967431.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nFVLPHRFLGc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_PLD_Slot2-38_1_8058_diatracer.969181.969181.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nQPPPAEAGAVNRTEAAc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_PLD_Slot2-38_1_8058_diatracer.970336.970336.3 [INFO:] Please specify modification and rerun PTMProphet ... ​ [INFO:] processed 70000/82198 spectrum_queries [ERROR:] Cannot initialize for sequence: nAFELLTMHLc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_PLD_Slot2-38_1_8058_diatracer.974123.974123.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nEANVPSVPALEAGHNVc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_PLD_Slot2-38_1_8058_diatracer.976169.976169.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nYYGGGYGSTQc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_PLD_Slot2-38_1_8058_diatracer.978436.978436.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nLVLSLAAVYEc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_PLD_Slot2-38_1_8058_diatracer.979364.979364.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nNTSALPC[160]KM[147]WGMPGc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_PLD_Slot2-38_1_8058_diatracer.980634.980634.3 [INFO:] Please specify modification and rerun PTMProphet ... ​ [INFO:] processed 71000/82198 spectrum_queries [ERROR:] Cannot initialize for sequence: nPDHADFWGFASELLc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_PLD_Slot2-38_1_8058_diatracer.983162.983162.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nSFGME[172]VAANIVPTNMc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_PLD_Slot2-38_1_8058_diatracer.985292.985292.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nAQGTPAYSYVPPHWc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_PLD_Slot2-38_1_8058_diatracer.985853.985853.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nYGNTVASLQAWLEDAc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_PLD_Slot2-38_1_8058_diatracer.986343.986343.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nNLGGIFLKGPHDAEVc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_PLD_Slot2-38_1_8058_diatracer.987608.987608.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nGGGVPQVC[160]PHYPQQDc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_PLD_Slot2-38_1_8058_diatracer.988041.988041.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nGD[158]IFNELM[147]LLANTGAc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_PLD_Slot2-38_1_8058_diatracer.989914.989914.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nEIQMDSPM[147]LLADLPDLQDPc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_PLD_Slot2-38_1_8058_diatracer.990725.990725.4 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nQLSSNQPQQGVTPYGHPSHFc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_PLD_Slot2-38_1_8058_diatracer.993590.993590.4 [INFO:] Please specify modification and rerun PTMProphet ... ​ [INFO:] processed 72000/82198 spectrum_queries [ERROR:] Cannot initialize for sequence: nLVLSLAAVYEc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_PLD_Slot2-38_1_8058_diatracer.995105.995105.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nLEPLSVTPAGAc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_PLD_Slot2-38_1_8058_diatracer.996057.996057.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: n[43]MPLC[160]PLAHAM[147]QPQSc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_PLD_Slot2-38_1_8058_diatracer.996782.996782.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nQQPVAISSAPAFGGNSVc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_PLD_Slot2-38_1_8058_diatracer.1000317.1000317.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nVDC[160]DQHYASc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_PLD_Slot2-38_1_8058_diatracer.1002445.1002445.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nNLGGIFLKGPHDAEVc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_PLD_Slot2-38_1_8058_diatracer.1003356.1003356.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nVWQVTIGTRc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_PLD_Slot2-38_1_8058_diatracer.1003415.1003415.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nVWQVTIGTRc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_PLD_Slot2-38_1_8058_diatracer.1005168.1005168.2 [INFO:] Please specify modification and rerun PTMProphet ... ​ [INFO:] processed 73000/82198 spectrum_queries [ERROR:] Cannot initialize for sequence: nAVIGSTYMLTQD[202]E[216]VLWc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_PLD_Slot2-38_1_8058_diatracer.1011068.1011068.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nQEGEPGPGPAPGSGGSSSSSDGDc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_PLD_Slot2-38_1_8058_diatracer.1015052.1015052.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nVTNIPQGM[147]VTDQFGMIGLLTFIRAAETDc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_PLD_Slot2-38_1_8058_diatracer.1018888.1018888.3 [INFO:] Please specify modification and rerun PTMProphet ... ​ [INFO:] processed 74000/82198 spectrum_queries [ERROR:] Cannot initialize for sequence: nPDAAAVAAAAAATEADKHSPEc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_PLD_Slot2-38_1_8058_diatracer.1027755.1027755.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nLGSIDNC[160]WPM[147]LSIFFTEc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_PLD_Slot2-38_1_8058_diatracer.1032096.1032096.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nVDFLEDVEGSGGSAPGPAPPAc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_PLD_Slot2-38_1_8058_diatracer.1033618.1033618.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nLFQVSDNFTEYLIYLTc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_PLD_Slot2-38_1_8058_diatracer.1034756.1034756.2 [INFO:] Please specify modification and rerun PTMProphet ... ​ [INFO:] processed 75000/82198 spectrum_queries [ERROR:] Cannot initialize for sequence: nE[172]GGASGE[172]GPGPSGSAASAAAASAAAASAAc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_PLD_Slot2-38_1_8058_diatracer.1042843.1042843.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nM[147]LIPFSNPRVLPGPc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_PLD_Slot2-38_1_8058_diatracer.1043890.1043890.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nTEPAALSSQEAEEVEEEGAPDYENLQELNc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_PLD_Slot2-38_1_8058_diatracer.1045112.1045112.4 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nM[147]LIPFSNPRVLPGPc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_PLD_Slot2-38_1_8058_diatracer.1048085.1048085.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nSPYHC[160]SFPM[147]QGDAc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_PLD_Slot2-38_1_8058_diatracer.1048176.1048176.2 [INFO:] Please specify modification and rerun PTMProphet ... ​ [INFO:] processed 76000/82198 spectrum_queries [ERROR:] Cannot initialize for sequence: nSPYHC[160]SFPM[147]QGDAc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_PLD_Slot2-38_1_8058_diatracer.1058647.1058647.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nSPYHC[160]SFPM[147]QGDAc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_PLD_Slot2-38_1_8058_diatracer.1058651.1058651.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nDGAEGQPALAETSPTAPEC[160]PPPAEc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_PLD_Slot2-38_1_8058_diatracer.1060070.1060070.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nM[147]LIPFSNPRVLPGPc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_PLD_Slot2-38_1_8058_diatracer.1060651.1060651.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nSPYHC[160]SFPM[147]QGDAc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_PLD_Slot2-38_1_8058_diatracer.1060742.1060742.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nPNSASATASGPGNAGSTAc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_PLD_Slot2-38_1_8058_diatracer.1061104.1061104.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nYVALGAAAAAIGSGTAGVATGPGGGGAAAAc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_PLD_Slot2-38_1_8058_diatracer.1064307.1064307.3 [INFO:] Please specify modification and rerun PTMProphet ... ​ [INFO:] processed 77000/82198 spectrum_queries [ERROR:] Cannot initialize for sequence: nM[147]LIPFSNPRVLPGPc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_PLD_Slot2-38_1_8058_diatracer.1064838.1064838.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nSSVFSGSDSLASAGIEC[160]DDGHVPAc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_PLD_Slot2-38_1_8058_diatracer.1066531.1066531.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nAKDFSAIEGMDPKDAc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_PLD_Slot2-38_1_8058_diatracer.1066634.1066634.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nSPYHC[160]SFPM[147]QGDAc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_PLD_Slot2-38_1_8058_diatracer.1067027.1067027.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nEFLNITTEENLWc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_PLD_Slot2-38_1_8058_diatracer.1073473.1073473.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nHSDPNAPDSSSDGLGSc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_PLD_Slot2-38_1_8058_diatracer.1074550.1074550.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nSPYHC[160]SFPM[147]QGDAc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_PLD_Slot2-38_1_8058_diatracer.1077502.1077502.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nAQTVSGSGTQETAGDGSc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_PLD_Slot2-38_1_8058_diatracer.1077687.1077687.2 [INFO:] Please specify modification and rerun PTMProphet ... ​ [INFO:] processed 78000/82198 spectrum_queries [ERROR:] Cannot initialize for sequence: nSPYHC[160]SFPM[147]QGDAc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_PLD_Slot2-38_1_8058_diatracer.1081689.1081689.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nVLLDEVSVLENLVAEc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_PLD_Slot2-38_1_8058_diatracer.1084155.1084155.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nDDDILLNLVGC[160]ENSVTEGQEc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_PLD_Slot2-38_1_8058_diatracer.1084328.1084328.4 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nDMSEGSWAPPc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_PLD_Slot2-38_1_8058_diatracer.1084358.1084358.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nELWERGLTGISNFQAc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_PLD_Slot2-38_1_8058_diatracer.1085168.1085168.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nNLC[160]LPGSISAGc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_PLD_Slot2-38_1_8058_diatracer.1087031.1087031.2 [INFO:] Please specify modification and rerun PTMProphet ... ​ [INFO:] processed 79000/82198 spectrum_queries [ERROR:] Cannot initialize for sequence: nYIVASDYSTSNHEGRc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_PLD_Slot2-38_1_8058_diatracer.1094461.1094461.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nEHVQDFAM[147]QLSSSMAc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_PLD_Slot2-38_1_8058_diatracer.1095507.1095507.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nELPLLGDTEWALEEQc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_PLD_Slot2-38_1_8058_diatracer.1095574.1095574.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nELWERGLTGISNFQAc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_PLD_Slot2-38_1_8058_diatracer.1097011.1097011.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nGHYAGM[147]GSSGVGc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_PLD_Slot2-38_1_8058_diatracer.1099035.1099035.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nIVTSDLEIVNc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_PLD_Slot2-38_1_8058_diatracer.1101433.1101433.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nVNWM[147]YFYEYEPIc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_PLD_Slot2-38_1_8058_diatracer.1102453.1102453.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nEIQRTLM[147]EIM[147]KQLc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_PLD_Slot2-38_1_8058_diatracer.1102573.1102573.3 [INFO:] Please specify modification and rerun PTMProphet ... ​ [INFO:] processed 80000/82198 spectrum_queries [ERROR:] Cannot initialize for sequence: nMATAVEPEDQc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_PLD_Slot2-38_1_8058_diatracer.1104697.1104697.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nPGGGGVGPGPGAAGPM[147]LGGVVc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_PLD_Slot2-38_1_8058_diatracer.1104784.1104784.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nRASALGGSGGGIVLYDYSAVAGAAPc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_PLD_Slot2-38_1_8058_diatracer.1105193.1105193.4 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nLSEGKGLEGPLc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_PLD_Slot2-38_1_8058_diatracer.1107041.1107041.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nNAPLDGLSVSSSSTGSLGSc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_PLD_Slot2-38_1_8058_diatracer.1107097.1107097.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nNTSVGDFNYNREEKc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_PLD_Slot2-38_1_8058_diatracer.1108415.1108415.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nEFGQLLLETGANEEPAc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_PLD_Slot2-38_1_8058_diatracer.1108739.1108739.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nVSRYSLWFKQIM[147]Nc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_PLD_Slot2-38_1_8058_diatracer.1109835.1109835.3 [INFO:] Please specify modification and rerun PTMProphet ... ​ [INFO:] processed 81000/82198 spectrum_queries [ERROR:] Cannot initialize for sequence: nM[147]APTSQFFLASGTAQAc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_PLD_Slot2-38_1_8058_diatracer.1115861.1115861.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nTNDILSM[147]PGPLNIEPAc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_PLD_Slot2-38_1_8058_diatracer.1118068.1118068.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nVGWVGLWTRAALATVAc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_PLD_Slot2-38_1_8058_diatracer.1118424.1118424.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nIVTSDLEIVNc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_PLD_Slot2-38_1_8058_diatracer.1121170.1121170.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nNESNSAGSPADM[147]ELDSGc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_PLD_Slot2-38_1_8058_diatracer.1121868.1121868.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nTNGYTQRHEc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_PLD_Slot2-38_1_8058_diatracer.1123045.1123045.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nLQFTYDGEQc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_PLD_Slot2-38_1_8058_diatracer.1123499.1123499.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nPPETEAQRGPC[160]LQWc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_PLD_Slot2-38_1_8058_diatracer.1124288.1124288.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nRASALGGSGGGIVLYDYSAVAGAAPc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_PLD_Slot2-38_1_8058_diatracer.1124950.1124950.4 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nAAEAGETQDPHAQLSGSc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_PLD_Slot2-38_1_8058_diatracer.1126286.1126286.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nAEGLVTFAPWC[160]ATTASc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_PLD_Slot2-38_1_8058_diatracer.1126396.1126396.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nRASALGGSGGGIVLYDYSAVAGAAPc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_PLD_Slot2-38_1_8058_diatracer.1126929.1126929.4 [INFO:] Please specify modification and rerun PTMProphet ... ​ [INFO:] processed 82000/82198 spectrum_queries [INFO:] done ... [INFO:] Computing EM Models ... [INFO:] Iterating PTM Model: ....5...done [INFO:] done ... [INFO:] done ... [INFO:] Creating 1 threads [INFO:] Wait for threads to finish ... [INFO:] Reading file interact-20240927_SW-KF_S1_PLD_Slot2-38_1_8058_diatracer.pep.xml ... [ERROR:] Cannot initialize for sequence: nGESPVKSDRNGSSVANEAEQc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_PLD_Slot2-38_1_8058_diatracer.02464.02464.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nLLALTPLLLLLLLLPWLLc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_PLD_Slot2-38_1_8058_diatracer.03918.03918.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nLGDTPSPPYPATPAGDIM[147]ELc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_PLD_Slot2-38_1_8058_diatracer.11363.11363.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nAIASATEVSLAATATHTATTQGc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_PLD_Slot2-38_1_8058_diatracer.13706.13706.2 [INFO:] Please specify modification and rerun PTMProphet ... ​ [INFO:] written 1000/82198 spectrum_queries [ERROR:] Cannot initialize for sequence: nVYEKHSAQc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_PLD_Slot2-38_1_8058_diatracer.15259.15259.1 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nLLALTPLLLLLLLLPWLLc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_PLD_Slot2-38_1_8058_diatracer.17872.17872.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nPFSPSAYSLPASLNSSIVM[147]QHGTSLDSTDTYc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_PLD_Slot2-38_1_8058_diatracer.27419.27419.4 [INFO:] Please specify modification and rerun PTMProphet ... ​ [INFO:] written 2000/82198 spectrum_queries [ERROR:] Cannot initialize for sequence: nAEALLAMAEAEKGSNDc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_PLD_Slot2-38_1_8058_diatracer.31328.31328.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nAVMIGAC[160]FLIDFM[147]Fc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_PLD_Slot2-38_1_8058_diatracer.32362.32362.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nELAGNTSSPPLSPGRPc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_PLD_Slot2-38_1_8058_diatracer.35666.35666.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nALGATFC[160]FFAVEAVVc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_PLD_Slot2-38_1_8058_diatracer.36637.36637.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nGADLGWGETAQAQFPGc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_PLD_Slot2-38_1_8058_diatracer.43085.43085.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nTGKVRAVIGSTYM[147]LTQDEVLWc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_PLD_Slot2-38_1_8058_diatracer.43239.43239.3 [INFO:] Please specify modification and rerun PTMProphet ... ​ [INFO:] written 3000/82198 spectrum_queries [ERROR:] Cannot initialize for sequence: nLPSVGFSETGAPGPARM[147]EGAQAAAVc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_PLD_Slot2-38_1_8058_diatracer.49506.49506.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nAPTAALPQGVVM[147]AASPGSLHSPQQLc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_PLD_Slot2-38_1_8058_diatracer.51096.51096.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nTYIMM[147]VNATNQM[147]GSc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_PLD_Slot2-38_1_8058_diatracer.52628.52628.2 [INFO:] Please specify modification and rerun PTMProphet ... ​ [INFO:] written 4000/82198 spectrum_queries [ERROR:] Cannot initialize for sequence: nPC[160]HKQGALPLGM[147]FSc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_PLD_Slot2-38_1_8058_diatracer.64045.64045.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nGLAVGTGESNENLSGSSDHQAGVC[160]GGc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_PLD_Slot2-38_1_8058_diatracer.65103.65103.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nVVQC[160]SDLGIDSC[160]QQc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_PLD_Slot2-38_1_8058_diatracer.66409.66409.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nM[147]SLTLNQVIQDAQKc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_PLD_Slot2-38_1_8058_diatracer.70125.70125.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nILEVSNC[160]LIVDPDSc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_PLD_Slot2-38_1_8058_diatracer.71094.71094.2 [INFO:] Please specify modification and rerun PTMProphet ... ​ [INFO:] written 5000/82198 spectrum_queries [ERROR:] Cannot initialize for sequence: nEEVVIAGM[147]SGKLPESENc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_PLD_Slot2-38_1_8058_diatracer.73884.73884.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nSTIGVMVTASHNPEAQQc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_PLD_Slot2-38_1_8058_diatracer.74053.74053.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nSLPGSPDGNGSSSC[160]PTGSSGc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_PLD_Slot2-38_1_8058_diatracer.77981.77981.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nSGFGSGVTSFGC[160]c[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_PLD_Slot2-38_1_8058_diatracer.78766.78766.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nPAGPGTAGAALRDc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_PLD_Slot2-38_1_8058_diatracer.80313.80313.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nHMAQTANQDPASIMFNc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_PLD_Slot2-38_1_8058_diatracer.80350.80350.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nNM[147]DHVYPVSSHIAFSc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_PLD_Slot2-38_1_8058_diatracer.80953.80953.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nVDFSLAGALNAGc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_PLD_Slot2-38_1_8058_diatracer.81391.81391.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nGLLTTTFSAIPAc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_PLD_Slot2-38_1_8058_diatracer.82196.82196.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nNLLESIPTHSc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_PLD_Slot2-38_1_8058_diatracer.82617.82617.2 [INFO:] Please specify modification and rerun PTMProphet ... ​ [INFO:] written 6000/82198 spectrum_queries [ERROR:] Cannot initialize for sequence: nVVAAPPLPGAARc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_PLD_Slot2-38_1_8058_diatracer.85017.85017.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nSQLQLYLTC[160]HGPTAAPEGTVPSc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_PLD_Slot2-38_1_8058_diatracer.86978.86978.4 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nKIGSTFLSGTEM[147]VPC[160]Ec[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_PLD_Slot2-38_1_8058_diatracer.87302.87302.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nELEQKNAMITVLENTc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_PLD_Slot2-38_1_8058_diatracer.87306.87306.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nGEAGVAAAC[160]GAEGGc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_PLD_Slot2-38_1_8058_diatracer.87558.87558.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: n[43]MAEQLLEM[147]Sc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_PLD_Slot2-38_1_8058_diatracer.88690.88690.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nGLLTTTFSAIPAc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_PLD_Slot2-38_1_8058_diatracer.90320.90320.2 [INFO:] Please specify modification and rerun PTMProphet ... ​ [INFO:] written 7000/82198 spectrum_queries [ERROR:] Cannot initialize for sequence: nMQLDPC[160]EDTSLQPTSc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_PLD_Slot2-38_1_8058_diatracer.95013.95013.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nIIEM[147]AAAGHGDPc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_PLD_Slot2-38_1_8058_diatracer.98667.98667.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nLC[160]INIITSVHc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_PLD_Slot2-38_1_8058_diatracer.101469.101469.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nTESSSNNM[147]TAPLAPGPPGc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_PLD_Slot2-38_1_8058_diatracer.101819.101819.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nGAWKNSVEEWTTEDWTEDHc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_PLD_Slot2-38_1_8058_diatracer.105192.105192.4 [INFO:] Please specify modification and rerun PTMProphet ... ​ [INFO:] written 8000/82198 spectrum_queries [ERROR:] Cannot initialize for sequence: nTTELGGAAPSPEc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_PLD_Slot2-38_1_8058_diatracer.105992.105992.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nETWGSVIASSPSAQASAHLLSSKAc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_PLD_Slot2-38_1_8058_diatracer.108548.108548.4 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nAISEELDHALNDM[147]TSIc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_PLD_Slot2-38_1_8058_diatracer.108835.108835.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nEGNVLMDTELc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_PLD_Slot2-38_1_8058_diatracer.109405.109405.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nEVVGYAGRGLEc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_PLD_Slot2-38_1_8058_diatracer.112639.112639.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nEPPVAAPSGTAALIPETAAc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_PLD_Slot2-38_1_8058_diatracer.113416.113416.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nPGSLFAALM[147]ATATSSLRc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_PLD_Slot2-38_1_8058_diatracer.115082.115082.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nPQDWLWAWGc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_PLD_Slot2-38_1_8058_diatracer.115395.115395.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nIDAAEGPSDIPDc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_PLD_Slot2-38_1_8058_diatracer.116997.116997.2 [INFO:] Please specify modification and rerun PTMProphet ... ​ [INFO:] written 9000/82198 spectrum_queries [ERROR:] Cannot initialize for sequence: nPQPASPDM[147]RGPPPASGPQc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_PLD_Slot2-38_1_8058_diatracer.118285.118285.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nAEAQLGTLAAAVAc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_PLD_Slot2-38_1_8058_diatracer.118361.118361.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nYNNGSTELHSc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_PLD_Slot2-38_1_8058_diatracer.119132.119132.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nYNNGSTELHSc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_PLD_Slot2-38_1_8058_diatracer.119292.119292.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nEM[147]ELPM[147]VTVc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_PLD_Slot2-38_1_8058_diatracer.119371.119371.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nEM[147]ELPM[147]VTVc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_PLD_Slot2-38_1_8058_diatracer.119530.119530.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nSAFHSSSc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_PLD_Slot2-38_1_8058_diatracer.121630.121630.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nYNNGSTELHSc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_PLD_Slot2-38_1_8058_diatracer.122454.122454.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nVIQGDGVDINTLQEVC[160]VLYc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_PLD_Slot2-38_1_8058_diatracer.126794.126794.2 [INFO:] Please specify modification and rerun PTMProphet ... ​ [INFO:] written 10000/82198 spectrum_queries [ERROR:] Cannot initialize for sequence: nVIQGDGVDINTLQEVC[160]VLYc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_PLD_Slot2-38_1_8058_diatracer.133585.133585.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nM[147]LIESASTNEVM[147]AQMEMISc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_PLD_Slot2-38_1_8058_diatracer.133764.133764.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nKDLC[160]AIWEASSSSHAAHAAVc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_PLD_Slot2-38_1_8058_diatracer.138231.138231.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nQSFHM[147]AM[147]GNPSEFFVDVMc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_PLD_Slot2-38_1_8058_diatracer.142206.142206.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nRELQQVTAGEAASIHc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_PLD_Slot2-38_1_8058_diatracer.144234.144234.2 [INFO:] Please specify modification and rerun PTMProphet ... ​ [INFO:] written 11000/82198 spectrum_queries [ERROR:] Cannot initialize for sequence: nANKVNWQSYLQGQMISAEDLC[160]c[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_PLD_Slot2-38_1_8058_diatracer.150023.150023.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nGLGTDEDSLIE[172]IIC[160]Sc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_PLD_Slot2-38_1_8058_diatracer.152534.152534.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nEEGGMKGSPSSAKEEFc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_PLD_Slot2-38_1_8058_diatracer.154576.154576.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nGFSGEGIMELVHYKEc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_PLD_Slot2-38_1_8058_diatracer.159534.159534.2 [INFO:] Please specify modification and rerun PTMProphet ... ​ [INFO:] written 12000/82198 spectrum_queries [ERROR:] Cannot initialize for sequence: nEAAQC[160]TEFAQEM[147]DEc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_PLD_Slot2-38_1_8058_diatracer.166383.166383.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nFTVSGQFSPC[160]INAHGARMGGFERc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_PLD_Slot2-38_1_8058_diatracer.172010.172010.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nRPEFC[160]NTGPAAYPRc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_PLD_Slot2-38_1_8058_diatracer.172172.172172.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nEAWSLGGGGGLATDSSSPc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_PLD_Slot2-38_1_8058_diatracer.172806.172806.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nSYFDEAAC[160]NLREWc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_PLD_Slot2-38_1_8058_diatracer.175395.175395.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nPASVSSPEPPKSVPVC[160]c[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_PLD_Slot2-38_1_8058_diatracer.176408.176408.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nTLEFPFVNGSAEIM[147]Lc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_PLD_Slot2-38_1_8058_diatracer.176486.176486.2 [INFO:] Please specify modification and rerun PTMProphet ... ​ [INFO:] written 13000/82198 spectrum_queries [ERROR:] Cannot initialize for sequence: nEIARTVQILGADFILSLGDNFYc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_PLD_Slot2-38_1_8058_diatracer.177188.177188.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nANKVNWQSYLQGQMISAEDLC[160]c[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_PLD_Slot2-38_1_8058_diatracer.180863.180863.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nGGSAIGVLETVDQASTNc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_PLD_Slot2-38_1_8058_diatracer.183259.183259.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nLHQM[147]IELSSKAAVNGc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_PLD_Slot2-38_1_8058_diatracer.184981.184981.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nVLTQM[147]GSPLNPISSVSc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_PLD_Slot2-38_1_8058_diatracer.186316.186316.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nQSVIQFSPPFPGAQAPLc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_PLD_Slot2-38_1_8058_diatracer.189090.189090.3 [INFO:] Please specify modification and rerun PTMProphet ... ​ [INFO:] written 14000/82198 spectrum_queries [ERROR:] Cannot initialize for sequence: nTHGTFNGQASGTAc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_PLD_Slot2-38_1_8058_diatracer.190841.190841.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nETDTM[147]RGYESc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_PLD_Slot2-38_1_8058_diatracer.190996.190996.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nEEDDSIHFDNc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_PLD_Slot2-38_1_8058_diatracer.196049.196049.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: n[43]MPILC[160]GSLSWGASSAMEc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_PLD_Slot2-38_1_8058_diatracer.198014.198014.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nETTTTKGADIHAc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_PLD_Slot2-38_1_8058_diatracer.199140.199140.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nM[147]AQTLANFYQc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_PLD_Slot2-38_1_8058_diatracer.199894.199894.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nQSVIQFSPPFPGAQAPLc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_PLD_Slot2-38_1_8058_diatracer.202007.202007.3 [INFO:] Please specify modification and rerun PTMProphet ... ​ [INFO:] written 15000/82198 spectrum_queries [ERROR:] Cannot initialize for sequence: nPM[147]ADAPPSAPEGSGDLLYc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_PLD_Slot2-38_1_8058_diatracer.202745.202745.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nTFYVAVDEFVVAEQPGPMPLAMAc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_PLD_Slot2-38_1_8058_diatracer.204730.204730.4 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nDKLAQQQAAAAAAAAAAASQc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_PLD_Slot2-38_1_8058_diatracer.206234.206234.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nYAAYHDLPMSc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_PLD_Slot2-38_1_8058_diatracer.208685.208685.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nTPATQAIHIFSc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_PLD_Slot2-38_1_8058_diatracer.209432.209432.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nESQVQTQVQGEAGGEAGVPc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_PLD_Slot2-38_1_8058_diatracer.209773.209773.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nLTPAEEENNSFQRLSPc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_PLD_Slot2-38_1_8058_diatracer.211794.211794.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nQSVIQFSPPFPGAQAPLc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_PLD_Slot2-38_1_8058_diatracer.212854.212854.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nYAAYHDLPMSc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_PLD_Slot2-38_1_8058_diatracer.213033.213033.2 [INFO:] Please specify modification and rerun PTMProphet ... ​ [INFO:] written 16000/82198 spectrum_queries [ERROR:] Cannot initialize for sequence: nIQSSGGPLQVM[147]GASLPEIc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_PLD_Slot2-38_1_8058_diatracer.213611.213611.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nHYSGVISHMLESDMIKc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_PLD_Slot2-38_1_8058_diatracer.216927.216927.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nLFESGLAGLVTAPLAQLAQGSWSEAc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_PLD_Slot2-38_1_8058_diatracer.218517.218517.4 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nRTGTESSASSLAAAGAAGSDGLGSLTEAc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_PLD_Slot2-38_1_8058_diatracer.218979.218979.4 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nC[160]C[160]PAIGTLYNc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_PLD_Slot2-38_1_8058_diatracer.223931.223931.2 [INFO:] Please specify modification and rerun PTMProphet ... ​ [INFO:] written 17000/82198 spectrum_queries [ERROR:] Cannot initialize for sequence: nLHILDLVAGFC[160]QTFFLc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_PLD_Slot2-38_1_8058_diatracer.225614.225614.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nM[147]SQSGAVSC[160]C[160]PGATNGSLGRSDGVAc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_PLD_Slot2-38_1_8058_diatracer.226511.226511.4 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nIVQAEGEAEAAKc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_PLD_Slot2-38_1_8058_diatracer.228549.228549.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nVVSNFILQALQGEPLTVc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_PLD_Slot2-38_1_8058_diatracer.231345.231345.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nSAM[147]AGEQTGRHc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_PLD_Slot2-38_1_8058_diatracer.232307.232307.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nVYENVGLM[147]QQQKSFRc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_PLD_Slot2-38_1_8058_diatracer.233908.233908.3 [INFO:] Please specify modification and rerun PTMProphet ... ​ [INFO:] written 18000/82198 spectrum_queries [ERROR:] Cannot initialize for sequence: nAQLYATNAILNDLAGMDVc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_PLD_Slot2-38_1_8058_diatracer.236319.236319.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nPAGPGPGPPc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_PLD_Slot2-38_1_8058_diatracer.242140.242140.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nLAMLTGVLLANGc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_PLD_Slot2-38_1_8058_diatracer.242321.242321.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nSAIHDTEMVVPLELGNGHM[147]Pc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_PLD_Slot2-38_1_8058_diatracer.249268.249268.2 [INFO:] Please specify modification and rerun PTMProphet ... ​ [INFO:] written 19000/82198 spectrum_queries [ERROR:] Cannot initialize for sequence: nAGEGTYALDSE[172]SC[160]MEc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_PLD_Slot2-38_1_8058_diatracer.265159.265159.2 [INFO:] Please specify modification and rerun PTMProphet ... ​ [INFO:] written 20000/82198 spectrum_queries [ERROR:] Cannot initialize for sequence: nKEPKVQAGSE[216]IE[216]AGTc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_PLD_Slot2-38_1_8058_diatracer.278998.278998.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nSFSAISESSADNTLFSc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_PLD_Slot2-38_1_8058_diatracer.282117.282117.2 [INFO:] Please specify modification and rerun PTMProphet ... ​ [INFO:] written 21000/82198 spectrum_queries [ERROR:] Cannot initialize for sequence: nDLVDFFSAEPGM[147]PAFAc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_PLD_Slot2-38_1_8058_diatracer.287045.287045.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nM[147]LGPQSSLQTHSIENc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_PLD_Slot2-38_1_8058_diatracer.289748.289748.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nVGELHHLSPEKFTLPc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_PLD_Slot2-38_1_8058_diatracer.291369.291369.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nQLIDEGIAPEEGGVDAPc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_PLD_Slot2-38_1_8058_diatracer.295699.295699.2 [INFO:] Please specify modification and rerun PTMProphet ... ​ [INFO:] written 22000/82198 spectrum_queries [ERROR:] Cannot initialize for sequence: nC[160]VSAPSALSC[160]TDVIEPc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_PLD_Slot2-38_1_8058_diatracer.300607.300607.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nPLAVLWLC[160]QLc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_PLD_Slot2-38_1_8058_diatracer.304828.304828.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nELEEGSLEQATIMDQVAc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_PLD_Slot2-38_1_8058_diatracer.307080.307080.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nSGARHSVGGGGAAAPAGQPGGGPc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_PLD_Slot2-38_1_8058_diatracer.309504.309504.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nSLMEDAEDLVFc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_PLD_Slot2-38_1_8058_diatracer.309874.309874.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nPWPLHSSPGAAQPPEGGGLc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_PLD_Slot2-38_1_8058_diatracer.311375.311375.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nWIEAMEDASVLc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_PLD_Slot2-38_1_8058_diatracer.311775.311775.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nFTVQM[147]PTSQSPc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_PLD_Slot2-38_1_8058_diatracer.312783.312783.2 [INFO:] Please specify modification and rerun PTMProphet ... ​ [INFO:] written 23000/82198 spectrum_queries [ERROR:] Cannot initialize for sequence: nSGADSDESADGAAAAAE[216]LE[216]PGEVTAAc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_PLD_Slot2-38_1_8058_diatracer.318614.318614.4 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nRDPEMAM[147]DLEc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_PLD_Slot2-38_1_8058_diatracer.320680.320680.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nQQVC[160]LGYSNYc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_PLD_Slot2-38_1_8058_diatracer.320994.320994.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nHLTNSAC[160]DEHPc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_PLD_Slot2-38_1_8058_diatracer.321325.321325.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nLSPSGGAGAAAGDAMc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_PLD_Slot2-38_1_8058_diatracer.323530.323530.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nTLNINGQIPTGEGVSTLSTc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_PLD_Slot2-38_1_8058_diatracer.323814.323814.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nIC[160]LFASLSHSPRDIHC[160]c[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_PLD_Slot2-38_1_8058_diatracer.324111.324111.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nPGAAEC[160]AAGLGERc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_PLD_Slot2-38_1_8058_diatracer.324929.324929.2 [INFO:] Please specify modification and rerun PTMProphet ... ​ [INFO:] written 24000/82198 spectrum_queries [ERROR:] Cannot initialize for sequence: nGVAPDSKTTGSSYPFQLDc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_PLD_Slot2-38_1_8058_diatracer.327129.327129.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nEIQGNSTFPNNFGFNIQc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_PLD_Slot2-38_1_8058_diatracer.329707.329707.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nGLAAMEEDTLEELGGAEAEc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_PLD_Slot2-38_1_8058_diatracer.332155.332155.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nGC[160]QRPVM[147]TWSc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_PLD_Slot2-38_1_8058_diatracer.332387.332387.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nGAHTHAHTQTHTc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_PLD_Slot2-38_1_8058_diatracer.333068.333068.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nNMTAITAADAM[147]Qc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_PLD_Slot2-38_1_8058_diatracer.333097.333097.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nAASAATIFRAYNc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_PLD_Slot2-38_1_8058_diatracer.333227.333227.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nIC[160]DLNRITEQc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_PLD_Slot2-38_1_8058_diatracer.333741.333741.2 [INFO:] Please specify modification and rerun PTMProphet ... ​ [INFO:] written 25000/82198 spectrum_queries [ERROR:] Cannot initialize for sequence: nQTQGEEM[147]NEEc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_PLD_Slot2-38_1_8058_diatracer.337697.337697.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nRDNDETNQQGAc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_PLD_Slot2-38_1_8058_diatracer.341537.341537.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nQVLSNTLDNIAYIMPGLc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_PLD_Slot2-38_1_8058_diatracer.342329.342329.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nEDGM[147]DLGSDAGSSSSSSRASc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_PLD_Slot2-38_1_8058_diatracer.342583.342583.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nSGALSEAAVSAPEAc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_PLD_Slot2-38_1_8058_diatracer.342702.342702.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nQATD[158]LLGWEE[172]QSFYVAVDEFTc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_PLD_Slot2-38_1_8058_diatracer.342849.342849.4 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nLEDVLWLQEVSNLSEWLSPSPGPc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_PLD_Slot2-38_1_8058_diatracer.343373.343373.4 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nGTTPPWPLSQYc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_PLD_Slot2-38_1_8058_diatracer.343832.343832.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nTGGGGGPSC[160]PWPEc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_PLD_Slot2-38_1_8058_diatracer.344660.344660.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nDSFSGPSTSGSNHc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_PLD_Slot2-38_1_8058_diatracer.347541.347541.2 [INFO:] Please specify modification and rerun PTMProphet ... ​ [INFO:] written 26000/82198 spectrum_queries [ERROR:] Cannot initialize for sequence: nFSC[160]IVVGYKEEETPTWc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_PLD_Slot2-38_1_8058_diatracer.348148.348148.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nLEAEQM[147]QQLVGHGQPSC[160]LESSFGc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_PLD_Slot2-38_1_8058_diatracer.349709.349709.4 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nGDGTGGVTGYFTVTLYC[160]Ec[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_PLD_Slot2-38_1_8058_diatracer.351086.351086.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nVGGPPPKFPNNLDPDAFPNSDFDSc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_PLD_Slot2-38_1_8058_diatracer.353354.353354.4 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nGPEALQEFQQTc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_PLD_Slot2-38_1_8058_diatracer.358893.358893.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nMISEVTGGSHDVc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_PLD_Slot2-38_1_8058_diatracer.359339.359339.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nLLDSSDPPISASc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_PLD_Slot2-38_1_8058_diatracer.359523.359523.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nLESEALGGGTAPPc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_PLD_Slot2-38_1_8058_diatracer.360123.360123.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nLAVIASHIQERc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_PLD_Slot2-38_1_8058_diatracer.361832.361832.3 [INFO:] Please specify modification and rerun PTMProphet ... ​ [INFO:] written 27000/82198 spectrum_queries [ERROR:] Cannot initialize for sequence: nM[147]DGM[147]DASGLGRGc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_PLD_Slot2-38_1_8058_diatracer.362728.362728.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nTHGTFNGQASGTAc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_PLD_Slot2-38_1_8058_diatracer.364754.364754.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nAAASALENGWPEAc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_PLD_Slot2-38_1_8058_diatracer.365073.365073.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nLESEALGGGTAPPc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_PLD_Slot2-38_1_8058_diatracer.365387.365387.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nC[160]GPRFKSLLNGc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_PLD_Slot2-38_1_8058_diatracer.365823.365823.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nSSQLPARPSSALGDLLSc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_PLD_Slot2-38_1_8058_diatracer.367187.367187.4 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nAAASALENGWPEAc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_PLD_Slot2-38_1_8058_diatracer.367713.367713.3 [INFO:] Please specify modification and rerun PTMProphet ... ​ [INFO:] written 28000/82198 spectrum_queries [ERROR:] Cannot initialize for sequence: nIM[147]TDIISIGSDNEMHENDESVTRc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_PLD_Slot2-38_1_8058_diatracer.387450.387450.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nVNDSNELGGLTTSGSAELc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_PLD_Slot2-38_1_8058_diatracer.394665.394665.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nEISEVAFVHEGVAPLEc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_PLD_Slot2-38_1_8058_diatracer.396835.396835.2 [INFO:] Please specify modification and rerun PTMProphet ... ​ [INFO:] written 29000/82198 spectrum_queries [ERROR:] Cannot initialize for sequence: nNWPNNLM[147]LFDTNNMc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_PLD_Slot2-38_1_8058_diatracer.397243.397243.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nTC[160]LSTNGPASTLNDVAQc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_PLD_Slot2-38_1_8058_diatracer.414026.414026.2 [INFO:] Please specify modification and rerun PTMProphet ... ​ [INFO:] written 30000/82198 spectrum_queries [ERROR:] Cannot initialize for sequence: nDGVSASLSSPSQTM[147]QIDc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_PLD_Slot2-38_1_8058_diatracer.415479.415479.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nGDQADLDVNC[160]LQNNLTc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_PLD_Slot2-38_1_8058_diatracer.415728.415728.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nYFLNEGEEGPDc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_PLD_Slot2-38_1_8058_diatracer.427377.427377.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nTLAWPSSLDM[147]VAc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_PLD_Slot2-38_1_8058_diatracer.429138.429138.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nTQEWGLM[147]ILDEVHTIPVc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_PLD_Slot2-38_1_8058_diatracer.429218.429218.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nFSIAFSIVGMFASHAVGSLSVFFC[160]Ac[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_PLD_Slot2-38_1_8058_diatracer.429527.429527.4 [INFO:] Please specify modification and rerun PTMProphet ... ​ [INFO:] written 31000/82198 spectrum_queries [ERROR:] Cannot initialize for sequence: nDDVPVFDM[147]LLMYDAMPDc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_PLD_Slot2-38_1_8058_diatracer.436741.436741.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nLLDFAAFLTTLSc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_PLD_Slot2-38_1_8058_diatracer.440923.440923.2 [INFO:] Please specify modification and rerun PTMProphet ... ​ [INFO:] written 32000/82198 spectrum_queries [ERROR:] Cannot initialize for sequence: nDVLGMAQDEM[147]AQc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_PLD_Slot2-38_1_8058_diatracer.441617.441617.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nVEIPQEVTLNQc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_PLD_Slot2-38_1_8058_diatracer.443036.443036.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nGIAVAC[160]DAQGPGRc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_PLD_Slot2-38_1_8058_diatracer.443522.443522.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nLVLVLLWLEGRc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_PLD_Slot2-38_1_8058_diatracer.445467.445467.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nEAEPPMSFC[160]GRc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_PLD_Slot2-38_1_8058_diatracer.445810.445810.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nEEDGFAAAAAAATALSVGC[160]SKc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_PLD_Slot2-38_1_8058_diatracer.446866.446866.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nFSLTMYGDENEc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_PLD_Slot2-38_1_8058_diatracer.449053.449053.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nDDVPVFDM[147]LLMYDAMPDc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_PLD_Slot2-38_1_8058_diatracer.450111.450111.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nFSLTMYGDENEc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_PLD_Slot2-38_1_8058_diatracer.451281.451281.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nAAIEETLLLESSc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_PLD_Slot2-38_1_8058_diatracer.452439.452439.2 [INFO:] Please specify modification and rerun PTMProphet ... ​ [INFO:] written 33000/82198 spectrum_queries [ERROR:] Cannot initialize for sequence: nKIC[160]SC[160]FGVTWc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_PLD_Slot2-38_1_8058_diatracer.453880.453880.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nVSLEEIYSGC[160]Tc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_PLD_Slot2-38_1_8058_diatracer.453936.453936.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nLAYDAMEVQDEc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_PLD_Slot2-38_1_8058_diatracer.454840.454840.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nVSLEEIYSGC[160]Tc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_PLD_Slot2-38_1_8058_diatracer.458402.458402.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nGSVQSMDQGEDADc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_PLD_Slot2-38_1_8058_diatracer.459877.459877.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nC[160]IAPGAAEVSLM[147]Nc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_PLD_Slot2-38_1_8058_diatracer.460342.460342.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nEAGIENVNSTKFc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_PLD_Slot2-38_1_8058_diatracer.460965.460965.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nPDEPTAPSGGGKTDSGAGGAGAEc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_PLD_Slot2-38_1_8058_diatracer.460970.460970.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nLGSSNPPRSASQVPGTTGMHHYAQLKc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_PLD_Slot2-38_1_8058_diatracer.462363.462363.4 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nSNVSPFSESHRQSALDPAc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_PLD_Slot2-38_1_8058_diatracer.465024.465024.3 [INFO:] Please specify modification and rerun PTMProphet ... ​ [INFO:] written 34000/82198 spectrum_queries [ERROR:] Cannot initialize for sequence: nYELAHPPEEWc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_PLD_Slot2-38_1_8058_diatracer.465412.465412.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nEKRPC[160]TSM[147]HFQLPIQAc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_PLD_Slot2-38_1_8058_diatracer.465671.465671.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nQTMSHDSQAVASSLQSC[160]Fc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_PLD_Slot2-38_1_8058_diatracer.468761.468761.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nTQEWGLM[147]ILDEVHTIPVc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_PLD_Slot2-38_1_8058_diatracer.469315.469315.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nGIINRGLEDGESWEYQIc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_PLD_Slot2-38_1_8058_diatracer.470791.470791.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nLEDQAATPTGLGSc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_PLD_Slot2-38_1_8058_diatracer.471885.471885.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nLEDQAATPTGLGSc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_PLD_Slot2-38_1_8058_diatracer.474117.474117.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nTWGGVVTAAM[147]VIALAVYM[147]Gc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_PLD_Slot2-38_1_8058_diatracer.474266.474266.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nVEQLINAM[147]SIESc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_PLD_Slot2-38_1_8058_diatracer.475885.475885.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nQM[147]LDDIPEDNTc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_PLD_Slot2-38_1_8058_diatracer.476084.476084.2 [INFO:] Please specify modification and rerun PTMProphet ... ​ [INFO:] written 35000/82198 spectrum_queries [ERROR:] Cannot initialize for sequence: nGQNVGPGPPAQTEAc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_PLD_Slot2-38_1_8058_diatracer.477252.477252.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nFSPPLPASGc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_PLD_Slot2-38_1_8058_diatracer.478515.478515.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nSISLHKSGc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_PLD_Slot2-38_1_8058_diatracer.478719.478719.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nNGLFSTLVM[147]TNKc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_PLD_Slot2-38_1_8058_diatracer.478882.478882.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nTGEM[147]AGVALc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_PLD_Slot2-38_1_8058_diatracer.479551.479551.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nTLFAPVNSPGAAGPGVPLDc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_PLD_Slot2-38_1_8058_diatracer.480033.480033.4 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nNPTAFYLC[160]ASSIc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_PLD_Slot2-38_1_8058_diatracer.481691.481691.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nC[160]SGTISAHc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_PLD_Slot2-38_1_8058_diatracer.483498.483498.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nGAIEDMGFDATLSc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_PLD_Slot2-38_1_8058_diatracer.486275.486275.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nGVGAVAAAAAAAc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_PLD_Slot2-38_1_8058_diatracer.486844.486844.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nVQHISVANVVPEc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_PLD_Slot2-38_1_8058_diatracer.487311.487311.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nAMAPSPSLVQVYTc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_PLD_Slot2-38_1_8058_diatracer.489581.489581.3 [INFO:] Please specify modification and rerun PTMProphet ... ​ [INFO:] written 36000/82198 spectrum_queries [ERROR:] Cannot initialize for sequence: nFSPPLPASGc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_PLD_Slot2-38_1_8058_diatracer.494828.494828.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nQLLAPGNSAc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_PLD_Slot2-38_1_8058_diatracer.496821.496821.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nNISMLNTIFTYc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_PLD_Slot2-38_1_8058_diatracer.497237.497237.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nEEAVGTATAc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_PLD_Slot2-38_1_8058_diatracer.499147.499147.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: n[43]EM[147]GGSQEEIGLC[160]c[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_PLD_Slot2-38_1_8058_diatracer.499315.499315.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nLQEGAPAPGc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_PLD_Slot2-38_1_8058_diatracer.499930.499930.2 [INFO:] Please specify modification and rerun PTMProphet ... ​ [INFO:] written 37000/82198 spectrum_queries [ERROR:] Cannot initialize for sequence: nNNLSFIETSALDSTNVE[172]EAFc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_PLD_Slot2-38_1_8058_diatracer.503927.503927.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nNNLSFIETSALDSTNVE[172]EAFc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_PLD_Slot2-38_1_8058_diatracer.505778.505778.2 [INFO:] Please specify modification and rerun PTMProphet ... ​ [INFO:] written 38000/82198 spectrum_queries [ERROR:] Cannot initialize for sequence: n[43]SGLSGTSSSSVSLGDLPANc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_PLD_Slot2-38_1_8058_diatracer.526999.526999.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nIQPSTVYVC[160]NENQSAVc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_PLD_Slot2-38_1_8058_diatracer.531555.531555.2 [INFO:] Please specify modification and rerun PTMProphet ... ​ [INFO:] written 39000/82198 spectrum_queries [ERROR:] Cannot initialize for sequence: nSHINPTGTVLLQLENTMQMSLKDLLc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_PLD_Slot2-38_1_8058_diatracer.542825.542825.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nSHINPTGTVLLQLENTMQMSLKDLLc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_PLD_Slot2-38_1_8058_diatracer.544505.544505.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nLEDLGAALYRLSTEEKc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_PLD_Slot2-38_1_8058_diatracer.548118.548118.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nGAAC[160]SPSPGGGC[160]VPGc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_PLD_Slot2-38_1_8058_diatracer.550575.550575.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nGSVQSM[147]DQGEDADc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_PLD_Slot2-38_1_8058_diatracer.551878.551878.2 [INFO:] Please specify modification and rerun PTMProphet ... ​ [INFO:] written 40000/82198 spectrum_queries [ERROR:] Cannot initialize for sequence: nPHYLHGATGVTGPc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_PLD_Slot2-38_1_8058_diatracer.556475.556475.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nSLAC[160]LAM[147]WLTRc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_PLD_Slot2-38_1_8058_diatracer.560099.560099.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nSVLIVSIPSTNDRc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_PLD_Slot2-38_1_8058_diatracer.562994.562994.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nGPHHLDNSSPGPGSc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_PLD_Slot2-38_1_8058_diatracer.563709.563709.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nSLGLSSQTPMLTSc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_PLD_Slot2-38_1_8058_diatracer.563983.563983.2 [INFO:] Please specify modification and rerun PTMProphet ... ​ [INFO:] written 41000/82198 spectrum_queries [ERROR:] Cannot initialize for sequence: nLGDTPSPPYPATPAGDIM[147]ELc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_PLD_Slot2-38_1_8058_diatracer.569020.569020.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nDEQGISGASEPAAGGc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_PLD_Slot2-38_1_8058_diatracer.571507.571507.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nEMGGSQEEIGLC[160]c[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_PLD_Slot2-38_1_8058_diatracer.574342.574342.2 [INFO:] Please specify modification and rerun PTMProphet ... ​ [INFO:] written 42000/82198 spectrum_queries [ERROR:] Cannot initialize for sequence: nVPLDGSTPDVLHSc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_PLD_Slot2-38_1_8058_diatracer.578049.578049.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nITVVGVGAVGM[147]AC[160]AISILMKc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_PLD_Slot2-38_1_8058_diatracer.579058.579058.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nVQEEDQFDVM[147]GAc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_PLD_Slot2-38_1_8058_diatracer.582506.582506.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nLNTVEQSASQVAGD[158]IRLALQKNDEMc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_PLD_Slot2-38_1_8058_diatracer.584287.584287.4 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nESSALRQAFQIEAPQM[147]APAc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_PLD_Slot2-38_1_8058_diatracer.585241.585241.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nLNVAAELVQM[147]HLc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_PLD_Slot2-38_1_8058_diatracer.585462.585462.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nC[160]LLWLLWPLWPLARVDc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_PLD_Slot2-38_1_8058_diatracer.587090.587090.3 [INFO:] Please specify modification and rerun PTMProphet ... ​ [INFO:] written 43000/82198 spectrum_queries [ERROR:] Cannot initialize for sequence: nSLGLSSQTPMLTSc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_PLD_Slot2-38_1_8058_diatracer.590952.590952.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nGQAPLAPTHTPELc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_PLD_Slot2-38_1_8058_diatracer.591162.591162.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nDKENALMPNWYELGQM[147]SAc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_PLD_Slot2-38_1_8058_diatracer.594106.594106.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nMLEFFIDVAREC[160]FNIGNc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_PLD_Slot2-38_1_8058_diatracer.596702.596702.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nSILDFTTFGAAVFc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_PLD_Slot2-38_1_8058_diatracer.598604.598604.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nMTFPC[160]EM[147]TPPMc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_PLD_Slot2-38_1_8058_diatracer.599448.599448.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nLGDTPSPPYPATPAGDIM[147]ELc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_PLD_Slot2-38_1_8058_diatracer.600485.600485.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nTVIEIINM[147]SVSGIc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_PLD_Slot2-38_1_8058_diatracer.601041.601041.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nGAAAAGGGGGGAAAc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_PLD_Slot2-38_1_8058_diatracer.601681.601681.2 [INFO:] Please specify modification and rerun PTMProphet ... ​ [INFO:] written 44000/82198 spectrum_queries [ERROR:] Cannot initialize for sequence: nQDIDLGAGRc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_PLD_Slot2-38_1_8058_diatracer.604755.604755.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nLHYELEATTALNc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_PLD_Slot2-38_1_8058_diatracer.605808.605808.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nASVRM[147]ISDLIAGGIQPLQc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_PLD_Slot2-38_1_8058_diatracer.606653.606653.4 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nYVALLLSTKLWEc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_PLD_Slot2-38_1_8058_diatracer.607285.607285.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nGEIGLPGPPGHDGEc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_PLD_Slot2-38_1_8058_diatracer.607516.607516.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nMVLGAGTGNGALGSEc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_PLD_Slot2-38_1_8058_diatracer.609969.609969.3 [INFO:] Please specify modification and rerun PTMProphet ... ​ [INFO:] written 45000/82198 spectrum_queries [ERROR:] Cannot initialize for sequence: nTQITVGMSSc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_PLD_Slot2-38_1_8058_diatracer.619235.619235.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nSAVNLYSLSPPGRc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_PLD_Slot2-38_1_8058_diatracer.620215.620215.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nLFIPDLELNVTAAc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_PLD_Slot2-38_1_8058_diatracer.620689.620689.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nLLDLGSGQNc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_PLD_Slot2-38_1_8058_diatracer.622730.622730.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: n[43]NSSPAGTPSc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_PLD_Slot2-38_1_8058_diatracer.623498.623498.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nPQAAPAPTPAQSPEAc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_PLD_Slot2-38_1_8058_diatracer.625757.625757.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nTEM[147]APGASQGDQQc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_PLD_Slot2-38_1_8058_diatracer.625962.625962.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nGEIGLPGPPGHDGEc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_PLD_Slot2-38_1_8058_diatracer.626023.626023.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nMVLGAGTGNGALGSEc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_PLD_Slot2-38_1_8058_diatracer.627236.627236.3 [INFO:] Please specify modification and rerun PTMProphet ... ​ [INFO:] written 46000/82198 spectrum_queries [ERROR:] Cannot initialize for sequence: nASYLEIYNEQVSAVEGTQPTPc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_PLD_Slot2-38_1_8058_diatracer.630766.630766.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: n[43]MMSPSPLAIM[147]LIVPLIM[147]VGDVc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_PLD_Slot2-38_1_8058_diatracer.633029.633029.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nC[160]PEALFQPSFLGME[216]SC[160]GIHE[216]TTFc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_PLD_Slot2-38_1_8058_diatracer.643969.643969.3 [INFO:] Please specify modification and rerun PTMProphet ... ​ [INFO:] written 47000/82198 spectrum_queries [ERROR:] Cannot initialize for sequence: nTTEEALHASHGFMWYTc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_PLD_Slot2-38_1_8058_diatracer.645651.645651.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nIGEERSLC[160]MINYNVNITEDEDPANc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_PLD_Slot2-38_1_8058_diatracer.648537.648537.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nVFSAESGYGIPFC[160]AEPC[160]SRVTVC[160]HLQAVPVC[160]M[147]PVc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_PLD_Slot2-38_1_8058_diatracer.650784.650784.4 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nDITC[160]QNTAPC[160]M[147]YDNHc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_PLD_Slot2-38_1_8058_diatracer.658660.658660.2 [INFO:] Please specify modification and rerun PTMProphet ... ​ [INFO:] written 48000/82198 spectrum_queries [ERROR:] Cannot initialize for sequence: nDAPMQAGVPWLLLTPSGSc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_PLD_Slot2-38_1_8058_diatracer.664333.664333.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nGM[147]PASRHIWEPEC[160]AVVc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_PLD_Slot2-38_1_8058_diatracer.666280.666280.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nHM[147]AQM[147]ANQDPESIMFNc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_PLD_Slot2-38_1_8058_diatracer.669362.669362.2 [INFO:] Please specify modification and rerun PTMProphet ... ​ [INFO:] written 49000/82198 spectrum_queries [ERROR:] Cannot initialize for sequence: nLTM[147]LQETLNLPPc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_PLD_Slot2-38_1_8058_diatracer.677586.677586.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nAALINDISFM[147]SAPc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_PLD_Slot2-38_1_8058_diatracer.679023.679023.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nC[160]LFLGELKDDINc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_PLD_Slot2-38_1_8058_diatracer.679942.679942.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nAALINDISFM[147]SAPc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_PLD_Slot2-38_1_8058_diatracer.681218.681218.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nVLQDSDLSSLGEFLPPVPLIc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_PLD_Slot2-38_1_8058_diatracer.684744.684744.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nAALINDISFM[147]SAPc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_PLD_Slot2-38_1_8058_diatracer.685608.685608.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nWMLSWVASGYGKc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_PLD_Slot2-38_1_8058_diatracer.686431.686431.2 [INFO:] Please specify modification and rerun PTMProphet ... ​ [INFO:] written 50000/82198 spectrum_queries [ERROR:] Cannot initialize for sequence: n[43]MVSLVSGASGYSATSTSSFKKc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_PLD_Slot2-38_1_8058_diatracer.693668.693668.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nVQLAGC[160]SEVAGGVGNc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_PLD_Slot2-38_1_8058_diatracer.694712.694712.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nTQIVYSDDVYKENLVDGFc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_PLD_Slot2-38_1_8058_diatracer.694833.694833.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nVEQHKYIEEVEc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_PLD_Slot2-38_1_8058_diatracer.696110.696110.2 [INFO:] Please specify modification and rerun PTMProphet ... ​ [INFO:] written 51000/82198 spectrum_queries [ERROR:] Cannot initialize for sequence: nGGAGAPPAAEGAEM[147]Rc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_PLD_Slot2-38_1_8058_diatracer.702964.702964.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nSSIYGADSANYATNc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_PLD_Slot2-38_1_8058_diatracer.704135.704135.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nFLELQKVASSSSGNNFLSGSPc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_PLD_Slot2-38_1_8058_diatracer.706527.706527.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: n[43]GDHLDLLLGVVLMAGPVFGIc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_PLD_Slot2-38_1_8058_diatracer.707406.707406.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nVQLAGC[160]SEVAGGVGNc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_PLD_Slot2-38_1_8058_diatracer.712327.712327.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nQPFADLPDLQPPQPSSTGSEc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_PLD_Slot2-38_1_8058_diatracer.714508.714508.3 [INFO:] Please specify modification and rerun PTMProphet ... ​ [INFO:] written 52000/82198 spectrum_queries [ERROR:] Cannot initialize for sequence: nLERTSSVSPSTAEPELSIVFc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_PLD_Slot2-38_1_8058_diatracer.718129.718129.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nEDSFASGESQAAC[160]TMSWDFSHPFMC[160]c[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_PLD_Slot2-38_1_8058_diatracer.721968.721968.4 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nYQLFFFSFLWc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_PLD_Slot2-38_1_8058_diatracer.722202.722202.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nQQQPQMGVTGQRM[147]TVNNLTc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_PLD_Slot2-38_1_8058_diatracer.722418.722418.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nNESGSRSNGRDSPc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_PLD_Slot2-38_1_8058_diatracer.722531.722531.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nC[160]LFLGELKDDINc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_PLD_Slot2-38_1_8058_diatracer.723881.723881.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nPPTSGQHSAMAASSGGc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_PLD_Slot2-38_1_8058_diatracer.726954.726954.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nDPEPDESLLPDGALc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_PLD_Slot2-38_1_8058_diatracer.727294.727294.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nLVHAGPGVPGEGGSGGGc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_PLD_Slot2-38_1_8058_diatracer.727779.727779.3 [INFO:] Please specify modification and rerun PTMProphet ... ​ [INFO:] written 53000/82198 spectrum_queries [ERROR:] Cannot initialize for sequence: nLHPEDFPEEGISSc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_PLD_Slot2-38_1_8058_diatracer.728538.728538.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nEGGLAASC[160]GLc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_PLD_Slot2-38_1_8058_diatracer.729802.729802.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nM[147]LWQRIHQDFAc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_PLD_Slot2-38_1_8058_diatracer.732440.732440.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nALYVVHPTSc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_PLD_Slot2-38_1_8058_diatracer.733029.733029.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nGAAAAGGGGGGAAAc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_PLD_Slot2-38_1_8058_diatracer.733821.733821.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nLGAEDPDLILLTGC[160]SAFTHc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_PLD_Slot2-38_1_8058_diatracer.736171.736171.4 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nILSNGSESIEM[147]GEDc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_PLD_Slot2-38_1_8058_diatracer.737516.737516.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nVFEEFVQGc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_PLD_Slot2-38_1_8058_diatracer.740946.740946.2 [INFO:] Please specify modification and rerun PTMProphet ... ​ [INFO:] written 54000/82198 spectrum_queries [ERROR:] Cannot initialize for sequence: nLFHPILAPc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_PLD_Slot2-38_1_8058_diatracer.742556.742556.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nEGGLAASC[160]GLc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_PLD_Slot2-38_1_8058_diatracer.743021.743021.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nGQRFDPAM[147]FNISPGAVQFc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_PLD_Slot2-38_1_8058_diatracer.748994.748994.4 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nQPMETTQPGVSQSNc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_PLD_Slot2-38_1_8058_diatracer.749403.749403.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nLIADASVPGSDYINAc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_PLD_Slot2-38_1_8058_diatracer.749453.749453.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nFTAAATSTPVSSSQSAPPMSPc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_PLD_Slot2-38_1_8058_diatracer.749468.749468.4 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nGAGTGLSEGLSc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_PLD_Slot2-38_1_8058_diatracer.750821.750821.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nLGLLAGSDKPc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_PLD_Slot2-38_1_8058_diatracer.751772.751772.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nVPSVQNPHEC[160]LINc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_PLD_Slot2-38_1_8058_diatracer.752481.752481.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nGPPELILTASc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_PLD_Slot2-38_1_8058_diatracer.752611.752611.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nPGLPGQPAVSc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_PLD_Slot2-38_1_8058_diatracer.753204.753204.2 [INFO:] Please specify modification and rerun PTMProphet ... ​ [INFO:] written 55000/82198 spectrum_queries [ERROR:] Cannot initialize for sequence: nM[147]PSTTAISSNISSPVc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_PLD_Slot2-38_1_8058_diatracer.755398.755398.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nVLGLTVSQNc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_PLD_Slot2-38_1_8058_diatracer.756307.756307.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nAC[160]C[160]SLGGEQGQPVHMGDPc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_PLD_Slot2-38_1_8058_diatracer.769752.769752.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nLTNSHAM[147]GSFSGVAGGTVGGNc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_PLD_Slot2-38_1_8058_diatracer.770797.770797.2 [INFO:] Please specify modification and rerun PTMProphet ... ​ [INFO:] written 56000/82198 spectrum_queries [ERROR:] Cannot initialize for sequence: nVPATSM[147]YAGFPLM[147]C[160]STANc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_PLD_Slot2-38_1_8058_diatracer.770988.770988.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nEDSFGMLLFGSM[147]STLNVc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_PLD_Slot2-38_1_8058_diatracer.777923.777923.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nM[147]VETFAVTFNTLDAIESc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_PLD_Slot2-38_1_8058_diatracer.786055.786055.2 [INFO:] Please specify modification and rerun PTMProphet ... ​ [INFO:] written 57000/82198 spectrum_queries [ERROR:] Cannot initialize for sequence: nAWGGSWGPGNPIFPQLTLc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_PLD_Slot2-38_1_8058_diatracer.789971.789971.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nDGNFLNIPQQSQSWFLc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_PLD_Slot2-38_1_8058_diatracer.790034.790034.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nELLSPGAPLTKQSRSPSFNM[147]QLISQVc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_PLD_Slot2-38_1_8058_diatracer.790623.790623.3 [INFO:] Please specify modification and rerun PTMProphet ... ​ [INFO:] written 58000/82198 spectrum_queries [ERROR:] Cannot initialize for sequence: nQELPSENEPIYFHVPRLNSYKDPPGc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_PLD_Slot2-38_1_8058_diatracer.806973.806973.4 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nESQPGSGAVEM[147]ESVc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_PLD_Slot2-38_1_8058_diatracer.807100.807100.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nTPIQAGGYGAFPVHc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_PLD_Slot2-38_1_8058_diatracer.809019.809019.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nEEEGGGGGGSPAAAAAAAc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_PLD_Slot2-38_1_8058_diatracer.815956.815956.2 [INFO:] Please specify modification and rerun PTMProphet ... ​ [INFO:] written 59000/82198 spectrum_queries [ERROR:] Cannot initialize for sequence: nPEIHVGGGASYSFHc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_PLD_Slot2-38_1_8058_diatracer.817384.817384.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nLIQNGHINMQLPAGNPNPFSPc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_PLD_Slot2-38_1_8058_diatracer.819029.819029.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nC[160]EDNLSSLM[147]SSTEc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_PLD_Slot2-38_1_8058_diatracer.823083.823083.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nYNLKNFMVINSVAFDHAGTAc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_PLD_Slot2-38_1_8058_diatracer.827548.827548.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nM[147]TDELHQELTAEc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_PLD_Slot2-38_1_8058_diatracer.828873.828873.2 [INFO:] Please specify modification and rerun PTMProphet ... ​ [INFO:] written 60000/82198 spectrum_queries [ERROR:] Cannot initialize for sequence: nGSAWLTSTVPEASVATAAANGNGSc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_PLD_Slot2-38_1_8058_diatracer.830892.830892.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nANGQIVPSYVHPHc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_PLD_Slot2-38_1_8058_diatracer.838969.838969.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nDLPPMKDLGQLSMMIILEPQLLSC[160]WSc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_PLD_Slot2-38_1_8058_diatracer.842299.842299.4 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nHPLQSADIREGAEc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_PLD_Slot2-38_1_8058_diatracer.843574.843574.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nIM[147]NSLQEMKVQLVNGM[147]VPLc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_PLD_Slot2-38_1_8058_diatracer.843758.843758.3 [INFO:] Please specify modification and rerun PTMProphet ... ​ [INFO:] written 61000/82198 spectrum_queries [ERROR:] Cannot initialize for sequence: nEQC[160]GAPLAEc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_PLD_Slot2-38_1_8058_diatracer.847278.847278.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nLEATINELVc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_PLD_Slot2-38_1_8058_diatracer.848346.848346.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nLSDSSAPSSLGTGYFc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_PLD_Slot2-38_1_8058_diatracer.848482.848482.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nLSM[147]RSPLVTWLASAc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_PLD_Slot2-38_1_8058_diatracer.853307.853307.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nPSVGEVDM[147]Ec[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_PLD_Slot2-38_1_8058_diatracer.855624.855624.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nTAHDSNVLHc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_PLD_Slot2-38_1_8058_diatracer.856412.856412.2 [INFO:] Please specify modification and rerun PTMProphet ... ​ [INFO:] written 62000/82198 spectrum_queries [ERROR:] Cannot initialize for sequence: nLC[160]TGPTPPC[160]c[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_PLD_Slot2-38_1_8058_diatracer.856900.856900.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nAAIQGNGDVGAc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_PLD_Slot2-38_1_8058_diatracer.857209.857209.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nYPGPPVGQSEc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_PLD_Slot2-38_1_8058_diatracer.857900.857900.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nYAPAPSNEAPc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_PLD_Slot2-38_1_8058_diatracer.859126.859126.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nAPC[160]WVC[160]C[160]Gc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_PLD_Slot2-38_1_8058_diatracer.860307.860307.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nHLSAAWPGTPLSSRc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_PLD_Slot2-38_1_8058_diatracer.863608.863608.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nLQVSQDRTTALQPSc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_PLD_Slot2-38_1_8058_diatracer.863866.863866.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nSSGDEDSWAPLQTYc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_PLD_Slot2-38_1_8058_diatracer.865876.865876.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nVTLVLRM[147]Lc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_PLD_Slot2-38_1_8058_diatracer.866963.866963.2 [INFO:] Please specify modification and rerun PTMProphet ... ​ [INFO:] written 63000/82198 spectrum_queries [ERROR:] Cannot initialize for sequence: nAGSESASSIGSEGPM[147]TTc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_PLD_Slot2-38_1_8058_diatracer.874646.874646.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nKESQPGSGAVEMESVc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_PLD_Slot2-38_1_8058_diatracer.875353.875353.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nVFASSDTIKc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_PLD_Slot2-38_1_8058_diatracer.877010.877010.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nLQQAQKGTPMKPNTQATPPc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_PLD_Slot2-38_1_8058_diatracer.877334.877334.4 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nAVEVDPSLLLHMLEc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_PLD_Slot2-38_1_8058_diatracer.877907.877907.3 [INFO:] Please specify modification and rerun PTMProphet ... ​ [INFO:] written 64000/82198 spectrum_queries [ERROR:] Cannot initialize for sequence: nLQQAQKGTPMKPNTQATPPc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_PLD_Slot2-38_1_8058_diatracer.880675.880675.4 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nELDSLSPIC[160]c[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_PLD_Slot2-38_1_8058_diatracer.881144.881144.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: n[43]NGTLDHPDQPDLDc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_PLD_Slot2-38_1_8058_diatracer.881750.881750.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nLQQAQKGTPMKPNTQATPPc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_PLD_Slot2-38_1_8058_diatracer.882344.882344.4 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nDM[147]LLGLASDPVLQVAc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_PLD_Slot2-38_1_8058_diatracer.882651.882651.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nEVLHTGLAM[147]LGLPPLSHIc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_PLD_Slot2-38_1_8058_diatracer.887546.887546.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nYDLLGWGTTAGPSGM[147]SGAGALc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_PLD_Slot2-38_1_8058_diatracer.889611.889611.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nSGEGFLC[160]VFSITEMESFc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_PLD_Slot2-38_1_8058_diatracer.890524.890524.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nSDTSLEM[147]TM[147]GNALFLDGSc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_PLD_Slot2-38_1_8058_diatracer.892472.892472.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nNSSISGPFGSRSSDTPM[147]ESc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_PLD_Slot2-38_1_8058_diatracer.896207.896207.2 [INFO:] Please specify modification and rerun PTMProphet ... ​ [INFO:] written 65000/82198 spectrum_queries [ERROR:] Cannot initialize for sequence: nSSPLSQPAMTLSMDSMEQc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_PLD_Slot2-38_1_8058_diatracer.902856.902856.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nSFLEEAKHFM[147]EPNAEWc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_PLD_Slot2-38_1_8058_diatracer.904074.904074.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nYDLLGWGTTAGPSGM[147]SGAGALc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_PLD_Slot2-38_1_8058_diatracer.904426.904426.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nYLESSQSQNLPSGEAPC[160]Vc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_PLD_Slot2-38_1_8058_diatracer.911114.911114.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nALSLSGSSSSPQAQVM[147]VHMc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_PLD_Slot2-38_1_8058_diatracer.913763.913763.2 [INFO:] Please specify modification and rerun PTMProphet ... ​ [INFO:] written 66000/82198 spectrum_queries [ERROR:] Cannot initialize for sequence: nEFGLDSVELAHYDVLLSYPNc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_PLD_Slot2-38_1_8058_diatracer.918140.918140.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nEGAVLYISPSGTELSc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_PLD_Slot2-38_1_8058_diatracer.921239.921239.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nGEAQGSAASAAVAGTAAAc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_PLD_Slot2-38_1_8058_diatracer.924487.924487.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nNIDRSGEAGHPGASGSc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_PLD_Slot2-38_1_8058_diatracer.924923.924923.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nGPGSFC[160]SPSSSC[160]RSc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_PLD_Slot2-38_1_8058_diatracer.925129.925129.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nEGIPPDQQRLIFAc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_PLD_Slot2-38_1_8058_diatracer.925501.925501.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nGEAQGSAASAAVAGTAAAc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_PLD_Slot2-38_1_8058_diatracer.926686.926686.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nAANNVWTLAGNGGGVGAGAGC[160]GGSKAc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_PLD_Slot2-38_1_8058_diatracer.926930.926930.3 [INFO:] Please specify modification and rerun PTMProphet ... ​ [INFO:] written 67000/82198 spectrum_queries [ERROR:] Cannot initialize for sequence: nEGIPPDQQRLIFAc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_PLD_Slot2-38_1_8058_diatracer.929890.929890.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nGEAQGSAASAAVAGTAAAc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_PLD_Slot2-38_1_8058_diatracer.931079.931079.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nSNIWVEMLHASTIc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_PLD_Slot2-38_1_8058_diatracer.935045.935045.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nSFISSTVAQPSEMPPSPLVWEc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_PLD_Slot2-38_1_8058_diatracer.938203.938203.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nNVAPSGEVINLLMEc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_PLD_Slot2-38_1_8058_diatracer.938748.938748.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nQGGSTSLNC[160]THAAVSc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_PLD_Slot2-38_1_8058_diatracer.938945.938945.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nEGQPLLQAVHPLDQPEDPQDFRAEEHVc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_PLD_Slot2-38_1_8058_diatracer.939736.939736.4 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nSSQQGGSTTSLDEPIPMPEDGEDPTDSVPPc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_PLD_Slot2-38_1_8058_diatracer.940367.940367.4 [INFO:] Please specify modification and rerun PTMProphet ... ​ [INFO:] written 68000/82198 spectrum_queries [ERROR:] Cannot initialize for sequence: nQGGSTSLNC[160]THAAVSc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_PLD_Slot2-38_1_8058_diatracer.943342.943342.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nGEAQGSAASAAVAGTAAAc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_PLD_Slot2-38_1_8058_diatracer.944258.944258.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nPLPYSFPTNASPM[147]Pc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_PLD_Slot2-38_1_8058_diatracer.947790.947790.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nDQPC[160]AAGAPPPEANGAc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_PLD_Slot2-38_1_8058_diatracer.949345.949345.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nEGIPPDQQRLIFAc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_PLD_Slot2-38_1_8058_diatracer.949655.949655.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nGEAQGSAASAAVAGTAAAc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_PLD_Slot2-38_1_8058_diatracer.953040.953040.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nGFGFVTM[147]TNYD[158]EAAMAIASLNGc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_PLD_Slot2-38_1_8058_diatracer.954908.954908.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nEGAVLYISPSGTELSc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_PLD_Slot2-38_1_8058_diatracer.956372.956372.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nQGGSTSLNC[160]THAAVSc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_PLD_Slot2-38_1_8058_diatracer.956510.956510.2 [INFO:] Please specify modification and rerun PTMProphet ... ​ [INFO:] written 69000/82198 spectrum_queries [ERROR:] Cannot initialize for sequence: nALAGPDQDKAEDPGRc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_PLD_Slot2-38_1_8058_diatracer.959251.959251.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nEGAVLYISPSGTELSc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_PLD_Slot2-38_1_8058_diatracer.960878.960878.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nFHIYHMGQAGFPEc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_PLD_Slot2-38_1_8058_diatracer.963244.963244.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nRLPGASAQLGDc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_PLD_Slot2-38_1_8058_diatracer.967232.967232.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nFVLPHRFLGc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_PLD_Slot2-38_1_8058_diatracer.967431.967431.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nFVLPHRFLGc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_PLD_Slot2-38_1_8058_diatracer.969181.969181.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nQPPPAEAGAVNRTEAAc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_PLD_Slot2-38_1_8058_diatracer.970336.970336.3 [INFO:] Please specify modification and rerun PTMProphet ... ​ [INFO:] written 70000/82198 spectrum_queries [ERROR:] Cannot initialize for sequence: nAFELLTMHLc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_PLD_Slot2-38_1_8058_diatracer.974123.974123.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nEANVPSVPALEAGHNVc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_PLD_Slot2-38_1_8058_diatracer.976169.976169.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nYYGGGYGSTQc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_PLD_Slot2-38_1_8058_diatracer.978436.978436.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nLVLSLAAVYEc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_PLD_Slot2-38_1_8058_diatracer.979364.979364.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nNTSALPC[160]KM[147]WGMPGc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_PLD_Slot2-38_1_8058_diatracer.980634.980634.3 [INFO:] Please specify modification and rerun PTMProphet ... ​ [INFO:] written 71000/82198 spectrum_queries [ERROR:] Cannot initialize for sequence: nPDHADFWGFASELLc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_PLD_Slot2-38_1_8058_diatracer.983162.983162.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nSFGME[172]VAANIVPTNMc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_PLD_Slot2-38_1_8058_diatracer.985292.985292.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nAQGTPAYSYVPPHWc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_PLD_Slot2-38_1_8058_diatracer.985853.985853.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nYGNTVASLQAWLEDAc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_PLD_Slot2-38_1_8058_diatracer.986343.986343.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nNLGGIFLKGPHDAEVc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_PLD_Slot2-38_1_8058_diatracer.987608.987608.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nGGGVPQVC[160]PHYPQQDc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_PLD_Slot2-38_1_8058_diatracer.988041.988041.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nGD[158]IFNELM[147]LLANTGAc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_PLD_Slot2-38_1_8058_diatracer.989914.989914.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nEIQMDSPM[147]LLADLPDLQDPc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_PLD_Slot2-38_1_8058_diatracer.990725.990725.4 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nQLSSNQPQQGVTPYGHPSHFc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_PLD_Slot2-38_1_8058_diatracer.993590.993590.4 [INFO:] Please specify modification and rerun PTMProphet ... ​ [INFO:] written 72000/82198 spectrum_queries [ERROR:] Cannot initialize for sequence: nLVLSLAAVYEc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_PLD_Slot2-38_1_8058_diatracer.995105.995105.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nLEPLSVTPAGAc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_PLD_Slot2-38_1_8058_diatracer.996057.996057.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: n[43]MPLC[160]PLAHAM[147]QPQSc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_PLD_Slot2-38_1_8058_diatracer.996782.996782.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nQQPVAISSAPAFGGNSVc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_PLD_Slot2-38_1_8058_diatracer.1000317.1000317.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nVDC[160]DQHYASc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_PLD_Slot2-38_1_8058_diatracer.1002445.1002445.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nNLGGIFLKGPHDAEVc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_PLD_Slot2-38_1_8058_diatracer.1003356.1003356.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nVWQVTIGTRc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_PLD_Slot2-38_1_8058_diatracer.1003415.1003415.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nVWQVTIGTRc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_PLD_Slot2-38_1_8058_diatracer.1005168.1005168.2 [INFO:] Please specify modification and rerun PTMProphet ... ​ [INFO:] written 73000/82198 spectrum_queries [ERROR:] Cannot initialize for sequence: nAVIGSTYMLTQD[202]E[216]VLWc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_PLD_Slot2-38_1_8058_diatracer.1011068.1011068.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nQEGEPGPGPAPGSGGSSSSSDGDc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_PLD_Slot2-38_1_8058_diatracer.1015052.1015052.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nVTNIPQGM[147]VTDQFGMIGLLTFIRAAETDc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_PLD_Slot2-38_1_8058_diatracer.1018888.1018888.3 [INFO:] Please specify modification and rerun PTMProphet ... ​ [INFO:] written 74000/82198 spectrum_queries [ERROR:] Cannot initialize for sequence: nPDAAAVAAAAAATEADKHSPEc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_PLD_Slot2-38_1_8058_diatracer.1027755.1027755.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nLGSIDNC[160]WPM[147]LSIFFTEc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_PLD_Slot2-38_1_8058_diatracer.1032096.1032096.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nVDFLEDVEGSGGSAPGPAPPAc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_PLD_Slot2-38_1_8058_diatracer.1033618.1033618.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nLFQVSDNFTEYLIYLTc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_PLD_Slot2-38_1_8058_diatracer.1034756.1034756.2 [INFO:] Please specify modification and rerun PTMProphet ... ​ [INFO:] written 75000/82198 spectrum_queries [ERROR:] Cannot initialize for sequence: nE[172]GGASGE[172]GPGPSGSAASAAAASAAAASAAc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_PLD_Slot2-38_1_8058_diatracer.1042843.1042843.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nM[147]LIPFSNPRVLPGPc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_PLD_Slot2-38_1_8058_diatracer.1043890.1043890.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nTEPAALSSQEAEEVEEEGAPDYENLQELNc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_PLD_Slot2-38_1_8058_diatracer.1045112.1045112.4 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nM[147]LIPFSNPRVLPGPc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_PLD_Slot2-38_1_8058_diatracer.1048085.1048085.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nSPYHC[160]SFPM[147]QGDAc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_PLD_Slot2-38_1_8058_diatracer.1048176.1048176.2 [INFO:] Please specify modification and rerun PTMProphet ... ​ [INFO:] written 76000/82198 spectrum_queries [ERROR:] Cannot initialize for sequence: nSPYHC[160]SFPM[147]QGDAc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_PLD_Slot2-38_1_8058_diatracer.1058647.1058647.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nSPYHC[160]SFPM[147]QGDAc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_PLD_Slot2-38_1_8058_diatracer.1058651.1058651.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nDGAEGQPALAETSPTAPEC[160]PPPAEc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_PLD_Slot2-38_1_8058_diatracer.1060070.1060070.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nM[147]LIPFSNPRVLPGPc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_PLD_Slot2-38_1_8058_diatracer.1060651.1060651.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nSPYHC[160]SFPM[147]QGDAc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_PLD_Slot2-38_1_8058_diatracer.1060742.1060742.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nPNSASATASGPGNAGSTAc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_PLD_Slot2-38_1_8058_diatracer.1061104.1061104.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nYVALGAAAAAIGSGTAGVATGPGGGGAAAAc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_PLD_Slot2-38_1_8058_diatracer.1064307.1064307.3 [INFO:] Please specify modification and rerun PTMProphet ... ​ [INFO:] written 77000/82198 spectrum_queries [ERROR:] Cannot initialize for sequence: nM[147]LIPFSNPRVLPGPc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_PLD_Slot2-38_1_8058_diatracer.1064838.1064838.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nSSVFSGSDSLASAGIEC[160]DDGHVPAc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_PLD_Slot2-38_1_8058_diatracer.1066531.1066531.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nAKDFSAIEGMDPKDAc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_PLD_Slot2-38_1_8058_diatracer.1066634.1066634.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nSPYHC[160]SFPM[147]QGDAc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_PLD_Slot2-38_1_8058_diatracer.1067027.1067027.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nEFLNITTEENLWc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_PLD_Slot2-38_1_8058_diatracer.1073473.1073473.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nHSDPNAPDSSSDGLGSc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_PLD_Slot2-38_1_8058_diatracer.1074550.1074550.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nSPYHC[160]SFPM[147]QGDAc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_PLD_Slot2-38_1_8058_diatracer.1077502.1077502.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nAQTVSGSGTQETAGDGSc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_PLD_Slot2-38_1_8058_diatracer.1077687.1077687.2 [INFO:] Please specify modification and rerun PTMProphet ... ​ [INFO:] written 78000/82198 spectrum_queries [ERROR:] Cannot initialize for sequence: nSPYHC[160]SFPM[147]QGDAc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_PLD_Slot2-38_1_8058_diatracer.1081689.1081689.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nVLLDEVSVLENLVAEc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_PLD_Slot2-38_1_8058_diatracer.1084155.1084155.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nDDDILLNLVGC[160]ENSVTEGQEc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_PLD_Slot2-38_1_8058_diatracer.1084328.1084328.4 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nDMSEGSWAPPc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_PLD_Slot2-38_1_8058_diatracer.1084358.1084358.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nELWERGLTGISNFQAc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_PLD_Slot2-38_1_8058_diatracer.1085168.1085168.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nNLC[160]LPGSISAGc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_PLD_Slot2-38_1_8058_diatracer.1087031.1087031.2 [INFO:] Please specify modification and rerun PTMProphet ... ​ [INFO:] written 79000/82198 spectrum_queries [ERROR:] Cannot initialize for sequence: nYIVASDYSTSNHEGRc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_PLD_Slot2-38_1_8058_diatracer.1094461.1094461.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nEHVQDFAM[147]QLSSSMAc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_PLD_Slot2-38_1_8058_diatracer.1095507.1095507.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nELPLLGDTEWALEEQc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_PLD_Slot2-38_1_8058_diatracer.1095574.1095574.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nELWERGLTGISNFQAc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_PLD_Slot2-38_1_8058_diatracer.1097011.1097011.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nGHYAGM[147]GSSGVGc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_PLD_Slot2-38_1_8058_diatracer.1099035.1099035.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nIVTSDLEIVNc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_PLD_Slot2-38_1_8058_diatracer.1101433.1101433.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nVNWM[147]YFYEYEPIc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_PLD_Slot2-38_1_8058_diatracer.1102453.1102453.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nEIQRTLM[147]EIM[147]KQLc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_PLD_Slot2-38_1_8058_diatracer.1102573.1102573.3 [INFO:] Please specify modification and rerun PTMProphet ... ​ [INFO:] written 80000/82198 spectrum_queries [ERROR:] Cannot initialize for sequence: nMATAVEPEDQc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_PLD_Slot2-38_1_8058_diatracer.1104697.1104697.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nPGGGGVGPGPGAAGPM[147]LGGVVc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_PLD_Slot2-38_1_8058_diatracer.1104784.1104784.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nRASALGGSGGGIVLYDYSAVAGAAPc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_PLD_Slot2-38_1_8058_diatracer.1105193.1105193.4 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nLSEGKGLEGPLc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_PLD_Slot2-38_1_8058_diatracer.1107041.1107041.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nNAPLDGLSVSSSSTGSLGSc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_PLD_Slot2-38_1_8058_diatracer.1107097.1107097.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nNTSVGDFNYNREEKc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_PLD_Slot2-38_1_8058_diatracer.1108415.1108415.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nEFGQLLLETGANEEPAc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_PLD_Slot2-38_1_8058_diatracer.1108739.1108739.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nVSRYSLWFKQIM[147]Nc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_PLD_Slot2-38_1_8058_diatracer.1109835.1109835.3 [INFO:] Please specify modification and rerun PTMProphet ... ​ [INFO:] written 81000/82198 spectrum_queries [ERROR:] Cannot initialize for sequence: nM[147]APTSQFFLASGTAQAc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_PLD_Slot2-38_1_8058_diatracer.1115861.1115861.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nTNDILSM[147]PGPLNIEPAc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_PLD_Slot2-38_1_8058_diatracer.1118068.1118068.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nVGWVGLWTRAALATVAc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_PLD_Slot2-38_1_8058_diatracer.1118424.1118424.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nIVTSDLEIVNc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_PLD_Slot2-38_1_8058_diatracer.1121170.1121170.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nNESNSAGSPADM[147]ELDSGc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_PLD_Slot2-38_1_8058_diatracer.1121868.1121868.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nTNGYTQRHEc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_PLD_Slot2-38_1_8058_diatracer.1123045.1123045.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nLQFTYDGEQc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_PLD_Slot2-38_1_8058_diatracer.1123499.1123499.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nPPETEAQRGPC[160]LQWc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_PLD_Slot2-38_1_8058_diatracer.1124288.1124288.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nRASALGGSGGGIVLYDYSAVAGAAPc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_PLD_Slot2-38_1_8058_diatracer.1124950.1124950.4 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nAAEAGETQDPHAQLSGSc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_PLD_Slot2-38_1_8058_diatracer.1126286.1126286.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nAEGLVTFAPWC[160]ATTASc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_PLD_Slot2-38_1_8058_diatracer.1126396.1126396.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nRASALGGSGGGIVLYDYSAVAGAAPc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_PLD_Slot2-38_1_8058_diatracer.1126929.1126929.4 [INFO:] Please specify modification and rerun PTMProphet ... ​ [INFO:] written 82000/82198 spectrum_queries [INFO:] done ... [INFO:] Writing file interact-20240927_SW-KF_S1_PLD_Slot2-38_1_8058_diatracer.mod.pep.xml ... [INFO:] done ... Process 'PTMProphet' finished, exit code: 0 [INFO:] Using statically set 15 PPM tolerance ... [INFO:] Writing file interact-20240927_SW-KF_S1_sup_Slot2-37_1_8056_diatracer.pep.xml.tmp.a82780 ... [INFO:] Creating 1 threads [INFO:] Wait for threads to finish ... [INFO:] Reading file interact-20240927_SW-KF_S1_sup_Slot2-37_1_8056_diatracer.pep.xml ... [ERROR:] Cannot initialize for sequence: nDLPTSQFLPQSVLGMDPLTc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_sup_Slot2-37_1_8056_diatracer.03370.03370.2 [INFO:] Please specify modification and rerun PTMProphet ... ​ [INFO:] processed 2000/186751 spectrum_queries [ERROR:] Cannot initialize for sequence: nIYHTIAYLTPLPQPNRALSFFVGYGVTLc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_sup_Slot2-37_1_8056_diatracer.11160.11160.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nFLTLMGTSLHLVFQM[147]GVIFPQc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_sup_Slot2-37_1_8056_diatracer.15428.15428.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nLGQAVPGPLGSAAGAAAAAAc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_sup_Slot2-37_1_8056_diatracer.15606.15606.2 [INFO:] Please specify modification and rerun PTMProphet ... ​ [INFO:] processed 3000/186751 spectrum_queries [ERROR:] Cannot initialize for sequence: nMKPSNEEATAAANGNGSc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_sup_Slot2-37_1_8056_diatracer.18072.18072.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nYPSKSSLVADC[160]AITVc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_sup_Slot2-37_1_8056_diatracer.18443.18443.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nEKEQNEAEERSSRc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_sup_Slot2-37_1_8056_diatracer.19178.19178.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nALAAILFGAVLLAAVALAVC[160]VAKLSc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_sup_Slot2-37_1_8056_diatracer.19260.19260.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nSQFSAAAVPSTRSLFAc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_sup_Slot2-37_1_8056_diatracer.21061.21061.2 [INFO:] Please specify modification and rerun PTMProphet ... ​ [INFO:] processed 4000/186751 spectrum_queries [ERROR:] Cannot initialize for sequence: nKGEAQGSAASAAVAGTAAAc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_sup_Slot2-37_1_8056_diatracer.22270.22270.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nDINQLSEALLSLNFc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_sup_Slot2-37_1_8056_diatracer.23424.23424.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nHILDDISTMFDALADQLDAMLDc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_sup_Slot2-37_1_8056_diatracer.23784.23784.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nC[160]SM[147]AALFIITTYGKc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_sup_Slot2-37_1_8056_diatracer.23964.23964.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nGEIWNIAAPKKDTC[160]YNGSVALIQMEPFYc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_sup_Slot2-37_1_8056_diatracer.24788.24788.4 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nMSSLLPTMWLGAQNGc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_sup_Slot2-37_1_8056_diatracer.26128.26128.2 [INFO:] Please specify modification and rerun PTMProphet ... ​ [INFO:] processed 5000/186751 spectrum_queries [ERROR:] Cannot initialize for sequence: nE[172]C[160]ILGMNPSRDVHc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_sup_Slot2-37_1_8056_diatracer.26521.26521.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nALQDAFSGLFWQPSc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_sup_Slot2-37_1_8056_diatracer.27987.27987.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nM[147]SLTLNQVIQDAQKc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_sup_Slot2-37_1_8056_diatracer.29085.29085.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nYLPELLGNTGLLM[147]Kc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_sup_Slot2-37_1_8056_diatracer.30070.30070.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nINEAFIEM[147]ATTEDAc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_sup_Slot2-37_1_8056_diatracer.31232.31232.2 [INFO:] Please specify modification and rerun PTMProphet ... ​ [INFO:] processed 6000/186751 spectrum_queries [ERROR:] Cannot initialize for sequence: nQASDLGLAPALPEPMGc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_sup_Slot2-37_1_8056_diatracer.32596.32596.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nFPGFGTVVVC[160]SPQSDc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_sup_Slot2-37_1_8056_diatracer.33660.33660.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nYLPELLGNTGLLM[147]Kc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_sup_Slot2-37_1_8056_diatracer.36120.36120.2 [INFO:] Please specify modification and rerun PTMProphet ... ​ [INFO:] processed 7000/186751 spectrum_queries [ERROR:] Cannot initialize for sequence: nEAAAFRAPQQWHYc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_sup_Slot2-37_1_8056_diatracer.37504.37504.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nKANDGEWYHVDIQc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_sup_Slot2-37_1_8056_diatracer.39127.39127.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nQPPPAEAGAVNRTEAAc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_sup_Slot2-37_1_8056_diatracer.39143.39143.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nSALQAIGVEAHQLLSVc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_sup_Slot2-37_1_8056_diatracer.39597.39597.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nINEAFIEM[147]ATTEDAc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_sup_Slot2-37_1_8056_diatracer.40432.40432.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nIM[147]DQAITVGAPVIGLNDSGGARIQc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_sup_Slot2-37_1_8056_diatracer.41086.41086.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nC[160]DLSSLQPLPPGFKc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_sup_Slot2-37_1_8056_diatracer.41924.41924.2 [INFO:] Please specify modification and rerun PTMProphet ... ​ [INFO:] processed 8000/186751 spectrum_queries [ERROR:] Cannot initialize for sequence: nQPPPAEAGAVNRTEAAc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_sup_Slot2-37_1_8056_diatracer.42537.42537.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nQATDLLGWEEQSFYVAVDEFTc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_sup_Slot2-37_1_8056_diatracer.44802.44802.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nDVSAAPGDRSC[160]PSPVRAGTASSWVc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_sup_Slot2-37_1_8056_diatracer.46635.46635.3 [INFO:] Please specify modification and rerun PTMProphet ... ​ [INFO:] processed 9000/186751 spectrum_queries [ERROR:] Cannot initialize for sequence: nFLVQLDDYSLSSTC[160]C[160]FLTFc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_sup_Slot2-37_1_8056_diatracer.48514.48514.4 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nEVASQLGYEKc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_sup_Slot2-37_1_8056_diatracer.48970.48970.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: n[43]SKQQPTQFINPETPGYVGFANc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_sup_Slot2-37_1_8056_diatracer.51229.51229.4 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nVADEVVLPRQc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_sup_Slot2-37_1_8056_diatracer.51716.51716.2 [INFO:] Please specify modification and rerun PTMProphet ... ​ [INFO:] processed 10000/186751 spectrum_queries [ERROR:] Cannot initialize for sequence: nTVSYAVEFHPDTGDIIM[147]EFRc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_sup_Slot2-37_1_8056_diatracer.54179.54179.4 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nVLQLQGQGVQVc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_sup_Slot2-37_1_8056_diatracer.54217.54217.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nALSPSPSGTGDEc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_sup_Slot2-37_1_8056_diatracer.56199.56199.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nKFVEWLQNAc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_sup_Slot2-37_1_8056_diatracer.57162.57162.2 [INFO:] Please specify modification and rerun PTMProphet ... ​ [INFO:] processed 11000/186751 spectrum_queries [ERROR:] Cannot initialize for sequence: nLHEEVEAASLFAPVRSc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_sup_Slot2-37_1_8056_diatracer.61070.61070.3 [INFO:] Please specify modification and rerun PTMProphet ... ​ [INFO:] processed 12000/186751 spectrum_queries [ERROR:] Cannot initialize for sequence: nQSVLQGDTFKGc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_sup_Slot2-37_1_8056_diatracer.65243.65243.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nTVSQGPLLAPDGPLAQSPc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_sup_Slot2-37_1_8056_diatracer.66233.66233.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nVGQTGLELLTSc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_sup_Slot2-37_1_8056_diatracer.66533.66533.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nLSGPGATDSPPALc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_sup_Slot2-37_1_8056_diatracer.67789.67789.2 [INFO:] Please specify modification and rerun PTMProphet ... ​ [INFO:] processed 13000/186751 spectrum_queries [ERROR:] Cannot initialize for sequence: nGQSPQSSPDLPVHYIPVAPDSNTc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_sup_Slot2-37_1_8056_diatracer.70390.70390.4 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nLANIETEFKEc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_sup_Slot2-37_1_8056_diatracer.70456.70456.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nLTTTSPC[160]QATVFSM[147]ITc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_sup_Slot2-37_1_8056_diatracer.72070.72070.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nPPSIYMITPNGc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_sup_Slot2-37_1_8056_diatracer.73396.73396.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nEPAVLMGILGNc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_sup_Slot2-37_1_8056_diatracer.73980.73980.2 [INFO:] Please specify modification and rerun PTMProphet ... ​ [INFO:] processed 14000/186751 spectrum_queries [ERROR:] Cannot initialize for sequence: nVQSLHKSMEPc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_sup_Slot2-37_1_8056_diatracer.76063.76063.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nALDDMISTLKc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_sup_Slot2-37_1_8056_diatracer.76484.76484.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nLGLLAGFAFLTGVGLGPALEFC[160]IAc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_sup_Slot2-37_1_8056_diatracer.78126.78126.4 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nTQAIVC[160]QQLDLTHLKc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_sup_Slot2-37_1_8056_diatracer.78491.78491.3 [INFO:] Please specify modification and rerun PTMProphet ... ​ [INFO:] processed 15000/186751 spectrum_queries [ERROR:] Cannot initialize for sequence: nPGDVPVVTFHPc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_sup_Slot2-37_1_8056_diatracer.81993.81993.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nDINLASFIEQVAVSMTc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_sup_Slot2-37_1_8056_diatracer.82884.82884.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nELAEDDSILKc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_sup_Slot2-37_1_8056_diatracer.82906.82906.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nQSVLQGDTFKGc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_sup_Slot2-37_1_8056_diatracer.83205.83205.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nEETSKALQNEc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_sup_Slot2-37_1_8056_diatracer.83374.83374.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nTATLPPQNPIVc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_sup_Slot2-37_1_8056_diatracer.84177.84177.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nC[160]PHISFTGNIC[160]VQPPc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_sup_Slot2-37_1_8056_diatracer.85013.85013.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nVAAGSLTAGPALRSPGAVAPM[147]SPGLPc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_sup_Slot2-37_1_8056_diatracer.85770.85770.4 [INFO:] Please specify modification and rerun PTMProphet ... ​ [INFO:] processed 16000/186751 spectrum_queries [ERROR:] Cannot initialize for sequence: nEALMPPLEQLc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_sup_Slot2-37_1_8056_diatracer.85817.85817.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nLFLEMLEAKVc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_sup_Slot2-37_1_8056_diatracer.86061.86061.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nPC[160]ALPNSSTWc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_sup_Slot2-37_1_8056_diatracer.87699.87699.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nEIQNGNLHESc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_sup_Slot2-37_1_8056_diatracer.88166.88166.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nTGSSVTTVATSQIVNESVc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_sup_Slot2-37_1_8056_diatracer.90341.90341.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: n[43]MALLEDEAQERDESSc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_sup_Slot2-37_1_8056_diatracer.91279.91279.3 [INFO:] Please specify modification and rerun PTMProphet ... ​ [INFO:] processed 17000/186751 spectrum_queries [ERROR:] Cannot initialize for sequence: nFSGC[160]TLTDGTLWLTPVc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_sup_Slot2-37_1_8056_diatracer.93640.93640.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nGEIGPM[147]GIPGPQGPPGPHc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_sup_Slot2-37_1_8056_diatracer.94389.94389.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nMTSTTAEGAGEQc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_sup_Slot2-37_1_8056_diatracer.95786.95786.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nQYYTLLNQAPD[158]M[147]LHc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_sup_Slot2-37_1_8056_diatracer.96430.96430.3 [INFO:] Please specify modification and rerun PTMProphet ... ​ [INFO:] processed 18000/186751 spectrum_queries [ERROR:] Cannot initialize for sequence: nDYTVTQVPSMc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_sup_Slot2-37_1_8056_diatracer.98354.98354.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nVAWGGAEC[160]C[160]NAFSGNESc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_sup_Slot2-37_1_8056_diatracer.101771.101771.3 [INFO:] Please specify modification and rerun PTMProphet ... ​ [INFO:] processed 19000/186751 spectrum_queries [ERROR:] Cannot initialize for sequence: nAPATTNNTAHQc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_sup_Slot2-37_1_8056_diatracer.102737.102737.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nC[160]ATRGFVC[160]IC[160]VC[160]VHAc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_sup_Slot2-37_1_8056_diatracer.103894.103894.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nVRDAAANLMHTc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_sup_Slot2-37_1_8056_diatracer.104248.104248.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nQSVLQGDTFKGc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_sup_Slot2-37_1_8056_diatracer.105950.105950.2 [INFO:] Please specify modification and rerun PTMProphet ... ​ [INFO:] processed 20000/186751 spectrum_queries [ERROR:] Cannot initialize for sequence: nSSETPFPPIVGQPLC[160]PFSVc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_sup_Slot2-37_1_8056_diatracer.112266.112266.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nAMIHSGKGEIQLASTPPNLNc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_sup_Slot2-37_1_8056_diatracer.114714.114714.2 [INFO:] Please specify modification and rerun PTMProphet ... ​ [INFO:] processed 22000/186751 spectrum_queries [ERROR:] Cannot initialize for sequence: nC[160]SAPKYIDYLMTWVQDQc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_sup_Slot2-37_1_8056_diatracer.122063.122063.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nFLSPPSASTRSPAPSPGc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_sup_Slot2-37_1_8056_diatracer.122504.122504.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nQALLM[147]SAM[147]VGQPVPVGKAHQWWc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_sup_Slot2-37_1_8056_diatracer.125619.125619.3 [INFO:] Please specify modification and rerun PTMProphet ... ​ [INFO:] processed 23000/186751 spectrum_queries [ERROR:] Cannot initialize for sequence: nQAVEAQLALVEERSAc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_sup_Slot2-37_1_8056_diatracer.126964.126964.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nLLLEEEDSDAYALNHTLSVEGFc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_sup_Slot2-37_1_8056_diatracer.128605.128605.3 [INFO:] Please specify modification and rerun PTMProphet ... ​ [INFO:] processed 24000/186751 spectrum_queries [ERROR:] Cannot initialize for sequence: nLYAYTFIC[160]VLQEC[160]c[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_sup_Slot2-37_1_8056_diatracer.132101.132101.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nGTGGVDTAAVGGVFDVSNAc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_sup_Slot2-37_1_8056_diatracer.132233.132233.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nVLGDENEPAPGPLAEYc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_sup_Slot2-37_1_8056_diatracer.133087.133087.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nSPVNMVTVAMVAGQC[160]EFAHILHSc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_sup_Slot2-37_1_8056_diatracer.133326.133326.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nSSPSFMVSTLVSTLDAc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_sup_Slot2-37_1_8056_diatracer.136470.136470.2 [INFO:] Please specify modification and rerun PTMProphet ... ​ [INFO:] processed 26000/186751 spectrum_queries [ERROR:] Cannot initialize for sequence: nTGGFLGTTSPGPMAELYc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_sup_Slot2-37_1_8056_diatracer.142773.142773.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nAQSVLYQSDLDESESc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_sup_Slot2-37_1_8056_diatracer.144824.144824.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nTSYLEPPPDGYENVTNIVPPYNAFSAQGMPEc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_sup_Slot2-37_1_8056_diatracer.148056.148056.4 [INFO:] Please specify modification and rerun PTMProphet ... ​ [INFO:] processed 27000/186751 spectrum_queries [ERROR:] Cannot initialize for sequence: nDEVFHFFNVLASHSc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_sup_Slot2-37_1_8056_diatracer.151343.151343.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nRELQQVTAGEAASIHc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_sup_Slot2-37_1_8056_diatracer.151574.151574.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: n[43]SVGVSTSAPLSPTSGTSVGM[147]STFSIMc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_sup_Slot2-37_1_8056_diatracer.152643.152643.3 [INFO:] Please specify modification and rerun PTMProphet ... ​ [INFO:] processed 28000/186751 spectrum_queries [ERROR:] Cannot initialize for sequence: nASSVNAAPTSFLc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_sup_Slot2-37_1_8056_diatracer.156573.156573.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nPVQLGAALGALAGAc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_sup_Slot2-37_1_8056_diatracer.156633.156633.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nDQKSKENGASVc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_sup_Slot2-37_1_8056_diatracer.158489.158489.2 [INFO:] Please specify modification and rerun PTMProphet ... ​ [INFO:] processed 29000/186751 spectrum_queries [ERROR:] Cannot initialize for sequence: nIDEANLLDTMSc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_sup_Slot2-37_1_8056_diatracer.159467.159467.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nLQESLQQRALc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_sup_Slot2-37_1_8056_diatracer.160144.160144.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nLTATAGFFGGSALc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_sup_Slot2-37_1_8056_diatracer.161320.161320.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nVWTSAETPLTILLQQPc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_sup_Slot2-37_1_8056_diatracer.161571.161571.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nGQILMPNIGYGSc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_sup_Slot2-37_1_8056_diatracer.163226.163226.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nAALAPLLALC[160]LLPALLPPc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_sup_Slot2-37_1_8056_diatracer.163680.163680.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nELTSGC[160]TLASSSc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_sup_Slot2-37_1_8056_diatracer.163895.163895.2 [INFO:] Please specify modification and rerun PTMProphet ... ​ [INFO:] processed 30000/186751 spectrum_queries [ERROR:] Cannot initialize for sequence: nGELGGLGELNLHc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_sup_Slot2-37_1_8056_diatracer.164086.164086.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nVLAAETTSQQEc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_sup_Slot2-37_1_8056_diatracer.164181.164181.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nTLEQLYEAAQGPPEAASAc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_sup_Slot2-37_1_8056_diatracer.164468.164468.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nLKNNSPGTAEGC[160]GGGGGGGGGGc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_sup_Slot2-37_1_8056_diatracer.164598.164598.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nEYQTVRSEWc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_sup_Slot2-37_1_8056_diatracer.165263.165263.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nVDVFTNLGYRAFSLSFc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_sup_Slot2-37_1_8056_diatracer.165527.165527.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nDHPAFAPLYFPMELHRKEALTc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_sup_Slot2-37_1_8056_diatracer.165584.165584.4 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nLQGGGGELGFMGADAAYAVc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_sup_Slot2-37_1_8056_diatracer.166037.166037.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nRLIALETEMC[160]c[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_sup_Slot2-37_1_8056_diatracer.167566.167566.2 [INFO:] Please specify modification and rerun PTMProphet ... ​ [INFO:] processed 31000/186751 spectrum_queries [ERROR:] Cannot initialize for sequence: nIPRESHTDC[160]EHQVAKc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_sup_Slot2-37_1_8056_diatracer.169472.169472.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nIDEANLLDTMSc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_sup_Slot2-37_1_8056_diatracer.169820.169820.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nGEPGPPLGPEAADc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_sup_Slot2-37_1_8056_diatracer.173249.173249.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nMGASVLLLLATPLLLQWc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_sup_Slot2-37_1_8056_diatracer.173965.173965.3 [INFO:] Please specify modification and rerun PTMProphet ... ​ [INFO:] processed 32000/186751 spectrum_queries [ERROR:] Cannot initialize for sequence: nPGQPSVLGEPERWDVSAc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_sup_Slot2-37_1_8056_diatracer.176145.176145.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nHATFVDGLSIHHSFSRc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_sup_Slot2-37_1_8056_diatracer.176954.176954.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nVIGGFAGTALGAWLGSPPSSc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_sup_Slot2-37_1_8056_diatracer.178273.178273.3 [INFO:] Please specify modification and rerun PTMProphet ... ​ [INFO:] processed 33000/186751 spectrum_queries [ERROR:] Cannot initialize for sequence: nNEIDLESELKSEQVTEc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_sup_Slot2-37_1_8056_diatracer.182264.182264.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nDTGLATFTVSEWPTGTQLDIMQc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_sup_Slot2-37_1_8056_diatracer.183529.183529.4 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nNPAKIILTVPIEMGSQDc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_sup_Slot2-37_1_8056_diatracer.183744.183744.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nKAVQGGGATPVVGAVQGPVPc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_sup_Slot2-37_1_8056_diatracer.184044.184044.3 [INFO:] Please specify modification and rerun PTMProphet ... ​ [INFO:] processed 34000/186751 spectrum_queries [ERROR:] Cannot initialize for sequence: nAE[172]AQLGTLAAAVAc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_sup_Slot2-37_1_8056_diatracer.187065.187065.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nDAPILC[160]C[160]C[160]C[160]WSEWSGAHFQFc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_sup_Slot2-37_1_8056_diatracer.187863.187863.4 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nSWSVPPLAPLC[160]c[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_sup_Slot2-37_1_8056_diatracer.189754.189754.2 [INFO:] Please specify modification and rerun PTMProphet ... ​ [INFO:] processed 35000/186751 spectrum_queries [ERROR:] Cannot initialize for sequence: nC[160]VGSGAGTGAPDLAc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_sup_Slot2-37_1_8056_diatracer.190001.190001.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nAE[172]AQLGTLAAAVAc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_sup_Slot2-37_1_8056_diatracer.192052.192052.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nQC[160]REGQQEGPDSPETHLAGSC[160]Qc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_sup_Slot2-37_1_8056_diatracer.192492.192492.4 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nQDGSSLSVNNLAc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_sup_Slot2-37_1_8056_diatracer.193495.193495.2 [INFO:] Please specify modification and rerun PTMProphet ... ​ [INFO:] processed 36000/186751 spectrum_queries [ERROR:] Cannot initialize for sequence: nLLNNPHNTSQLKIRMGc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_sup_Slot2-37_1_8056_diatracer.195559.195559.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nDLSDAGRVC[160]LGc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_sup_Slot2-37_1_8056_diatracer.198577.198577.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nAE[172]AQLGTLAAAVAc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_sup_Slot2-37_1_8056_diatracer.199528.199528.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nENVTPLPTRASc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_sup_Slot2-37_1_8056_diatracer.199578.199578.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nNEIDLESELKSEQVTEc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_sup_Slot2-37_1_8056_diatracer.199728.199728.3 [INFO:] Please specify modification and rerun PTMProphet ... ​ [INFO:] processed 37000/186751 spectrum_queries [ERROR:] Cannot initialize for sequence: nTLQNENELDQc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_sup_Slot2-37_1_8056_diatracer.200895.200895.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nVTPSVTSLLNGEESTGMLNSLIWc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_sup_Slot2-37_1_8056_diatracer.202016.202016.4 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nVEIDQQQLTQQQLNGNc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_sup_Slot2-37_1_8056_diatracer.202020.202020.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nENVTPLPTRASc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_sup_Slot2-37_1_8056_diatracer.202069.202069.2 [INFO:] Please specify modification and rerun PTMProphet ... ​ [INFO:] processed 38000/186751 spectrum_queries [ERROR:] Cannot initialize for sequence: nVPGEKRSPLEGc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_sup_Slot2-37_1_8056_diatracer.206352.206352.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nPNISVPKPFLGc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_sup_Slot2-37_1_8056_diatracer.206450.206450.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nNPSVSLVEERDFRPFSc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_sup_Slot2-37_1_8056_diatracer.208025.208025.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nAQPTSPFIAEFc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_sup_Slot2-37_1_8056_diatracer.208825.208825.2 [INFO:] Please specify modification and rerun PTMProphet ... ​ [INFO:] processed 39000/186751 spectrum_queries [ERROR:] Cannot initialize for sequence: nEDTLLTLTPC[160]c[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_sup_Slot2-37_1_8056_diatracer.210960.210960.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nC[160]C[160]NC[160]PM[147]DSPC[160]PLLLGc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_sup_Slot2-37_1_8056_diatracer.211746.211746.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nNEIDLESELKSEQVTEc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_sup_Slot2-37_1_8056_diatracer.212192.212192.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nYDEFIHKITLPGRDYc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_sup_Slot2-37_1_8056_diatracer.212237.212237.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nWPPLSLVGAVSRSPAPPPc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_sup_Slot2-37_1_8056_diatracer.212580.212580.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nSVPMPQNSDDDLFVSNDc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_sup_Slot2-37_1_8056_diatracer.212845.212845.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nLDMSLVSc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_sup_Slot2-37_1_8056_diatracer.213435.213435.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nGPAVWSGPGAAGGGLGGRc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_sup_Slot2-37_1_8056_diatracer.215570.215570.4 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nEKPRVLPPSLc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_sup_Slot2-37_1_8056_diatracer.215628.215628.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nSAPNEEGSc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_sup_Slot2-37_1_8056_diatracer.216376.216376.2 [INFO:] Please specify modification and rerun PTMProphet ... ​ [INFO:] processed 40000/186751 spectrum_queries [ERROR:] Cannot initialize for sequence: nVGQPTLLAc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_sup_Slot2-37_1_8056_diatracer.217587.217587.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nLAALGTIVGGTAIc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_sup_Slot2-37_1_8056_diatracer.218494.218494.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nINTDGKQc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_sup_Slot2-37_1_8056_diatracer.220547.220547.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nLGPRGGGTPLVDc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_sup_Slot2-37_1_8056_diatracer.221053.221053.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nHFHGTSLc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_sup_Slot2-37_1_8056_diatracer.221310.221310.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nPAGLFSLSc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_sup_Slot2-37_1_8056_diatracer.221804.221804.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nEHINLAGEPALc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_sup_Slot2-37_1_8056_diatracer.224115.224115.3 [INFO:] Please specify modification and rerun PTMProphet ... ​ [INFO:] processed 41000/186751 spectrum_queries [ERROR:] Cannot initialize for sequence: nRAAPGPLEDAAPPAPGAc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_sup_Slot2-37_1_8056_diatracer.225135.225135.4 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nIYLTADNLVLNLQD[202]ESFTc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_sup_Slot2-37_1_8056_diatracer.228956.228956.2 [INFO:] Please specify modification and rerun PTMProphet ... ​ [INFO:] processed 42000/186751 spectrum_queries [ERROR:] Cannot initialize for sequence: nPLATGPSSQSHQEKTTDSGLTEGIWc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_sup_Slot2-37_1_8056_diatracer.234253.234253.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nELLSTITDPSVIVMADc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_sup_Slot2-37_1_8056_diatracer.234594.234594.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nPPGGIVSLLNVFFDVQc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_sup_Slot2-37_1_8056_diatracer.234653.234653.2 [INFO:] Please specify modification and rerun PTMProphet ... ​ [INFO:] processed 43000/186751 spectrum_queries [ERROR:] Cannot initialize for sequence: nLLDLPAAASSEDIERSc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_sup_Slot2-37_1_8056_diatracer.240965.240965.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nTSGEWRGGARPGPC[160]GC[160]c[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_sup_Slot2-37_1_8056_diatracer.241621.241621.2 [INFO:] Please specify modification and rerun PTMProphet ... ​ [INFO:] processed 44000/186751 spectrum_queries [ERROR:] Cannot initialize for sequence: nAQTQSPHLHPHPHPSTSTPVPSSIc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_sup_Slot2-37_1_8056_diatracer.243308.243308.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nETLQELTSHC[160]DDMEc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_sup_Slot2-37_1_8056_diatracer.244700.244700.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nLGDSELPLTLWC[160]VC[160]c[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_sup_Slot2-37_1_8056_diatracer.245819.245819.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nFDDLDGTHALMVGLC[160]c[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_sup_Slot2-37_1_8056_diatracer.246075.246075.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nFDDLDGTHALMVGLC[160]c[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_sup_Slot2-37_1_8056_diatracer.247465.247465.2 [INFO:] Please specify modification and rerun PTMProphet ... ​ [INFO:] processed 45000/186751 spectrum_queries [ERROR:] Cannot initialize for sequence: nLNDILEDNDEGASVAGGc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_sup_Slot2-37_1_8056_diatracer.250963.250963.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: n[43]TFNSFEGSKTC[160]VPADc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_sup_Slot2-37_1_8056_diatracer.254167.254167.2 [INFO:] Please specify modification and rerun PTMProphet ... ​ [INFO:] processed 46000/186751 spectrum_queries [ERROR:] Cannot initialize for sequence: nLWTAVKGPTWTEVPEc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_sup_Slot2-37_1_8056_diatracer.257226.257226.2 [INFO:] Please specify modification and rerun PTMProphet ... ​ [INFO:] processed 47000/186751 spectrum_queries [ERROR:] Cannot initialize for sequence: nNILVSDM[147]EMNEQQEc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_sup_Slot2-37_1_8056_diatracer.260872.260872.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nVTLLDASEYE[172]C[160]EVEc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_sup_Slot2-37_1_8056_diatracer.263768.263768.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nRTSALLEDQDLc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_sup_Slot2-37_1_8056_diatracer.265715.265715.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nVYLFGC[160]LLLQTFMLLSc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_sup_Slot2-37_1_8056_diatracer.265955.265955.3 [INFO:] Please specify modification and rerun PTMProphet ... ​ [INFO:] processed 48000/186751 spectrum_queries [ERROR:] Cannot initialize for sequence: nGYAEVVVASENSVHKLLEc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_sup_Slot2-37_1_8056_diatracer.266901.266901.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nGYAEVVVASENSVHKLLEc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_sup_Slot2-37_1_8056_diatracer.269384.269384.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nNQMNNAMVQLGc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_sup_Slot2-37_1_8056_diatracer.270641.270641.2 [INFO:] Please specify modification and rerun PTMProphet ... ​ [INFO:] processed 49000/186751 spectrum_queries [ERROR:] Cannot initialize for sequence: nELKTILPLINFKVSSAKc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_sup_Slot2-37_1_8056_diatracer.271799.271799.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nLKEGDTM[147]M[147]GQQVANQLLc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_sup_Slot2-37_1_8056_diatracer.272955.272955.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nLLSAAPSQTSVYFC[160]ASSYc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_sup_Slot2-37_1_8056_diatracer.274374.274374.3 [INFO:] Please specify modification and rerun PTMProphet ... ​ [INFO:] processed 50000/186751 spectrum_queries [ERROR:] Cannot initialize for sequence: nGGLHPKPTSLVLSLLQSLSc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_sup_Slot2-37_1_8056_diatracer.276966.276966.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nAEGLM[147]LEKEVGALLLLVMc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_sup_Slot2-37_1_8056_diatracer.279427.279427.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nYLLGATVHHFPc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_sup_Slot2-37_1_8056_diatracer.280267.280267.2 [INFO:] Please specify modification and rerun PTMProphet ... ​ [INFO:] processed 51000/186751 spectrum_queries [ERROR:] Cannot initialize for sequence: nGRLWDPVFAVSc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_sup_Slot2-37_1_8056_diatracer.282175.282175.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nPGTPGGTGGPAPQYc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_sup_Slot2-37_1_8056_diatracer.282422.282422.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nELKQMYNRMNSVMQDc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_sup_Slot2-37_1_8056_diatracer.283458.283458.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nPQGQGGPGGHPC[160]PVAHQQGGc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_sup_Slot2-37_1_8056_diatracer.283551.283551.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nGNM[147]NVLDVENLc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_sup_Slot2-37_1_8056_diatracer.284008.284008.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nPSFSEIASALGDSTVDSKPc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_sup_Slot2-37_1_8056_diatracer.284586.284586.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nGRLWDPVFAVSc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_sup_Slot2-37_1_8056_diatracer.284665.284665.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nNSLDSSDSDSALc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_sup_Slot2-37_1_8056_diatracer.285117.285117.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nVPAAGLC[160]GSPALPc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_sup_Slot2-37_1_8056_diatracer.285340.285340.2 [INFO:] Please specify modification and rerun PTMProphet ... ​ [INFO:] processed 52000/186751 spectrum_queries [ERROR:] Cannot initialize for sequence: nGYAEVVVASENSVHKLLEc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_sup_Slot2-37_1_8056_diatracer.289257.289257.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nVAPGAERAPPPAPTARGSAGAc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_sup_Slot2-37_1_8056_diatracer.289344.289344.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nVC[160]AAVPAGWGGLGSPDAGGISc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_sup_Slot2-37_1_8056_diatracer.289388.289388.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nM[147]AENSVLTSTTGRTSLADc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_sup_Slot2-37_1_8056_diatracer.290707.290707.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nTLNDELEIIEGMKFDRc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_sup_Slot2-37_1_8056_diatracer.291050.291050.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nQLEAEDAEGLEAc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_sup_Slot2-37_1_8056_diatracer.291259.291259.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nGQGTAATAQMVNMc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_sup_Slot2-37_1_8056_diatracer.291589.291589.2 [INFO:] Please specify modification and rerun PTMProphet ... ​ [INFO:] processed 53000/186751 spectrum_queries [ERROR:] Cannot initialize for sequence: n[43]ATGLGEPVYGLSEDEPGSPc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_sup_Slot2-37_1_8056_diatracer.293076.293076.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nLEMEPQEWLSWLVPC[160]c[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_sup_Slot2-37_1_8056_diatracer.293153.293153.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nNSLDSSDSDSALc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_sup_Slot2-37_1_8056_diatracer.295056.295056.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nPKSFSSC[160]KQPGc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_sup_Slot2-37_1_8056_diatracer.295894.295894.2 [INFO:] Please specify modification and rerun PTMProphet ... ​ [INFO:] processed 54000/186751 spectrum_queries [ERROR:] Cannot initialize for sequence: nQTVFLYQPAALc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_sup_Slot2-37_1_8056_diatracer.297744.297744.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nGQIEDVFEQGKc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_sup_Slot2-37_1_8056_diatracer.299673.299673.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nLTGALTSQAQAILSPQSPKc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_sup_Slot2-37_1_8056_diatracer.299715.299715.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nGRLWDPVFAVSc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_sup_Slot2-37_1_8056_diatracer.302061.302061.2 [INFO:] Please specify modification and rerun PTMProphet ... ​ [INFO:] processed 55000/186751 spectrum_queries [ERROR:] Cannot initialize for sequence: nGGGPPPPGLLREDc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_sup_Slot2-37_1_8056_diatracer.305524.305524.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nHLTSMATSYFGKQFLRc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_sup_Slot2-37_1_8056_diatracer.306222.306222.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: n[43]AYQIVLELHFSHC[160]AAMGAALLMLc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_sup_Slot2-37_1_8056_diatracer.306273.306273.4 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nFALGGGLHHLARAVLAGRVc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_sup_Slot2-37_1_8056_diatracer.306996.306996.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nVQALSTDEGTSFc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_sup_Slot2-37_1_8056_diatracer.307641.307641.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nNPQQHLNAQPQVTMQQc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_sup_Slot2-37_1_8056_diatracer.307809.307809.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nNNPKFLAITTDC[160]LQLLc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_sup_Slot2-37_1_8056_diatracer.307845.307845.3 [INFO:] Please specify modification and rerun PTMProphet ... ​ [INFO:] processed 56000/186751 spectrum_queries [ERROR:] Cannot initialize for sequence: nLLGTAGTGEISNFc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_sup_Slot2-37_1_8056_diatracer.309164.309164.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nLATTC[160]SPFYGTGLSSPASSc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_sup_Slot2-37_1_8056_diatracer.310026.310026.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nNNPKFLAITTDC[160]LQLLc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_sup_Slot2-37_1_8056_diatracer.310336.310336.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nGGGPPPPGLLREDc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_sup_Slot2-37_1_8056_diatracer.310493.310493.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nGGLHPKPTSLVLSLLQSLSc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_sup_Slot2-37_1_8056_diatracer.311740.311740.3 [INFO:] Please specify modification and rerun PTMProphet ... ​ [INFO:] processed 57000/186751 spectrum_queries [ERROR:] Cannot initialize for sequence: nFQRVLGVLSQRLEPDRc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_sup_Slot2-37_1_8056_diatracer.316947.316947.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nYWSPAQSGLAGGPGPAGC[160]ASAc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_sup_Slot2-37_1_8056_diatracer.317083.317083.3 [INFO:] Please specify modification and rerun PTMProphet ... ​ [INFO:] processed 58000/186751 spectrum_queries [ERROR:] Cannot initialize for sequence: nGLPGPQGPTGPSGPc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_sup_Slot2-37_1_8056_diatracer.320292.320292.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nTDVGGGPAAGAASQGARSHSSSc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_sup_Slot2-37_1_8056_diatracer.320758.320758.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nGLPTPPPGASSASEc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_sup_Slot2-37_1_8056_diatracer.320908.320908.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nEPSHQISHSHQc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_sup_Slot2-37_1_8056_diatracer.321381.321381.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nAEGLM[147]LEKEVGALLLLVMc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_sup_Slot2-37_1_8056_diatracer.321638.321638.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nGGNELGLKEITYc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_sup_Slot2-37_1_8056_diatracer.321829.321829.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nPVTATSAAAALPTANAGTAc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_sup_Slot2-37_1_8056_diatracer.322457.322457.4 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nWLGLQGPSGGPGVc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_sup_Slot2-37_1_8056_diatracer.322472.322472.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nPYLFSLGYDSNMYLc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_sup_Slot2-37_1_8056_diatracer.323086.323086.4 [INFO:] Please specify modification and rerun PTMProphet ... ​ [INFO:] processed 59000/186751 spectrum_queries [ERROR:] Cannot initialize for sequence: nLLFHLAHKEKc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_sup_Slot2-37_1_8056_diatracer.324035.324035.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nESTAGSPPPc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_sup_Slot2-37_1_8056_diatracer.324051.324051.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nTESRSVAQAGM[147]Qc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_sup_Slot2-37_1_8056_diatracer.324869.324869.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nEATFRAVC[160]QRc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_sup_Slot2-37_1_8056_diatracer.325785.325785.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nIASNAGSIAc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_sup_Slot2-37_1_8056_diatracer.326153.326153.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nPGTEPGGRc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_sup_Slot2-37_1_8056_diatracer.326203.326203.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nLPC[160]PGAAVAAEGMc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_sup_Slot2-37_1_8056_diatracer.330158.330158.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nPAAKPAAAGAc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_sup_Slot2-37_1_8056_diatracer.330271.330271.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nMLRMIILM[147]PVc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_sup_Slot2-37_1_8056_diatracer.330605.330605.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nEKFSSALRNSNc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_sup_Slot2-37_1_8056_diatracer.330638.330638.3 [INFO:] Please specify modification and rerun PTMProphet ... ​ [INFO:] processed 60000/186751 spectrum_queries [ERROR:] Cannot initialize for sequence: nPEHSMGKc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_sup_Slot2-37_1_8056_diatracer.332054.332054.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nVQAPGLPGVSSQDAPASPc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_sup_Slot2-37_1_8056_diatracer.332868.332868.4 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nPVTATSAAAALPTANAGTAc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_sup_Slot2-37_1_8056_diatracer.333612.333612.4 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nLGAEDQGGVc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_sup_Slot2-37_1_8056_diatracer.336135.336135.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nIDGPQGSC[160]PWLc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_sup_Slot2-37_1_8056_diatracer.338748.338748.3 [INFO:] Please specify modification and rerun PTMProphet ... ​ [INFO:] processed 61000/186751 spectrum_queries [ERROR:] Cannot initialize for sequence: nTSLASLGLc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_sup_Slot2-37_1_8056_diatracer.339199.339199.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nHLIDGDC[160]QKHc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_sup_Slot2-37_1_8056_diatracer.339686.339686.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nNAVLGGQATc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_sup_Slot2-37_1_8056_diatracer.340541.340541.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nESVQGAAQDVAGVAAC[160]LPLAQSTc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_sup_Slot2-37_1_8056_diatracer.344235.344235.2 [INFO:] Please specify modification and rerun PTMProphet ... ​ [INFO:] processed 62000/186751 spectrum_queries [ERROR:] Cannot initialize for sequence: nANIRSYPPQNGVNEFETASTc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_sup_Slot2-37_1_8056_diatracer.347462.347462.2 [INFO:] Please specify modification and rerun PTMProphet ... ​ [INFO:] processed 63000/186751 spectrum_queries [ERROR:] Cannot initialize for sequence: nDMLAMPSTDEQPAEQAc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_sup_Slot2-37_1_8056_diatracer.352901.352901.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nALAELFTIEGASGGSKGAAc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_sup_Slot2-37_1_8056_diatracer.353283.353283.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nASLAFC[160]VGTDLGNVVGPAc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_sup_Slot2-37_1_8056_diatracer.355741.355741.2 [INFO:] Please specify modification and rerun PTMProphet ... ​ [INFO:] processed 64000/186751 spectrum_queries [ERROR:] Cannot initialize for sequence: nSYAWTQNWYC[160]VPSSc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_sup_Slot2-37_1_8056_diatracer.356917.356917.2 [INFO:] Please specify modification and rerun PTMProphet ... ​ [INFO:] processed 65000/186751 spectrum_queries [ERROR:] Cannot initialize for sequence: nALEEQTLSSVVTWFWc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_sup_Slot2-37_1_8056_diatracer.365422.365422.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nGLGTEAVLAMLSYETSLc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_sup_Slot2-37_1_8056_diatracer.367914.367914.2 [INFO:] Please specify modification and rerun PTMProphet ... ​ [INFO:] processed 66000/186751 spectrum_queries [ERROR:] Cannot initialize for sequence: nALEEQTLSSVVTWFWc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_sup_Slot2-37_1_8056_diatracer.370197.370197.2 [INFO:] Please specify modification and rerun PTMProphet ... ​ [INFO:] processed 67000/186751 spectrum_queries [ERROR:] Cannot initialize for sequence: nSPAEC[160]REEHSKTPEERc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_sup_Slot2-37_1_8056_diatracer.377990.377990.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nAAIEETLLLESSc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_sup_Slot2-37_1_8056_diatracer.378455.378455.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nSELHIENLNM[147]Ec[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_sup_Slot2-37_1_8056_diatracer.379378.379378.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nVARWLGVVAHTC[160]NPSTLGGc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_sup_Slot2-37_1_8056_diatracer.379736.379736.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nYPPSPAKMTQHc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_sup_Slot2-37_1_8056_diatracer.379988.379988.2 [INFO:] Please specify modification and rerun PTMProphet ... ​ [INFO:] processed 68000/186751 spectrum_queries [ERROR:] Cannot initialize for sequence: nGGGGGNGKAAATAAVAAc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_sup_Slot2-37_1_8056_diatracer.384066.384066.2 [INFO:] Please specify modification and rerun PTMProphet ... ​ [INFO:] processed 69000/186751 spectrum_queries [ERROR:] Cannot initialize for sequence: nQVEVDAQQC[160]MLc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_sup_Slot2-37_1_8056_diatracer.387826.387826.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nYEDLC[160]AFYHPGVNGPPLc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_sup_Slot2-37_1_8056_diatracer.389827.389827.3 [INFO:] Please specify modification and rerun PTMProphet ... ​ [INFO:] processed 70000/186751 spectrum_queries [ERROR:] Cannot initialize for sequence: nEGAGSANPGAAAAVALAAALAPSAc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_sup_Slot2-37_1_8056_diatracer.391012.391012.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nIMHGVAPC[160]SGGSQc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_sup_Slot2-37_1_8056_diatracer.391805.391805.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nSPAEC[160]REEHSKTPEERc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_sup_Slot2-37_1_8056_diatracer.394609.394609.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nQQQQHRLENLHGAMYTc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_sup_Slot2-37_1_8056_diatracer.395100.395100.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nLLNNGDKWEAEIAANIQADYLYRc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_sup_Slot2-37_1_8056_diatracer.395840.395840.4 [INFO:] Please specify modification and rerun PTMProphet ... ​ [INFO:] processed 71000/186751 spectrum_queries [ERROR:] Cannot initialize for sequence: nTFSQEAC[160]PTNFc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_sup_Slot2-37_1_8056_diatracer.396159.396159.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nIVSVGDDQEIHIYDC[160]PIc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_sup_Slot2-37_1_8056_diatracer.398891.398891.3 [INFO:] Please specify modification and rerun PTMProphet ... ​ [INFO:] processed 72000/186751 spectrum_queries [ERROR:] Cannot initialize for sequence: nDTIWSSLGM[147]LLC[160]PGLGESc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_sup_Slot2-37_1_8056_diatracer.401900.401900.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nPDPHAC[160]DGAGDGGPESGSPAEc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_sup_Slot2-37_1_8056_diatracer.403751.403751.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nSWGSWC[160]PSVGDRSFIC[160]FNALSPPc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_sup_Slot2-37_1_8056_diatracer.404055.404055.4 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nLPLISVALVQGWc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_sup_Slot2-37_1_8056_diatracer.405534.405534.2 [INFO:] Please specify modification and rerun PTMProphet ... ​ [INFO:] processed 73000/186751 spectrum_queries [ERROR:] Cannot initialize for sequence: nYEDLC[160]AFYHPGVNGPPLc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_sup_Slot2-37_1_8056_diatracer.408801.408801.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nDGLVTPEEFM[147]NYYAGVSAc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_sup_Slot2-37_1_8056_diatracer.409772.409772.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nQLTLGAYKHETc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_sup_Slot2-37_1_8056_diatracer.410865.410865.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nIYC[160]HILDPTKc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_sup_Slot2-37_1_8056_diatracer.410888.410888.2 [INFO:] Please specify modification and rerun PTMProphet ... ​ [INFO:] processed 74000/186751 spectrum_queries [ERROR:] Cannot initialize for sequence: nEMAHLEGLMKDLNAITTAc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_sup_Slot2-37_1_8056_diatracer.411591.411591.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nALGEGAELGARGQSLPM[147]GLLc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_sup_Slot2-37_1_8056_diatracer.413826.413826.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nLIATLSAMEGEFc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_sup_Slot2-37_1_8056_diatracer.414109.414109.2 [INFO:] Please specify modification and rerun PTMProphet ... ​ [INFO:] processed 75000/186751 spectrum_queries [ERROR:] Cannot initialize for sequence: nRSGASILQAGC[160]UGc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_sup_Slot2-37_1_8056_diatracer.418884.418884.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nSPTQSQITVNGNSc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_sup_Slot2-37_1_8056_diatracer.419270.419270.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nYSNAVPAVQDMNKIGFDNc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_sup_Slot2-37_1_8056_diatracer.419404.419404.3 [INFO:] Please specify modification and rerun PTMProphet ... ​ [INFO:] processed 76000/186751 spectrum_queries [ERROR:] Cannot initialize for sequence: nTPSGLLGC[160]LIPC[160]LGSWTALDQTSLGc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_sup_Slot2-37_1_8056_diatracer.422912.422912.4 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nVPGPPEASGDEGDEEKLPEAc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_sup_Slot2-37_1_8056_diatracer.424086.424086.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nQMAAAMPSTTPRc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_sup_Slot2-37_1_8056_diatracer.427203.427203.2 [INFO:] Please specify modification and rerun PTMProphet ... ​ [INFO:] processed 77000/186751 spectrum_queries [ERROR:] Cannot initialize for sequence: nKSPVGNFVGSNVVc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_sup_Slot2-37_1_8056_diatracer.429463.429463.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nSLGPLGIGPLHGRc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_sup_Slot2-37_1_8056_diatracer.430570.430570.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nDHILEQFVLNTETLNWc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_sup_Slot2-37_1_8056_diatracer.430908.430908.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nC[160]GPALTGSAc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_sup_Slot2-37_1_8056_diatracer.432533.432533.2 [INFO:] Please specify modification and rerun PTMProphet ... ​ [INFO:] processed 78000/186751 spectrum_queries [ERROR:] Cannot initialize for sequence: nGTPLAVTPEMERc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_sup_Slot2-37_1_8056_diatracer.432797.432797.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nGRVGGDAAQEPKAc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_sup_Slot2-37_1_8056_diatracer.433315.433315.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nPEGVPRIDc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_sup_Slot2-37_1_8056_diatracer.434199.434199.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nQPVSM[147]QNGc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_sup_Slot2-37_1_8056_diatracer.435305.435305.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nLMNELVEGAEELc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_sup_Slot2-37_1_8056_diatracer.435504.435504.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nSGPSPSSKSGc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_sup_Slot2-37_1_8056_diatracer.435629.435629.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nAALAAEGDPc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_sup_Slot2-37_1_8056_diatracer.435975.435975.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nITKNC[160]VNc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_sup_Slot2-37_1_8056_diatracer.436880.436880.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nGIAGSEEAKc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_sup_Slot2-37_1_8056_diatracer.437419.437419.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nVC[160]FVAQTGVQWc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_sup_Slot2-37_1_8056_diatracer.437810.437810.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nLGSPKLMSc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_sup_Slot2-37_1_8056_diatracer.437935.437935.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nSAAIAAAM[147]SAc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_sup_Slot2-37_1_8056_diatracer.437947.437947.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nAINC[160]PEGKc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_sup_Slot2-37_1_8056_diatracer.438370.438370.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nAAPAGPVGPGAc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_sup_Slot2-37_1_8056_diatracer.438903.438903.2 [INFO:] Please specify modification and rerun PTMProphet ... ​ [INFO:] processed 79000/186751 spectrum_queries [ERROR:] Cannot initialize for sequence: nEGAGELEALc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_sup_Slot2-37_1_8056_diatracer.439540.439540.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nEGAEVAPGQc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_sup_Slot2-37_1_8056_diatracer.441329.441329.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nGPALPLLRc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_sup_Slot2-37_1_8056_diatracer.441923.441923.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nGPALPLLRc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_sup_Slot2-37_1_8056_diatracer.442122.442122.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nDFLKSHELPSHPPPSSc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_sup_Slot2-37_1_8056_diatracer.442215.442215.4 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nLLPVTTEGc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_sup_Slot2-37_1_8056_diatracer.443226.443226.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nLSGNNLHNASIPEc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_sup_Slot2-37_1_8056_diatracer.443739.443739.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nTLGIQIHFSVGSc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_sup_Slot2-37_1_8056_diatracer.443980.443980.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nELQNTAVAc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_sup_Slot2-37_1_8056_diatracer.444884.444884.2 [INFO:] Please specify modification and rerun PTMProphet ... ​ [INFO:] processed 80000/186751 spectrum_queries [ERROR:] Cannot initialize for sequence: nAGGAELVAGEc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_sup_Slot2-37_1_8056_diatracer.445587.445587.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nVLTSANILYDTSNILDc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_sup_Slot2-37_1_8056_diatracer.445861.445861.4 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nGPALPLLRc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_sup_Slot2-37_1_8056_diatracer.446080.446080.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nGPAPLSVTMAPNTGc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_sup_Slot2-37_1_8056_diatracer.448065.448065.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nESTAGSPPPc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_sup_Slot2-37_1_8056_diatracer.449907.449907.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nGPPQGPLPGAENIVc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_sup_Slot2-37_1_8056_diatracer.449967.449967.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nQGSSPPPPQSSQEc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_sup_Slot2-37_1_8056_diatracer.451594.451594.3 [INFO:] Please specify modification and rerun PTMProphet ... ​ [INFO:] processed 81000/186751 spectrum_queries [ERROR:] Cannot initialize for sequence: nQGLGVESGEc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_sup_Slot2-37_1_8056_diatracer.452315.452315.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nGVDVNNAVVc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_sup_Slot2-37_1_8056_diatracer.452657.452657.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nQAPSVSPGAc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_sup_Slot2-37_1_8056_diatracer.453106.453106.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nWLSGNMFc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_sup_Slot2-37_1_8056_diatracer.453171.453171.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nGASANQEKGc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_sup_Slot2-37_1_8056_diatracer.453362.453362.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nGVDVNNAVVc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_sup_Slot2-37_1_8056_diatracer.453984.453984.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nGHSGLQPRGFLSc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_sup_Slot2-37_1_8056_diatracer.454457.454457.3 [INFO:] Please specify modification and rerun PTMProphet ... ​ [INFO:] processed 82000/186751 spectrum_queries [ERROR:] Cannot initialize for sequence: nGLAAAALGALc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_sup_Slot2-37_1_8056_diatracer.460225.460225.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nPQAHSSASGc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_sup_Slot2-37_1_8056_diatracer.460639.460639.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nGGSYSQAASSDSAQGSD[158]VSLTAC[160]c[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_sup_Slot2-37_1_8056_diatracer.463916.463916.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nGGSYSQAASSDSAQGSD[158]VSLTAC[160]c[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_sup_Slot2-37_1_8056_diatracer.464117.464117.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nNNLSFIETSALDSTNVE[172]EAFc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_sup_Slot2-37_1_8056_diatracer.464940.464940.2 [INFO:] Please specify modification and rerun PTMProphet ... ​ [INFO:] processed 83000/186751 spectrum_queries [ERROR:] Cannot initialize for sequence: nNNLSFIETSALDSTNVE[172]EAFc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_sup_Slot2-37_1_8056_diatracer.465543.465543.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nNNLSFIETSALDSTNVE[172]EAFc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_sup_Slot2-37_1_8056_diatracer.466144.466144.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nNNLSFIETSALDSTNVE[172]EAFc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_sup_Slot2-37_1_8056_diatracer.466547.466547.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nGELGAGTASILSC[160]RPLKGEPGVGFEEPGENC[160]APc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_sup_Slot2-37_1_8056_diatracer.466781.466781.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nNHWPIDESSQM[147]SDLPc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_sup_Slot2-37_1_8056_diatracer.468368.468368.2 [INFO:] Please specify modification and rerun PTMProphet ... ​ [INFO:] processed 84000/186751 spectrum_queries [ERROR:] Cannot initialize for sequence: nILQDEDM[147]IELGSMHASc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_sup_Slot2-37_1_8056_diatracer.472230.472230.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nVEELYDSLLQAIAFYELAVFDSQPc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_sup_Slot2-37_1_8056_diatracer.472995.472995.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nAVHSSWQAPPSLNQPVSc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_sup_Slot2-37_1_8056_diatracer.473484.473484.2 [INFO:] Please specify modification and rerun PTMProphet ... ​ [INFO:] processed 85000/186751 spectrum_queries [ERROR:] Cannot initialize for sequence: nILQDEDM[147]IELGSMHASc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_sup_Slot2-37_1_8056_diatracer.477616.477616.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nGVGGAGFVAVRYDNSQEPc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_sup_Slot2-37_1_8056_diatracer.481369.481369.2 [INFO:] Please specify modification and rerun PTMProphet ... ​ [INFO:] processed 86000/186751 spectrum_queries [ERROR:] Cannot initialize for sequence: nLAQDPFPLYPGEVLEKc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_sup_Slot2-37_1_8056_diatracer.483595.483595.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nESSEEEYDSGVEEEGWPRQADAANSc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_sup_Slot2-37_1_8056_diatracer.483868.483868.3 [INFO:] Please specify modification and rerun PTMProphet ... ​ [INFO:] processed 87000/186751 spectrum_queries [ERROR:] Cannot initialize for sequence: nLINPDGSESGC[160]GGWGHMMGDEGSALAHc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_sup_Slot2-37_1_8056_diatracer.490477.490477.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nMSPGYLEVFADEc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_sup_Slot2-37_1_8056_diatracer.492025.492025.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nPTGYVTFTVSGYPTEVSHTc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_sup_Slot2-37_1_8056_diatracer.492840.492840.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nDNELMMNWHLAc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_sup_Slot2-37_1_8056_diatracer.493009.493009.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nELPSPAAQPQSVASc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_sup_Slot2-37_1_8056_diatracer.493350.493350.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nDANNTDAENQAKEPVSNQDc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_sup_Slot2-37_1_8056_diatracer.493443.493443.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nPVNSAALSPNYDHVLPFGLc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_sup_Slot2-37_1_8056_diatracer.494294.494294.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nPNSVSTAAGKEVSDc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_sup_Slot2-37_1_8056_diatracer.494550.494550.2 [INFO:] Please specify modification and rerun PTMProphet ... ​ [INFO:] processed 88000/186751 spectrum_queries [ERROR:] Cannot initialize for sequence: nLVC[160]VGPMFLEGSPGEGTVLSc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_sup_Slot2-37_1_8056_diatracer.496452.496452.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nDETRTLEFRRc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_sup_Slot2-37_1_8056_diatracer.499348.499348.2 [INFO:] Please specify modification and rerun PTMProphet ... ​ [INFO:] processed 89000/186751 spectrum_queries [ERROR:] Cannot initialize for sequence: nGFLAYYQAVGLWc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_sup_Slot2-37_1_8056_diatracer.499932.499932.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nVGSHPEGGASWLSTAANFLSRSFYWc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_sup_Slot2-37_1_8056_diatracer.501329.501329.4 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nQASQVFTAEKIPc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_sup_Slot2-37_1_8056_diatracer.503279.503279.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nSGGLPATAGGGARLSVc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_sup_Slot2-37_1_8056_diatracer.503752.503752.2 [INFO:] Please specify modification and rerun PTMProphet ... ​ [INFO:] processed 90000/186751 spectrum_queries [ERROR:] Cannot initialize for sequence: nENLDSHLPPSQNTSELNTAc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_sup_Slot2-37_1_8056_diatracer.505786.505786.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nLC[160]ELLLNLDTKc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_sup_Slot2-37_1_8056_diatracer.506262.506262.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nEALSGVTSHGLSC[160]c[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_sup_Slot2-37_1_8056_diatracer.507839.507839.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nGPNHAVSTAC[160]TTGAHAVGDSFc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_sup_Slot2-37_1_8056_diatracer.508900.508900.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nKEGVYDVPKSQPc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_sup_Slot2-37_1_8056_diatracer.509078.509078.2 [INFO:] Please specify modification and rerun PTMProphet ... ​ [INFO:] processed 91000/186751 spectrum_queries [ERROR:] Cannot initialize for sequence: nSELHIENLNMEc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_sup_Slot2-37_1_8056_diatracer.510466.510466.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nELPSPAAQPQSVASc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_sup_Slot2-37_1_8056_diatracer.511191.511191.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nDKAVEPDVDPRYVLSPDPGc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_sup_Slot2-37_1_8056_diatracer.511510.511510.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nAADRMTVAVADHLPSPC[160]SRc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_sup_Slot2-37_1_8056_diatracer.514321.514321.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nITDNEARMIDILSSELSHc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_sup_Slot2-37_1_8056_diatracer.515225.515225.3 [INFO:] Please specify modification and rerun PTMProphet ... ​ [INFO:] processed 92000/186751 spectrum_queries [ERROR:] Cannot initialize for sequence: nILDPFIIRTAAYc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_sup_Slot2-37_1_8056_diatracer.516065.516065.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nFSEELGAMDTSAAc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_sup_Slot2-37_1_8056_diatracer.517418.517418.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nEAGGVTTNRREDEEEDEGNc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_sup_Slot2-37_1_8056_diatracer.518032.518032.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nLLPGEPFPDSDPAc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_sup_Slot2-37_1_8056_diatracer.518461.518461.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nGVQVPVSQPPTPTc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_sup_Slot2-37_1_8056_diatracer.518745.518745.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nEALSGVTSHGLSC[160]c[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_sup_Slot2-37_1_8056_diatracer.518990.518990.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nITDNEARMIDILSSELSHc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_sup_Slot2-37_1_8056_diatracer.519688.519688.3 [INFO:] Please specify modification and rerun PTMProphet ... ​ [INFO:] processed 93000/186751 spectrum_queries [ERROR:] Cannot initialize for sequence: nLEAVRRMLGISPc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_sup_Slot2-37_1_8056_diatracer.522176.522176.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nELGAPVRNAPLNTDLELFPc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_sup_Slot2-37_1_8056_diatracer.522758.522758.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nLFAGADAVVHEVPAc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_sup_Slot2-37_1_8056_diatracer.522825.522825.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nVGSHPEGGASWLSTAANFLSRSFYWc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_sup_Slot2-37_1_8056_diatracer.523639.523639.4 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nQKPSGPVLQLALC[160]FVVLFQLPLVPKc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_sup_Slot2-37_1_8056_diatracer.524237.524237.4 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nNPEDPTEVPGGFLSDLNLHc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_sup_Slot2-37_1_8056_diatracer.524467.524467.3 [INFO:] Please specify modification and rerun PTMProphet ... ​ [INFO:] processed 94000/186751 spectrum_queries [ERROR:] Cannot initialize for sequence: nHYAGDVVSSWNLLSYPQHc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_sup_Slot2-37_1_8056_diatracer.528392.528392.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nAWTEQLPKASGPPc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_sup_Slot2-37_1_8056_diatracer.529116.529116.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nEALSGVTSHGLSC[160]c[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_sup_Slot2-37_1_8056_diatracer.530147.530147.2 [INFO:] Please specify modification and rerun PTMProphet ... ​ [INFO:] processed 95000/186751 spectrum_queries [ERROR:] Cannot initialize for sequence: nESVTATPAAAAVC[160]HVPSPPEAc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_sup_Slot2-37_1_8056_diatracer.531533.531533.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nGPEGSVTGELGPGNKc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_sup_Slot2-37_1_8056_diatracer.534142.534142.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nGLVDSFGVLWEEc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_sup_Slot2-37_1_8056_diatracer.534340.534340.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nVLAQADHELHGAQLSLRPAc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_sup_Slot2-37_1_8056_diatracer.534780.534780.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nLC[160]ELLLNLDTKc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_sup_Slot2-37_1_8056_diatracer.535272.535272.2 [INFO:] Please specify modification and rerun PTMProphet ... ​ [INFO:] processed 96000/186751 spectrum_queries [ERROR:] Cannot initialize for sequence: nQSGLAGGGPPAGC[160]ASAc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_sup_Slot2-37_1_8056_diatracer.536591.536591.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nPLGDWSYAYM[147]Qc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_sup_Slot2-37_1_8056_diatracer.540328.540328.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nEALSGVTSHGLSC[160]c[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_sup_Slot2-37_1_8056_diatracer.541318.541318.2 [INFO:] Please specify modification and rerun PTMProphet ... ​ [INFO:] processed 97000/186751 spectrum_queries [ERROR:] Cannot initialize for sequence: nSLPQTGNTQVAQSc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_sup_Slot2-37_1_8056_diatracer.542186.542186.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nPLGDWSYAYM[147]Qc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_sup_Slot2-37_1_8056_diatracer.542563.542563.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nPPQTQSSGLc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_sup_Slot2-37_1_8056_diatracer.543563.543563.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nKIWLLISQNGGAIc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_sup_Slot2-37_1_8056_diatracer.543822.543822.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nQLFTVTLIVTRIKMAKc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_sup_Slot2-37_1_8056_diatracer.544310.544310.4 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nGVGAVAAAAAAAc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_sup_Slot2-37_1_8056_diatracer.544401.544401.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nIFLEGANGAPAHTVc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_sup_Slot2-37_1_8056_diatracer.544738.544738.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nVSC[160]LAASIPc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_sup_Slot2-37_1_8056_diatracer.545505.545505.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nSLPQAKGPGLQEPPc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_sup_Slot2-37_1_8056_diatracer.545929.545929.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nSSLGPTGASHc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_sup_Slot2-37_1_8056_diatracer.546891.546891.2 [INFO:] Please specify modification and rerun PTMProphet ... ​ [INFO:] processed 98000/186751 spectrum_queries [ERROR:] Cannot initialize for sequence: nQVTSSGVSHc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_sup_Slot2-37_1_8056_diatracer.548285.548285.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nC[160]LFLGELKDDINc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_sup_Slot2-37_1_8056_diatracer.549628.549628.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nELEAAPVQVYDKc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_sup_Slot2-37_1_8056_diatracer.550801.550801.3 [INFO:] Please specify modification and rerun PTMProphet ... ​ [INFO:] processed 99000/186751 spectrum_queries [ERROR:] Cannot initialize for sequence: nPISMVGAEQc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_sup_Slot2-37_1_8056_diatracer.556163.556163.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nVHVQMEPVc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_sup_Slot2-37_1_8056_diatracer.556471.556471.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nGTAAAAATGTAAc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_sup_Slot2-37_1_8056_diatracer.557853.557853.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nADSQLQPHGGDLTc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_sup_Slot2-37_1_8056_diatracer.558894.558894.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nPPAGALGTPAAc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_sup_Slot2-37_1_8056_diatracer.559174.559174.2 [INFO:] Please specify modification and rerun PTMProphet ... ​ [INFO:] processed 100000/186751 spectrum_queries [ERROR:] Cannot initialize for sequence: nPIQPDTDQHLQVc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_sup_Slot2-37_1_8056_diatracer.561599.561599.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nMTDTVFSNSSNRc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_sup_Slot2-37_1_8056_diatracer.562493.562493.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nC[160]LGPLVSKc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_sup_Slot2-37_1_8056_diatracer.562611.562611.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nSEIDLNSVAANKPc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_sup_Slot2-37_1_8056_diatracer.562690.562690.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nSLSFGGLNVc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_sup_Slot2-37_1_8056_diatracer.563433.563433.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nQANGEDIDVTSNDc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_sup_Slot2-37_1_8056_diatracer.564778.564778.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: n[43]SEVLPADSGc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_sup_Slot2-37_1_8056_diatracer.565993.565993.2 [INFO:] Please specify modification and rerun PTMProphet ... ​ [INFO:] processed 101000/186751 spectrum_queries [ERROR:] Cannot initialize for sequence: nDDPVLETSc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_sup_Slot2-37_1_8056_diatracer.569554.569554.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nSEIDLNSVAANKPc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_sup_Slot2-37_1_8056_diatracer.569558.569558.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nPQPSGPAPSSc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_sup_Slot2-37_1_8056_diatracer.569651.569651.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nC[160]LFLGELKDDINc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_sup_Slot2-37_1_8056_diatracer.570231.570231.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nQVTSSGVSHc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_sup_Slot2-37_1_8056_diatracer.570625.570625.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nLDGASWGVSc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_sup_Slot2-37_1_8056_diatracer.571592.571592.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nM[147]AGPTDPTSc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_sup_Slot2-37_1_8056_diatracer.571626.571626.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nAVAEDPVAAAc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_sup_Slot2-37_1_8056_diatracer.572673.572673.2 [INFO:] Please specify modification and rerun PTMProphet ... ​ [INFO:] processed 102000/186751 spectrum_queries [ERROR:] Cannot initialize for sequence: nIVPVEAGPPc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_sup_Slot2-37_1_8056_diatracer.572963.572963.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nVSFPTPTLAPSPFc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_sup_Slot2-37_1_8056_diatracer.573265.573265.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nC[160]LFLGELKDDINc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_sup_Slot2-37_1_8056_diatracer.573671.573671.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nSQAEPRAAAc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_sup_Slot2-37_1_8056_diatracer.577538.577538.2 [INFO:] Please specify modification and rerun PTMProphet ... ​ [INFO:] processed 103000/186751 spectrum_queries [ERROR:] Cannot initialize for sequence: nVYNGLQGYc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_sup_Slot2-37_1_8056_diatracer.581226.581226.2 [INFO:] Please specify modification and rerun PTMProphet ... ​ [INFO:] processed 104000/186751 spectrum_queries [ERROR:] Cannot initialize for sequence: nLFEDSEEVDVDGNADDDc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_sup_Slot2-37_1_8056_diatracer.588162.588162.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nLQQVLQM[147]ESHIQSTSDRIQFNDLQSLLC[160]ATLQc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_sup_Slot2-37_1_8056_diatracer.589228.589228.4 [INFO:] Please specify modification and rerun PTMProphet ... ​ [INFO:] processed 105000/186751 spectrum_queries [ERROR:] Cannot initialize for sequence: nKEISEVAFVHEGVAPLEc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_sup_Slot2-37_1_8056_diatracer.592606.592606.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nAQTKDMGAQAPWVPEAGPc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_sup_Slot2-37_1_8056_diatracer.593422.593422.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nDAPMQAGVPWLLLTPSGSc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_sup_Slot2-37_1_8056_diatracer.596106.596106.2 [INFO:] Please specify modification and rerun PTMProphet ... ​ [INFO:] processed 107000/186751 spectrum_queries [ERROR:] Cannot initialize for sequence: nNVSEIIATIMETLKM[147]Kc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_sup_Slot2-37_1_8056_diatracer.604006.604006.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nMSTPTDPGAc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_sup_Slot2-37_1_8056_diatracer.605953.605953.1 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nKETLQELTSHC[160]DDMEc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_sup_Slot2-37_1_8056_diatracer.606885.606885.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nVTM[147]TLC[160]LGGTVYSLYSLGWASFPRNc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_sup_Slot2-37_1_8056_diatracer.607175.607175.3 [INFO:] Please specify modification and rerun PTMProphet ... ​ [INFO:] processed 108000/186751 spectrum_queries [ERROR:] Cannot initialize for sequence: nEQEELALFVAARc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_sup_Slot2-37_1_8056_diatracer.613235.613235.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nNTTMLSKTSTSYVc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_sup_Slot2-37_1_8056_diatracer.613851.613851.2 [INFO:] Please specify modification and rerun PTMProphet ... ​ [INFO:] processed 109000/186751 spectrum_queries [ERROR:] Cannot initialize for sequence: nHSLSPSTSAAPNAISGSPEPETAEVVVTAc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_sup_Slot2-37_1_8056_diatracer.614510.614510.4 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nLLSSAFDEVYPALPSDVQTAc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_sup_Slot2-37_1_8056_diatracer.614576.614576.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nPALPDPALPLQMLc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_sup_Slot2-37_1_8056_diatracer.617286.617286.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nVTRGSVDGLGLNVGSc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_sup_Slot2-37_1_8056_diatracer.617741.617741.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nIAFC[160]QGFDKQVDc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_sup_Slot2-37_1_8056_diatracer.619572.619572.2 [INFO:] Please specify modification and rerun PTMProphet ... ​ [INFO:] processed 110000/186751 spectrum_queries [ERROR:] Cannot initialize for sequence: nSPASDTYIVFGE[172]Ac[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_sup_Slot2-37_1_8056_diatracer.620259.620259.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nTEVSTVSSTQVGPNc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_sup_Slot2-37_1_8056_diatracer.620730.620730.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nLLEAHEEQNVDSc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_sup_Slot2-37_1_8056_diatracer.621696.621696.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nYQLFFFSFLWc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_sup_Slot2-37_1_8056_diatracer.622319.622319.2 [INFO:] Please specify modification and rerun PTMProphet ... ​ [INFO:] processed 111000/186751 spectrum_queries [ERROR:] Cannot initialize for sequence: nGALSAMSRDNELMMNWHLAc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_sup_Slot2-37_1_8056_diatracer.625522.625522.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nC[160]HVQGC[160]QVQSEIYGHLTVc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_sup_Slot2-37_1_8056_diatracer.627934.627934.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nEFIHLNINEFIHLTM[147]NIc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_sup_Slot2-37_1_8056_diatracer.629868.629868.3 [INFO:] Please specify modification and rerun PTMProphet ... ​ [INFO:] processed 112000/186751 spectrum_queries [ERROR:] Cannot initialize for sequence: nLELSWGEDPLSGVc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_sup_Slot2-37_1_8056_diatracer.631083.631083.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nPSNEEATAAANGNGSc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_sup_Slot2-37_1_8056_diatracer.632145.632145.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: n[43]VASAGSLFGGMVLKc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_sup_Slot2-37_1_8056_diatracer.633762.633762.2 [INFO:] Please specify modification and rerun PTMProphet ... ​ [INFO:] processed 113000/186751 spectrum_queries [ERROR:] Cannot initialize for sequence: nGGIDHINALDENLc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_sup_Slot2-37_1_8056_diatracer.636143.636143.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nASSAFNAVGSEVDTMKSSDTRc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_sup_Slot2-37_1_8056_diatracer.638133.638133.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nQEQSPELPVDPLAAPSAM[147]AAAAc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_sup_Slot2-37_1_8056_diatracer.638667.638667.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nQSGDDVRDFEWDPSLTEVAc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_sup_Slot2-37_1_8056_diatracer.640504.640504.3 [INFO:] Please specify modification and rerun PTMProphet ... ​ [INFO:] processed 114000/186751 spectrum_queries [ERROR:] Cannot initialize for sequence: nTHHSGEC[160]FQLPEGLSAQGPGc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_sup_Slot2-37_1_8056_diatracer.641793.641793.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nNLDKLSSSLYLEKPVSAVAPc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_sup_Slot2-37_1_8056_diatracer.643371.643371.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nVTAIWSGWTHLVc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_sup_Slot2-37_1_8056_diatracer.643731.643731.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nSPASDTYIVFGE[172]Ac[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_sup_Slot2-37_1_8056_diatracer.644830.644830.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nQEAHPTEEPHNQc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_sup_Slot2-37_1_8056_diatracer.645981.645981.2 [INFO:] Please specify modification and rerun PTMProphet ... ​ [INFO:] processed 115000/186751 spectrum_queries [ERROR:] Cannot initialize for sequence: nQALSPKVKAPSALGc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_sup_Slot2-37_1_8056_diatracer.647668.647668.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nLLEAHEEQNVDSc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_sup_Slot2-37_1_8056_diatracer.648333.648333.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nTHHSGEC[160]FQLPEGLSAQGPGc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_sup_Slot2-37_1_8056_diatracer.649999.649999.3 [INFO:] Please specify modification and rerun PTMProphet ... ​ [INFO:] processed 116000/186751 spectrum_queries [ERROR:] Cannot initialize for sequence: nEWLIAGFGLFGTVc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_sup_Slot2-37_1_8056_diatracer.653847.653847.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nAYQHGGVTGLSQYc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_sup_Slot2-37_1_8056_diatracer.654498.654498.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nGGDRPTQLLPQSGNGSQARAEc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_sup_Slot2-37_1_8056_diatracer.655188.655188.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nKLELDVPAAc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_sup_Slot2-37_1_8056_diatracer.655730.655730.2 [INFO:] Please specify modification and rerun PTMProphet ... ​ [INFO:] processed 117000/186751 spectrum_queries [ERROR:] Cannot initialize for sequence: nVGSVLE[172]EVAAAAEGGVc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_sup_Slot2-37_1_8056_diatracer.656703.656703.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nKLELDVPAAc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_sup_Slot2-37_1_8056_diatracer.657792.657792.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nLLPPYHSLINNFc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_sup_Slot2-37_1_8056_diatracer.658337.658337.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nLAILENTVVc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_sup_Slot2-37_1_8056_diatracer.660599.660599.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nSWTGGPGTEPc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_sup_Slot2-37_1_8056_diatracer.661105.661105.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nDSLADDEGKc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_sup_Slot2-37_1_8056_diatracer.661655.661655.2 [INFO:] Please specify modification and rerun PTMProphet ... ​ [INFO:] processed 118000/186751 spectrum_queries [ERROR:] Cannot initialize for sequence: nLAILENTVVc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_sup_Slot2-37_1_8056_diatracer.662346.662346.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nVSNQRTDIGAQIKc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_sup_Slot2-37_1_8056_diatracer.662396.662396.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nFTDKRIGYLGAMLc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_sup_Slot2-37_1_8056_diatracer.662702.662702.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nAPAPPQSGSC[160]c[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_sup_Slot2-37_1_8056_diatracer.664527.664527.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nLC[160]PADPDWIAFIHSNDIc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_sup_Slot2-37_1_8056_diatracer.664545.664545.4 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nKLC[160]MMPLDSEVHc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_sup_Slot2-37_1_8056_diatracer.665326.665326.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nTSGNSYTQIc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_sup_Slot2-37_1_8056_diatracer.666482.666482.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nDPTRQDAALEGSTEc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_sup_Slot2-37_1_8056_diatracer.666796.666796.3 [INFO:] Please specify modification and rerun PTMProphet ... ​ [INFO:] processed 119000/186751 spectrum_queries [ERROR:] Cannot initialize for sequence: nNM[147]VPQQALVIRNGc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_sup_Slot2-37_1_8056_diatracer.670147.670147.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nGVLALNPLLc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_sup_Slot2-37_1_8056_diatracer.670154.670154.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nLHGEELRAGSDTRc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_sup_Slot2-37_1_8056_diatracer.670795.670795.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nHILDGTAEEc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_sup_Slot2-37_1_8056_diatracer.671090.671090.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nYQSLAMAANHGPPPGc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_sup_Slot2-37_1_8056_diatracer.671413.671413.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nVAAGVAGAAGGGGSIGASKc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_sup_Slot2-37_1_8056_diatracer.672103.672103.3 [INFO:] Please specify modification and rerun PTMProphet ... ​ [INFO:] processed 120000/186751 spectrum_queries [ERROR:] Cannot initialize for sequence: nATLTASPLGASc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_sup_Slot2-37_1_8056_diatracer.675507.675507.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nTKTVTLEYc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_sup_Slot2-37_1_8056_diatracer.676289.676289.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nDEAGKFFGTc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_sup_Slot2-37_1_8056_diatracer.676741.676741.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nYKEETIEKM[147]QEc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_sup_Slot2-37_1_8056_diatracer.676897.676897.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nM[147]VAPAEDDVTQSEc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_sup_Slot2-37_1_8056_diatracer.678075.678075.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nNASFYANSSTLYYc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_sup_Slot2-37_1_8056_diatracer.679330.679330.3 [INFO:] Please specify modification and rerun PTMProphet ... ​ [INFO:] processed 121000/186751 spectrum_queries [ERROR:] Cannot initialize for sequence: nLHLC[160]EEKAKSYSc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_sup_Slot2-37_1_8056_diatracer.680519.680519.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nLAILENTVVc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_sup_Slot2-37_1_8056_diatracer.681117.681117.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nYVSDLELSAc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_sup_Slot2-37_1_8056_diatracer.681973.681973.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nLVDPQEMLRLLGHc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_sup_Slot2-37_1_8056_diatracer.681989.681989.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nQAPDLYQRLVHLIPDKc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_sup_Slot2-37_1_8056_diatracer.682442.682442.4 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nDITGTLSNPc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_sup_Slot2-37_1_8056_diatracer.682541.682541.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nNASFYANSSTLYYc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_sup_Slot2-37_1_8056_diatracer.683434.683434.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nLWDRAYVc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_sup_Slot2-37_1_8056_diatracer.684818.684818.2 [INFO:] Please specify modification and rerun PTMProphet ... ​ [INFO:] processed 122000/186751 spectrum_queries [ERROR:] Cannot initialize for sequence: nSGLAWGAPRc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_sup_Slot2-37_1_8056_diatracer.686537.686537.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nQEAHPTEEPHNQc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_sup_Slot2-37_1_8056_diatracer.686587.686587.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nPALPEELSAc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_sup_Slot2-37_1_8056_diatracer.687099.687099.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nPVAGLDIPPASPWVc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_sup_Slot2-37_1_8056_diatracer.688833.688833.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nERQIESYc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_sup_Slot2-37_1_8056_diatracer.688896.688896.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nLHQDAPDLAc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_sup_Slot2-37_1_8056_diatracer.689270.689270.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nQDIDLGAGRc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_sup_Slot2-37_1_8056_diatracer.689913.689913.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nASQEGPPGPEc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_sup_Slot2-37_1_8056_diatracer.690992.690992.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nLAILENTVVc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_sup_Slot2-37_1_8056_diatracer.691102.691102.2 [INFO:] Please specify modification and rerun PTMProphet ... ​ [INFO:] processed 123000/186751 spectrum_queries [ERROR:] Cannot initialize for sequence: nHILDGTAEEc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_sup_Slot2-37_1_8056_diatracer.691617.691617.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nGEAQGSAASAAVAGTAAAc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_sup_Slot2-37_1_8056_diatracer.692006.692006.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nNALSPSTIWc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_sup_Slot2-37_1_8056_diatracer.694011.694011.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nPSLAAGPGAAAAc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_sup_Slot2-37_1_8056_diatracer.694727.694727.2 [INFO:] Please specify modification and rerun PTMProphet ... ​ [INFO:] processed 124000/186751 spectrum_queries [ERROR:] Cannot initialize for sequence: nIPSESSVYAGETSAPc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_sup_Slot2-37_1_8056_diatracer.697758.697758.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nLHQDAPDLAc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_sup_Slot2-37_1_8056_diatracer.699541.699541.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nHILDGTAEEc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_sup_Slot2-37_1_8056_diatracer.699853.699853.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nLSNLNGSAESc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_sup_Slot2-37_1_8056_diatracer.702215.702215.2 [INFO:] Please specify modification and rerun PTMProphet ... ​ [INFO:] processed 126000/186751 spectrum_queries [ERROR:] Cannot initialize for sequence: nSQADGVILFAGC[160]VEC[160]VE[172]M[147]QKEQAAFSc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_sup_Slot2-37_1_8056_diatracer.713565.713565.3 [INFO:] Please specify modification and rerun PTMProphet ... ​ [INFO:] processed 127000/186751 spectrum_queries [ERROR:] Cannot initialize for sequence: nQAADLC[160]HWEELSFEIAVDRFQLPGc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_sup_Slot2-37_1_8056_diatracer.718170.718170.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nGSPQDLKLSGPGATDSPPALc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_sup_Slot2-37_1_8056_diatracer.720906.720906.2 [INFO:] Please specify modification and rerun PTMProphet ... ​ [INFO:] processed 128000/186751 spectrum_queries [ERROR:] Cannot initialize for sequence: nSVQGAIMPDQLLASc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_sup_Slot2-37_1_8056_diatracer.726033.726033.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nAMLQFRGGASGLDLc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_sup_Slot2-37_1_8056_diatracer.726221.726221.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nTAQQNGDTPEAQGLDITTYGEc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_sup_Slot2-37_1_8056_diatracer.727298.727298.3 [INFO:] Please specify modification and rerun PTMProphet ... ​ [INFO:] processed 129000/186751 spectrum_queries [ERROR:] Cannot initialize for sequence: nIPYEEGPGPGPLAEc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_sup_Slot2-37_1_8056_diatracer.733287.733287.2 [INFO:] Please specify modification and rerun PTMProphet ... ​ [INFO:] processed 130000/186751 spectrum_queries [ERROR:] Cannot initialize for sequence: nDYVVQVIVSQPVQNPTPVENc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_sup_Slot2-37_1_8056_diatracer.739123.739123.3 [INFO:] Please specify modification and rerun PTMProphet ... ​ [INFO:] processed 131000/186751 spectrum_queries [ERROR:] Cannot initialize for sequence: n[43]MTKATGFTFGGPTAGTGGFNFGSc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_sup_Slot2-37_1_8056_diatracer.739839.739839.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nELIDEAGDEWQDc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_sup_Slot2-37_1_8056_diatracer.742849.742849.2 [INFO:] Please specify modification and rerun PTMProphet ... ​ [INFO:] processed 132000/186751 spectrum_queries [ERROR:] Cannot initialize for sequence: nVEQNTFVEVDVVC[160]AVLTSVDC[160]DMSPAPc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_sup_Slot2-37_1_8056_diatracer.745819.745819.4 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nC[160]SVRLSVPVSEGYc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_sup_Slot2-37_1_8056_diatracer.746284.746284.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nIQPQETLELGHPIc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_sup_Slot2-37_1_8056_diatracer.747074.747074.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nHWLSDNRVLQGNQRVANESc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_sup_Slot2-37_1_8056_diatracer.748745.748745.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nLADGQLQQAQIWGAc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_sup_Slot2-37_1_8056_diatracer.749801.749801.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nAAAVAEAEWRAALESESSGRRc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_sup_Slot2-37_1_8056_diatracer.750505.750505.3 [INFO:] Please specify modification and rerun PTMProphet ... ​ [INFO:] processed 133000/186751 spectrum_queries [ERROR:] Cannot initialize for sequence: nETLNSIWNVEDHINPKC[160]Ec[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_sup_Slot2-37_1_8056_diatracer.752054.752054.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nIFNSILM[147]FKAAEKNSHNELc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_sup_Slot2-37_1_8056_diatracer.754615.754615.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nFHGSC[160]C[160]ASGFLGFFLM[147]FSTc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_sup_Slot2-37_1_8056_diatracer.754701.754701.3 [INFO:] Please specify modification and rerun PTMProphet ... ​ [INFO:] processed 134000/186751 spectrum_queries [ERROR:] Cannot initialize for sequence: n[43]ESPISRHSIFC[160]Sc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_sup_Slot2-37_1_8056_diatracer.756178.756178.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nPETLVRPPPAPC[160]Lc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_sup_Slot2-37_1_8056_diatracer.759284.759284.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nPLHAPAGFSAGEVHTTPLGNLGAc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_sup_Slot2-37_1_8056_diatracer.760026.760026.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nGVGSNAATSQMAGGYAc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_sup_Slot2-37_1_8056_diatracer.760774.760774.2 [INFO:] Please specify modification and rerun PTMProphet ... ​ [INFO:] processed 135000/186751 spectrum_queries [ERROR:] Cannot initialize for sequence: nHWLSDNRVLQGNQRVANESc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_sup_Slot2-37_1_8056_diatracer.762174.762174.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nLTDTNTSLESTSAVc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_sup_Slot2-37_1_8056_diatracer.764778.764778.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nEVC[160]RSSKLSGEDSc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_sup_Slot2-37_1_8056_diatracer.765195.765195.2 [INFO:] Please specify modification and rerun PTMProphet ... ​ [INFO:] processed 136000/186751 spectrum_queries [ERROR:] Cannot initialize for sequence: nHQDEINTDEWKc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_sup_Slot2-37_1_8056_diatracer.767264.767264.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nYPIEHGIVTNWDc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_sup_Slot2-37_1_8056_diatracer.768818.768818.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nKM[147]LPSSIGLPSITEc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_sup_Slot2-37_1_8056_diatracer.769343.769343.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nYQAAAPSVSNc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_sup_Slot2-37_1_8056_diatracer.769612.769612.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nPAPAFKAPEPc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_sup_Slot2-37_1_8056_diatracer.770468.770468.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nLPGAMGQAGLVGPGPGGFc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_sup_Slot2-37_1_8056_diatracer.771105.771105.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nLEYSGMIIAQAPGLKc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_sup_Slot2-37_1_8056_diatracer.771418.771418.3 [INFO:] Please specify modification and rerun PTMProphet ... ​ [INFO:] processed 137000/186751 spectrum_queries [ERROR:] Cannot initialize for sequence: nQTDLDAAGGEAc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_sup_Slot2-37_1_8056_diatracer.773517.773517.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nAEKGVLGSDALNLQEc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_sup_Slot2-37_1_8056_diatracer.774101.774101.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nYQAAAPSVSNc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_sup_Slot2-37_1_8056_diatracer.776182.776182.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nAAPAEIDQRc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_sup_Slot2-37_1_8056_diatracer.776561.776561.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nEEVPPPEGEc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_sup_Slot2-37_1_8056_diatracer.777154.777154.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nVSEC[160]C[160]RFILNLLc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_sup_Slot2-37_1_8056_diatracer.777709.777709.3 [INFO:] Please specify modification and rerun PTMProphet ... ​ [INFO:] processed 138000/186751 spectrum_queries [ERROR:] Cannot initialize for sequence: nLGIPPSYVRc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_sup_Slot2-37_1_8056_diatracer.778061.778061.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nYVPYSESFSQVLEc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_sup_Slot2-37_1_8056_diatracer.778228.778228.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nQEAVFENLDKPGETQVISVc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_sup_Slot2-37_1_8056_diatracer.779936.779936.4 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nLLPLAC[160]DQLEM[147]LVGDLVGMc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_sup_Slot2-37_1_8056_diatracer.779963.779963.4 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nPLPHPGAGETc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_sup_Slot2-37_1_8056_diatracer.781639.781639.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nAALEYLGSFDHYATc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_sup_Slot2-37_1_8056_diatracer.781801.781801.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nSLHPAMLPAADGAGPRc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_sup_Slot2-37_1_8056_diatracer.781875.781875.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nNEGRDQLSMPLEAIc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_sup_Slot2-37_1_8056_diatracer.782170.782170.3 [INFO:] Please specify modification and rerun PTMProphet ... ​ [INFO:] processed 139000/186751 spectrum_queries [ERROR:] Cannot initialize for sequence: nGSISFPASPQPM[147]YKc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_sup_Slot2-37_1_8056_diatracer.784372.784372.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nEKWDVPGEPESLEAc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_sup_Slot2-37_1_8056_diatracer.784883.784883.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nFPPSSSLVGRWGSSDc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_sup_Slot2-37_1_8056_diatracer.784920.784920.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nTINLLGSDHc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_sup_Slot2-37_1_8056_diatracer.785661.785661.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nEGLKFGGASEc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_sup_Slot2-37_1_8056_diatracer.787037.787037.2 [INFO:] Please specify modification and rerun PTMProphet ... ​ [INFO:] processed 140000/186751 spectrum_queries [ERROR:] Cannot initialize for sequence: nTELTTLEEVc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_sup_Slot2-37_1_8056_diatracer.791523.791523.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nEKEIQPADLc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_sup_Slot2-37_1_8056_diatracer.791606.791606.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nYTTHLAFSTPAEGASc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_sup_Slot2-37_1_8056_diatracer.792061.792061.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nGPGLQTTLAEc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_sup_Slot2-37_1_8056_diatracer.793330.793330.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nPGSQMAIPGKc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_sup_Slot2-37_1_8056_diatracer.793831.793831.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nVAGFDLDGTLc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_sup_Slot2-37_1_8056_diatracer.794700.794700.2 [INFO:] Please specify modification and rerun PTMProphet ... ​ [INFO:] processed 141000/186751 spectrum_queries [ERROR:] Cannot initialize for sequence: nFLAWSGVMEWQEAc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_sup_Slot2-37_1_8056_diatracer.795399.795399.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nLAQQQAAAAAAAAAAASQQGSAKc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_sup_Slot2-37_1_8056_diatracer.795713.795713.4 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nDHLSPLSSSMPFWc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_sup_Slot2-37_1_8056_diatracer.797586.797586.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nIVGGLIELVDc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_sup_Slot2-37_1_8056_diatracer.797970.797970.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nVSAPSGTGHLPGLNPLc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_sup_Slot2-37_1_8056_diatracer.798130.798130.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nDEILPTTPISEQKGGc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_sup_Slot2-37_1_8056_diatracer.798702.798702.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nGPETTGFHHVGQDGLDLLTSc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_sup_Slot2-37_1_8056_diatracer.798763.798763.4 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nKPPVPLDWAEVQSQc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_sup_Slot2-37_1_8056_diatracer.798937.798937.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nVEKDSSVHQPFDLc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_sup_Slot2-37_1_8056_diatracer.799471.799471.3 [INFO:] Please specify modification and rerun PTMProphet ... ​ [INFO:] processed 142000/186751 spectrum_queries [ERROR:] Cannot initialize for sequence: nNEGRDQLSMPLEAIc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_sup_Slot2-37_1_8056_diatracer.800625.800625.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nLLEALSHLVc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_sup_Slot2-37_1_8056_diatracer.801142.801142.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nNEGRDQLSMPLEAIc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_sup_Slot2-37_1_8056_diatracer.802934.802934.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nKDNQFIWKPGLAKc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_sup_Slot2-37_1_8056_diatracer.803481.803481.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nLPDSSSSASASc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_sup_Slot2-37_1_8056_diatracer.804085.804085.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nIVEPPSAAAPAc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_sup_Slot2-37_1_8056_diatracer.804789.804789.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nC[160]VGIVENHGc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_sup_Slot2-37_1_8056_diatracer.804855.804855.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nPEGGGAPGAAQAc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_sup_Slot2-37_1_8056_diatracer.805049.805049.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nPQGEVLSAQQQEKQc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_sup_Slot2-37_1_8056_diatracer.805315.805315.3 [INFO:] Please specify modification and rerun PTMProphet ... ​ [INFO:] processed 143000/186751 spectrum_queries [ERROR:] Cannot initialize for sequence: nNLEIPGKSLc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_sup_Slot2-37_1_8056_diatracer.806608.806608.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nSLPQMSNLEc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_sup_Slot2-37_1_8056_diatracer.806908.806908.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nIVGGLIELVDc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_sup_Slot2-37_1_8056_diatracer.807188.807188.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nEGLKFGGASEc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_sup_Slot2-37_1_8056_diatracer.810277.810277.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nVPEPEPGPFc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_sup_Slot2-37_1_8056_diatracer.811070.811070.2 [INFO:] Please specify modification and rerun PTMProphet ... ​ [INFO:] processed 144000/186751 spectrum_queries [ERROR:] Cannot initialize for sequence: nLPGSGNSPASASc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_sup_Slot2-37_1_8056_diatracer.812538.812538.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nVPEPEPGPFc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_sup_Slot2-37_1_8056_diatracer.813382.813382.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nEDLVQDQDLEAIRc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_sup_Slot2-37_1_8056_diatracer.813425.813425.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nPSSFSDSERc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_sup_Slot2-37_1_8056_diatracer.813496.813496.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nDKDPDNAAGC[160]GGSC[160]Lc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_sup_Slot2-37_1_8056_diatracer.814746.814746.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nEDLLNNGQPc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_sup_Slot2-37_1_8056_diatracer.815002.815002.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nNRVQNPYSHGNIVc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_sup_Slot2-37_1_8056_diatracer.815706.815706.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nITITEC[160]GQIc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_sup_Slot2-37_1_8056_diatracer.816658.816658.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nASPDDPSGLPGRSPDTc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_sup_Slot2-37_1_8056_diatracer.816821.816821.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nDPAGIYQAQSWYLGc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_sup_Slot2-37_1_8056_diatracer.816913.816913.3 [INFO:] Please specify modification and rerun PTMProphet ... ​ [INFO:] processed 145000/186751 spectrum_queries [ERROR:] Cannot initialize for sequence: nDQPEETGPAASDLRc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_sup_Slot2-37_1_8056_diatracer.819900.819900.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nPSQLEPGPTDTQPSPc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_sup_Slot2-37_1_8056_diatracer.822054.822054.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nIC[160]DGVQFGAGIRFLc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_sup_Slot2-37_1_8056_diatracer.822153.822153.3 [INFO:] Please specify modification and rerun PTMProphet ... ​ [INFO:] processed 146000/186751 spectrum_queries [ERROR:] Cannot initialize for sequence: nLAEDAPNFDGPAAE[172]GQPGQc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_sup_Slot2-37_1_8056_diatracer.825174.825174.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nHISHWVLQGVC[160]LTLNSDc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_sup_Slot2-37_1_8056_diatracer.826158.826158.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nNFGPKGFGFGQGAGALVHSEc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_sup_Slot2-37_1_8056_diatracer.826845.826845.2 [INFO:] Please specify modification and rerun PTMProphet ... ​ [INFO:] processed 147000/186751 spectrum_queries [ERROR:] Cannot initialize for sequence: nYGTPQKLVESEC[160]LQANLVEM[147]LFSEDc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_sup_Slot2-37_1_8056_diatracer.830427.830427.3 [INFO:] Please specify modification and rerun PTMProphet ... ​ [INFO:] processed 148000/186751 spectrum_queries [ERROR:] Cannot initialize for sequence: nEIGAIAQVHAENGDLIAEGAc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_sup_Slot2-37_1_8056_diatracer.838242.838242.2 [INFO:] Please specify modification and rerun PTMProphet ... ​ [INFO:] processed 149000/186751 spectrum_queries [ERROR:] Cannot initialize for sequence: nSPSDLLDASAVSATSRYIE[172]E[172]Qc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_sup_Slot2-37_1_8056_diatracer.842095.842095.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nVC[160]SSRTGANGHLYLIIPHSSALADEYWc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_sup_Slot2-37_1_8056_diatracer.845001.845001.4 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nM[147]ELLMSALSPC[160]LLc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_sup_Slot2-37_1_8056_diatracer.845984.845984.2 [INFO:] Please specify modification and rerun PTMProphet ... ​ [INFO:] processed 150000/186751 spectrum_queries [ERROR:] Cannot initialize for sequence: nPLMAPSETQFSHLc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_sup_Slot2-37_1_8056_diatracer.848567.848567.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nSSAAAAAALDLSGRRGc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_sup_Slot2-37_1_8056_diatracer.849142.849142.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nIEEATVTAEDILYc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_sup_Slot2-37_1_8056_diatracer.850808.850808.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nTQDATQTSC[160]STQSDASKQADLc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_sup_Slot2-37_1_8056_diatracer.850853.850853.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nELQAAPSDPTTHLAAc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_sup_Slot2-37_1_8056_diatracer.852967.852967.2 [INFO:] Please specify modification and rerun PTMProphet ... ​ [INFO:] processed 151000/186751 spectrum_queries [ERROR:] Cannot initialize for sequence: nPQNQNAC[160]SSEMFTc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_sup_Slot2-37_1_8056_diatracer.854618.854618.2 [INFO:] Please specify modification and rerun PTMProphet ... ​ [INFO:] processed 152000/186751 spectrum_queries [ERROR:] Cannot initialize for sequence: nSRYM[147]ELYTYPPAc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_sup_Slot2-37_1_8056_diatracer.862086.862086.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nAVVIRHLYNEDNVDISEDTLSPITDVNc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_sup_Slot2-37_1_8056_diatracer.862512.862512.4 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nPQNQNAC[160]SSEMFTc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_sup_Slot2-37_1_8056_diatracer.864157.864157.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nTQDATQTSC[160]STQSDASKQADLc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_sup_Slot2-37_1_8056_diatracer.864205.864205.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nHVDASFFLGKVC[160]FLATGGGRLc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_sup_Slot2-37_1_8056_diatracer.864481.864481.3 [INFO:] Please specify modification and rerun PTMProphet ... ​ [INFO:] processed 153000/186751 spectrum_queries [ERROR:] Cannot initialize for sequence: nQGLLGGAGTVLC[160]SWGc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_sup_Slot2-37_1_8056_diatracer.866306.866306.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nNLNISQHGSDM[147]QVSc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_sup_Slot2-37_1_8056_diatracer.867173.867173.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nENDWGFSNFMAWc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_sup_Slot2-37_1_8056_diatracer.867371.867371.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nILNQPC[160]IPGM[147]KPTc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_sup_Slot2-37_1_8056_diatracer.868456.868456.2 [INFO:] Please specify modification and rerun PTMProphet ... ​ [INFO:] processed 154000/186751 spectrum_queries [ERROR:] Cannot initialize for sequence: nSRYM[147]ELYTYPPAc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_sup_Slot2-37_1_8056_diatracer.871636.871636.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nVLSNLPQDSDPDQLc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_sup_Slot2-37_1_8056_diatracer.873000.873000.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nGGSYSQAASSDSAQGSD[158]VSLTAC[160]c[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_sup_Slot2-37_1_8056_diatracer.875508.875508.3 [INFO:] Please specify modification and rerun PTMProphet ... ​ [INFO:] processed 155000/186751 spectrum_queries [ERROR:] Cannot initialize for sequence: nPASPDRSGAFTWLERGSEAAAGAc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_sup_Slot2-37_1_8056_diatracer.875929.875929.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nLINSETALPFGNDLc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_sup_Slot2-37_1_8056_diatracer.880784.880784.2 [INFO:] Please specify modification and rerun PTMProphet ... ​ [INFO:] processed 156000/186751 spectrum_queries [ERROR:] Cannot initialize for sequence: nLQETVTPKQFLLIAIIMFLGc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_sup_Slot2-37_1_8056_diatracer.882958.882958.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nLETGAPRPPAc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_sup_Slot2-37_1_8056_diatracer.884787.884787.2 [INFO:] Please specify modification and rerun PTMProphet ... ​ [INFO:] processed 157000/186751 spectrum_queries [ERROR:] Cannot initialize for sequence: nDIRPGAAFEPTYIYc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_sup_Slot2-37_1_8056_diatracer.889093.889093.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nRPMRTAGIAGWHGWc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_sup_Slot2-37_1_8056_diatracer.889563.889563.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nELEAELEAQLVQAEc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_sup_Slot2-37_1_8056_diatracer.890055.890055.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nPGEAGLGGQERc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_sup_Slot2-37_1_8056_diatracer.890374.890374.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nEQPSGPWM[147]DNVYNSc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_sup_Slot2-37_1_8056_diatracer.890631.890631.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nSMVAFIAADTMVTTEc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_sup_Slot2-37_1_8056_diatracer.890670.890670.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: n[43]HDGLNDC[160]VNc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_sup_Slot2-37_1_8056_diatracer.891027.891027.2 [INFO:] Please specify modification and rerun PTMProphet ... ​ [INFO:] processed 158000/186751 spectrum_queries [ERROR:] Cannot initialize for sequence: nEWNSAFAC[160]Tc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_sup_Slot2-37_1_8056_diatracer.893425.893425.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nSSVDPAIFAFc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_sup_Slot2-37_1_8056_diatracer.894223.894223.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nILEEYAVFSc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_sup_Slot2-37_1_8056_diatracer.895152.895152.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nHLYPNTPYAc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_sup_Slot2-37_1_8056_diatracer.895669.895669.2 [INFO:] Please specify modification and rerun PTMProphet ... ​ [INFO:] processed 159000/186751 spectrum_queries [ERROR:] Cannot initialize for sequence: nPC[160]LGRRC[160]SAPAAASVAPGGQSGIc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_sup_Slot2-37_1_8056_diatracer.899133.899133.4 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nDVVENNMKQc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_sup_Slot2-37_1_8056_diatracer.900391.900391.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nGHYAGMGSSGVGc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_sup_Slot2-37_1_8056_diatracer.900736.900736.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nMSNNGADLTFc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_sup_Slot2-37_1_8056_diatracer.902368.902368.2 [INFO:] Please specify modification and rerun PTMProphet ... ​ [INFO:] processed 160000/186751 spectrum_queries [ERROR:] Cannot initialize for sequence: nSLHPAM[147]LPAADGAGPRc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_sup_Slot2-37_1_8056_diatracer.904916.904916.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nEGNAEAEASPDSAGTLAc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_sup_Slot2-37_1_8056_diatracer.905204.905204.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nGVGQGEGMPSSDFTTEc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_sup_Slot2-37_1_8056_diatracer.906629.906629.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nGPTWTEVPEc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_sup_Slot2-37_1_8056_diatracer.906872.906872.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nSRWLGGAAAWc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_sup_Slot2-37_1_8056_diatracer.907594.907594.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nNMALFEPPSTDTLPPc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_sup_Slot2-37_1_8056_diatracer.907811.907811.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nPEVEVSPRQc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_sup_Slot2-37_1_8056_diatracer.908158.908158.2 [INFO:] Please specify modification and rerun PTMProphet ... ​ [INFO:] processed 161000/186751 spectrum_queries [ERROR:] Cannot initialize for sequence: nKDDENIPMETGNSPAc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_sup_Slot2-37_1_8056_diatracer.909282.909282.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nSGAGGGLGAMAPDLQLEAc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_sup_Slot2-37_1_8056_diatracer.909403.909403.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nLEVSTEDVHc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_sup_Slot2-37_1_8056_diatracer.909874.909874.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nNESIWIHLGGQMGPLGKSIDc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_sup_Slot2-37_1_8056_diatracer.910151.910151.4 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nTFLKC[160]GALQGLYTTVDFGTGc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_sup_Slot2-37_1_8056_diatracer.911613.911613.4 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nSGLTATSTSPVc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_sup_Slot2-37_1_8056_diatracer.911692.911692.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nPWQSTSSNSSc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_sup_Slot2-37_1_8056_diatracer.912747.912747.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nSLKWLLSIINLVQQc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_sup_Slot2-37_1_8056_diatracer.913290.913290.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nFTVSELAEDTLLQAAc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_sup_Slot2-37_1_8056_diatracer.913319.913319.3 [INFO:] Please specify modification and rerun PTMProphet ... ​ [INFO:] processed 162000/186751 spectrum_queries [ERROR:] Cannot initialize for sequence: nAENLGGPGAGAGTLAGKDAc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_sup_Slot2-37_1_8056_diatracer.915993.915993.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nEGGDTAVAMSEc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_sup_Slot2-37_1_8056_diatracer.916999.916999.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nGASANWWNHc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_sup_Slot2-37_1_8056_diatracer.917666.917666.2 [INFO:] Please specify modification and rerun PTMProphet ... ​ [INFO:] processed 163000/186751 spectrum_queries [ERROR:] Cannot initialize for sequence: nSGLYPTGSSGSc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_sup_Slot2-37_1_8056_diatracer.923370.923370.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nEQHGEDGVEDM[147]TQLc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_sup_Slot2-37_1_8056_diatracer.923424.923424.3 [INFO:] Please specify modification and rerun PTMProphet ... ​ [INFO:] processed 164000/186751 spectrum_queries [ERROR:] Cannot initialize for sequence: nPEAGGGGRGVGAVAAAAAAAc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_sup_Slot2-37_1_8056_diatracer.926572.926572.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nFVTSWASSGSASQGQGTc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_sup_Slot2-37_1_8056_diatracer.927861.927861.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nMSNNGADLTFc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_sup_Slot2-37_1_8056_diatracer.928975.928975.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nELLMLQDNLc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_sup_Slot2-37_1_8056_diatracer.930371.930371.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nSSQRSDAGAC[160]LM[147]TAQc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_sup_Slot2-37_1_8056_diatracer.930687.930687.3 [INFO:] Please specify modification and rerun PTMProphet ... ​ [INFO:] processed 165000/186751 spectrum_queries [ERROR:] Cannot initialize for sequence: nTQSATPPSRTLSATPPc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_sup_Slot2-37_1_8056_diatracer.932633.932633.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nSLKWLLSIINLVQQc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_sup_Slot2-37_1_8056_diatracer.932647.932647.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nLLQYQPAPGAAAETAGc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_sup_Slot2-37_1_8056_diatracer.933305.933305.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nGTPGAVPTGAGSVAASGAGAc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_sup_Slot2-37_1_8056_diatracer.935523.935523.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nDLQAVLC[160]PPc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_sup_Slot2-37_1_8056_diatracer.935801.935801.2 [INFO:] Please specify modification and rerun PTMProphet ... ​ [INFO:] processed 166000/186751 spectrum_queries [ERROR:] Cannot initialize for sequence: nLEAERAKNQc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_sup_Slot2-37_1_8056_diatracer.938305.938305.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nGLGFC[160]YFSLc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_sup_Slot2-37_1_8056_diatracer.938324.938324.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nILEEYAVFSc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_sup_Slot2-37_1_8056_diatracer.938670.938670.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nLVLSLAAVYEc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_sup_Slot2-37_1_8056_diatracer.939185.939185.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nDRVAVQPSSLEMSALc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_sup_Slot2-37_1_8056_diatracer.939449.939449.3 [INFO:] Please specify modification and rerun PTMProphet ... ​ [INFO:] processed 167000/186751 spectrum_queries [ERROR:] Cannot initialize for sequence: nMGRAAAGPGLQPPQHPQAGEAc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_sup_Slot2-37_1_8056_diatracer.942909.942909.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nGGSYSQAASSDSAQGSDVSLTAc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_sup_Slot2-37_1_8056_diatracer.946051.946051.2 [INFO:] Please specify modification and rerun PTMProphet ... ​ [INFO:] processed 169000/186751 spectrum_queries [ERROR:] Cannot initialize for sequence: nFLAWSGVMEWQEAc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_sup_Slot2-37_1_8056_diatracer.955328.955328.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nIQEESSSSISSEM[147]Kc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_sup_Slot2-37_1_8056_diatracer.955405.955405.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nEENEGVYNGSWGGRGEDLAMHc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_sup_Slot2-37_1_8056_diatracer.955475.955475.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nLAATNALLNSLE[172]FTc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_sup_Slot2-37_1_8056_diatracer.956070.956070.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nPESLHVPPETLGEGDc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_sup_Slot2-37_1_8056_diatracer.956097.956097.2 [INFO:] Please specify modification and rerun PTMProphet ... ​ [INFO:] processed 170000/186751 spectrum_queries [ERROR:] Cannot initialize for sequence: nAITIAGIPQSIIE[172]C[160]c[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_sup_Slot2-37_1_8056_diatracer.959729.959729.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nDELHIVEAEAMNYc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_sup_Slot2-37_1_8056_diatracer.959741.959741.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nATAGEPSPHGQVSSPPc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_sup_Slot2-37_1_8056_diatracer.960844.960844.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nATAGEPSPHGQVSSPPc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_sup_Slot2-37_1_8056_diatracer.964304.964304.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nIQEESSSSISSEM[147]Kc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_sup_Slot2-37_1_8056_diatracer.964335.964335.2 [INFO:] Please specify modification and rerun PTMProphet ... ​ [INFO:] processed 171000/186751 spectrum_queries [ERROR:] Cannot initialize for sequence: nLMSELYHPDDHVLc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_sup_Slot2-37_1_8056_diatracer.968098.968098.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nTELSLLLQNTHPRc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_sup_Slot2-37_1_8056_diatracer.968135.968135.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nGIIVIGDGSSM[147]DVIAPc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_sup_Slot2-37_1_8056_diatracer.969528.969528.2 [INFO:] Please specify modification and rerun PTMProphet ... ​ [INFO:] processed 172000/186751 spectrum_queries [ERROR:] Cannot initialize for sequence: nQIEDTVLYGYYTNc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_sup_Slot2-37_1_8056_diatracer.971728.971728.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nYEKIQEASLRETLSIEQQLGc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_sup_Slot2-37_1_8056_diatracer.976733.976733.3 [INFO:] Please specify modification and rerun PTMProphet ... ​ [INFO:] processed 173000/186751 spectrum_queries [ERROR:] Cannot initialize for sequence: nGGSYSQAASSDSAQGSDMSLTAC[160]Kc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_sup_Slot2-37_1_8056_diatracer.977426.977426.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nPAELSPAAAAAPGSAEASc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_sup_Slot2-37_1_8056_diatracer.978355.978355.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nVWVQSLEKKAEDLSSLNGQLQc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_sup_Slot2-37_1_8056_diatracer.978548.978548.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nYEPLFEINTIRFc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_sup_Slot2-37_1_8056_diatracer.980744.980744.2 [INFO:] Please specify modification and rerun PTMProphet ... ​ [INFO:] processed 174000/186751 spectrum_queries [ERROR:] Cannot initialize for sequence: nSELPTDNSETVENTc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_sup_Slot2-37_1_8056_diatracer.983783.983783.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nDQPC[160]AAGAPPPEANGAc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_sup_Slot2-37_1_8056_diatracer.985267.985267.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nHNFTSASTDVSYRNc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_sup_Slot2-37_1_8056_diatracer.986315.986315.2 [INFO:] Please specify modification and rerun PTMProphet ... ​ [INFO:] processed 175000/186751 spectrum_queries [ERROR:] Cannot initialize for sequence: nLEKEIEQEETLSAc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_sup_Slot2-37_1_8056_diatracer.990376.990376.2 [INFO:] Please specify modification and rerun PTMProphet ... ​ [INFO:] processed 176000/186751 spectrum_queries [ERROR:] Cannot initialize for sequence: nETVPPGNGAPDVFQTc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_sup_Slot2-37_1_8056_diatracer.994316.994316.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nLGRYMEDTSVPAVPTc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_sup_Slot2-37_1_8056_diatracer.995470.995470.3 [INFO:] Please specify modification and rerun PTMProphet ... ​ [INFO:] processed 177000/186751 spectrum_queries [ERROR:] Cannot initialize for sequence: nSC[160]PM[147]AM[147]TSGQc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_sup_Slot2-37_1_8056_diatracer.1000182.1000182.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nPEVTTMPLGLc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_sup_Slot2-37_1_8056_diatracer.1000450.1000450.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nAYSGGHEM[147]ALGc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_sup_Slot2-37_1_8056_diatracer.1000706.1000706.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nSPSRGSSGVNTGSPTPGPc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_sup_Slot2-37_1_8056_diatracer.1000921.1000921.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nHMVYLIVEGVPRWVc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_sup_Slot2-37_1_8056_diatracer.1005192.1005192.3 [INFO:] Please specify modification and rerun PTMProphet ... ​ [INFO:] processed 178000/186751 spectrum_queries [ERROR:] Cannot initialize for sequence: nSGAGPGAAAAAAGPGc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_sup_Slot2-37_1_8056_diatracer.1006567.1006567.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nGVVPPHPKSPPc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_sup_Slot2-37_1_8056_diatracer.1008382.1008382.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nGMDKTAGGLAQKMVFEc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_sup_Slot2-37_1_8056_diatracer.1009259.1009259.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nGAPQAGAVLQAPSSWPRc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_sup_Slot2-37_1_8056_diatracer.1009647.1009647.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nFYTVLSTQNLLIAEEc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_sup_Slot2-37_1_8056_diatracer.1010179.1010179.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nVELNKPSDSVGKDVFc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_sup_Slot2-37_1_8056_diatracer.1010480.1010480.3 [INFO:] Please specify modification and rerun PTMProphet ... ​ [INFO:] processed 179000/186751 spectrum_queries [ERROR:] Cannot initialize for sequence: nGTGGVDTAAVGGVFDVSNAc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_sup_Slot2-37_1_8056_diatracer.1010888.1010888.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nSSLFQALLGC[160]c[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_sup_Slot2-37_1_8056_diatracer.1012321.1012321.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nVELNKPSDSVGKDVFc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_sup_Slot2-37_1_8056_diatracer.1013012.1013012.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nQTIIPDYRNMIGQGAc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_sup_Slot2-37_1_8056_diatracer.1014367.1014367.3 [INFO:] Please specify modification and rerun PTMProphet ... ​ [INFO:] processed 180000/186751 spectrum_queries [ERROR:] Cannot initialize for sequence: nPHGIVLLLLLGASALLGc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_sup_Slot2-37_1_8056_diatracer.1016416.1016416.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nLTGNEWRRTc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_sup_Slot2-37_1_8056_diatracer.1016923.1016923.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nKPGINVASDWSIHLRc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_sup_Slot2-37_1_8056_diatracer.1017426.1017426.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nHAVAGC[160]IISLLWFFGc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_sup_Slot2-37_1_8056_diatracer.1018541.1018541.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nQRIDEFEAMc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_sup_Slot2-37_1_8056_diatracer.1019901.1019901.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nDLPEHAVLKMKGMEFc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_sup_Slot2-37_1_8056_diatracer.1020236.1020236.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nILAHLTGTEFc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_sup_Slot2-37_1_8056_diatracer.1020619.1020619.2 [INFO:] Please specify modification and rerun PTMProphet ... ​ [INFO:] processed 181000/186751 spectrum_queries [ERROR:] Cannot initialize for sequence: nSHPSTLDQMEc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_sup_Slot2-37_1_8056_diatracer.1022798.1022798.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nPHGIVLLLLLGASALLGc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_sup_Slot2-37_1_8056_diatracer.1024012.1024012.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nTPGWAASLMWSESLPPC[160]LPQAc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_sup_Slot2-37_1_8056_diatracer.1025199.1025199.4 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nSIDQFGLGKGEc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_sup_Slot2-37_1_8056_diatracer.1025383.1025383.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nLSPALPPPFSC[160]SPC[160]LPc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_sup_Slot2-37_1_8056_diatracer.1025388.1025388.3 [INFO:] Please specify modification and rerun PTMProphet ... ​ [INFO:] processed 182000/186751 spectrum_queries [ERROR:] Cannot initialize for sequence: nAGGLLVAAMSAFLGIAPSPc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_sup_Slot2-37_1_8056_diatracer.1030497.1030497.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nALIDETQDVLc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_sup_Slot2-37_1_8056_diatracer.1031395.1031395.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nDVEDLVNC[160]Hc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_sup_Slot2-37_1_8056_diatracer.1032808.1032808.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nTIDELVEC[160]EETFGRc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_sup_Slot2-37_1_8056_diatracer.1032835.1032835.3 [INFO:] Please specify modification and rerun PTMProphet ... ​ [INFO:] processed 183000/186751 spectrum_queries [ERROR:] Cannot initialize for sequence: nMTLTTGTVNLFVYLKc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_sup_Slot2-37_1_8056_diatracer.1034119.1034119.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nDFLEGGSVLQc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_sup_Slot2-37_1_8056_diatracer.1036186.1036186.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nLSGFLPSSWPGPC[160]TFc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_sup_Slot2-37_1_8056_diatracer.1036442.1036442.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nLDGIALPPTVVc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_sup_Slot2-37_1_8056_diatracer.1037634.1037634.2 [INFO:] Please specify modification and rerun PTMProphet ... ​ [INFO:] processed 184000/186751 spectrum_queries [ERROR:] Cannot initialize for sequence: nDLAAAPTSYLDc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_sup_Slot2-37_1_8056_diatracer.1040193.1040193.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nQSSQSSSVHQc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_sup_Slot2-37_1_8056_diatracer.1041472.1041472.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nYDRLGFLLNLDSKLc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_sup_Slot2-37_1_8056_diatracer.1041925.1041925.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nLQEALTFTC[160]c[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_sup_Slot2-37_1_8056_diatracer.1042085.1042085.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nASVYQTIFSTc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_sup_Slot2-37_1_8056_diatracer.1044018.1044018.2 [INFO:] Please specify modification and rerun PTMProphet ... ​ [INFO:] processed 185000/186751 spectrum_queries [ERROR:] Cannot initialize for sequence: nLD[202]ENVHTDNc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_sup_Slot2-37_1_8056_diatracer.1045021.1045021.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nELNSANSLHEc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_sup_Slot2-37_1_8056_diatracer.1046083.1046083.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nPFTRGDGPSITEVQVGc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_sup_Slot2-37_1_8056_diatracer.1046508.1046508.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nMTLTTGTVNLFVYLKc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_sup_Slot2-37_1_8056_diatracer.1046747.1046747.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nLD[202]ENVHTDNc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_sup_Slot2-37_1_8056_diatracer.1047551.1047551.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nSAPSAGLGSNVVRNRTNc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_sup_Slot2-37_1_8056_diatracer.1049180.1049180.3 [INFO:] Please specify modification and rerun PTMProphet ... ​ [INFO:] processed 186000/186751 spectrum_queries [ERROR:] Cannot initialize for sequence: nLD[202]ENVHTDNc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_sup_Slot2-37_1_8056_diatracer.1050074.1050074.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nQHGVGGAFGC[160]Rc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_sup_Slot2-37_1_8056_diatracer.1050445.1050445.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nEDLSSNC[160]PGPTSADHDc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_sup_Slot2-37_1_8056_diatracer.1050496.1050496.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nC[160]IYPDGEIHc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_sup_Slot2-37_1_8056_diatracer.1050560.1050560.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nPQASALEMPKc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_sup_Slot2-37_1_8056_diatracer.1051821.1051821.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nAWDSQGIPEGWGTSSPc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_sup_Slot2-37_1_8056_diatracer.1052432.1052432.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nTFERVYGLAGEPAAPSGc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_sup_Slot2-37_1_8056_diatracer.1052477.1052477.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nDRWTLVARc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_sup_Slot2-37_1_8056_diatracer.1053454.1053454.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nQASVDSGIVQc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_sup_Slot2-37_1_8056_diatracer.1054049.1054049.3 [INFO:] Please specify modification and rerun PTMProphet ... [INFO:] done ... [INFO:] Computing EM Models ... [INFO:] Iterating PTM Model: ....5...done [INFO:] done ... [INFO:] done ... [INFO:] Creating 1 threads [INFO:] Wait for threads to finish ... [INFO:] Reading file interact-20240927_SW-KF_S1_sup_Slot2-37_1_8056_diatracer.pep.xml ... [ERROR:] Cannot initialize for sequence: nDLPTSQFLPQSVLGMDPLTc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_sup_Slot2-37_1_8056_diatracer.03370.03370.2 [INFO:] Please specify modification and rerun PTMProphet ... ​ [INFO:] written 2000/186751 spectrum_queries [ERROR:] Cannot initialize for sequence: nIYHTIAYLTPLPQPNRALSFFVGYGVTLc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_sup_Slot2-37_1_8056_diatracer.11160.11160.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nFLTLMGTSLHLVFQM[147]GVIFPQc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_sup_Slot2-37_1_8056_diatracer.15428.15428.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nLGQAVPGPLGSAAGAAAAAAc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_sup_Slot2-37_1_8056_diatracer.15606.15606.2 [INFO:] Please specify modification and rerun PTMProphet ... ​ [INFO:] written 3000/186751 spectrum_queries [ERROR:] Cannot initialize for sequence: nMKPSNEEATAAANGNGSc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_sup_Slot2-37_1_8056_diatracer.18072.18072.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nYPSKSSLVADC[160]AITVc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_sup_Slot2-37_1_8056_diatracer.18443.18443.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nEKEQNEAEERSSRc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_sup_Slot2-37_1_8056_diatracer.19178.19178.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nALAAILFGAVLLAAVALAVC[160]VAKLSc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_sup_Slot2-37_1_8056_diatracer.19260.19260.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nSQFSAAAVPSTRSLFAc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_sup_Slot2-37_1_8056_diatracer.21061.21061.2 [INFO:] Please specify modification and rerun PTMProphet ... ​ [INFO:] written 4000/186751 spectrum_queries [ERROR:] Cannot initialize for sequence: nKGEAQGSAASAAVAGTAAAc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_sup_Slot2-37_1_8056_diatracer.22270.22270.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nDINQLSEALLSLNFc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_sup_Slot2-37_1_8056_diatracer.23424.23424.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nHILDDISTMFDALADQLDAMLDc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_sup_Slot2-37_1_8056_diatracer.23784.23784.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nC[160]SM[147]AALFIITTYGKc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_sup_Slot2-37_1_8056_diatracer.23964.23964.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nGEIWNIAAPKKDTC[160]YNGSVALIQMEPFYc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_sup_Slot2-37_1_8056_diatracer.24788.24788.4 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nMSSLLPTMWLGAQNGc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_sup_Slot2-37_1_8056_diatracer.26128.26128.2 [INFO:] Please specify modification and rerun PTMProphet ... ​ [INFO:] written 5000/186751 spectrum_queries [ERROR:] Cannot initialize for sequence: nE[172]C[160]ILGMNPSRDVHc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_sup_Slot2-37_1_8056_diatracer.26521.26521.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nALQDAFSGLFWQPSc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_sup_Slot2-37_1_8056_diatracer.27987.27987.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nM[147]SLTLNQVIQDAQKc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_sup_Slot2-37_1_8056_diatracer.29085.29085.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nYLPELLGNTGLLM[147]Kc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_sup_Slot2-37_1_8056_diatracer.30070.30070.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nINEAFIEM[147]ATTEDAc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_sup_Slot2-37_1_8056_diatracer.31232.31232.2 [INFO:] Please specify modification and rerun PTMProphet ... ​ [INFO:] written 6000/186751 spectrum_queries [ERROR:] Cannot initialize for sequence: nQASDLGLAPALPEPMGc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_sup_Slot2-37_1_8056_diatracer.32596.32596.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nFPGFGTVVVC[160]SPQSDc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_sup_Slot2-37_1_8056_diatracer.33660.33660.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nYLPELLGNTGLLM[147]Kc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_sup_Slot2-37_1_8056_diatracer.36120.36120.2 [INFO:] Please specify modification and rerun PTMProphet ... ​ [INFO:] written 7000/186751 spectrum_queries [ERROR:] Cannot initialize for sequence: nEAAAFRAPQQWHYc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_sup_Slot2-37_1_8056_diatracer.37504.37504.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nKANDGEWYHVDIQc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_sup_Slot2-37_1_8056_diatracer.39127.39127.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nQPPPAEAGAVNRTEAAc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_sup_Slot2-37_1_8056_diatracer.39143.39143.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nSALQAIGVEAHQLLSVc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_sup_Slot2-37_1_8056_diatracer.39597.39597.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nINEAFIEM[147]ATTEDAc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_sup_Slot2-37_1_8056_diatracer.40432.40432.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nIM[147]DQAITVGAPVIGLNDSGGARIQc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_sup_Slot2-37_1_8056_diatracer.41086.41086.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nC[160]DLSSLQPLPPGFKc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_sup_Slot2-37_1_8056_diatracer.41924.41924.2 [INFO:] Please specify modification and rerun PTMProphet ... ​ [INFO:] written 8000/186751 spectrum_queries [ERROR:] Cannot initialize for sequence: nQPPPAEAGAVNRTEAAc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_sup_Slot2-37_1_8056_diatracer.42537.42537.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nQATDLLGWEEQSFYVAVDEFTc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_sup_Slot2-37_1_8056_diatracer.44802.44802.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nDVSAAPGDRSC[160]PSPVRAGTASSWVc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_sup_Slot2-37_1_8056_diatracer.46635.46635.3 [INFO:] Please specify modification and rerun PTMProphet ... ​ [INFO:] written 9000/186751 spectrum_queries [ERROR:] Cannot initialize for sequence: nFLVQLDDYSLSSTC[160]C[160]FLTFc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_sup_Slot2-37_1_8056_diatracer.48514.48514.4 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nEVASQLGYEKc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_sup_Slot2-37_1_8056_diatracer.48970.48970.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: n[43]SKQQPTQFINPETPGYVGFANc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_sup_Slot2-37_1_8056_diatracer.51229.51229.4 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nVADEVVLPRQc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_sup_Slot2-37_1_8056_diatracer.51716.51716.2 [INFO:] Please specify modification and rerun PTMProphet ... ​ [INFO:] written 10000/186751 spectrum_queries [ERROR:] Cannot initialize for sequence: nTVSYAVEFHPDTGDIIM[147]EFRc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_sup_Slot2-37_1_8056_diatracer.54179.54179.4 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nVLQLQGQGVQVc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_sup_Slot2-37_1_8056_diatracer.54217.54217.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nALSPSPSGTGDEc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_sup_Slot2-37_1_8056_diatracer.56199.56199.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nKFVEWLQNAc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_sup_Slot2-37_1_8056_diatracer.57162.57162.2 [INFO:] Please specify modification and rerun PTMProphet ... ​ [INFO:] written 11000/186751 spectrum_queries [ERROR:] Cannot initialize for sequence: nLHEEVEAASLFAPVRSc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_sup_Slot2-37_1_8056_diatracer.61070.61070.3 [INFO:] Please specify modification and rerun PTMProphet ... ​ [INFO:] written 12000/186751 spectrum_queries [ERROR:] Cannot initialize for sequence: nQSVLQGDTFKGc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_sup_Slot2-37_1_8056_diatracer.65243.65243.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nTVSQGPLLAPDGPLAQSPc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_sup_Slot2-37_1_8056_diatracer.66233.66233.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nVGQTGLELLTSc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_sup_Slot2-37_1_8056_diatracer.66533.66533.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nLSGPGATDSPPALc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_sup_Slot2-37_1_8056_diatracer.67789.67789.2 [INFO:] Please specify modification and rerun PTMProphet ... ​ [INFO:] written 13000/186751 spectrum_queries [ERROR:] Cannot initialize for sequence: nGQSPQSSPDLPVHYIPVAPDSNTc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_sup_Slot2-37_1_8056_diatracer.70390.70390.4 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nLANIETEFKEc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_sup_Slot2-37_1_8056_diatracer.70456.70456.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nLTTTSPC[160]QATVFSM[147]ITc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_sup_Slot2-37_1_8056_diatracer.72070.72070.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nPPSIYMITPNGc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_sup_Slot2-37_1_8056_diatracer.73396.73396.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nEPAVLMGILGNc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_sup_Slot2-37_1_8056_diatracer.73980.73980.2 [INFO:] Please specify modification and rerun PTMProphet ... ​ [INFO:] written 14000/186751 spectrum_queries [ERROR:] Cannot initialize for sequence: nVQSLHKSMEPc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_sup_Slot2-37_1_8056_diatracer.76063.76063.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nALDDMISTLKc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_sup_Slot2-37_1_8056_diatracer.76484.76484.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nLGLLAGFAFLTGVGLGPALEFC[160]IAc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_sup_Slot2-37_1_8056_diatracer.78126.78126.4 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nTQAIVC[160]QQLDLTHLKc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_sup_Slot2-37_1_8056_diatracer.78491.78491.3 [INFO:] Please specify modification and rerun PTMProphet ... ​ [INFO:] written 15000/186751 spectrum_queries [ERROR:] Cannot initialize for sequence: nPGDVPVVTFHPc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_sup_Slot2-37_1_8056_diatracer.81993.81993.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nDINLASFIEQVAVSMTc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_sup_Slot2-37_1_8056_diatracer.82884.82884.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nELAEDDSILKc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_sup_Slot2-37_1_8056_diatracer.82906.82906.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nQSVLQGDTFKGc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_sup_Slot2-37_1_8056_diatracer.83205.83205.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nEETSKALQNEc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_sup_Slot2-37_1_8056_diatracer.83374.83374.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nTATLPPQNPIVc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_sup_Slot2-37_1_8056_diatracer.84177.84177.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nC[160]PHISFTGNIC[160]VQPPc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_sup_Slot2-37_1_8056_diatracer.85013.85013.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nVAAGSLTAGPALRSPGAVAPM[147]SPGLPc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_sup_Slot2-37_1_8056_diatracer.85770.85770.4 [INFO:] Please specify modification and rerun PTMProphet ... ​ [INFO:] written 16000/186751 spectrum_queries [ERROR:] Cannot initialize for sequence: nEALMPPLEQLc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_sup_Slot2-37_1_8056_diatracer.85817.85817.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nLFLEMLEAKVc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_sup_Slot2-37_1_8056_diatracer.86061.86061.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nPC[160]ALPNSSTWc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_sup_Slot2-37_1_8056_diatracer.87699.87699.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nEIQNGNLHESc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_sup_Slot2-37_1_8056_diatracer.88166.88166.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nTGSSVTTVATSQIVNESVc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_sup_Slot2-37_1_8056_diatracer.90341.90341.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: n[43]MALLEDEAQERDESSc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_sup_Slot2-37_1_8056_diatracer.91279.91279.3 [INFO:] Please specify modification and rerun PTMProphet ... ​ [INFO:] written 17000/186751 spectrum_queries [ERROR:] Cannot initialize for sequence: nFSGC[160]TLTDGTLWLTPVc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_sup_Slot2-37_1_8056_diatracer.93640.93640.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nGEIGPM[147]GIPGPQGPPGPHc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_sup_Slot2-37_1_8056_diatracer.94389.94389.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nMTSTTAEGAGEQc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_sup_Slot2-37_1_8056_diatracer.95786.95786.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nQYYTLLNQAPD[158]M[147]LHc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_sup_Slot2-37_1_8056_diatracer.96430.96430.3 [INFO:] Please specify modification and rerun PTMProphet ... ​ [INFO:] written 18000/186751 spectrum_queries [ERROR:] Cannot initialize for sequence: nDYTVTQVPSMc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_sup_Slot2-37_1_8056_diatracer.98354.98354.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nVAWGGAEC[160]C[160]NAFSGNESc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_sup_Slot2-37_1_8056_diatracer.101771.101771.3 [INFO:] Please specify modification and rerun PTMProphet ... ​ [INFO:] written 19000/186751 spectrum_queries [ERROR:] Cannot initialize for sequence: nAPATTNNTAHQc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_sup_Slot2-37_1_8056_diatracer.102737.102737.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nC[160]ATRGFVC[160]IC[160]VC[160]VHAc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_sup_Slot2-37_1_8056_diatracer.103894.103894.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nVRDAAANLMHTc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_sup_Slot2-37_1_8056_diatracer.104248.104248.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nQSVLQGDTFKGc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_sup_Slot2-37_1_8056_diatracer.105950.105950.2 [INFO:] Please specify modification and rerun PTMProphet ... ​ [INFO:] written 20000/186751 spectrum_queries [ERROR:] Cannot initialize for sequence: nSSETPFPPIVGQPLC[160]PFSVc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_sup_Slot2-37_1_8056_diatracer.112266.112266.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nAMIHSGKGEIQLASTPPNLNc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_sup_Slot2-37_1_8056_diatracer.114714.114714.2 [INFO:] Please specify modification and rerun PTMProphet ... ​ [INFO:] written 22000/186751 spectrum_queries [ERROR:] Cannot initialize for sequence: nC[160]SAPKYIDYLMTWVQDQc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_sup_Slot2-37_1_8056_diatracer.122063.122063.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nFLSPPSASTRSPAPSPGc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_sup_Slot2-37_1_8056_diatracer.122504.122504.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nQALLM[147]SAM[147]VGQPVPVGKAHQWWc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_sup_Slot2-37_1_8056_diatracer.125619.125619.3 [INFO:] Please specify modification and rerun PTMProphet ... ​ [INFO:] written 23000/186751 spectrum_queries [ERROR:] Cannot initialize for sequence: nQAVEAQLALVEERSAc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_sup_Slot2-37_1_8056_diatracer.126964.126964.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nLLLEEEDSDAYALNHTLSVEGFc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_sup_Slot2-37_1_8056_diatracer.128605.128605.3 [INFO:] Please specify modification and rerun PTMProphet ... ​ [INFO:] written 24000/186751 spectrum_queries [ERROR:] Cannot initialize for sequence: nLYAYTFIC[160]VLQEC[160]c[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_sup_Slot2-37_1_8056_diatracer.132101.132101.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nGTGGVDTAAVGGVFDVSNAc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_sup_Slot2-37_1_8056_diatracer.132233.132233.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nVLGDENEPAPGPLAEYc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_sup_Slot2-37_1_8056_diatracer.133087.133087.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nSPVNMVTVAMVAGQC[160]EFAHILHSc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_sup_Slot2-37_1_8056_diatracer.133326.133326.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nSSPSFMVSTLVSTLDAc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_sup_Slot2-37_1_8056_diatracer.136470.136470.2 [INFO:] Please specify modification and rerun PTMProphet ... ​ [INFO:] written 26000/186751 spectrum_queries [ERROR:] Cannot initialize for sequence: nTGGFLGTTSPGPMAELYc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_sup_Slot2-37_1_8056_diatracer.142773.142773.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nAQSVLYQSDLDESESc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_sup_Slot2-37_1_8056_diatracer.144824.144824.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nTSYLEPPPDGYENVTNIVPPYNAFSAQGMPEc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_sup_Slot2-37_1_8056_diatracer.148056.148056.4 [INFO:] Please specify modification and rerun PTMProphet ... ​ [INFO:] written 27000/186751 spectrum_queries [ERROR:] Cannot initialize for sequence: nDEVFHFFNVLASHSc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_sup_Slot2-37_1_8056_diatracer.151343.151343.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nRELQQVTAGEAASIHc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_sup_Slot2-37_1_8056_diatracer.151574.151574.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: n[43]SVGVSTSAPLSPTSGTSVGM[147]STFSIMc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_sup_Slot2-37_1_8056_diatracer.152643.152643.3 [INFO:] Please specify modification and rerun PTMProphet ... ​ [INFO:] written 28000/186751 spectrum_queries [ERROR:] Cannot initialize for sequence: nASSVNAAPTSFLc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_sup_Slot2-37_1_8056_diatracer.156573.156573.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nPVQLGAALGALAGAc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_sup_Slot2-37_1_8056_diatracer.156633.156633.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nDQKSKENGASVc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_sup_Slot2-37_1_8056_diatracer.158489.158489.2 [INFO:] Please specify modification and rerun PTMProphet ... ​ [INFO:] written 29000/186751 spectrum_queries [ERROR:] Cannot initialize for sequence: nIDEANLLDTMSc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_sup_Slot2-37_1_8056_diatracer.159467.159467.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nLQESLQQRALc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_sup_Slot2-37_1_8056_diatracer.160144.160144.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nLTATAGFFGGSALc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_sup_Slot2-37_1_8056_diatracer.161320.161320.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nVWTSAETPLTILLQQPc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_sup_Slot2-37_1_8056_diatracer.161571.161571.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nGQILMPNIGYGSc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_sup_Slot2-37_1_8056_diatracer.163226.163226.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nAALAPLLALC[160]LLPALLPPc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_sup_Slot2-37_1_8056_diatracer.163680.163680.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nELTSGC[160]TLASSSc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_sup_Slot2-37_1_8056_diatracer.163895.163895.2 [INFO:] Please specify modification and rerun PTMProphet ... ​ [INFO:] written 30000/186751 spectrum_queries [ERROR:] Cannot initialize for sequence: nGELGGLGELNLHc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_sup_Slot2-37_1_8056_diatracer.164086.164086.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nVLAAETTSQQEc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_sup_Slot2-37_1_8056_diatracer.164181.164181.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nTLEQLYEAAQGPPEAASAc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_sup_Slot2-37_1_8056_diatracer.164468.164468.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nLKNNSPGTAEGC[160]GGGGGGGGGGc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_sup_Slot2-37_1_8056_diatracer.164598.164598.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nEYQTVRSEWc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_sup_Slot2-37_1_8056_diatracer.165263.165263.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nVDVFTNLGYRAFSLSFc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_sup_Slot2-37_1_8056_diatracer.165527.165527.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nDHPAFAPLYFPMELHRKEALTc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_sup_Slot2-37_1_8056_diatracer.165584.165584.4 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nLQGGGGELGFMGADAAYAVc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_sup_Slot2-37_1_8056_diatracer.166037.166037.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nRLIALETEMC[160]c[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_sup_Slot2-37_1_8056_diatracer.167566.167566.2 [INFO:] Please specify modification and rerun PTMProphet ... ​ [INFO:] written 31000/186751 spectrum_queries [ERROR:] Cannot initialize for sequence: nIPRESHTDC[160]EHQVAKc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_sup_Slot2-37_1_8056_diatracer.169472.169472.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nIDEANLLDTMSc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_sup_Slot2-37_1_8056_diatracer.169820.169820.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nGEPGPPLGPEAADc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_sup_Slot2-37_1_8056_diatracer.173249.173249.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nMGASVLLLLATPLLLQWc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_sup_Slot2-37_1_8056_diatracer.173965.173965.3 [INFO:] Please specify modification and rerun PTMProphet ... ​ [INFO:] written 32000/186751 spectrum_queries [ERROR:] Cannot initialize for sequence: nPGQPSVLGEPERWDVSAc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_sup_Slot2-37_1_8056_diatracer.176145.176145.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nHATFVDGLSIHHSFSRc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_sup_Slot2-37_1_8056_diatracer.176954.176954.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nVIGGFAGTALGAWLGSPPSSc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_sup_Slot2-37_1_8056_diatracer.178273.178273.3 [INFO:] Please specify modification and rerun PTMProphet ... ​ [INFO:] written 33000/186751 spectrum_queries [ERROR:] Cannot initialize for sequence: nNEIDLESELKSEQVTEc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_sup_Slot2-37_1_8056_diatracer.182264.182264.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nDTGLATFTVSEWPTGTQLDIMQc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_sup_Slot2-37_1_8056_diatracer.183529.183529.4 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nNPAKIILTVPIEMGSQDc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_sup_Slot2-37_1_8056_diatracer.183744.183744.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nKAVQGGGATPVVGAVQGPVPc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_sup_Slot2-37_1_8056_diatracer.184044.184044.3 [INFO:] Please specify modification and rerun PTMProphet ... ​ [INFO:] written 34000/186751 spectrum_queries [ERROR:] Cannot initialize for sequence: nAE[172]AQLGTLAAAVAc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_sup_Slot2-37_1_8056_diatracer.187065.187065.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nDAPILC[160]C[160]C[160]C[160]WSEWSGAHFQFc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_sup_Slot2-37_1_8056_diatracer.187863.187863.4 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nSWSVPPLAPLC[160]c[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_sup_Slot2-37_1_8056_diatracer.189754.189754.2 [INFO:] Please specify modification and rerun PTMProphet ... ​ [INFO:] written 35000/186751 spectrum_queries [ERROR:] Cannot initialize for sequence: nC[160]VGSGAGTGAPDLAc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_sup_Slot2-37_1_8056_diatracer.190001.190001.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nAE[172]AQLGTLAAAVAc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_sup_Slot2-37_1_8056_diatracer.192052.192052.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nQC[160]REGQQEGPDSPETHLAGSC[160]Qc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_sup_Slot2-37_1_8056_diatracer.192492.192492.4 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nQDGSSLSVNNLAc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_sup_Slot2-37_1_8056_diatracer.193495.193495.2 [INFO:] Please specify modification and rerun PTMProphet ... ​ [INFO:] written 36000/186751 spectrum_queries [ERROR:] Cannot initialize for sequence: nLLNNPHNTSQLKIRMGc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_sup_Slot2-37_1_8056_diatracer.195559.195559.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nDLSDAGRVC[160]LGc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_sup_Slot2-37_1_8056_diatracer.198577.198577.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nAE[172]AQLGTLAAAVAc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_sup_Slot2-37_1_8056_diatracer.199528.199528.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nENVTPLPTRASc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_sup_Slot2-37_1_8056_diatracer.199578.199578.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nNEIDLESELKSEQVTEc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_sup_Slot2-37_1_8056_diatracer.199728.199728.3 [INFO:] Please specify modification and rerun PTMProphet ... ​ [INFO:] written 37000/186751 spectrum_queries [ERROR:] Cannot initialize for sequence: nTLQNENELDQc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_sup_Slot2-37_1_8056_diatracer.200895.200895.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nVTPSVTSLLNGEESTGMLNSLIWc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_sup_Slot2-37_1_8056_diatracer.202016.202016.4 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nVEIDQQQLTQQQLNGNc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_sup_Slot2-37_1_8056_diatracer.202020.202020.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nENVTPLPTRASc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_sup_Slot2-37_1_8056_diatracer.202069.202069.2 [INFO:] Please specify modification and rerun PTMProphet ... ​ [INFO:] written 38000/186751 spectrum_queries [ERROR:] Cannot initialize for sequence: nVPGEKRSPLEGc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_sup_Slot2-37_1_8056_diatracer.206352.206352.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nPNISVPKPFLGc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_sup_Slot2-37_1_8056_diatracer.206450.206450.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nNPSVSLVEERDFRPFSc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_sup_Slot2-37_1_8056_diatracer.208025.208025.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nAQPTSPFIAEFc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_sup_Slot2-37_1_8056_diatracer.208825.208825.2 [INFO:] Please specify modification and rerun PTMProphet ... ​ [INFO:] written 39000/186751 spectrum_queries [ERROR:] Cannot initialize for sequence: nEDTLLTLTPC[160]c[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_sup_Slot2-37_1_8056_diatracer.210960.210960.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nC[160]C[160]NC[160]PM[147]DSPC[160]PLLLGc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_sup_Slot2-37_1_8056_diatracer.211746.211746.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nNEIDLESELKSEQVTEc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_sup_Slot2-37_1_8056_diatracer.212192.212192.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nYDEFIHKITLPGRDYc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_sup_Slot2-37_1_8056_diatracer.212237.212237.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nWPPLSLVGAVSRSPAPPPc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_sup_Slot2-37_1_8056_diatracer.212580.212580.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nSVPMPQNSDDDLFVSNDc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_sup_Slot2-37_1_8056_diatracer.212845.212845.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nLDMSLVSc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_sup_Slot2-37_1_8056_diatracer.213435.213435.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nGPAVWSGPGAAGGGLGGRc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_sup_Slot2-37_1_8056_diatracer.215570.215570.4 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nEKPRVLPPSLc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_sup_Slot2-37_1_8056_diatracer.215628.215628.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nSAPNEEGSc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_sup_Slot2-37_1_8056_diatracer.216376.216376.2 [INFO:] Please specify modification and rerun PTMProphet ... ​ [INFO:] written 40000/186751 spectrum_queries [ERROR:] Cannot initialize for sequence: nVGQPTLLAc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_sup_Slot2-37_1_8056_diatracer.217587.217587.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nLAALGTIVGGTAIc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_sup_Slot2-37_1_8056_diatracer.218494.218494.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nINTDGKQc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_sup_Slot2-37_1_8056_diatracer.220547.220547.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nLGPRGGGTPLVDc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_sup_Slot2-37_1_8056_diatracer.221053.221053.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nHFHGTSLc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_sup_Slot2-37_1_8056_diatracer.221310.221310.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nPAGLFSLSc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_sup_Slot2-37_1_8056_diatracer.221804.221804.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nEHINLAGEPALc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_sup_Slot2-37_1_8056_diatracer.224115.224115.3 [INFO:] Please specify modification and rerun PTMProphet ... ​ [INFO:] written 41000/186751 spectrum_queries [ERROR:] Cannot initialize for sequence: nRAAPGPLEDAAPPAPGAc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_sup_Slot2-37_1_8056_diatracer.225135.225135.4 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nIYLTADNLVLNLQD[202]ESFTc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_sup_Slot2-37_1_8056_diatracer.228956.228956.2 [INFO:] Please specify modification and rerun PTMProphet ... ​ [INFO:] written 42000/186751 spectrum_queries [ERROR:] Cannot initialize for sequence: nPLATGPSSQSHQEKTTDSGLTEGIWc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_sup_Slot2-37_1_8056_diatracer.234253.234253.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nELLSTITDPSVIVMADc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_sup_Slot2-37_1_8056_diatracer.234594.234594.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nPPGGIVSLLNVFFDVQc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_sup_Slot2-37_1_8056_diatracer.234653.234653.2 [INFO:] Please specify modification and rerun PTMProphet ... ​ [INFO:] written 43000/186751 spectrum_queries [ERROR:] Cannot initialize for sequence: nLLDLPAAASSEDIERSc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_sup_Slot2-37_1_8056_diatracer.240965.240965.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nTSGEWRGGARPGPC[160]GC[160]c[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_sup_Slot2-37_1_8056_diatracer.241621.241621.2 [INFO:] Please specify modification and rerun PTMProphet ... ​ [INFO:] written 44000/186751 spectrum_queries [ERROR:] Cannot initialize for sequence: nAQTQSPHLHPHPHPSTSTPVPSSIc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_sup_Slot2-37_1_8056_diatracer.243308.243308.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nETLQELTSHC[160]DDMEc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_sup_Slot2-37_1_8056_diatracer.244700.244700.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nLGDSELPLTLWC[160]VC[160]c[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_sup_Slot2-37_1_8056_diatracer.245819.245819.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nFDDLDGTHALMVGLC[160]c[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_sup_Slot2-37_1_8056_diatracer.246075.246075.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nFDDLDGTHALMVGLC[160]c[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_sup_Slot2-37_1_8056_diatracer.247465.247465.2 [INFO:] Please specify modification and rerun PTMProphet ... ​ [INFO:] written 45000/186751 spectrum_queries [ERROR:] Cannot initialize for sequence: nLNDILEDNDEGASVAGGc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_sup_Slot2-37_1_8056_diatracer.250963.250963.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: n[43]TFNSFEGSKTC[160]VPADc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_sup_Slot2-37_1_8056_diatracer.254167.254167.2 [INFO:] Please specify modification and rerun PTMProphet ... ​ [INFO:] written 46000/186751 spectrum_queries [ERROR:] Cannot initialize for sequence: nLWTAVKGPTWTEVPEc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_sup_Slot2-37_1_8056_diatracer.257226.257226.2 [INFO:] Please specify modification and rerun PTMProphet ... ​ [INFO:] written 47000/186751 spectrum_queries [ERROR:] Cannot initialize for sequence: nNILVSDM[147]EMNEQQEc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_sup_Slot2-37_1_8056_diatracer.260872.260872.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nVTLLDASEYE[172]C[160]EVEc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_sup_Slot2-37_1_8056_diatracer.263768.263768.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nRTSALLEDQDLc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_sup_Slot2-37_1_8056_diatracer.265715.265715.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nVYLFGC[160]LLLQTFMLLSc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_sup_Slot2-37_1_8056_diatracer.265955.265955.3 [INFO:] Please specify modification and rerun PTMProphet ... ​ [INFO:] written 48000/186751 spectrum_queries [ERROR:] Cannot initialize for sequence: nGYAEVVVASENSVHKLLEc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_sup_Slot2-37_1_8056_diatracer.266901.266901.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nGYAEVVVASENSVHKLLEc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_sup_Slot2-37_1_8056_diatracer.269384.269384.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nNQMNNAMVQLGc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_sup_Slot2-37_1_8056_diatracer.270641.270641.2 [INFO:] Please specify modification and rerun PTMProphet ... ​ [INFO:] written 49000/186751 spectrum_queries [ERROR:] Cannot initialize for sequence: nELKTILPLINFKVSSAKc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_sup_Slot2-37_1_8056_diatracer.271799.271799.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nLKEGDTM[147]M[147]GQQVANQLLc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_sup_Slot2-37_1_8056_diatracer.272955.272955.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nLLSAAPSQTSVYFC[160]ASSYc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_sup_Slot2-37_1_8056_diatracer.274374.274374.3 [INFO:] Please specify modification and rerun PTMProphet ... ​ [INFO:] written 50000/186751 spectrum_queries [ERROR:] Cannot initialize for sequence: nGGLHPKPTSLVLSLLQSLSc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_sup_Slot2-37_1_8056_diatracer.276966.276966.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nAEGLM[147]LEKEVGALLLLVMc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_sup_Slot2-37_1_8056_diatracer.279427.279427.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nYLLGATVHHFPc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_sup_Slot2-37_1_8056_diatracer.280267.280267.2 [INFO:] Please specify modification and rerun PTMProphet ... ​ [INFO:] written 51000/186751 spectrum_queries [ERROR:] Cannot initialize for sequence: nGRLWDPVFAVSc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_sup_Slot2-37_1_8056_diatracer.282175.282175.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nPGTPGGTGGPAPQYc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_sup_Slot2-37_1_8056_diatracer.282422.282422.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nELKQMYNRMNSVMQDc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_sup_Slot2-37_1_8056_diatracer.283458.283458.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nPQGQGGPGGHPC[160]PVAHQQGGc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_sup_Slot2-37_1_8056_diatracer.283551.283551.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nGNM[147]NVLDVENLc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_sup_Slot2-37_1_8056_diatracer.284008.284008.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nPSFSEIASALGDSTVDSKPc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_sup_Slot2-37_1_8056_diatracer.284586.284586.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nGRLWDPVFAVSc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_sup_Slot2-37_1_8056_diatracer.284665.284665.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nNSLDSSDSDSALc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_sup_Slot2-37_1_8056_diatracer.285117.285117.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nVPAAGLC[160]GSPALPc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_sup_Slot2-37_1_8056_diatracer.285340.285340.2 [INFO:] Please specify modification and rerun PTMProphet ... ​ [INFO:] written 52000/186751 spectrum_queries [ERROR:] Cannot initialize for sequence: nGYAEVVVASENSVHKLLEc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_sup_Slot2-37_1_8056_diatracer.289257.289257.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nVAPGAERAPPPAPTARGSAGAc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_sup_Slot2-37_1_8056_diatracer.289344.289344.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nVC[160]AAVPAGWGGLGSPDAGGISc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_sup_Slot2-37_1_8056_diatracer.289388.289388.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nM[147]AENSVLTSTTGRTSLADc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_sup_Slot2-37_1_8056_diatracer.290707.290707.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nTLNDELEIIEGMKFDRc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_sup_Slot2-37_1_8056_diatracer.291050.291050.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nQLEAEDAEGLEAc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_sup_Slot2-37_1_8056_diatracer.291259.291259.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nGQGTAATAQMVNMc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_sup_Slot2-37_1_8056_diatracer.291589.291589.2 [INFO:] Please specify modification and rerun PTMProphet ... ​ [INFO:] written 53000/186751 spectrum_queries [ERROR:] Cannot initialize for sequence: n[43]ATGLGEPVYGLSEDEPGSPc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_sup_Slot2-37_1_8056_diatracer.293076.293076.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nLEMEPQEWLSWLVPC[160]c[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_sup_Slot2-37_1_8056_diatracer.293153.293153.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nNSLDSSDSDSALc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_sup_Slot2-37_1_8056_diatracer.295056.295056.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nPKSFSSC[160]KQPGc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_sup_Slot2-37_1_8056_diatracer.295894.295894.2 [INFO:] Please specify modification and rerun PTMProphet ... ​ [INFO:] written 54000/186751 spectrum_queries [ERROR:] Cannot initialize for sequence: nQTVFLYQPAALc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_sup_Slot2-37_1_8056_diatracer.297744.297744.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nGQIEDVFEQGKc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_sup_Slot2-37_1_8056_diatracer.299673.299673.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nLTGALTSQAQAILSPQSPKc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_sup_Slot2-37_1_8056_diatracer.299715.299715.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nGRLWDPVFAVSc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_sup_Slot2-37_1_8056_diatracer.302061.302061.2 [INFO:] Please specify modification and rerun PTMProphet ... ​ [INFO:] written 55000/186751 spectrum_queries [ERROR:] Cannot initialize for sequence: nGGGPPPPGLLREDc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_sup_Slot2-37_1_8056_diatracer.305524.305524.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nHLTSMATSYFGKQFLRc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_sup_Slot2-37_1_8056_diatracer.306222.306222.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: n[43]AYQIVLELHFSHC[160]AAMGAALLMLc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_sup_Slot2-37_1_8056_diatracer.306273.306273.4 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nFALGGGLHHLARAVLAGRVc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_sup_Slot2-37_1_8056_diatracer.306996.306996.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nVQALSTDEGTSFc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_sup_Slot2-37_1_8056_diatracer.307641.307641.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nNPQQHLNAQPQVTMQQc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_sup_Slot2-37_1_8056_diatracer.307809.307809.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nNNPKFLAITTDC[160]LQLLc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_sup_Slot2-37_1_8056_diatracer.307845.307845.3 [INFO:] Please specify modification and rerun PTMProphet ... ​ [INFO:] written 56000/186751 spectrum_queries [ERROR:] Cannot initialize for sequence: nLLGTAGTGEISNFc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_sup_Slot2-37_1_8056_diatracer.309164.309164.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nLATTC[160]SPFYGTGLSSPASSc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_sup_Slot2-37_1_8056_diatracer.310026.310026.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nNNPKFLAITTDC[160]LQLLc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_sup_Slot2-37_1_8056_diatracer.310336.310336.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nGGGPPPPGLLREDc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_sup_Slot2-37_1_8056_diatracer.310493.310493.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nGGLHPKPTSLVLSLLQSLSc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_sup_Slot2-37_1_8056_diatracer.311740.311740.3 [INFO:] Please specify modification and rerun PTMProphet ... ​ [INFO:] written 57000/186751 spectrum_queries [ERROR:] Cannot initialize for sequence: nFQRVLGVLSQRLEPDRc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_sup_Slot2-37_1_8056_diatracer.316947.316947.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nYWSPAQSGLAGGPGPAGC[160]ASAc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_sup_Slot2-37_1_8056_diatracer.317083.317083.3 [INFO:] Please specify modification and rerun PTMProphet ... ​ [INFO:] written 58000/186751 spectrum_queries [ERROR:] Cannot initialize for sequence: nGLPGPQGPTGPSGPc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_sup_Slot2-37_1_8056_diatracer.320292.320292.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nTDVGGGPAAGAASQGARSHSSSc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_sup_Slot2-37_1_8056_diatracer.320758.320758.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nGLPTPPPGASSASEc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_sup_Slot2-37_1_8056_diatracer.320908.320908.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nEPSHQISHSHQc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_sup_Slot2-37_1_8056_diatracer.321381.321381.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nAEGLM[147]LEKEVGALLLLVMc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_sup_Slot2-37_1_8056_diatracer.321638.321638.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nGGNELGLKEITYc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_sup_Slot2-37_1_8056_diatracer.321829.321829.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nPVTATSAAAALPTANAGTAc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_sup_Slot2-37_1_8056_diatracer.322457.322457.4 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nWLGLQGPSGGPGVc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_sup_Slot2-37_1_8056_diatracer.322472.322472.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nPYLFSLGYDSNMYLc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_sup_Slot2-37_1_8056_diatracer.323086.323086.4 [INFO:] Please specify modification and rerun PTMProphet ... ​ [INFO:] written 59000/186751 spectrum_queries [ERROR:] Cannot initialize for sequence: nLLFHLAHKEKc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_sup_Slot2-37_1_8056_diatracer.324035.324035.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nESTAGSPPPc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_sup_Slot2-37_1_8056_diatracer.324051.324051.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nTESRSVAQAGM[147]Qc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_sup_Slot2-37_1_8056_diatracer.324869.324869.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nEATFRAVC[160]QRc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_sup_Slot2-37_1_8056_diatracer.325785.325785.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nIASNAGSIAc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_sup_Slot2-37_1_8056_diatracer.326153.326153.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nPGTEPGGRc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_sup_Slot2-37_1_8056_diatracer.326203.326203.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nLPC[160]PGAAVAAEGMc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_sup_Slot2-37_1_8056_diatracer.330158.330158.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nPAAKPAAAGAc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_sup_Slot2-37_1_8056_diatracer.330271.330271.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nMLRMIILM[147]PVc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_sup_Slot2-37_1_8056_diatracer.330605.330605.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nEKFSSALRNSNc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_sup_Slot2-37_1_8056_diatracer.330638.330638.3 [INFO:] Please specify modification and rerun PTMProphet ... ​ [INFO:] written 60000/186751 spectrum_queries [ERROR:] Cannot initialize for sequence: nPEHSMGKc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_sup_Slot2-37_1_8056_diatracer.332054.332054.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nVQAPGLPGVSSQDAPASPc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_sup_Slot2-37_1_8056_diatracer.332868.332868.4 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nPVTATSAAAALPTANAGTAc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_sup_Slot2-37_1_8056_diatracer.333612.333612.4 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nLGAEDQGGVc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_sup_Slot2-37_1_8056_diatracer.336135.336135.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nIDGPQGSC[160]PWLc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_sup_Slot2-37_1_8056_diatracer.338748.338748.3 [INFO:] Please specify modification and rerun PTMProphet ... ​ [INFO:] written 61000/186751 spectrum_queries [ERROR:] Cannot initialize for sequence: nTSLASLGLc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_sup_Slot2-37_1_8056_diatracer.339199.339199.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nHLIDGDC[160]QKHc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_sup_Slot2-37_1_8056_diatracer.339686.339686.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nNAVLGGQATc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_sup_Slot2-37_1_8056_diatracer.340541.340541.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nESVQGAAQDVAGVAAC[160]LPLAQSTc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_sup_Slot2-37_1_8056_diatracer.344235.344235.2 [INFO:] Please specify modification and rerun PTMProphet ... ​ [INFO:] written 62000/186751 spectrum_queries [ERROR:] Cannot initialize for sequence: nANIRSYPPQNGVNEFETASTc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_sup_Slot2-37_1_8056_diatracer.347462.347462.2 [INFO:] Please specify modification and rerun PTMProphet ... ​ [INFO:] written 63000/186751 spectrum_queries [ERROR:] Cannot initialize for sequence: nDMLAMPSTDEQPAEQAc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_sup_Slot2-37_1_8056_diatracer.352901.352901.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nALAELFTIEGASGGSKGAAc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_sup_Slot2-37_1_8056_diatracer.353283.353283.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nASLAFC[160]VGTDLGNVVGPAc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_sup_Slot2-37_1_8056_diatracer.355741.355741.2 [INFO:] Please specify modification and rerun PTMProphet ... ​ [INFO:] written 64000/186751 spectrum_queries [ERROR:] Cannot initialize for sequence: nSYAWTQNWYC[160]VPSSc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_sup_Slot2-37_1_8056_diatracer.356917.356917.2 [INFO:] Please specify modification and rerun PTMProphet ... ​ [INFO:] written 65000/186751 spectrum_queries [ERROR:] Cannot initialize for sequence: nALEEQTLSSVVTWFWc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_sup_Slot2-37_1_8056_diatracer.365422.365422.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nGLGTEAVLAMLSYETSLc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_sup_Slot2-37_1_8056_diatracer.367914.367914.2 [INFO:] Please specify modification and rerun PTMProphet ... ​ [INFO:] written 66000/186751 spectrum_queries [ERROR:] Cannot initialize for sequence: nALEEQTLSSVVTWFWc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_sup_Slot2-37_1_8056_diatracer.370197.370197.2 [INFO:] Please specify modification and rerun PTMProphet ... ​ [INFO:] written 67000/186751 spectrum_queries [ERROR:] Cannot initialize for sequence: nSPAEC[160]REEHSKTPEERc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_sup_Slot2-37_1_8056_diatracer.377990.377990.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nAAIEETLLLESSc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_sup_Slot2-37_1_8056_diatracer.378455.378455.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nSELHIENLNM[147]Ec[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_sup_Slot2-37_1_8056_diatracer.379378.379378.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nVARWLGVVAHTC[160]NPSTLGGc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_sup_Slot2-37_1_8056_diatracer.379736.379736.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nYPPSPAKMTQHc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_sup_Slot2-37_1_8056_diatracer.379988.379988.2 [INFO:] Please specify modification and rerun PTMProphet ... ​ [INFO:] written 68000/186751 spectrum_queries [ERROR:] Cannot initialize for sequence: nGGGGGNGKAAATAAVAAc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_sup_Slot2-37_1_8056_diatracer.384066.384066.2 [INFO:] Please specify modification and rerun PTMProphet ... ​ [INFO:] written 69000/186751 spectrum_queries [ERROR:] Cannot initialize for sequence: nQVEVDAQQC[160]MLc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_sup_Slot2-37_1_8056_diatracer.387826.387826.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nYEDLC[160]AFYHPGVNGPPLc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_sup_Slot2-37_1_8056_diatracer.389827.389827.3 [INFO:] Please specify modification and rerun PTMProphet ... ​ [INFO:] written 70000/186751 spectrum_queries [ERROR:] Cannot initialize for sequence: nEGAGSANPGAAAAVALAAALAPSAc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_sup_Slot2-37_1_8056_diatracer.391012.391012.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nIMHGVAPC[160]SGGSQc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_sup_Slot2-37_1_8056_diatracer.391805.391805.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nSPAEC[160]REEHSKTPEERc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_sup_Slot2-37_1_8056_diatracer.394609.394609.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nQQQQHRLENLHGAMYTc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_sup_Slot2-37_1_8056_diatracer.395100.395100.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nLLNNGDKWEAEIAANIQADYLYRc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_sup_Slot2-37_1_8056_diatracer.395840.395840.4 [INFO:] Please specify modification and rerun PTMProphet ... ​ [INFO:] written 71000/186751 spectrum_queries [ERROR:] Cannot initialize for sequence: nTFSQEAC[160]PTNFc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_sup_Slot2-37_1_8056_diatracer.396159.396159.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nIVSVGDDQEIHIYDC[160]PIc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_sup_Slot2-37_1_8056_diatracer.398891.398891.3 [INFO:] Please specify modification and rerun PTMProphet ... ​ [INFO:] written 72000/186751 spectrum_queries [ERROR:] Cannot initialize for sequence: nDTIWSSLGM[147]LLC[160]PGLGESc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_sup_Slot2-37_1_8056_diatracer.401900.401900.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nPDPHAC[160]DGAGDGGPESGSPAEc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_sup_Slot2-37_1_8056_diatracer.403751.403751.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nSWGSWC[160]PSVGDRSFIC[160]FNALSPPc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_sup_Slot2-37_1_8056_diatracer.404055.404055.4 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nLPLISVALVQGWc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_sup_Slot2-37_1_8056_diatracer.405534.405534.2 [INFO:] Please specify modification and rerun PTMProphet ... ​ [INFO:] written 73000/186751 spectrum_queries [ERROR:] Cannot initialize for sequence: nYEDLC[160]AFYHPGVNGPPLc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_sup_Slot2-37_1_8056_diatracer.408801.408801.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nDGLVTPEEFM[147]NYYAGVSAc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_sup_Slot2-37_1_8056_diatracer.409772.409772.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nQLTLGAYKHETc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_sup_Slot2-37_1_8056_diatracer.410865.410865.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nIYC[160]HILDPTKc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_sup_Slot2-37_1_8056_diatracer.410888.410888.2 [INFO:] Please specify modification and rerun PTMProphet ... ​ [INFO:] written 74000/186751 spectrum_queries [ERROR:] Cannot initialize for sequence: nEMAHLEGLMKDLNAITTAc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_sup_Slot2-37_1_8056_diatracer.411591.411591.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nALGEGAELGARGQSLPM[147]GLLc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_sup_Slot2-37_1_8056_diatracer.413826.413826.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nLIATLSAMEGEFc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_sup_Slot2-37_1_8056_diatracer.414109.414109.2 [INFO:] Please specify modification and rerun PTMProphet ... ​ [INFO:] written 75000/186751 spectrum_queries [ERROR:] Cannot initialize for sequence: nRSGASILQAGC[160]UGc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_sup_Slot2-37_1_8056_diatracer.418884.418884.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nSPTQSQITVNGNSc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_sup_Slot2-37_1_8056_diatracer.419270.419270.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nYSNAVPAVQDMNKIGFDNc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_sup_Slot2-37_1_8056_diatracer.419404.419404.3 [INFO:] Please specify modification and rerun PTMProphet ... ​ [INFO:] written 76000/186751 spectrum_queries [ERROR:] Cannot initialize for sequence: nTPSGLLGC[160]LIPC[160]LGSWTALDQTSLGc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_sup_Slot2-37_1_8056_diatracer.422912.422912.4 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nVPGPPEASGDEGDEEKLPEAc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_sup_Slot2-37_1_8056_diatracer.424086.424086.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nQMAAAMPSTTPRc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_sup_Slot2-37_1_8056_diatracer.427203.427203.2 [INFO:] Please specify modification and rerun PTMProphet ... ​ [INFO:] written 77000/186751 spectrum_queries [ERROR:] Cannot initialize for sequence: nKSPVGNFVGSNVVc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_sup_Slot2-37_1_8056_diatracer.429463.429463.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nSLGPLGIGPLHGRc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_sup_Slot2-37_1_8056_diatracer.430570.430570.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nDHILEQFVLNTETLNWc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_sup_Slot2-37_1_8056_diatracer.430908.430908.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nC[160]GPALTGSAc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_sup_Slot2-37_1_8056_diatracer.432533.432533.2 [INFO:] Please specify modification and rerun PTMProphet ... ​ [INFO:] written 78000/186751 spectrum_queries [ERROR:] Cannot initialize for sequence: nGTPLAVTPEMERc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_sup_Slot2-37_1_8056_diatracer.432797.432797.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nGRVGGDAAQEPKAc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_sup_Slot2-37_1_8056_diatracer.433315.433315.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nPEGVPRIDc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_sup_Slot2-37_1_8056_diatracer.434199.434199.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nQPVSM[147]QNGc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_sup_Slot2-37_1_8056_diatracer.435305.435305.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nLMNELVEGAEELc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_sup_Slot2-37_1_8056_diatracer.435504.435504.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nSGPSPSSKSGc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_sup_Slot2-37_1_8056_diatracer.435629.435629.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nAALAAEGDPc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_sup_Slot2-37_1_8056_diatracer.435975.435975.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nITKNC[160]VNc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_sup_Slot2-37_1_8056_diatracer.436880.436880.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nGIAGSEEAKc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_sup_Slot2-37_1_8056_diatracer.437419.437419.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nVC[160]FVAQTGVQWc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_sup_Slot2-37_1_8056_diatracer.437810.437810.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nLGSPKLMSc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_sup_Slot2-37_1_8056_diatracer.437935.437935.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nSAAIAAAM[147]SAc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_sup_Slot2-37_1_8056_diatracer.437947.437947.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nAINC[160]PEGKc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_sup_Slot2-37_1_8056_diatracer.438370.438370.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nAAPAGPVGPGAc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_sup_Slot2-37_1_8056_diatracer.438903.438903.2 [INFO:] Please specify modification and rerun PTMProphet ... ​ [INFO:] written 79000/186751 spectrum_queries [ERROR:] Cannot initialize for sequence: nEGAGELEALc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_sup_Slot2-37_1_8056_diatracer.439540.439540.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nEGAEVAPGQc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_sup_Slot2-37_1_8056_diatracer.441329.441329.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nGPALPLLRc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_sup_Slot2-37_1_8056_diatracer.441923.441923.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nGPALPLLRc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_sup_Slot2-37_1_8056_diatracer.442122.442122.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nDFLKSHELPSHPPPSSc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_sup_Slot2-37_1_8056_diatracer.442215.442215.4 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nLLPVTTEGc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_sup_Slot2-37_1_8056_diatracer.443226.443226.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nLSGNNLHNASIPEc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_sup_Slot2-37_1_8056_diatracer.443739.443739.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nTLGIQIHFSVGSc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_sup_Slot2-37_1_8056_diatracer.443980.443980.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nELQNTAVAc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_sup_Slot2-37_1_8056_diatracer.444884.444884.2 [INFO:] Please specify modification and rerun PTMProphet ... ​ [INFO:] written 80000/186751 spectrum_queries [ERROR:] Cannot initialize for sequence: nAGGAELVAGEc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_sup_Slot2-37_1_8056_diatracer.445587.445587.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nVLTSANILYDTSNILDc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_sup_Slot2-37_1_8056_diatracer.445861.445861.4 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nGPALPLLRc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_sup_Slot2-37_1_8056_diatracer.446080.446080.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nGPAPLSVTMAPNTGc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_sup_Slot2-37_1_8056_diatracer.448065.448065.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nESTAGSPPPc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_sup_Slot2-37_1_8056_diatracer.449907.449907.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nGPPQGPLPGAENIVc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_sup_Slot2-37_1_8056_diatracer.449967.449967.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nQGSSPPPPQSSQEc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_sup_Slot2-37_1_8056_diatracer.451594.451594.3 [INFO:] Please specify modification and rerun PTMProphet ... ​ [INFO:] written 81000/186751 spectrum_queries [ERROR:] Cannot initialize for sequence: nQGLGVESGEc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_sup_Slot2-37_1_8056_diatracer.452315.452315.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nGVDVNNAVVc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_sup_Slot2-37_1_8056_diatracer.452657.452657.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nQAPSVSPGAc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_sup_Slot2-37_1_8056_diatracer.453106.453106.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nWLSGNMFc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_sup_Slot2-37_1_8056_diatracer.453171.453171.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nGASANQEKGc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_sup_Slot2-37_1_8056_diatracer.453362.453362.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nGVDVNNAVVc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_sup_Slot2-37_1_8056_diatracer.453984.453984.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nGHSGLQPRGFLSc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_sup_Slot2-37_1_8056_diatracer.454457.454457.3 [INFO:] Please specify modification and rerun PTMProphet ... ​ [INFO:] written 82000/186751 spectrum_queries [ERROR:] Cannot initialize for sequence: nGLAAAALGALc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_sup_Slot2-37_1_8056_diatracer.460225.460225.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nPQAHSSASGc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_sup_Slot2-37_1_8056_diatracer.460639.460639.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nGGSYSQAASSDSAQGSD[158]VSLTAC[160]c[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_sup_Slot2-37_1_8056_diatracer.463916.463916.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nGGSYSQAASSDSAQGSD[158]VSLTAC[160]c[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_sup_Slot2-37_1_8056_diatracer.464117.464117.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nNNLSFIETSALDSTNVE[172]EAFc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_sup_Slot2-37_1_8056_diatracer.464940.464940.2 [INFO:] Please specify modification and rerun PTMProphet ... ​ [INFO:] written 83000/186751 spectrum_queries [ERROR:] Cannot initialize for sequence: nNNLSFIETSALDSTNVE[172]EAFc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_sup_Slot2-37_1_8056_diatracer.465543.465543.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nNNLSFIETSALDSTNVE[172]EAFc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_sup_Slot2-37_1_8056_diatracer.466144.466144.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nNNLSFIETSALDSTNVE[172]EAFc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_sup_Slot2-37_1_8056_diatracer.466547.466547.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nGELGAGTASILSC[160]RPLKGEPGVGFEEPGENC[160]APc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_sup_Slot2-37_1_8056_diatracer.466781.466781.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nNHWPIDESSQM[147]SDLPc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_sup_Slot2-37_1_8056_diatracer.468368.468368.2 [INFO:] Please specify modification and rerun PTMProphet ... ​ [INFO:] written 84000/186751 spectrum_queries [ERROR:] Cannot initialize for sequence: nILQDEDM[147]IELGSMHASc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_sup_Slot2-37_1_8056_diatracer.472230.472230.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nVEELYDSLLQAIAFYELAVFDSQPc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_sup_Slot2-37_1_8056_diatracer.472995.472995.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nAVHSSWQAPPSLNQPVSc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_sup_Slot2-37_1_8056_diatracer.473484.473484.2 [INFO:] Please specify modification and rerun PTMProphet ... ​ [INFO:] written 85000/186751 spectrum_queries [ERROR:] Cannot initialize for sequence: nILQDEDM[147]IELGSMHASc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_sup_Slot2-37_1_8056_diatracer.477616.477616.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nGVGGAGFVAVRYDNSQEPc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_sup_Slot2-37_1_8056_diatracer.481369.481369.2 [INFO:] Please specify modification and rerun PTMProphet ... ​ [INFO:] written 86000/186751 spectrum_queries [ERROR:] Cannot initialize for sequence: nLAQDPFPLYPGEVLEKc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_sup_Slot2-37_1_8056_diatracer.483595.483595.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nESSEEEYDSGVEEEGWPRQADAANSc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_sup_Slot2-37_1_8056_diatracer.483868.483868.3 [INFO:] Please specify modification and rerun PTMProphet ... ​ [INFO:] written 87000/186751 spectrum_queries [ERROR:] Cannot initialize for sequence: nLINPDGSESGC[160]GGWGHMMGDEGSALAHc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_sup_Slot2-37_1_8056_diatracer.490477.490477.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nMSPGYLEVFADEc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_sup_Slot2-37_1_8056_diatracer.492025.492025.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nPTGYVTFTVSGYPTEVSHTc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_sup_Slot2-37_1_8056_diatracer.492840.492840.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nDNELMMNWHLAc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_sup_Slot2-37_1_8056_diatracer.493009.493009.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nELPSPAAQPQSVASc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_sup_Slot2-37_1_8056_diatracer.493350.493350.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nDANNTDAENQAKEPVSNQDc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_sup_Slot2-37_1_8056_diatracer.493443.493443.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nPVNSAALSPNYDHVLPFGLc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_sup_Slot2-37_1_8056_diatracer.494294.494294.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nPNSVSTAAGKEVSDc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_sup_Slot2-37_1_8056_diatracer.494550.494550.2 [INFO:] Please specify modification and rerun PTMProphet ... ​ [INFO:] written 88000/186751 spectrum_queries [ERROR:] Cannot initialize for sequence: nLVC[160]VGPMFLEGSPGEGTVLSc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_sup_Slot2-37_1_8056_diatracer.496452.496452.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nDETRTLEFRRc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_sup_Slot2-37_1_8056_diatracer.499348.499348.2 [INFO:] Please specify modification and rerun PTMProphet ... ​ [INFO:] written 89000/186751 spectrum_queries [ERROR:] Cannot initialize for sequence: nGFLAYYQAVGLWc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_sup_Slot2-37_1_8056_diatracer.499932.499932.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nVGSHPEGGASWLSTAANFLSRSFYWc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_sup_Slot2-37_1_8056_diatracer.501329.501329.4 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nQASQVFTAEKIPc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_sup_Slot2-37_1_8056_diatracer.503279.503279.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nSGGLPATAGGGARLSVc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_sup_Slot2-37_1_8056_diatracer.503752.503752.2 [INFO:] Please specify modification and rerun PTMProphet ... ​ [INFO:] written 90000/186751 spectrum_queries [ERROR:] Cannot initialize for sequence: nENLDSHLPPSQNTSELNTAc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_sup_Slot2-37_1_8056_diatracer.505786.505786.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nLC[160]ELLLNLDTKc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_sup_Slot2-37_1_8056_diatracer.506262.506262.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nEALSGVTSHGLSC[160]c[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_sup_Slot2-37_1_8056_diatracer.507839.507839.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nGPNHAVSTAC[160]TTGAHAVGDSFc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_sup_Slot2-37_1_8056_diatracer.508900.508900.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nKEGVYDVPKSQPc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_sup_Slot2-37_1_8056_diatracer.509078.509078.2 [INFO:] Please specify modification and rerun PTMProphet ... ​ [INFO:] written 91000/186751 spectrum_queries [ERROR:] Cannot initialize for sequence: nSELHIENLNMEc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_sup_Slot2-37_1_8056_diatracer.510466.510466.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nELPSPAAQPQSVASc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_sup_Slot2-37_1_8056_diatracer.511191.511191.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nDKAVEPDVDPRYVLSPDPGc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_sup_Slot2-37_1_8056_diatracer.511510.511510.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nAADRMTVAVADHLPSPC[160]SRc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_sup_Slot2-37_1_8056_diatracer.514321.514321.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nITDNEARMIDILSSELSHc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_sup_Slot2-37_1_8056_diatracer.515225.515225.3 [INFO:] Please specify modification and rerun PTMProphet ... ​ [INFO:] written 92000/186751 spectrum_queries [ERROR:] Cannot initialize for sequence: nILDPFIIRTAAYc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_sup_Slot2-37_1_8056_diatracer.516065.516065.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nFSEELGAMDTSAAc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_sup_Slot2-37_1_8056_diatracer.517418.517418.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nEAGGVTTNRREDEEEDEGNc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_sup_Slot2-37_1_8056_diatracer.518032.518032.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nLLPGEPFPDSDPAc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_sup_Slot2-37_1_8056_diatracer.518461.518461.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nGVQVPVSQPPTPTc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_sup_Slot2-37_1_8056_diatracer.518745.518745.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nEALSGVTSHGLSC[160]c[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_sup_Slot2-37_1_8056_diatracer.518990.518990.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nITDNEARMIDILSSELSHc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_sup_Slot2-37_1_8056_diatracer.519688.519688.3 [INFO:] Please specify modification and rerun PTMProphet ... ​ [INFO:] written 93000/186751 spectrum_queries [ERROR:] Cannot initialize for sequence: nLEAVRRMLGISPc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_sup_Slot2-37_1_8056_diatracer.522176.522176.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nELGAPVRNAPLNTDLELFPc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_sup_Slot2-37_1_8056_diatracer.522758.522758.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nLFAGADAVVHEVPAc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_sup_Slot2-37_1_8056_diatracer.522825.522825.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nVGSHPEGGASWLSTAANFLSRSFYWc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_sup_Slot2-37_1_8056_diatracer.523639.523639.4 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nQKPSGPVLQLALC[160]FVVLFQLPLVPKc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_sup_Slot2-37_1_8056_diatracer.524237.524237.4 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nNPEDPTEVPGGFLSDLNLHc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_sup_Slot2-37_1_8056_diatracer.524467.524467.3 [INFO:] Please specify modification and rerun PTMProphet ... ​ [INFO:] written 94000/186751 spectrum_queries [ERROR:] Cannot initialize for sequence: nHYAGDVVSSWNLLSYPQHc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_sup_Slot2-37_1_8056_diatracer.528392.528392.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nAWTEQLPKASGPPc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_sup_Slot2-37_1_8056_diatracer.529116.529116.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nEALSGVTSHGLSC[160]c[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_sup_Slot2-37_1_8056_diatracer.530147.530147.2 [INFO:] Please specify modification and rerun PTMProphet ... ​ [INFO:] written 95000/186751 spectrum_queries [ERROR:] Cannot initialize for sequence: nESVTATPAAAAVC[160]HVPSPPEAc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_sup_Slot2-37_1_8056_diatracer.531533.531533.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nGPEGSVTGELGPGNKc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_sup_Slot2-37_1_8056_diatracer.534142.534142.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nGLVDSFGVLWEEc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_sup_Slot2-37_1_8056_diatracer.534340.534340.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nVLAQADHELHGAQLSLRPAc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_sup_Slot2-37_1_8056_diatracer.534780.534780.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nLC[160]ELLLNLDTKc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_sup_Slot2-37_1_8056_diatracer.535272.535272.2 [INFO:] Please specify modification and rerun PTMProphet ... ​ [INFO:] written 96000/186751 spectrum_queries [ERROR:] Cannot initialize for sequence: nQSGLAGGGPPAGC[160]ASAc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_sup_Slot2-37_1_8056_diatracer.536591.536591.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nPLGDWSYAYM[147]Qc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_sup_Slot2-37_1_8056_diatracer.540328.540328.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nEALSGVTSHGLSC[160]c[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_sup_Slot2-37_1_8056_diatracer.541318.541318.2 [INFO:] Please specify modification and rerun PTMProphet ... ​ [INFO:] written 97000/186751 spectrum_queries [ERROR:] Cannot initialize for sequence: nSLPQTGNTQVAQSc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_sup_Slot2-37_1_8056_diatracer.542186.542186.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nPLGDWSYAYM[147]Qc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_sup_Slot2-37_1_8056_diatracer.542563.542563.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nPPQTQSSGLc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_sup_Slot2-37_1_8056_diatracer.543563.543563.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nKIWLLISQNGGAIc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_sup_Slot2-37_1_8056_diatracer.543822.543822.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nQLFTVTLIVTRIKMAKc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_sup_Slot2-37_1_8056_diatracer.544310.544310.4 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nGVGAVAAAAAAAc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_sup_Slot2-37_1_8056_diatracer.544401.544401.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nIFLEGANGAPAHTVc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_sup_Slot2-37_1_8056_diatracer.544738.544738.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nVSC[160]LAASIPc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_sup_Slot2-37_1_8056_diatracer.545505.545505.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nSLPQAKGPGLQEPPc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_sup_Slot2-37_1_8056_diatracer.545929.545929.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nSSLGPTGASHc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_sup_Slot2-37_1_8056_diatracer.546891.546891.2 [INFO:] Please specify modification and rerun PTMProphet ... ​ [INFO:] written 98000/186751 spectrum_queries [ERROR:] Cannot initialize for sequence: nQVTSSGVSHc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_sup_Slot2-37_1_8056_diatracer.548285.548285.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nC[160]LFLGELKDDINc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_sup_Slot2-37_1_8056_diatracer.549628.549628.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nELEAAPVQVYDKc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_sup_Slot2-37_1_8056_diatracer.550801.550801.3 [INFO:] Please specify modification and rerun PTMProphet ... ​ [INFO:] written 99000/186751 spectrum_queries [ERROR:] Cannot initialize for sequence: nPISMVGAEQc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_sup_Slot2-37_1_8056_diatracer.556163.556163.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nVHVQMEPVc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_sup_Slot2-37_1_8056_diatracer.556471.556471.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nGTAAAAATGTAAc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_sup_Slot2-37_1_8056_diatracer.557853.557853.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nADSQLQPHGGDLTc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_sup_Slot2-37_1_8056_diatracer.558894.558894.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nPPAGALGTPAAc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_sup_Slot2-37_1_8056_diatracer.559174.559174.2 [INFO:] Please specify modification and rerun PTMProphet ... ​ [INFO:] written 100000/186751 spectrum_queries [ERROR:] Cannot initialize for sequence: nPIQPDTDQHLQVc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_sup_Slot2-37_1_8056_diatracer.561599.561599.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nMTDTVFSNSSNRc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_sup_Slot2-37_1_8056_diatracer.562493.562493.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nC[160]LGPLVSKc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_sup_Slot2-37_1_8056_diatracer.562611.562611.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nSEIDLNSVAANKPc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_sup_Slot2-37_1_8056_diatracer.562690.562690.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nSLSFGGLNVc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_sup_Slot2-37_1_8056_diatracer.563433.563433.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nQANGEDIDVTSNDc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_sup_Slot2-37_1_8056_diatracer.564778.564778.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: n[43]SEVLPADSGc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_sup_Slot2-37_1_8056_diatracer.565993.565993.2 [INFO:] Please specify modification and rerun PTMProphet ... ​ [INFO:] written 101000/186751 spectrum_queries [ERROR:] Cannot initialize for sequence: nDDPVLETSc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_sup_Slot2-37_1_8056_diatracer.569554.569554.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nSEIDLNSVAANKPc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_sup_Slot2-37_1_8056_diatracer.569558.569558.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nPQPSGPAPSSc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_sup_Slot2-37_1_8056_diatracer.569651.569651.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nC[160]LFLGELKDDINc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_sup_Slot2-37_1_8056_diatracer.570231.570231.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nQVTSSGVSHc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_sup_Slot2-37_1_8056_diatracer.570625.570625.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nLDGASWGVSc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_sup_Slot2-37_1_8056_diatracer.571592.571592.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nM[147]AGPTDPTSc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_sup_Slot2-37_1_8056_diatracer.571626.571626.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nAVAEDPVAAAc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_sup_Slot2-37_1_8056_diatracer.572673.572673.2 [INFO:] Please specify modification and rerun PTMProphet ... ​ [INFO:] written 102000/186751 spectrum_queries [ERROR:] Cannot initialize for sequence: nIVPVEAGPPc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_sup_Slot2-37_1_8056_diatracer.572963.572963.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nVSFPTPTLAPSPFc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_sup_Slot2-37_1_8056_diatracer.573265.573265.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nC[160]LFLGELKDDINc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_sup_Slot2-37_1_8056_diatracer.573671.573671.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nSQAEPRAAAc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_sup_Slot2-37_1_8056_diatracer.577538.577538.2 [INFO:] Please specify modification and rerun PTMProphet ... ​ [INFO:] written 103000/186751 spectrum_queries [ERROR:] Cannot initialize for sequence: nVYNGLQGYc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_sup_Slot2-37_1_8056_diatracer.581226.581226.2 [INFO:] Please specify modification and rerun PTMProphet ... ​ [INFO:] written 104000/186751 spectrum_queries [ERROR:] Cannot initialize for sequence: nLFEDSEEVDVDGNADDDc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_sup_Slot2-37_1_8056_diatracer.588162.588162.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nLQQVLQM[147]ESHIQSTSDRIQFNDLQSLLC[160]ATLQc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_sup_Slot2-37_1_8056_diatracer.589228.589228.4 [INFO:] Please specify modification and rerun PTMProphet ... ​ [INFO:] written 105000/186751 spectrum_queries [ERROR:] Cannot initialize for sequence: nKEISEVAFVHEGVAPLEc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_sup_Slot2-37_1_8056_diatracer.592606.592606.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nAQTKDMGAQAPWVPEAGPc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_sup_Slot2-37_1_8056_diatracer.593422.593422.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nDAPMQAGVPWLLLTPSGSc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_sup_Slot2-37_1_8056_diatracer.596106.596106.2 [INFO:] Please specify modification and rerun PTMProphet ... ​ [INFO:] written 107000/186751 spectrum_queries [ERROR:] Cannot initialize for sequence: nNVSEIIATIMETLKM[147]Kc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_sup_Slot2-37_1_8056_diatracer.604006.604006.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nMSTPTDPGAc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_sup_Slot2-37_1_8056_diatracer.605953.605953.1 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nKETLQELTSHC[160]DDMEc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_sup_Slot2-37_1_8056_diatracer.606885.606885.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nVTM[147]TLC[160]LGGTVYSLYSLGWASFPRNc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_sup_Slot2-37_1_8056_diatracer.607175.607175.3 [INFO:] Please specify modification and rerun PTMProphet ... ​ [INFO:] written 108000/186751 spectrum_queries [ERROR:] Cannot initialize for sequence: nEQEELALFVAARc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_sup_Slot2-37_1_8056_diatracer.613235.613235.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nNTTMLSKTSTSYVc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_sup_Slot2-37_1_8056_diatracer.613851.613851.2 [INFO:] Please specify modification and rerun PTMProphet ... ​ [INFO:] written 109000/186751 spectrum_queries [ERROR:] Cannot initialize for sequence: nHSLSPSTSAAPNAISGSPEPETAEVVVTAc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_sup_Slot2-37_1_8056_diatracer.614510.614510.4 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nLLSSAFDEVYPALPSDVQTAc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_sup_Slot2-37_1_8056_diatracer.614576.614576.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nPALPDPALPLQMLc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_sup_Slot2-37_1_8056_diatracer.617286.617286.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nVTRGSVDGLGLNVGSc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_sup_Slot2-37_1_8056_diatracer.617741.617741.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nIAFC[160]QGFDKQVDc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_sup_Slot2-37_1_8056_diatracer.619572.619572.2 [INFO:] Please specify modification and rerun PTMProphet ... ​ [INFO:] written 110000/186751 spectrum_queries [ERROR:] Cannot initialize for sequence: nSPASDTYIVFGE[172]Ac[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_sup_Slot2-37_1_8056_diatracer.620259.620259.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nTEVSTVSSTQVGPNc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_sup_Slot2-37_1_8056_diatracer.620730.620730.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nLLEAHEEQNVDSc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_sup_Slot2-37_1_8056_diatracer.621696.621696.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nYQLFFFSFLWc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_sup_Slot2-37_1_8056_diatracer.622319.622319.2 [INFO:] Please specify modification and rerun PTMProphet ... ​ [INFO:] written 111000/186751 spectrum_queries [ERROR:] Cannot initialize for sequence: nGALSAMSRDNELMMNWHLAc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_sup_Slot2-37_1_8056_diatracer.625522.625522.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nC[160]HVQGC[160]QVQSEIYGHLTVc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_sup_Slot2-37_1_8056_diatracer.627934.627934.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nEFIHLNINEFIHLTM[147]NIc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_sup_Slot2-37_1_8056_diatracer.629868.629868.3 [INFO:] Please specify modification and rerun PTMProphet ... ​ [INFO:] written 112000/186751 spectrum_queries [ERROR:] Cannot initialize for sequence: nLELSWGEDPLSGVc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_sup_Slot2-37_1_8056_diatracer.631083.631083.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nPSNEEATAAANGNGSc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_sup_Slot2-37_1_8056_diatracer.632145.632145.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: n[43]VASAGSLFGGMVLKc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_sup_Slot2-37_1_8056_diatracer.633762.633762.2 [INFO:] Please specify modification and rerun PTMProphet ... ​ [INFO:] written 113000/186751 spectrum_queries [ERROR:] Cannot initialize for sequence: nGGIDHINALDENLc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_sup_Slot2-37_1_8056_diatracer.636143.636143.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nASSAFNAVGSEVDTMKSSDTRc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_sup_Slot2-37_1_8056_diatracer.638133.638133.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nQEQSPELPVDPLAAPSAM[147]AAAAc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_sup_Slot2-37_1_8056_diatracer.638667.638667.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nQSGDDVRDFEWDPSLTEVAc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_sup_Slot2-37_1_8056_diatracer.640504.640504.3 [INFO:] Please specify modification and rerun PTMProphet ... ​ [INFO:] written 114000/186751 spectrum_queries [ERROR:] Cannot initialize for sequence: nTHHSGEC[160]FQLPEGLSAQGPGc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_sup_Slot2-37_1_8056_diatracer.641793.641793.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nNLDKLSSSLYLEKPVSAVAPc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_sup_Slot2-37_1_8056_diatracer.643371.643371.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nVTAIWSGWTHLVc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_sup_Slot2-37_1_8056_diatracer.643731.643731.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nSPASDTYIVFGE[172]Ac[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_sup_Slot2-37_1_8056_diatracer.644830.644830.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nQEAHPTEEPHNQc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_sup_Slot2-37_1_8056_diatracer.645981.645981.2 [INFO:] Please specify modification and rerun PTMProphet ... ​ [INFO:] written 115000/186751 spectrum_queries [ERROR:] Cannot initialize for sequence: nQALSPKVKAPSALGc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_sup_Slot2-37_1_8056_diatracer.647668.647668.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nLLEAHEEQNVDSc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_sup_Slot2-37_1_8056_diatracer.648333.648333.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nTHHSGEC[160]FQLPEGLSAQGPGc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_sup_Slot2-37_1_8056_diatracer.649999.649999.3 [INFO:] Please specify modification and rerun PTMProphet ... ​ [INFO:] written 116000/186751 spectrum_queries [ERROR:] Cannot initialize for sequence: nEWLIAGFGLFGTVc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_sup_Slot2-37_1_8056_diatracer.653847.653847.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nAYQHGGVTGLSQYc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_sup_Slot2-37_1_8056_diatracer.654498.654498.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nGGDRPTQLLPQSGNGSQARAEc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_sup_Slot2-37_1_8056_diatracer.655188.655188.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nKLELDVPAAc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_sup_Slot2-37_1_8056_diatracer.655730.655730.2 [INFO:] Please specify modification and rerun PTMProphet ... ​ [INFO:] written 117000/186751 spectrum_queries [ERROR:] Cannot initialize for sequence: nVGSVLE[172]EVAAAAEGGVc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_sup_Slot2-37_1_8056_diatracer.656703.656703.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nKLELDVPAAc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_sup_Slot2-37_1_8056_diatracer.657792.657792.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nLLPPYHSLINNFc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_sup_Slot2-37_1_8056_diatracer.658337.658337.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nLAILENTVVc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_sup_Slot2-37_1_8056_diatracer.660599.660599.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nSWTGGPGTEPc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_sup_Slot2-37_1_8056_diatracer.661105.661105.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nDSLADDEGKc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_sup_Slot2-37_1_8056_diatracer.661655.661655.2 [INFO:] Please specify modification and rerun PTMProphet ... ​ [INFO:] written 118000/186751 spectrum_queries [ERROR:] Cannot initialize for sequence: nLAILENTVVc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_sup_Slot2-37_1_8056_diatracer.662346.662346.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nVSNQRTDIGAQIKc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_sup_Slot2-37_1_8056_diatracer.662396.662396.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nFTDKRIGYLGAMLc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_sup_Slot2-37_1_8056_diatracer.662702.662702.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nAPAPPQSGSC[160]c[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_sup_Slot2-37_1_8056_diatracer.664527.664527.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nLC[160]PADPDWIAFIHSNDIc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_sup_Slot2-37_1_8056_diatracer.664545.664545.4 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nKLC[160]MMPLDSEVHc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_sup_Slot2-37_1_8056_diatracer.665326.665326.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nTSGNSYTQIc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_sup_Slot2-37_1_8056_diatracer.666482.666482.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nDPTRQDAALEGSTEc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_sup_Slot2-37_1_8056_diatracer.666796.666796.3 [INFO:] Please specify modification and rerun PTMProphet ... ​ [INFO:] written 119000/186751 spectrum_queries [ERROR:] Cannot initialize for sequence: nNM[147]VPQQALVIRNGc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_sup_Slot2-37_1_8056_diatracer.670147.670147.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nGVLALNPLLc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_sup_Slot2-37_1_8056_diatracer.670154.670154.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nLHGEELRAGSDTRc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_sup_Slot2-37_1_8056_diatracer.670795.670795.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nHILDGTAEEc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_sup_Slot2-37_1_8056_diatracer.671090.671090.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nYQSLAMAANHGPPPGc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_sup_Slot2-37_1_8056_diatracer.671413.671413.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nVAAGVAGAAGGGGSIGASKc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_sup_Slot2-37_1_8056_diatracer.672103.672103.3 [INFO:] Please specify modification and rerun PTMProphet ... ​ [INFO:] written 120000/186751 spectrum_queries [ERROR:] Cannot initialize for sequence: nATLTASPLGASc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_sup_Slot2-37_1_8056_diatracer.675507.675507.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nTKTVTLEYc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_sup_Slot2-37_1_8056_diatracer.676289.676289.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nDEAGKFFGTc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_sup_Slot2-37_1_8056_diatracer.676741.676741.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nYKEETIEKM[147]QEc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_sup_Slot2-37_1_8056_diatracer.676897.676897.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nM[147]VAPAEDDVTQSEc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_sup_Slot2-37_1_8056_diatracer.678075.678075.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nNASFYANSSTLYYc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_sup_Slot2-37_1_8056_diatracer.679330.679330.3 [INFO:] Please specify modification and rerun PTMProphet ... ​ [INFO:] written 121000/186751 spectrum_queries [ERROR:] Cannot initialize for sequence: nLHLC[160]EEKAKSYSc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_sup_Slot2-37_1_8056_diatracer.680519.680519.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nLAILENTVVc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_sup_Slot2-37_1_8056_diatracer.681117.681117.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nYVSDLELSAc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_sup_Slot2-37_1_8056_diatracer.681973.681973.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nLVDPQEMLRLLGHc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_sup_Slot2-37_1_8056_diatracer.681989.681989.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nQAPDLYQRLVHLIPDKc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_sup_Slot2-37_1_8056_diatracer.682442.682442.4 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nDITGTLSNPc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_sup_Slot2-37_1_8056_diatracer.682541.682541.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nNASFYANSSTLYYc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_sup_Slot2-37_1_8056_diatracer.683434.683434.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nLWDRAYVc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_sup_Slot2-37_1_8056_diatracer.684818.684818.2 [INFO:] Please specify modification and rerun PTMProphet ... ​ [INFO:] written 122000/186751 spectrum_queries [ERROR:] Cannot initialize for sequence: nSGLAWGAPRc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_sup_Slot2-37_1_8056_diatracer.686537.686537.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nQEAHPTEEPHNQc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_sup_Slot2-37_1_8056_diatracer.686587.686587.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nPALPEELSAc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_sup_Slot2-37_1_8056_diatracer.687099.687099.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nPVAGLDIPPASPWVc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_sup_Slot2-37_1_8056_diatracer.688833.688833.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nERQIESYc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_sup_Slot2-37_1_8056_diatracer.688896.688896.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nLHQDAPDLAc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_sup_Slot2-37_1_8056_diatracer.689270.689270.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nQDIDLGAGRc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_sup_Slot2-37_1_8056_diatracer.689913.689913.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nASQEGPPGPEc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_sup_Slot2-37_1_8056_diatracer.690992.690992.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nLAILENTVVc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_sup_Slot2-37_1_8056_diatracer.691102.691102.2 [INFO:] Please specify modification and rerun PTMProphet ... ​ [INFO:] written 123000/186751 spectrum_queries [ERROR:] Cannot initialize for sequence: nHILDGTAEEc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_sup_Slot2-37_1_8056_diatracer.691617.691617.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nGEAQGSAASAAVAGTAAAc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_sup_Slot2-37_1_8056_diatracer.692006.692006.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nNALSPSTIWc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_sup_Slot2-37_1_8056_diatracer.694011.694011.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nPSLAAGPGAAAAc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_sup_Slot2-37_1_8056_diatracer.694727.694727.2 [INFO:] Please specify modification and rerun PTMProphet ... ​ [INFO:] written 124000/186751 spectrum_queries [ERROR:] Cannot initialize for sequence: nIPSESSVYAGETSAPc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_sup_Slot2-37_1_8056_diatracer.697758.697758.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nLHQDAPDLAc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_sup_Slot2-37_1_8056_diatracer.699541.699541.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nHILDGTAEEc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_sup_Slot2-37_1_8056_diatracer.699853.699853.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nLSNLNGSAESc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_sup_Slot2-37_1_8056_diatracer.702215.702215.2 [INFO:] Please specify modification and rerun PTMProphet ... ​ [INFO:] written 126000/186751 spectrum_queries [ERROR:] Cannot initialize for sequence: nSQADGVILFAGC[160]VEC[160]VE[172]M[147]QKEQAAFSc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_sup_Slot2-37_1_8056_diatracer.713565.713565.3 [INFO:] Please specify modification and rerun PTMProphet ... ​ [INFO:] written 127000/186751 spectrum_queries [ERROR:] Cannot initialize for sequence: nQAADLC[160]HWEELSFEIAVDRFQLPGc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_sup_Slot2-37_1_8056_diatracer.718170.718170.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nGSPQDLKLSGPGATDSPPALc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_sup_Slot2-37_1_8056_diatracer.720906.720906.2 [INFO:] Please specify modification and rerun PTMProphet ... ​ [INFO:] written 128000/186751 spectrum_queries [ERROR:] Cannot initialize for sequence: nSVQGAIMPDQLLASc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_sup_Slot2-37_1_8056_diatracer.726033.726033.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nAMLQFRGGASGLDLc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_sup_Slot2-37_1_8056_diatracer.726221.726221.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nTAQQNGDTPEAQGLDITTYGEc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_sup_Slot2-37_1_8056_diatracer.727298.727298.3 [INFO:] Please specify modification and rerun PTMProphet ... ​ [INFO:] written 129000/186751 spectrum_queries [ERROR:] Cannot initialize for sequence: nIPYEEGPGPGPLAEc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_sup_Slot2-37_1_8056_diatracer.733287.733287.2 [INFO:] Please specify modification and rerun PTMProphet ... ​ [INFO:] written 130000/186751 spectrum_queries [ERROR:] Cannot initialize for sequence: nDYVVQVIVSQPVQNPTPVENc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_sup_Slot2-37_1_8056_diatracer.739123.739123.3 [INFO:] Please specify modification and rerun PTMProphet ... ​ [INFO:] written 131000/186751 spectrum_queries [ERROR:] Cannot initialize for sequence: n[43]MTKATGFTFGGPTAGTGGFNFGSc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_sup_Slot2-37_1_8056_diatracer.739839.739839.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nELIDEAGDEWQDc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_sup_Slot2-37_1_8056_diatracer.742849.742849.2 [INFO:] Please specify modification and rerun PTMProphet ... ​ [INFO:] written 132000/186751 spectrum_queries [ERROR:] Cannot initialize for sequence: nVEQNTFVEVDVVC[160]AVLTSVDC[160]DMSPAPc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_sup_Slot2-37_1_8056_diatracer.745819.745819.4 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nC[160]SVRLSVPVSEGYc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_sup_Slot2-37_1_8056_diatracer.746284.746284.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nIQPQETLELGHPIc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_sup_Slot2-37_1_8056_diatracer.747074.747074.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nHWLSDNRVLQGNQRVANESc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_sup_Slot2-37_1_8056_diatracer.748745.748745.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nLADGQLQQAQIWGAc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_sup_Slot2-37_1_8056_diatracer.749801.749801.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nAAAVAEAEWRAALESESSGRRc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_sup_Slot2-37_1_8056_diatracer.750505.750505.3 [INFO:] Please specify modification and rerun PTMProphet ... ​ [INFO:] written 133000/186751 spectrum_queries [ERROR:] Cannot initialize for sequence: nETLNSIWNVEDHINPKC[160]Ec[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_sup_Slot2-37_1_8056_diatracer.752054.752054.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nIFNSILM[147]FKAAEKNSHNELc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_sup_Slot2-37_1_8056_diatracer.754615.754615.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nFHGSC[160]C[160]ASGFLGFFLM[147]FSTc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_sup_Slot2-37_1_8056_diatracer.754701.754701.3 [INFO:] Please specify modification and rerun PTMProphet ... ​ [INFO:] written 134000/186751 spectrum_queries [ERROR:] Cannot initialize for sequence: n[43]ESPISRHSIFC[160]Sc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_sup_Slot2-37_1_8056_diatracer.756178.756178.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nPETLVRPPPAPC[160]Lc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_sup_Slot2-37_1_8056_diatracer.759284.759284.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nPLHAPAGFSAGEVHTTPLGNLGAc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_sup_Slot2-37_1_8056_diatracer.760026.760026.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nGVGSNAATSQMAGGYAc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_sup_Slot2-37_1_8056_diatracer.760774.760774.2 [INFO:] Please specify modification and rerun PTMProphet ... ​ [INFO:] written 135000/186751 spectrum_queries [ERROR:] Cannot initialize for sequence: nHWLSDNRVLQGNQRVANESc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_sup_Slot2-37_1_8056_diatracer.762174.762174.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nLTDTNTSLESTSAVc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_sup_Slot2-37_1_8056_diatracer.764778.764778.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nEVC[160]RSSKLSGEDSc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_sup_Slot2-37_1_8056_diatracer.765195.765195.2 [INFO:] Please specify modification and rerun PTMProphet ... ​ [INFO:] written 136000/186751 spectrum_queries [ERROR:] Cannot initialize for sequence: nHQDEINTDEWKc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_sup_Slot2-37_1_8056_diatracer.767264.767264.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nYPIEHGIVTNWDc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_sup_Slot2-37_1_8056_diatracer.768818.768818.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nKM[147]LPSSIGLPSITEc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_sup_Slot2-37_1_8056_diatracer.769343.769343.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nYQAAAPSVSNc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_sup_Slot2-37_1_8056_diatracer.769612.769612.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nPAPAFKAPEPc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_sup_Slot2-37_1_8056_diatracer.770468.770468.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nLPGAMGQAGLVGPGPGGFc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_sup_Slot2-37_1_8056_diatracer.771105.771105.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nLEYSGMIIAQAPGLKc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_sup_Slot2-37_1_8056_diatracer.771418.771418.3 [INFO:] Please specify modification and rerun PTMProphet ... ​ [INFO:] written 137000/186751 spectrum_queries [ERROR:] Cannot initialize for sequence: nQTDLDAAGGEAc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_sup_Slot2-37_1_8056_diatracer.773517.773517.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nAEKGVLGSDALNLQEc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_sup_Slot2-37_1_8056_diatracer.774101.774101.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nYQAAAPSVSNc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_sup_Slot2-37_1_8056_diatracer.776182.776182.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nAAPAEIDQRc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_sup_Slot2-37_1_8056_diatracer.776561.776561.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nEEVPPPEGEc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_sup_Slot2-37_1_8056_diatracer.777154.777154.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nVSEC[160]C[160]RFILNLLc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_sup_Slot2-37_1_8056_diatracer.777709.777709.3 [INFO:] Please specify modification and rerun PTMProphet ... ​ [INFO:] written 138000/186751 spectrum_queries [ERROR:] Cannot initialize for sequence: nLGIPPSYVRc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_sup_Slot2-37_1_8056_diatracer.778061.778061.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nYVPYSESFSQVLEc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_sup_Slot2-37_1_8056_diatracer.778228.778228.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nQEAVFENLDKPGETQVISVc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_sup_Slot2-37_1_8056_diatracer.779936.779936.4 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nLLPLAC[160]DQLEM[147]LVGDLVGMc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_sup_Slot2-37_1_8056_diatracer.779963.779963.4 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nPLPHPGAGETc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_sup_Slot2-37_1_8056_diatracer.781639.781639.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nAALEYLGSFDHYATc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_sup_Slot2-37_1_8056_diatracer.781801.781801.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nSLHPAMLPAADGAGPRc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_sup_Slot2-37_1_8056_diatracer.781875.781875.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nNEGRDQLSMPLEAIc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_sup_Slot2-37_1_8056_diatracer.782170.782170.3 [INFO:] Please specify modification and rerun PTMProphet ... ​ [INFO:] written 139000/186751 spectrum_queries [ERROR:] Cannot initialize for sequence: nGSISFPASPQPM[147]YKc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_sup_Slot2-37_1_8056_diatracer.784372.784372.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nEKWDVPGEPESLEAc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_sup_Slot2-37_1_8056_diatracer.784883.784883.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nFPPSSSLVGRWGSSDc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_sup_Slot2-37_1_8056_diatracer.784920.784920.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nTINLLGSDHc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_sup_Slot2-37_1_8056_diatracer.785661.785661.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nEGLKFGGASEc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_sup_Slot2-37_1_8056_diatracer.787037.787037.2 [INFO:] Please specify modification and rerun PTMProphet ... ​ [INFO:] written 140000/186751 spectrum_queries [ERROR:] Cannot initialize for sequence: nTELTTLEEVc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_sup_Slot2-37_1_8056_diatracer.791523.791523.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nEKEIQPADLc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_sup_Slot2-37_1_8056_diatracer.791606.791606.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nYTTHLAFSTPAEGASc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_sup_Slot2-37_1_8056_diatracer.792061.792061.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nGPGLQTTLAEc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_sup_Slot2-37_1_8056_diatracer.793330.793330.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nPGSQMAIPGKc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_sup_Slot2-37_1_8056_diatracer.793831.793831.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nVAGFDLDGTLc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_sup_Slot2-37_1_8056_diatracer.794700.794700.2 [INFO:] Please specify modification and rerun PTMProphet ... ​ [INFO:] written 141000/186751 spectrum_queries [ERROR:] Cannot initialize for sequence: nFLAWSGVMEWQEAc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_sup_Slot2-37_1_8056_diatracer.795399.795399.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nLAQQQAAAAAAAAAAASQQGSAKc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_sup_Slot2-37_1_8056_diatracer.795713.795713.4 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nDHLSPLSSSMPFWc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_sup_Slot2-37_1_8056_diatracer.797586.797586.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nIVGGLIELVDc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_sup_Slot2-37_1_8056_diatracer.797970.797970.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nVSAPSGTGHLPGLNPLc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_sup_Slot2-37_1_8056_diatracer.798130.798130.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nDEILPTTPISEQKGGc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_sup_Slot2-37_1_8056_diatracer.798702.798702.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nGPETTGFHHVGQDGLDLLTSc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_sup_Slot2-37_1_8056_diatracer.798763.798763.4 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nKPPVPLDWAEVQSQc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_sup_Slot2-37_1_8056_diatracer.798937.798937.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nVEKDSSVHQPFDLc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_sup_Slot2-37_1_8056_diatracer.799471.799471.3 [INFO:] Please specify modification and rerun PTMProphet ... ​ [INFO:] written 142000/186751 spectrum_queries [ERROR:] Cannot initialize for sequence: nNEGRDQLSMPLEAIc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_sup_Slot2-37_1_8056_diatracer.800625.800625.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nLLEALSHLVc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_sup_Slot2-37_1_8056_diatracer.801142.801142.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nNEGRDQLSMPLEAIc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_sup_Slot2-37_1_8056_diatracer.802934.802934.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nKDNQFIWKPGLAKc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_sup_Slot2-37_1_8056_diatracer.803481.803481.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nLPDSSSSASASc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_sup_Slot2-37_1_8056_diatracer.804085.804085.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nIVEPPSAAAPAc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_sup_Slot2-37_1_8056_diatracer.804789.804789.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nC[160]VGIVENHGc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_sup_Slot2-37_1_8056_diatracer.804855.804855.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nPEGGGAPGAAQAc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_sup_Slot2-37_1_8056_diatracer.805049.805049.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nPQGEVLSAQQQEKQc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_sup_Slot2-37_1_8056_diatracer.805315.805315.3 [INFO:] Please specify modification and rerun PTMProphet ... ​ [INFO:] written 143000/186751 spectrum_queries [ERROR:] Cannot initialize for sequence: nNLEIPGKSLc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_sup_Slot2-37_1_8056_diatracer.806608.806608.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nSLPQMSNLEc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_sup_Slot2-37_1_8056_diatracer.806908.806908.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nIVGGLIELVDc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_sup_Slot2-37_1_8056_diatracer.807188.807188.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nEGLKFGGASEc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_sup_Slot2-37_1_8056_diatracer.810277.810277.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nVPEPEPGPFc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_sup_Slot2-37_1_8056_diatracer.811070.811070.2 [INFO:] Please specify modification and rerun PTMProphet ... ​ [INFO:] written 144000/186751 spectrum_queries [ERROR:] Cannot initialize for sequence: nLPGSGNSPASASc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_sup_Slot2-37_1_8056_diatracer.812538.812538.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nVPEPEPGPFc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_sup_Slot2-37_1_8056_diatracer.813382.813382.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nEDLVQDQDLEAIRc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_sup_Slot2-37_1_8056_diatracer.813425.813425.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nPSSFSDSERc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_sup_Slot2-37_1_8056_diatracer.813496.813496.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nDKDPDNAAGC[160]GGSC[160]Lc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_sup_Slot2-37_1_8056_diatracer.814746.814746.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nEDLLNNGQPc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_sup_Slot2-37_1_8056_diatracer.815002.815002.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nNRVQNPYSHGNIVc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_sup_Slot2-37_1_8056_diatracer.815706.815706.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nITITEC[160]GQIc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_sup_Slot2-37_1_8056_diatracer.816658.816658.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nASPDDPSGLPGRSPDTc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_sup_Slot2-37_1_8056_diatracer.816821.816821.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nDPAGIYQAQSWYLGc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_sup_Slot2-37_1_8056_diatracer.816913.816913.3 [INFO:] Please specify modification and rerun PTMProphet ... ​ [INFO:] written 145000/186751 spectrum_queries [ERROR:] Cannot initialize for sequence: nDQPEETGPAASDLRc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_sup_Slot2-37_1_8056_diatracer.819900.819900.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nPSQLEPGPTDTQPSPc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_sup_Slot2-37_1_8056_diatracer.822054.822054.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nIC[160]DGVQFGAGIRFLc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_sup_Slot2-37_1_8056_diatracer.822153.822153.3 [INFO:] Please specify modification and rerun PTMProphet ... ​ [INFO:] written 146000/186751 spectrum_queries [ERROR:] Cannot initialize for sequence: nLAEDAPNFDGPAAE[172]GQPGQc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_sup_Slot2-37_1_8056_diatracer.825174.825174.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nHISHWVLQGVC[160]LTLNSDc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_sup_Slot2-37_1_8056_diatracer.826158.826158.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nNFGPKGFGFGQGAGALVHSEc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_sup_Slot2-37_1_8056_diatracer.826845.826845.2 [INFO:] Please specify modification and rerun PTMProphet ... ​ [INFO:] written 147000/186751 spectrum_queries [ERROR:] Cannot initialize for sequence: nYGTPQKLVESEC[160]LQANLVEM[147]LFSEDc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_sup_Slot2-37_1_8056_diatracer.830427.830427.3 [INFO:] Please specify modification and rerun PTMProphet ... ​ [INFO:] written 148000/186751 spectrum_queries [ERROR:] Cannot initialize for sequence: nEIGAIAQVHAENGDLIAEGAc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_sup_Slot2-37_1_8056_diatracer.838242.838242.2 [INFO:] Please specify modification and rerun PTMProphet ... ​ [INFO:] written 149000/186751 spectrum_queries [ERROR:] Cannot initialize for sequence: nSPSDLLDASAVSATSRYIE[172]E[172]Qc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_sup_Slot2-37_1_8056_diatracer.842095.842095.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nVC[160]SSRTGANGHLYLIIPHSSALADEYWc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_sup_Slot2-37_1_8056_diatracer.845001.845001.4 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nM[147]ELLMSALSPC[160]LLc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_sup_Slot2-37_1_8056_diatracer.845984.845984.2 [INFO:] Please specify modification and rerun PTMProphet ... ​ [INFO:] written 150000/186751 spectrum_queries [ERROR:] Cannot initialize for sequence: nPLMAPSETQFSHLc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_sup_Slot2-37_1_8056_diatracer.848567.848567.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nSSAAAAAALDLSGRRGc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_sup_Slot2-37_1_8056_diatracer.849142.849142.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nIEEATVTAEDILYc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_sup_Slot2-37_1_8056_diatracer.850808.850808.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nTQDATQTSC[160]STQSDASKQADLc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_sup_Slot2-37_1_8056_diatracer.850853.850853.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nELQAAPSDPTTHLAAc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_sup_Slot2-37_1_8056_diatracer.852967.852967.2 [INFO:] Please specify modification and rerun PTMProphet ... ​ [INFO:] written 151000/186751 spectrum_queries [ERROR:] Cannot initialize for sequence: nPQNQNAC[160]SSEMFTc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_sup_Slot2-37_1_8056_diatracer.854618.854618.2 [INFO:] Please specify modification and rerun PTMProphet ... ​ [INFO:] written 152000/186751 spectrum_queries [ERROR:] Cannot initialize for sequence: nSRYM[147]ELYTYPPAc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_sup_Slot2-37_1_8056_diatracer.862086.862086.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nAVVIRHLYNEDNVDISEDTLSPITDVNc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_sup_Slot2-37_1_8056_diatracer.862512.862512.4 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nPQNQNAC[160]SSEMFTc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_sup_Slot2-37_1_8056_diatracer.864157.864157.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nTQDATQTSC[160]STQSDASKQADLc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_sup_Slot2-37_1_8056_diatracer.864205.864205.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nHVDASFFLGKVC[160]FLATGGGRLc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_sup_Slot2-37_1_8056_diatracer.864481.864481.3 [INFO:] Please specify modification and rerun PTMProphet ... ​ [INFO:] written 153000/186751 spectrum_queries [ERROR:] Cannot initialize for sequence: nQGLLGGAGTVLC[160]SWGc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_sup_Slot2-37_1_8056_diatracer.866306.866306.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nNLNISQHGSDM[147]QVSc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_sup_Slot2-37_1_8056_diatracer.867173.867173.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nENDWGFSNFMAWc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_sup_Slot2-37_1_8056_diatracer.867371.867371.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nILNQPC[160]IPGM[147]KPTc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_sup_Slot2-37_1_8056_diatracer.868456.868456.2 [INFO:] Please specify modification and rerun PTMProphet ... ​ [INFO:] written 154000/186751 spectrum_queries [ERROR:] Cannot initialize for sequence: nSRYM[147]ELYTYPPAc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_sup_Slot2-37_1_8056_diatracer.871636.871636.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nVLSNLPQDSDPDQLc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_sup_Slot2-37_1_8056_diatracer.873000.873000.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nGGSYSQAASSDSAQGSD[158]VSLTAC[160]c[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_sup_Slot2-37_1_8056_diatracer.875508.875508.3 [INFO:] Please specify modification and rerun PTMProphet ... ​ [INFO:] written 155000/186751 spectrum_queries [ERROR:] Cannot initialize for sequence: nPASPDRSGAFTWLERGSEAAAGAc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_sup_Slot2-37_1_8056_diatracer.875929.875929.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nLINSETALPFGNDLc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_sup_Slot2-37_1_8056_diatracer.880784.880784.2 [INFO:] Please specify modification and rerun PTMProphet ... ​ [INFO:] written 156000/186751 spectrum_queries [ERROR:] Cannot initialize for sequence: nLQETVTPKQFLLIAIIMFLGc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_sup_Slot2-37_1_8056_diatracer.882958.882958.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nLETGAPRPPAc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_sup_Slot2-37_1_8056_diatracer.884787.884787.2 [INFO:] Please specify modification and rerun PTMProphet ... ​ [INFO:] written 157000/186751 spectrum_queries [ERROR:] Cannot initialize for sequence: nDIRPGAAFEPTYIYc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_sup_Slot2-37_1_8056_diatracer.889093.889093.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nRPMRTAGIAGWHGWc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_sup_Slot2-37_1_8056_diatracer.889563.889563.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nELEAELEAQLVQAEc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_sup_Slot2-37_1_8056_diatracer.890055.890055.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nPGEAGLGGQERc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_sup_Slot2-37_1_8056_diatracer.890374.890374.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nEQPSGPWM[147]DNVYNSc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_sup_Slot2-37_1_8056_diatracer.890631.890631.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nSMVAFIAADTMVTTEc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_sup_Slot2-37_1_8056_diatracer.890670.890670.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: n[43]HDGLNDC[160]VNc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_sup_Slot2-37_1_8056_diatracer.891027.891027.2 [INFO:] Please specify modification and rerun PTMProphet ... ​ [INFO:] written 158000/186751 spectrum_queries [ERROR:] Cannot initialize for sequence: nEWNSAFAC[160]Tc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_sup_Slot2-37_1_8056_diatracer.893425.893425.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nSSVDPAIFAFc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_sup_Slot2-37_1_8056_diatracer.894223.894223.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nILEEYAVFSc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_sup_Slot2-37_1_8056_diatracer.895152.895152.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nHLYPNTPYAc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_sup_Slot2-37_1_8056_diatracer.895669.895669.2 [INFO:] Please specify modification and rerun PTMProphet ... ​ [INFO:] written 159000/186751 spectrum_queries [ERROR:] Cannot initialize for sequence: nPC[160]LGRRC[160]SAPAAASVAPGGQSGIc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_sup_Slot2-37_1_8056_diatracer.899133.899133.4 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nDVVENNMKQc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_sup_Slot2-37_1_8056_diatracer.900391.900391.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nGHYAGMGSSGVGc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_sup_Slot2-37_1_8056_diatracer.900736.900736.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nMSNNGADLTFc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_sup_Slot2-37_1_8056_diatracer.902368.902368.2 [INFO:] Please specify modification and rerun PTMProphet ... ​ [INFO:] written 160000/186751 spectrum_queries [ERROR:] Cannot initialize for sequence: nSLHPAM[147]LPAADGAGPRc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_sup_Slot2-37_1_8056_diatracer.904916.904916.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nEGNAEAEASPDSAGTLAc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_sup_Slot2-37_1_8056_diatracer.905204.905204.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nGVGQGEGMPSSDFTTEc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_sup_Slot2-37_1_8056_diatracer.906629.906629.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nGPTWTEVPEc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_sup_Slot2-37_1_8056_diatracer.906872.906872.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nSRWLGGAAAWc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_sup_Slot2-37_1_8056_diatracer.907594.907594.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nNMALFEPPSTDTLPPc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_sup_Slot2-37_1_8056_diatracer.907811.907811.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nPEVEVSPRQc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_sup_Slot2-37_1_8056_diatracer.908158.908158.2 [INFO:] Please specify modification and rerun PTMProphet ... ​ [INFO:] written 161000/186751 spectrum_queries [ERROR:] Cannot initialize for sequence: nKDDENIPMETGNSPAc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_sup_Slot2-37_1_8056_diatracer.909282.909282.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nSGAGGGLGAMAPDLQLEAc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_sup_Slot2-37_1_8056_diatracer.909403.909403.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nLEVSTEDVHc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_sup_Slot2-37_1_8056_diatracer.909874.909874.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nNESIWIHLGGQMGPLGKSIDc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_sup_Slot2-37_1_8056_diatracer.910151.910151.4 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nTFLKC[160]GALQGLYTTVDFGTGc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_sup_Slot2-37_1_8056_diatracer.911613.911613.4 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nSGLTATSTSPVc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_sup_Slot2-37_1_8056_diatracer.911692.911692.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nPWQSTSSNSSc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_sup_Slot2-37_1_8056_diatracer.912747.912747.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nSLKWLLSIINLVQQc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_sup_Slot2-37_1_8056_diatracer.913290.913290.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nFTVSELAEDTLLQAAc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_sup_Slot2-37_1_8056_diatracer.913319.913319.3 [INFO:] Please specify modification and rerun PTMProphet ... ​ [INFO:] written 162000/186751 spectrum_queries [ERROR:] Cannot initialize for sequence: nAENLGGPGAGAGTLAGKDAc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_sup_Slot2-37_1_8056_diatracer.915993.915993.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nEGGDTAVAMSEc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_sup_Slot2-37_1_8056_diatracer.916999.916999.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nGASANWWNHc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_sup_Slot2-37_1_8056_diatracer.917666.917666.2 [INFO:] Please specify modification and rerun PTMProphet ... ​ [INFO:] written 163000/186751 spectrum_queries [ERROR:] Cannot initialize for sequence: nSGLYPTGSSGSc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_sup_Slot2-37_1_8056_diatracer.923370.923370.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nEQHGEDGVEDM[147]TQLc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_sup_Slot2-37_1_8056_diatracer.923424.923424.3 [INFO:] Please specify modification and rerun PTMProphet ... ​ [INFO:] written 164000/186751 spectrum_queries [ERROR:] Cannot initialize for sequence: nPEAGGGGRGVGAVAAAAAAAc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_sup_Slot2-37_1_8056_diatracer.926572.926572.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nFVTSWASSGSASQGQGTc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_sup_Slot2-37_1_8056_diatracer.927861.927861.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nMSNNGADLTFc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_sup_Slot2-37_1_8056_diatracer.928975.928975.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nELLMLQDNLc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_sup_Slot2-37_1_8056_diatracer.930371.930371.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nSSQRSDAGAC[160]LM[147]TAQc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_sup_Slot2-37_1_8056_diatracer.930687.930687.3 [INFO:] Please specify modification and rerun PTMProphet ... ​ [INFO:] written 165000/186751 spectrum_queries [ERROR:] Cannot initialize for sequence: nTQSATPPSRTLSATPPc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_sup_Slot2-37_1_8056_diatracer.932633.932633.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nSLKWLLSIINLVQQc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_sup_Slot2-37_1_8056_diatracer.932647.932647.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nLLQYQPAPGAAAETAGc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_sup_Slot2-37_1_8056_diatracer.933305.933305.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nGTPGAVPTGAGSVAASGAGAc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_sup_Slot2-37_1_8056_diatracer.935523.935523.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nDLQAVLC[160]PPc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_sup_Slot2-37_1_8056_diatracer.935801.935801.2 [INFO:] Please specify modification and rerun PTMProphet ... ​ [INFO:] written 166000/186751 spectrum_queries [ERROR:] Cannot initialize for sequence: nLEAERAKNQc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_sup_Slot2-37_1_8056_diatracer.938305.938305.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nGLGFC[160]YFSLc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_sup_Slot2-37_1_8056_diatracer.938324.938324.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nILEEYAVFSc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_sup_Slot2-37_1_8056_diatracer.938670.938670.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nLVLSLAAVYEc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_sup_Slot2-37_1_8056_diatracer.939185.939185.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nDRVAVQPSSLEMSALc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_sup_Slot2-37_1_8056_diatracer.939449.939449.3 [INFO:] Please specify modification and rerun PTMProphet ... ​ [INFO:] written 167000/186751 spectrum_queries [ERROR:] Cannot initialize for sequence: nMGRAAAGPGLQPPQHPQAGEAc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_sup_Slot2-37_1_8056_diatracer.942909.942909.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nGGSYSQAASSDSAQGSDVSLTAc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_sup_Slot2-37_1_8056_diatracer.946051.946051.2 [INFO:] Please specify modification and rerun PTMProphet ... ​ [INFO:] written 169000/186751 spectrum_queries [ERROR:] Cannot initialize for sequence: nFLAWSGVMEWQEAc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_sup_Slot2-37_1_8056_diatracer.955328.955328.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nIQEESSSSISSEM[147]Kc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_sup_Slot2-37_1_8056_diatracer.955405.955405.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nEENEGVYNGSWGGRGEDLAMHc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_sup_Slot2-37_1_8056_diatracer.955475.955475.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nLAATNALLNSLE[172]FTc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_sup_Slot2-37_1_8056_diatracer.956070.956070.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nPESLHVPPETLGEGDc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_sup_Slot2-37_1_8056_diatracer.956097.956097.2 [INFO:] Please specify modification and rerun PTMProphet ... ​ [INFO:] written 170000/186751 spectrum_queries [ERROR:] Cannot initialize for sequence: nAITIAGIPQSIIE[172]C[160]c[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_sup_Slot2-37_1_8056_diatracer.959729.959729.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nDELHIVEAEAMNYc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_sup_Slot2-37_1_8056_diatracer.959741.959741.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nATAGEPSPHGQVSSPPc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_sup_Slot2-37_1_8056_diatracer.960844.960844.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nATAGEPSPHGQVSSPPc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_sup_Slot2-37_1_8056_diatracer.964304.964304.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nIQEESSSSISSEM[147]Kc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_sup_Slot2-37_1_8056_diatracer.964335.964335.2 [INFO:] Please specify modification and rerun PTMProphet ... ​ [INFO:] written 171000/186751 spectrum_queries [ERROR:] Cannot initialize for sequence: nLMSELYHPDDHVLc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_sup_Slot2-37_1_8056_diatracer.968098.968098.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nTELSLLLQNTHPRc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_sup_Slot2-37_1_8056_diatracer.968135.968135.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nGIIVIGDGSSM[147]DVIAPc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_sup_Slot2-37_1_8056_diatracer.969528.969528.2 [INFO:] Please specify modification and rerun PTMProphet ... ​ [INFO:] written 172000/186751 spectrum_queries [ERROR:] Cannot initialize for sequence: nQIEDTVLYGYYTNc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_sup_Slot2-37_1_8056_diatracer.971728.971728.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nYEKIQEASLRETLSIEQQLGc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_sup_Slot2-37_1_8056_diatracer.976733.976733.3 [INFO:] Please specify modification and rerun PTMProphet ... ​ [INFO:] written 173000/186751 spectrum_queries [ERROR:] Cannot initialize for sequence: nGGSYSQAASSDSAQGSDMSLTAC[160]Kc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_sup_Slot2-37_1_8056_diatracer.977426.977426.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nPAELSPAAAAAPGSAEASc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_sup_Slot2-37_1_8056_diatracer.978355.978355.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nVWVQSLEKKAEDLSSLNGQLQc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_sup_Slot2-37_1_8056_diatracer.978548.978548.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nYEPLFEINTIRFc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_sup_Slot2-37_1_8056_diatracer.980744.980744.2 [INFO:] Please specify modification and rerun PTMProphet ... ​ [INFO:] written 174000/186751 spectrum_queries [ERROR:] Cannot initialize for sequence: nSELPTDNSETVENTc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_sup_Slot2-37_1_8056_diatracer.983783.983783.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nDQPC[160]AAGAPPPEANGAc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_sup_Slot2-37_1_8056_diatracer.985267.985267.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nHNFTSASTDVSYRNc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_sup_Slot2-37_1_8056_diatracer.986315.986315.2 [INFO:] Please specify modification and rerun PTMProphet ... ​ [INFO:] written 175000/186751 spectrum_queries [ERROR:] Cannot initialize for sequence: nLEKEIEQEETLSAc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_sup_Slot2-37_1_8056_diatracer.990376.990376.2 [INFO:] Please specify modification and rerun PTMProphet ... ​ [INFO:] written 176000/186751 spectrum_queries [ERROR:] Cannot initialize for sequence: nETVPPGNGAPDVFQTc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_sup_Slot2-37_1_8056_diatracer.994316.994316.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nLGRYMEDTSVPAVPTc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_sup_Slot2-37_1_8056_diatracer.995470.995470.3 [INFO:] Please specify modification and rerun PTMProphet ... ​ [INFO:] written 177000/186751 spectrum_queries [ERROR:] Cannot initialize for sequence: nSC[160]PM[147]AM[147]TSGQc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_sup_Slot2-37_1_8056_diatracer.1000182.1000182.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nPEVTTMPLGLc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_sup_Slot2-37_1_8056_diatracer.1000450.1000450.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nAYSGGHEM[147]ALGc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_sup_Slot2-37_1_8056_diatracer.1000706.1000706.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nSPSRGSSGVNTGSPTPGPc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_sup_Slot2-37_1_8056_diatracer.1000921.1000921.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nHMVYLIVEGVPRWVc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_sup_Slot2-37_1_8056_diatracer.1005192.1005192.3 [INFO:] Please specify modification and rerun PTMProphet ... ​ [INFO:] written 178000/186751 spectrum_queries [ERROR:] Cannot initialize for sequence: nSGAGPGAAAAAAGPGc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_sup_Slot2-37_1_8056_diatracer.1006567.1006567.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nGVVPPHPKSPPc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_sup_Slot2-37_1_8056_diatracer.1008382.1008382.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nGMDKTAGGLAQKMVFEc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_sup_Slot2-37_1_8056_diatracer.1009259.1009259.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nGAPQAGAVLQAPSSWPRc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_sup_Slot2-37_1_8056_diatracer.1009647.1009647.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nFYTVLSTQNLLIAEEc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_sup_Slot2-37_1_8056_diatracer.1010179.1010179.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nVELNKPSDSVGKDVFc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_sup_Slot2-37_1_8056_diatracer.1010480.1010480.3 [INFO:] Please specify modification and rerun PTMProphet ... ​ [INFO:] written 179000/186751 spectrum_queries [ERROR:] Cannot initialize for sequence: nGTGGVDTAAVGGVFDVSNAc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_sup_Slot2-37_1_8056_diatracer.1010888.1010888.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nSSLFQALLGC[160]c[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_sup_Slot2-37_1_8056_diatracer.1012321.1012321.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nVELNKPSDSVGKDVFc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_sup_Slot2-37_1_8056_diatracer.1013012.1013012.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nQTIIPDYRNMIGQGAc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_sup_Slot2-37_1_8056_diatracer.1014367.1014367.3 [INFO:] Please specify modification and rerun PTMProphet ... ​ [INFO:] written 180000/186751 spectrum_queries [ERROR:] Cannot initialize for sequence: nPHGIVLLLLLGASALLGc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_sup_Slot2-37_1_8056_diatracer.1016416.1016416.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nLTGNEWRRTc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_sup_Slot2-37_1_8056_diatracer.1016923.1016923.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nKPGINVASDWSIHLRc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_sup_Slot2-37_1_8056_diatracer.1017426.1017426.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nHAVAGC[160]IISLLWFFGc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_sup_Slot2-37_1_8056_diatracer.1018541.1018541.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nQRIDEFEAMc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_sup_Slot2-37_1_8056_diatracer.1019901.1019901.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nDLPEHAVLKMKGMEFc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_sup_Slot2-37_1_8056_diatracer.1020236.1020236.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nILAHLTGTEFc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_sup_Slot2-37_1_8056_diatracer.1020619.1020619.2 [INFO:] Please specify modification and rerun PTMProphet ... ​ [INFO:] written 181000/186751 spectrum_queries [ERROR:] Cannot initialize for sequence: nSHPSTLDQMEc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_sup_Slot2-37_1_8056_diatracer.1022798.1022798.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nPHGIVLLLLLGASALLGc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_sup_Slot2-37_1_8056_diatracer.1024012.1024012.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nTPGWAASLMWSESLPPC[160]LPQAc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_sup_Slot2-37_1_8056_diatracer.1025199.1025199.4 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nSIDQFGLGKGEc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_sup_Slot2-37_1_8056_diatracer.1025383.1025383.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nLSPALPPPFSC[160]SPC[160]LPc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_sup_Slot2-37_1_8056_diatracer.1025388.1025388.3 [INFO:] Please specify modification and rerun PTMProphet ... ​ [INFO:] written 182000/186751 spectrum_queries [ERROR:] Cannot initialize for sequence: nAGGLLVAAMSAFLGIAPSPc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_sup_Slot2-37_1_8056_diatracer.1030497.1030497.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nALIDETQDVLc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_sup_Slot2-37_1_8056_diatracer.1031395.1031395.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nDVEDLVNC[160]Hc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_sup_Slot2-37_1_8056_diatracer.1032808.1032808.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nTIDELVEC[160]EETFGRc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_sup_Slot2-37_1_8056_diatracer.1032835.1032835.3 [INFO:] Please specify modification and rerun PTMProphet ... ​ [INFO:] written 183000/186751 spectrum_queries [ERROR:] Cannot initialize for sequence: nMTLTTGTVNLFVYLKc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_sup_Slot2-37_1_8056_diatracer.1034119.1034119.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nDFLEGGSVLQc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_sup_Slot2-37_1_8056_diatracer.1036186.1036186.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nLSGFLPSSWPGPC[160]TFc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_sup_Slot2-37_1_8056_diatracer.1036442.1036442.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nLDGIALPPTVVc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_sup_Slot2-37_1_8056_diatracer.1037634.1037634.2 [INFO:] Please specify modification and rerun PTMProphet ... ​ [INFO:] written 184000/186751 spectrum_queries [ERROR:] Cannot initialize for sequence: nDLAAAPTSYLDc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_sup_Slot2-37_1_8056_diatracer.1040193.1040193.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nQSSQSSSVHQc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_sup_Slot2-37_1_8056_diatracer.1041472.1041472.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nYDRLGFLLNLDSKLc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_sup_Slot2-37_1_8056_diatracer.1041925.1041925.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nLQEALTFTC[160]c[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_sup_Slot2-37_1_8056_diatracer.1042085.1042085.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nASVYQTIFSTc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_sup_Slot2-37_1_8056_diatracer.1044018.1044018.2 [INFO:] Please specify modification and rerun PTMProphet ... ​ [INFO:] written 185000/186751 spectrum_queries [ERROR:] Cannot initialize for sequence: nLD[202]ENVHTDNc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_sup_Slot2-37_1_8056_diatracer.1045021.1045021.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nELNSANSLHEc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_sup_Slot2-37_1_8056_diatracer.1046083.1046083.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nPFTRGDGPSITEVQVGc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_sup_Slot2-37_1_8056_diatracer.1046508.1046508.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nMTLTTGTVNLFVYLKc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_sup_Slot2-37_1_8056_diatracer.1046747.1046747.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nLD[202]ENVHTDNc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_sup_Slot2-37_1_8056_diatracer.1047551.1047551.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nSAPSAGLGSNVVRNRTNc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_sup_Slot2-37_1_8056_diatracer.1049180.1049180.3 [INFO:] Please specify modification and rerun PTMProphet ... ​ [INFO:] written 186000/186751 spectrum_queries [ERROR:] Cannot initialize for sequence: nLD[202]ENVHTDNc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_sup_Slot2-37_1_8056_diatracer.1050074.1050074.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nQHGVGGAFGC[160]Rc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_sup_Slot2-37_1_8056_diatracer.1050445.1050445.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nEDLSSNC[160]PGPTSADHDc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_sup_Slot2-37_1_8056_diatracer.1050496.1050496.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nC[160]IYPDGEIHc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_sup_Slot2-37_1_8056_diatracer.1050560.1050560.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nPQASALEMPKc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_sup_Slot2-37_1_8056_diatracer.1051821.1051821.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nAWDSQGIPEGWGTSSPc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_sup_Slot2-37_1_8056_diatracer.1052432.1052432.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nTFERVYGLAGEPAAPSGc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_sup_Slot2-37_1_8056_diatracer.1052477.1052477.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nDRWTLVARc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_sup_Slot2-37_1_8056_diatracer.1053454.1053454.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nQASVDSGIVQc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_sup_Slot2-37_1_8056_diatracer.1054049.1054049.3 [INFO:] Please specify modification and rerun PTMProphet ... [INFO:] done ... [INFO:] Writing file interact-20240927_SW-KF_S1_sup_Slot2-37_1_8056_diatracer.mod.pep.xml ... [INFO:] done ... Process 'PTMProphet' finished, exit code: 0 [INFO:] Using statically set 15 PPM tolerance ... [INFO:] Writing file interact-20240927_SW-KF_S1_total_Slot2-36_1_8055_diatracer.pep.xml.tmp.a36608 ... [INFO:] Creating 1 threads [INFO:] Wait for threads to finish ... [INFO:] Reading file interact-20240927_SW-KF_S1_total_Slot2-36_1_8055_diatracer.pep.xml ... ​ [INFO:] processed 1000/195503 spectrum_queries [ERROR:] Cannot initialize for sequence: nLHPFTC[160]NGLQFLEYWEc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_total_Slot2-36_1_8055_diatracer.08662.08662.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nLFLNETQTQEITE[216]D[158]IPc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_total_Slot2-36_1_8055_diatracer.10304.10304.2 [INFO:] Please specify modification and rerun PTMProphet ... ​ [INFO:] processed 2000/195503 spectrum_queries [ERROR:] Cannot initialize for sequence: nEDLISAFGTDDQTEIYFDc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_total_Slot2-36_1_8055_diatracer.11523.11523.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nLFLNETQTQEITE[216]D[158]IPc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_total_Slot2-36_1_8055_diatracer.11960.11960.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nLQVGSGAERTSGAC[160]ARc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_total_Slot2-36_1_8055_diatracer.12870.12870.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nLFSNKVGC[160]AAAPLQPAc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_total_Slot2-36_1_8055_diatracer.15132.15132.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nSLNESTVSTSYVNVAc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_total_Slot2-36_1_8055_diatracer.15685.15685.2 [INFO:] Please specify modification and rerun PTMProphet ... ​ [INFO:] processed 3000/195503 spectrum_queries [ERROR:] Cannot initialize for sequence: nGHFWPMLSLKPDASc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_total_Slot2-36_1_8055_diatracer.19554.19554.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nGANELAEQLAAASTSAPMAAGLLSSPc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_total_Slot2-36_1_8055_diatracer.19768.19768.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nKNC[160]AQLWLGPAAFINHDLINSc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_total_Slot2-36_1_8055_diatracer.20258.20258.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nPAAM[147]ELDTPC[160]DAEGNc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_total_Slot2-36_1_8055_diatracer.21669.21669.2 [INFO:] Please specify modification and rerun PTMProphet ... ​ [INFO:] processed 4000/195503 spectrum_queries [ERROR:] Cannot initialize for sequence: nEDLQPGILMEAEKHc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_total_Slot2-36_1_8055_diatracer.22276.22276.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nYC[160]LTPEYPELGEPAc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_total_Slot2-36_1_8055_diatracer.23053.23053.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nSRELLDNEELQAIFHSKSLC[160]c[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_total_Slot2-36_1_8055_diatracer.26698.26698.3 [INFO:] Please specify modification and rerun PTMProphet ... ​ [INFO:] processed 5000/195503 spectrum_queries [ERROR:] Cannot initialize for sequence: nQNGALVHPGSSPPME[216]RNPSSLTQc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_total_Slot2-36_1_8055_diatracer.28177.28177.3 [INFO:] Please specify modification and rerun PTMProphet ... ​ [INFO:] processed 6000/195503 spectrum_queries [ERROR:] Cannot initialize for sequence: nPSVSVELGPNGLLMAALLLLAWTAc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_total_Slot2-36_1_8055_diatracer.34213.34213.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nPPFGQGYTQPGPGYRc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_total_Slot2-36_1_8055_diatracer.36742.36742.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nADPHLEFQQFPQSPc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_total_Slot2-36_1_8055_diatracer.37495.37495.2 [INFO:] Please specify modification and rerun PTMProphet ... ​ [INFO:] processed 7000/195503 spectrum_queries [ERROR:] Cannot initialize for sequence: nDLFLRLLFDHVDGLTEPGGMNLc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_total_Slot2-36_1_8055_diatracer.40456.40456.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nAQVISMMDLPTNHIGc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_total_Slot2-36_1_8055_diatracer.41666.41666.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nPLFPHWTQLVHGITTGPPAQVEc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_total_Slot2-36_1_8055_diatracer.42085.42085.3 [INFO:] Please specify modification and rerun PTMProphet ... ​ [INFO:] processed 8000/195503 spectrum_queries [ERROR:] Cannot initialize for sequence: nMMMRVHWLTLMTSc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_total_Slot2-36_1_8055_diatracer.43611.43611.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nQIDLSSADAAQEHEEDHTSTPNPc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_total_Slot2-36_1_8055_diatracer.47266.47266.3 [INFO:] Please specify modification and rerun PTMProphet ... ​ [INFO:] processed 9000/195503 spectrum_queries [ERROR:] Cannot initialize for sequence: nGPQGPPPAGLLHc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_total_Slot2-36_1_8055_diatracer.50560.50560.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nARYFWGNLPGMNSSAKc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_total_Slot2-36_1_8055_diatracer.50759.50759.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nMDEYTTENGVc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_total_Slot2-36_1_8055_diatracer.51970.51970.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nGALDKHSGSSNMLQALDQRVAAAc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_total_Slot2-36_1_8055_diatracer.52589.52589.4 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nVADEVVLPRQc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_total_Slot2-36_1_8055_diatracer.52703.52703.2 [INFO:] Please specify modification and rerun PTMProphet ... ​ [INFO:] processed 10000/195503 spectrum_queries [ERROR:] Cannot initialize for sequence: nVYAAGGAPARALPSEQHGc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_total_Slot2-36_1_8055_diatracer.56158.56158.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nTPDSMFLAMLAVVSC[160]Ac[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_total_Slot2-36_1_8055_diatracer.57167.57167.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nPREQNGAIYLPTPDRc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_total_Slot2-36_1_8055_diatracer.57944.57944.3 [INFO:] Please specify modification and rerun PTMProphet ... ​ [INFO:] processed 11000/195503 spectrum_queries [ERROR:] Cannot initialize for sequence: nFSGLGFHYYAc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_total_Slot2-36_1_8055_diatracer.59989.59989.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nAAEQAPLMAAAAAAAAAAAGPc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_total_Slot2-36_1_8055_diatracer.60211.60211.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nDLPPAPQPASSPc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_total_Slot2-36_1_8055_diatracer.60846.60846.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nGNIGTGLLGLPLAc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_total_Slot2-36_1_8055_diatracer.62055.62055.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nAYSC[160]KC[160]LAHc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_total_Slot2-36_1_8055_diatracer.62461.62461.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nWTSDSKYIMc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_total_Slot2-36_1_8055_diatracer.63489.63489.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nLLDC[160]TSHISSTQQHYc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_total_Slot2-36_1_8055_diatracer.63585.63585.3 [INFO:] Please specify modification and rerun PTMProphet ... ​ [INFO:] processed 12000/195503 spectrum_queries [ERROR:] Cannot initialize for sequence: nSFAISRLEWc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_total_Slot2-36_1_8055_diatracer.64912.64912.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nEISIKEISQEc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_total_Slot2-36_1_8055_diatracer.66253.66253.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nTTELGGAAPSPEc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_total_Slot2-36_1_8055_diatracer.68736.68736.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nAQGAPDAPFHMc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_total_Slot2-36_1_8055_diatracer.69097.69097.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nLVNLQSWDDGERKFSc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_total_Slot2-36_1_8055_diatracer.69204.69204.3 [INFO:] Please specify modification and rerun PTMProphet ... ​ [INFO:] processed 13000/195503 spectrum_queries [ERROR:] Cannot initialize for sequence: nGEIGPM[147]GIPGPQGPPGPHc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_total_Slot2-36_1_8055_diatracer.70372.70372.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nPTQAGIRYRKc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_total_Slot2-36_1_8055_diatracer.72062.72062.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nEDPLGEAQPQIc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_total_Slot2-36_1_8055_diatracer.72611.72611.2 [INFO:] Please specify modification and rerun PTMProphet ... ​ [INFO:] processed 14000/195503 spectrum_queries [ERROR:] Cannot initialize for sequence: nVYAAGGAPARALPSEQHGc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_total_Slot2-36_1_8055_diatracer.74670.74670.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nPLTPC[160]TDKGSAc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_total_Slot2-36_1_8055_diatracer.74817.74817.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nIIETPPHRYc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_total_Slot2-36_1_8055_diatracer.76431.76431.2 [INFO:] Please specify modification and rerun PTMProphet ... ​ [INFO:] processed 15000/195503 spectrum_queries [ERROR:] Cannot initialize for sequence: nHEMVEESPGRc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_total_Slot2-36_1_8055_diatracer.81488.81488.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nFEDSFGVDPYc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_total_Slot2-36_1_8055_diatracer.82015.82015.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nDLGVPGLSSKVINAISAAAc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_total_Slot2-36_1_8055_diatracer.82033.82033.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nVNSMNSSAPEAGc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_total_Slot2-36_1_8055_diatracer.83811.83811.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nTAGAAALPHVPPGc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_total_Slot2-36_1_8055_diatracer.84090.84090.2 [INFO:] Please specify modification and rerun PTMProphet ... ​ [INFO:] processed 16000/195503 spectrum_queries [ERROR:] Cannot initialize for sequence: nPRGVASDGGAVRc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_total_Slot2-36_1_8055_diatracer.87730.87730.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nLKVEDALSYLc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_total_Slot2-36_1_8055_diatracer.88079.88079.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nTHLNDKYGYc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_total_Slot2-36_1_8055_diatracer.88758.88758.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nTTAQYYLDM[147]NTFTFDMSTAQc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_total_Slot2-36_1_8055_diatracer.89382.89382.4 [INFO:] Please specify modification and rerun PTMProphet ... ​ [INFO:] processed 17000/195503 spectrum_queries [ERROR:] Cannot initialize for sequence: nSTAQHQVGQRc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_total_Slot2-36_1_8055_diatracer.93912.93912.2 [INFO:] Please specify modification and rerun PTMProphet ... ​ [INFO:] processed 18000/195503 spectrum_queries [ERROR:] Cannot initialize for sequence: nC[160]ALLHSAAVQEYGYGNc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_total_Slot2-36_1_8055_diatracer.96948.96948.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nGALDKHSGSSNMLQALDQRVAAAc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_total_Slot2-36_1_8055_diatracer.97601.97601.4 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nEVEMAIIEDKDLFVAc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_total_Slot2-36_1_8055_diatracer.99845.99845.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nGMRPEVTLAC[160]LLLATAGC[160]FADLc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_total_Slot2-36_1_8055_diatracer.100068.100068.4 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nSRQGGSTSLNC[160]THAAVSc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_total_Slot2-36_1_8055_diatracer.100115.100115.3 [INFO:] Please specify modification and rerun PTMProphet ... ​ [INFO:] processed 19000/195503 spectrum_queries [ERROR:] Cannot initialize for sequence: nHGLVC[160]QEAWSc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_total_Slot2-36_1_8055_diatracer.100836.100836.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nFLGLLIFDSWGTHNAMWTINAc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_total_Slot2-36_1_8055_diatracer.101116.101116.4 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nSPGAVAPM[147]SPGLPc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_total_Slot2-36_1_8055_diatracer.101592.101592.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nATPSENLVPSSAc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_total_Slot2-36_1_8055_diatracer.103123.103123.2 [INFO:] Please specify modification and rerun PTMProphet ... ​ [INFO:] processed 20000/195503 spectrum_queries [ERROR:] Cannot initialize for sequence: nDINLASFIEQVAVSMTc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_total_Slot2-36_1_8055_diatracer.106046.106046.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nIEEEALSQPHc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_total_Slot2-36_1_8055_diatracer.107400.107400.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nVLQEYPAVSSAc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_total_Slot2-36_1_8055_diatracer.107724.107724.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nPASELSAQTAAGAc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_total_Slot2-36_1_8055_diatracer.108589.108589.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nAPVEGESQAETAc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_total_Slot2-36_1_8055_diatracer.109289.109289.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nLFAAGALGc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_total_Slot2-36_1_8055_diatracer.109845.109845.2 [INFO:] Please specify modification and rerun PTMProphet ... ​ [INFO:] processed 21000/195503 spectrum_queries [ERROR:] Cannot initialize for sequence: nPAVAAARLVVAMLATAc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_total_Slot2-36_1_8055_diatracer.113298.113298.4 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nESVQGAAc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_total_Slot2-36_1_8055_diatracer.113593.113593.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nLRVSANGc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_total_Slot2-36_1_8055_diatracer.113871.113871.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nLEQEEEEEERPEPRQSDc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_total_Slot2-36_1_8055_diatracer.115308.115308.2 [INFO:] Please specify modification and rerun PTMProphet ... ​ [INFO:] processed 22000/195503 spectrum_queries [ERROR:] Cannot initialize for sequence: nYILEGYSITDNSAASMLQVc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_total_Slot2-36_1_8055_diatracer.118874.118874.2 [INFO:] Please specify modification and rerun PTMProphet ... ​ [INFO:] processed 23000/195503 spectrum_queries [ERROR:] Cannot initialize for sequence: nVDLYGFIMALLEPFLC[160]SIHTEc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_total_Slot2-36_1_8055_diatracer.127422.127422.3 [INFO:] Please specify modification and rerun PTMProphet ... ​ [INFO:] processed 24000/195503 spectrum_queries [ERROR:] Cannot initialize for sequence: nPLPEQEQQPRGPRC[160]c[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_total_Slot2-36_1_8055_diatracer.132703.132703.2 [INFO:] Please specify modification and rerun PTMProphet ... ​ [INFO:] processed 25000/195503 spectrum_queries [ERROR:] Cannot initialize for sequence: nRELQQVTAGEAASIHc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_total_Slot2-36_1_8055_diatracer.137417.137417.2 [INFO:] Please specify modification and rerun PTMProphet ... ​ [INFO:] processed 27000/195503 spectrum_queries [ERROR:] Cannot initialize for sequence: nASDLLAWEQIFEVAVDEFTVSEc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_total_Slot2-36_1_8055_diatracer.147211.147211.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nLQGLEDGAGAGPAENAASc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_total_Slot2-36_1_8055_diatracer.148175.148175.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nRDGLTDSGLHVTYENc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_total_Slot2-36_1_8055_diatracer.149976.149976.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nPVDDPTAPSNLYIQEc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_total_Slot2-36_1_8055_diatracer.150976.150976.2 [INFO:] Please specify modification and rerun PTMProphet ... ​ [INFO:] processed 28000/195503 spectrum_queries [ERROR:] Cannot initialize for sequence: nEVVLGTGDMASTNLTRc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_total_Slot2-36_1_8055_diatracer.153963.153963.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nELLSGVSGMAIGAPGPATAc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_total_Slot2-36_1_8055_diatracer.154962.154962.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nAIWNVINWENVTERYMAC[160]KKc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_total_Slot2-36_1_8055_diatracer.154968.154968.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nTIDTTPSGGNTTPSGTGITLDTTLSATETTFEYc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_total_Slot2-36_1_8055_diatracer.156557.156557.4 [INFO:] Please specify modification and rerun PTMProphet ... ​ [INFO:] processed 29000/195503 spectrum_queries [ERROR:] Cannot initialize for sequence: nGTGGVDTAAVGGVFDVSNAc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_total_Slot2-36_1_8055_diatracer.157684.157684.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nELIPSLC[160]LPEc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_total_Slot2-36_1_8055_diatracer.159861.159861.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nYTKGDLGC[160]VPGc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_total_Slot2-36_1_8055_diatracer.159871.159871.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nTFSLFVPC[160]SPGc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_total_Slot2-36_1_8055_diatracer.160030.160030.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nPIGLQDLLQPQPQEISTLGPVLSc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_total_Slot2-36_1_8055_diatracer.160841.160841.4 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nGLSSTTC[160]SFSANc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_total_Slot2-36_1_8055_diatracer.160924.160924.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nPPLNGDSLTEYEAGVC[160]Ec[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_total_Slot2-36_1_8055_diatracer.161846.161846.3 [INFO:] Please specify modification and rerun PTMProphet ... ​ [INFO:] processed 30000/195503 spectrum_queries [ERROR:] Cannot initialize for sequence: nKAVQGGGATPVVGAVQGPVPc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_total_Slot2-36_1_8055_diatracer.162192.162192.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nHVLSNGAGTSDRc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_total_Slot2-36_1_8055_diatracer.162553.162553.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nLADVAAQAAWPPALAPWGc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_total_Slot2-36_1_8055_diatracer.163063.163063.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nFDQINAVDERc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_total_Slot2-36_1_8055_diatracer.164574.164574.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nLQGGGGELGFMGADAAYAVc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_total_Slot2-36_1_8055_diatracer.164724.164724.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nNIAQNHC[160]C[160]NMFQAGLHNALMKc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_total_Slot2-36_1_8055_diatracer.166091.166091.4 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nAAHQPDSVASGEAc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_total_Slot2-36_1_8055_diatracer.166352.166352.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nQKMAPTSQFFLASGTAQAc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_total_Slot2-36_1_8055_diatracer.166586.166586.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nLPC[160]PGAAVAAEGMc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_total_Slot2-36_1_8055_diatracer.166683.166683.2 [INFO:] Please specify modification and rerun PTMProphet ... ​ [INFO:] processed 31000/195503 spectrum_queries [ERROR:] Cannot initialize for sequence: nFLDLNKNPINc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_total_Slot2-36_1_8055_diatracer.168743.168743.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nLLRIQDDGTLLYTM[147]Rc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_total_Slot2-36_1_8055_diatracer.169653.169653.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nFLPIHENTAAAM[147]PRAQc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_total_Slot2-36_1_8055_diatracer.169933.169933.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nDLQEPVVPDPDVSIYLPVLKTMc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_total_Slot2-36_1_8055_diatracer.170275.170275.4 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nSDPAAIVAGAGASAAc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_total_Slot2-36_1_8055_diatracer.170849.170849.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nDM[147]KLVLIGHSIc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_total_Slot2-36_1_8055_diatracer.171733.171733.2 [INFO:] Please specify modification and rerun PTMProphet ... ​ [INFO:] processed 32000/195503 spectrum_queries [ERROR:] Cannot initialize for sequence: nPEVDDGTSEEENESDSSSC[160]SSPDc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_total_Slot2-36_1_8055_diatracer.172697.172697.4 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nSQEGLTPSSIYc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_total_Slot2-36_1_8055_diatracer.173394.173394.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nIMELVNIASELPTLEAEc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_total_Slot2-36_1_8055_diatracer.173838.173838.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nNIQPTDIMASEAEFTVSTVC[160]TAVc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_total_Slot2-36_1_8055_diatracer.174037.174037.4 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nVEQAAAAASPSPSSFGTPFc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_total_Slot2-36_1_8055_diatracer.174977.174977.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nVSSSVLPKAAFSc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_total_Slot2-36_1_8055_diatracer.176238.176238.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nPTGLGRRQFGFc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_total_Slot2-36_1_8055_diatracer.176355.176355.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: n[43]QANVPSALPSLPAGSGC[160]VIc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_total_Slot2-36_1_8055_diatracer.176609.176609.3 [INFO:] Please specify modification and rerun PTMProphet ... ​ [INFO:] processed 33000/195503 spectrum_queries [ERROR:] Cannot initialize for sequence: nSQEGLTPSSIYc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_total_Slot2-36_1_8055_diatracer.181007.181007.2 [INFO:] Please specify modification and rerun PTMProphet ... ​ [INFO:] processed 34000/195503 spectrum_queries [ERROR:] Cannot initialize for sequence: nDVGGLEVLINLLETDEVc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_total_Slot2-36_1_8055_diatracer.184804.184804.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nQHGPGTSPGPARc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_total_Slot2-36_1_8055_diatracer.184973.184973.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nVYIATQGPM[147]PNTVSDFWEMVWc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_total_Slot2-36_1_8055_diatracer.185774.185774.4 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nLLQTC[160]FSSPADDSMDRc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_total_Slot2-36_1_8055_diatracer.186907.186907.3 [INFO:] Please specify modification and rerun PTMProphet ... ​ [INFO:] processed 35000/195503 spectrum_queries [ERROR:] Cannot initialize for sequence: nDTVPRAPSQFPc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_total_Slot2-36_1_8055_diatracer.190317.190317.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nPLPSDIAVIMYTSGSTGLc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_total_Slot2-36_1_8055_diatracer.191226.191226.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nAGEPGDSGNWPSGc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_total_Slot2-36_1_8055_diatracer.191374.191374.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nQLSDGQPPPPAQc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_total_Slot2-36_1_8055_diatracer.191383.191383.2 [INFO:] Please specify modification and rerun PTMProphet ... ​ [INFO:] processed 37000/195503 spectrum_queries [ERROR:] Cannot initialize for sequence: nQAEAIMVRGQGHQALGAVPSC[160]EGVc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_total_Slot2-36_1_8055_diatracer.198085.198085.4 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nNILERNQTHAc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_total_Slot2-36_1_8055_diatracer.199652.199652.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nIPSALTQSPIC[160]LREHPc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_total_Slot2-36_1_8055_diatracer.201305.201305.3 [INFO:] Please specify modification and rerun PTMProphet ... ​ [INFO:] processed 38000/195503 spectrum_queries [ERROR:] Cannot initialize for sequence: nKAVQGGGATPVVGAVQGPVPc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_total_Slot2-36_1_8055_diatracer.203110.203110.3 [INFO:] Please specify modification and rerun PTMProphet ... ​ [INFO:] processed 39000/195503 spectrum_queries [ERROR:] Cannot initialize for sequence: nGFLM[147]EGLPSASASGKTEVc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_total_Slot2-36_1_8055_diatracer.208105.208105.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nAAVGC[160]SLSNGGAEc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_total_Slot2-36_1_8055_diatracer.209094.209094.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nPDLESGQTGRTWLLLLPLLLGLGc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_total_Slot2-36_1_8055_diatracer.209370.209370.4 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nIDGVDTHLTVSc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_total_Slot2-36_1_8055_diatracer.210099.210099.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nGEVAAWAAIAWSVIASLDc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_total_Slot2-36_1_8055_diatracer.210362.210362.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nKEPDQASGDLNc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_total_Slot2-36_1_8055_diatracer.211173.211173.2 [INFO:] Please specify modification and rerun PTMProphet ... ​ [INFO:] processed 40000/195503 spectrum_queries [ERROR:] Cannot initialize for sequence: nSC[160]GLGPSSAEEEc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_total_Slot2-36_1_8055_diatracer.213403.213403.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nVEQAAAAASPSPSSFGTPFc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_total_Slot2-36_1_8055_diatracer.215427.215427.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nGEALANIADMASAc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_total_Slot2-36_1_8055_diatracer.216792.216792.2 [INFO:] Please specify modification and rerun PTMProphet ... ​ [INFO:] processed 41000/195503 spectrum_queries [ERROR:] Cannot initialize for sequence: nPAALAGQPASPPGSc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_total_Slot2-36_1_8055_diatracer.219332.219332.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nLNQNGGNAc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_total_Slot2-36_1_8055_diatracer.223269.223269.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nVHADIQNc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_total_Slot2-36_1_8055_diatracer.223353.223353.2 [INFO:] Please specify modification and rerun PTMProphet ... ​ [INFO:] processed 42000/195503 spectrum_queries [ERROR:] Cannot initialize for sequence: nPMGPAGPAAc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_total_Slot2-36_1_8055_diatracer.224707.224707.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nVC[160]GC[160]VNGc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_total_Slot2-36_1_8055_diatracer.225775.225775.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nSM[147]SLPSHc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_total_Slot2-36_1_8055_diatracer.227081.227081.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nSRTLMRASLATc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_total_Slot2-36_1_8055_diatracer.227312.227312.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nHGANARLc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_total_Slot2-36_1_8055_diatracer.227751.227751.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nSPSGRSLGNSESPIVGPc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_total_Slot2-36_1_8055_diatracer.227925.227925.4 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nFEDSFGVDPYc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_total_Slot2-36_1_8055_diatracer.228539.228539.3 [INFO:] Please specify modification and rerun PTMProphet ... ​ [INFO:] processed 43000/195503 spectrum_queries [ERROR:] Cannot initialize for sequence: nIYLTADNLVLNLQD[202]ESFTc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_total_Slot2-36_1_8055_diatracer.231173.231173.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nIYLTADNLVLNLQD[202]ESFTc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_total_Slot2-36_1_8055_diatracer.232593.232593.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nKTTASSQENHSSQTDNITLGc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_total_Slot2-36_1_8055_diatracer.233393.233393.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nDHISVGLASRSSSALGNSAWPSc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_total_Slot2-36_1_8055_diatracer.235428.235428.2 [INFO:] Please specify modification and rerun PTMProphet ... ​ [INFO:] processed 44000/195503 spectrum_queries [ERROR:] Cannot initialize for sequence: nQMFSDAGSGDDALDGDDDLVIDIPEc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_total_Slot2-36_1_8055_diatracer.239737.239737.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nIHQQEHADDSHLFAVc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_total_Slot2-36_1_8055_diatracer.240269.240269.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nLNLEAINYM[147]AADGDFKIKC[160]VAFDc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_total_Slot2-36_1_8055_diatracer.241594.241594.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nNVESWLAPVSVGGSGGSAc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_total_Slot2-36_1_8055_diatracer.242308.242308.2 [INFO:] Please specify modification and rerun PTMProphet ... ​ [INFO:] processed 46000/195503 spectrum_queries [ERROR:] Cannot initialize for sequence: n[43]MAQAIEPMVGMESFAAc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_total_Slot2-36_1_8055_diatracer.249474.249474.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nFGADLLATDYQGNTALc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_total_Slot2-36_1_8055_diatracer.251871.251871.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nFGADLLATDYQGNTALc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_total_Slot2-36_1_8055_diatracer.253268.253268.2 [INFO:] Please specify modification and rerun PTMProphet ... ​ [INFO:] processed 47000/195503 spectrum_queries [ERROR:] Cannot initialize for sequence: nINSAVYSADESLSAHKc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_total_Slot2-36_1_8055_diatracer.253953.253953.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nELLSTITDPSVIVMADc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_total_Slot2-36_1_8055_diatracer.254259.254259.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nAASAAGAAGSAGGSSGAAGRRc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_total_Slot2-36_1_8055_diatracer.257285.257285.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nGFLDKQVYTHVHRANGGAGQSPQAGc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_total_Slot2-36_1_8055_diatracer.257738.257738.3 [INFO:] Please specify modification and rerun PTMProphet ... ​ [INFO:] processed 48000/195503 spectrum_queries [ERROR:] Cannot initialize for sequence: nGFLDKQVYTHVHRANGGAGQSPQAGc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_total_Slot2-36_1_8055_diatracer.260526.260526.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nVPAFYYIPQANDC[160]Lc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_total_Slot2-36_1_8055_diatracer.261616.261616.2 [INFO:] Please specify modification and rerun PTMProphet ... ​ [INFO:] processed 49000/195503 spectrum_queries [ERROR:] Cannot initialize for sequence: nMEGDSVLLEVDGEEVLc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_total_Slot2-36_1_8055_diatracer.267726.267726.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nMVTEVTVTDSDEEVTSc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_total_Slot2-36_1_8055_diatracer.269444.269444.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nPIAFMEASVGTQRGTEc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_total_Slot2-36_1_8055_diatracer.270752.270752.2 [INFO:] Please specify modification and rerun PTMProphet ... ​ [INFO:] processed 50000/195503 spectrum_queries [ERROR:] Cannot initialize for sequence: nVQEILLPQPPEc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_total_Slot2-36_1_8055_diatracer.271866.271866.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nATFLEDVAGSGEAc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_total_Slot2-36_1_8055_diatracer.272025.272025.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nDMLLSGSTFNWPYGSGQc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_total_Slot2-36_1_8055_diatracer.273915.273915.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nKELNSANSLHEc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_total_Slot2-36_1_8055_diatracer.275294.275294.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nSLASQFKAPAPSTVRSGWAc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_total_Slot2-36_1_8055_diatracer.275814.275814.3 [INFO:] Please specify modification and rerun PTMProphet ... ​ [INFO:] processed 51000/195503 spectrum_queries [ERROR:] Cannot initialize for sequence: nAVQLTQAM[147]DTSTVGVLLAAc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_total_Slot2-36_1_8055_diatracer.279086.279086.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nHGGIRDKIM[147]SSc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_total_Slot2-36_1_8055_diatracer.279262.279262.2 [INFO:] Please specify modification and rerun PTMProphet ... ​ [INFO:] processed 52000/195503 spectrum_queries [ERROR:] Cannot initialize for sequence: nMPEAGEEQPQVc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_total_Slot2-36_1_8055_diatracer.281310.281310.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nQIEHDKREMIFEVLAc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_total_Slot2-36_1_8055_diatracer.283929.283929.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nM[147]DDLLAEM[147]QQIEQSNFRQAPQc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_total_Slot2-36_1_8055_diatracer.284309.284309.4 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nLAGEDLGALAEDAc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_total_Slot2-36_1_8055_diatracer.285695.285695.2 [INFO:] Please specify modification and rerun PTMProphet ... ​ [INFO:] processed 53000/195503 spectrum_queries [ERROR:] Cannot initialize for sequence: nSDSSRPYSQEKc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_total_Slot2-36_1_8055_diatracer.287964.287964.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nSSGPAHGGC[160]QIDGHFPKYc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_total_Slot2-36_1_8055_diatracer.288374.288374.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nPVQENLYGYKc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_total_Slot2-36_1_8055_diatracer.289056.289056.2 [INFO:] Please specify modification and rerun PTMProphet ... ​ [INFO:] processed 54000/195503 spectrum_queries [ERROR:] Cannot initialize for sequence: nRYVLGFVASPKc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_total_Slot2-36_1_8055_diatracer.292654.292654.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nTLAWPSSLDMVAc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_total_Slot2-36_1_8055_diatracer.293297.293297.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nKHGRC[160]EELSIFTESDAc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_total_Slot2-36_1_8055_diatracer.294776.294776.3 [INFO:] Please specify modification and rerun PTMProphet ... ​ [INFO:] processed 55000/195503 spectrum_queries [ERROR:] Cannot initialize for sequence: nESLMKVMPYVDILFGNETTYHIc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_total_Slot2-36_1_8055_diatracer.300467.300467.4 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nLIHAELVGPTQLAPSC[160]VTc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_total_Slot2-36_1_8055_diatracer.300756.300756.3 [INFO:] Please specify modification and rerun PTMProphet ... ​ [INFO:] processed 56000/195503 spectrum_queries [ERROR:] Cannot initialize for sequence: nTILSGYHRIVQQNAALSc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_total_Slot2-36_1_8055_diatracer.304743.304743.3 [INFO:] Please specify modification and rerun PTMProphet ... ​ [INFO:] processed 57000/195503 spectrum_queries [ERROR:] Cannot initialize for sequence: nNSLDSSDSDSALc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_total_Slot2-36_1_8055_diatracer.309154.309154.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nPAQVGDSFGPTWc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_total_Slot2-36_1_8055_diatracer.309673.309673.2 [INFO:] Please specify modification and rerun PTMProphet ... ​ [INFO:] processed 58000/195503 spectrum_queries [ERROR:] Cannot initialize for sequence: nVNGASATGPELAGASVAGPGPAATSGGAGVAAc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_total_Slot2-36_1_8055_diatracer.313108.313108.4 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nYFPGFPSSYFPDHPTSSc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_total_Slot2-36_1_8055_diatracer.313135.313135.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nNISLNASMEVYc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_total_Slot2-36_1_8055_diatracer.313295.313295.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nAEGGGGGVGPPAPETc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_total_Slot2-36_1_8055_diatracer.314000.314000.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nFM[147]SVGGPAGVSC[160]SAGGPGGGAAAPC[160]PGGASc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_total_Slot2-36_1_8055_diatracer.314665.314665.4 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nC[160]ILAGDHKQLPPTTVSHc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_total_Slot2-36_1_8055_diatracer.314832.314832.3 [INFO:] Please specify modification and rerun PTMProphet ... ​ [INFO:] processed 59000/195503 spectrum_queries [ERROR:] Cannot initialize for sequence: nFRC[160]LQQC[160]LLc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_total_Slot2-36_1_8055_diatracer.318345.318345.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nEHFSLLFSYISSISTSMc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_total_Slot2-36_1_8055_diatracer.318551.318551.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nLSYTTISTLGPGc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_total_Slot2-36_1_8055_diatracer.319464.319464.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nTVIQEALALDRc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_total_Slot2-36_1_8055_diatracer.320621.320621.2 [INFO:] Please specify modification and rerun PTMProphet ... ​ [INFO:] processed 60000/195503 spectrum_queries [ERROR:] Cannot initialize for sequence: nRASQSSLESSTGPPC[160]IRSc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_total_Slot2-36_1_8055_diatracer.321521.321521.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nHMLLLAIQEC[160]SEGFGLAc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_total_Slot2-36_1_8055_diatracer.323235.323235.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nVAPGAERAPPPAPTARGSAGAc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_total_Slot2-36_1_8055_diatracer.326166.326166.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nMDLNKSLTELAPVFEQIc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_total_Slot2-36_1_8055_diatracer.326207.326207.3 [INFO:] Please specify modification and rerun PTMProphet ... ​ [INFO:] processed 61000/195503 spectrum_queries [ERROR:] Cannot initialize for sequence: nFDLTVRTQKQGDDSSEWGNSFFc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_total_Slot2-36_1_8055_diatracer.327484.327484.4 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nSMVAVMDSDTTGKLGFEEc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_total_Slot2-36_1_8055_diatracer.327683.327683.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nHSGFGSIEGQPHPTAC[160]VC[160]c[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_total_Slot2-36_1_8055_diatracer.328348.328348.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nQPVSPEPGPDADEDGPVLMc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_total_Slot2-36_1_8055_diatracer.328533.328533.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nNTC[160]IIYESHVc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_total_Slot2-36_1_8055_diatracer.328569.328569.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nIHEMLQPGQDQc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_total_Slot2-36_1_8055_diatracer.329216.329216.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nQGAGAPTAPc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_total_Slot2-36_1_8055_diatracer.330565.330565.2 [INFO:] Please specify modification and rerun PTMProphet ... ​ [INFO:] processed 62000/195503 spectrum_queries [ERROR:] Cannot initialize for sequence: nRYVLGFVASPKc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_total_Slot2-36_1_8055_diatracer.337045.337045.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nANDLSGVAGc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_total_Slot2-36_1_8055_diatracer.337100.337100.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nDTYDALHMQALPPRc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_total_Slot2-36_1_8055_diatracer.337419.337419.4 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nLSPATAPAVc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_total_Slot2-36_1_8055_diatracer.337600.337600.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nMEGAQAAAVc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_total_Slot2-36_1_8055_diatracer.338071.338071.2 [INFO:] Please specify modification and rerun PTMProphet ... ​ [INFO:] processed 63000/195503 spectrum_queries [ERROR:] Cannot initialize for sequence: nFAEMNPPRQGTc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_total_Slot2-36_1_8055_diatracer.340044.340044.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nTNATVLSDc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_total_Slot2-36_1_8055_diatracer.340473.340473.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nALPGQPGGFc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_total_Slot2-36_1_8055_diatracer.341874.341874.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nWTGAFNPc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_total_Slot2-36_1_8055_diatracer.342572.342572.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nPDGDIGPSSc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_total_Slot2-36_1_8055_diatracer.342914.342914.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nC[160]TTPSSGLQRPc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_total_Slot2-36_1_8055_diatracer.343319.343319.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nNAPLC[160]PAPc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_total_Slot2-36_1_8055_diatracer.344650.344650.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nEVQDASAQc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_total_Slot2-36_1_8055_diatracer.344830.344830.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nQGAGAPTAPc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_total_Slot2-36_1_8055_diatracer.345065.345065.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nPSVLRTTELGGAAPSPEc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_total_Slot2-36_1_8055_diatracer.345190.345190.4 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nHLLNGVQc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_total_Slot2-36_1_8055_diatracer.345382.345382.2 [INFO:] Please specify modification and rerun PTMProphet ... ​ [INFO:] processed 64000/195503 spectrum_queries [ERROR:] Cannot initialize for sequence: nNTLLDQGc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_total_Slot2-36_1_8055_diatracer.345937.345937.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nAPPSSSVTGAHVAc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_total_Slot2-36_1_8055_diatracer.347864.347864.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nKKEYTDVATGIc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_total_Slot2-36_1_8055_diatracer.348398.348398.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nDLSIC[160]PHc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_total_Slot2-36_1_8055_diatracer.348559.348559.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nQALASNFTVKVc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_total_Slot2-36_1_8055_diatracer.348816.348816.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nAVHVFKSc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_total_Slot2-36_1_8055_diatracer.349395.349395.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nFAEMNPPRQGTc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_total_Slot2-36_1_8055_diatracer.349696.349696.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nGGVQC[160]QTSc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_total_Slot2-36_1_8055_diatracer.351304.351304.2 [INFO:] Please specify modification and rerun PTMProphet ... ​ [INFO:] processed 65000/195503 spectrum_queries [ERROR:] Cannot initialize for sequence: nEVTVDTTLAGYHLPKNISPDc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_total_Slot2-36_1_8055_diatracer.355314.355314.2 [INFO:] Please specify modification and rerun PTMProphet ... ​ [INFO:] processed 67000/195503 spectrum_queries [ERROR:] Cannot initialize for sequence: nEKLAPVPFFSLLQYEc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_total_Slot2-36_1_8055_diatracer.363678.363678.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nQPHQPSPGTAPAERPASLLYLFAPDc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_total_Slot2-36_1_8055_diatracer.366687.366687.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nAGESLLSFVVQDGAEVPc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_total_Slot2-36_1_8055_diatracer.368003.368003.2 [INFO:] Please specify modification and rerun PTMProphet ... ​ [INFO:] processed 68000/195503 spectrum_queries [ERROR:] Cannot initialize for sequence: nEFVFKEPQQQRGC[160]Vc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_total_Slot2-36_1_8055_diatracer.372610.372610.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nVAAAERAEDGAAGGAGALLLVGVAAAVAVAEc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_total_Slot2-36_1_8055_diatracer.374921.374921.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nC[160]VTKSVASGTVSHQAATIRDTLSQGSc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_total_Slot2-36_1_8055_diatracer.375182.375182.3 [INFO:] Please specify modification and rerun PTMProphet ... ​ [INFO:] processed 69000/195503 spectrum_queries [ERROR:] Cannot initialize for sequence: nLFTDVIIC[160]VEGKEFPc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_total_Slot2-36_1_8055_diatracer.377842.377842.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nQPHQPSPGTAPAERPASLLYLFAPDc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_total_Slot2-36_1_8055_diatracer.378780.378780.3 [INFO:] Please specify modification and rerun PTMProphet ... ​ [INFO:] processed 70000/195503 spectrum_queries [ERROR:] Cannot initialize for sequence: nLAAGQGAGAGQGGGAGGGLGGSGAc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_total_Slot2-36_1_8055_diatracer.384650.384650.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nPGAQLYQFRYVNRQGQVC[160]GQSPPc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_total_Slot2-36_1_8055_diatracer.386140.386140.4 [INFO:] Please specify modification and rerun PTMProphet ... ​ [INFO:] processed 71000/195503 spectrum_queries [ERROR:] Cannot initialize for sequence: nAAIEETLLLESSc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_total_Slot2-36_1_8055_diatracer.389268.389268.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nLQVTSIVHSGSWc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_total_Slot2-36_1_8055_diatracer.391183.391183.2 [INFO:] Please specify modification and rerun PTMProphet ... ​ [INFO:] processed 72000/195503 spectrum_queries [ERROR:] Cannot initialize for sequence: nEAELSLLLHNVVLLSTNYLGTRRc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_total_Slot2-36_1_8055_diatracer.393405.393405.4 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nSQDLMINSSQFc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_total_Slot2-36_1_8055_diatracer.393470.393470.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nYGKDATNVGDEGGc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_total_Slot2-36_1_8055_diatracer.394112.394112.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nAVEC[160]QPEGTTQDc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_total_Slot2-36_1_8055_diatracer.394528.394528.2 [INFO:] Please specify modification and rerun PTMProphet ... ​ [INFO:] processed 73000/195503 spectrum_queries [ERROR:] Cannot initialize for sequence: nLYTQFQEPYLc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_total_Slot2-36_1_8055_diatracer.397725.397725.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nTPALAALAALGAPGPAPTAASSPc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_total_Slot2-36_1_8055_diatracer.399157.399157.3 [INFO:] Please specify modification and rerun PTMProphet ... ​ [INFO:] processed 74000/195503 spectrum_queries [ERROR:] Cannot initialize for sequence: nIKEAPETPETEPc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_total_Slot2-36_1_8055_diatracer.402219.402219.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nMIQLSIESPLYSGSSNAGSTc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_total_Slot2-36_1_8055_diatracer.402468.402468.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nWQDIIKEVKFc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_total_Slot2-36_1_8055_diatracer.402599.402599.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nDALVAPAGEPYSGAc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_total_Slot2-36_1_8055_diatracer.403654.403654.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nWQDIIKEVKFc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_total_Slot2-36_1_8055_diatracer.404992.404992.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nNC[160]LC[160]GGLWWRVPLSYPc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_total_Slot2-36_1_8055_diatracer.405348.405348.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nASGAASSVAFPASWc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_total_Slot2-36_1_8055_diatracer.405708.405708.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nKPLDGEYFTLQc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_total_Slot2-36_1_8055_diatracer.405754.405754.2 [INFO:] Please specify modification and rerun PTMProphet ... ​ [INFO:] processed 75000/195503 spectrum_queries [ERROR:] Cannot initialize for sequence: nQLGGLQEAEWVAc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_total_Slot2-36_1_8055_diatracer.407572.407572.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nKQNDVFGEAEQc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_total_Slot2-36_1_8055_diatracer.407915.407915.2 [INFO:] Please specify modification and rerun PTMProphet ... ​ [INFO:] processed 76000/195503 spectrum_queries [ERROR:] Cannot initialize for sequence: nGSTPYSQDSAYSSc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_total_Slot2-36_1_8055_diatracer.412087.412087.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nAQAPSC[160]QGERMSTISC[160]C[160]c[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_total_Slot2-36_1_8055_diatracer.412786.412786.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: n[43]GYKLQDLTDVQc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_total_Slot2-36_1_8055_diatracer.415437.415437.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nRLVLSWAARPLc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_total_Slot2-36_1_8055_diatracer.415794.415794.2 [INFO:] Please specify modification and rerun PTMProphet ... ​ [INFO:] processed 78000/195503 spectrum_queries [ERROR:] Cannot initialize for sequence: nISC[160]RSLSQPSPSPAGGGSQLc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_total_Slot2-36_1_8055_diatracer.422274.422274.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nSPTQSQITVNGNSc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_total_Slot2-36_1_8055_diatracer.423363.423363.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nEVWVSAVEAQSLc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_total_Slot2-36_1_8055_diatracer.425120.425120.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: n[43]MSVGVSTSAPLSPTSGTSVGMSTFSIMc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_total_Slot2-36_1_8055_diatracer.425912.425912.4 [INFO:] Please specify modification and rerun PTMProphet ... ​ [INFO:] processed 79000/195503 spectrum_queries [ERROR:] Cannot initialize for sequence: nMNRSFLVQAMTEHDQSVc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_total_Slot2-36_1_8055_diatracer.427206.427206.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nMAEYLFALVYPLNPQDGc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_total_Slot2-36_1_8055_diatracer.427248.427248.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nSYPGHVQPATARc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_total_Slot2-36_1_8055_diatracer.427779.427779.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nHLC[160]LSNC[160]IVATASAILDQc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_total_Slot2-36_1_8055_diatracer.428564.428564.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nNPWPSNLTLVSTNGSSGC[160]Gc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_total_Slot2-36_1_8055_diatracer.429605.429605.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nLQTGWSVHTYQc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_total_Slot2-36_1_8055_diatracer.429815.429815.2 [INFO:] Please specify modification and rerun PTMProphet ... ​ [INFO:] processed 80000/195503 spectrum_queries [ERROR:] Cannot initialize for sequence: nQLGGLQEAEWVAc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_total_Slot2-36_1_8055_diatracer.433956.433956.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nSPAEC[160]REEHSKTPEERc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_total_Slot2-36_1_8055_diatracer.434366.434366.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nGSQPSGELLASFELIQREc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_total_Slot2-36_1_8055_diatracer.434853.434853.3 [INFO:] Please specify modification and rerun PTMProphet ... ​ [INFO:] processed 81000/195503 spectrum_queries [ERROR:] Cannot initialize for sequence: n[43]GYKLQDLTDVQc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_total_Slot2-36_1_8055_diatracer.437049.437049.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nGPE[172]EGGGKSAGGE[172]Ac[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_total_Slot2-36_1_8055_diatracer.437763.437763.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nMQQEDQEGPPTc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_total_Slot2-36_1_8055_diatracer.438606.438606.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nSPAEC[160]REEHSKTPEERc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_total_Slot2-36_1_8055_diatracer.439157.439157.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nWLSSLPQRFVSLLKGAFAAPTLVWc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_total_Slot2-36_1_8055_diatracer.440701.440701.4 [INFO:] Please specify modification and rerun PTMProphet ... ​ [INFO:] processed 82000/195503 spectrum_queries [ERROR:] Cannot initialize for sequence: nGPALPLLRc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_total_Slot2-36_1_8055_diatracer.441953.441953.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nEAVDAAAAPc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_total_Slot2-36_1_8055_diatracer.444019.444019.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nNWGGPGPQGFWLc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_total_Slot2-36_1_8055_diatracer.445466.445466.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nTVSYLGLEc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_total_Slot2-36_1_8055_diatracer.446071.446071.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nAWGGTC[160]GAAc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_total_Slot2-36_1_8055_diatracer.446623.446623.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nGPALPLLRc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_total_Slot2-36_1_8055_diatracer.447484.447484.2 [INFO:] Please specify modification and rerun PTMProphet ... ​ [INFO:] processed 83000/195503 spectrum_queries [ERROR:] Cannot initialize for sequence: nMAGSTLTFRTEIc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_total_Slot2-36_1_8055_diatracer.449709.449709.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nHSLTHTPRQDFc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_total_Slot2-36_1_8055_diatracer.451289.451289.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nAATKSFQAGc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_total_Slot2-36_1_8055_diatracer.451414.451414.2 [INFO:] Please specify modification and rerun PTMProphet ... ​ [INFO:] processed 84000/195503 spectrum_queries [ERROR:] Cannot initialize for sequence: nTSKSAADGFc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_total_Slot2-36_1_8055_diatracer.454422.454422.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nDGAVPAAAGEc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_total_Slot2-36_1_8055_diatracer.454872.454872.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nFAAGSQLAELLSDc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_total_Slot2-36_1_8055_diatracer.456088.456088.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nAATKSFQAGc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_total_Slot2-36_1_8055_diatracer.457180.457180.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nAAHPTPHLHTLGLc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_total_Slot2-36_1_8055_diatracer.458937.458937.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nQAPSVSPGAc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_total_Slot2-36_1_8055_diatracer.458999.458999.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nTIGSVSRAAc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_total_Slot2-36_1_8055_diatracer.459336.459336.2 [INFO:] Please specify modification and rerun PTMProphet ... ​ [INFO:] processed 85000/195503 spectrum_queries [ERROR:] Cannot initialize for sequence: nEIAAPQPPGLTSGEc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_total_Slot2-36_1_8055_diatracer.461731.461731.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nGGGGGGVGGAGSAc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_total_Slot2-36_1_8055_diatracer.461962.461962.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nTC[160]IALILSFLLAc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_total_Slot2-36_1_8055_diatracer.462524.462524.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nGPALPLLRc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_total_Slot2-36_1_8055_diatracer.462542.462542.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nHILHSSKc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_total_Slot2-36_1_8055_diatracer.464887.464887.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nPEGVPRIDc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_total_Slot2-36_1_8055_diatracer.465523.465523.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nDQPAALSDc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_total_Slot2-36_1_8055_diatracer.466203.466203.2 [INFO:] Please specify modification and rerun PTMProphet ... ​ [INFO:] processed 86000/195503 spectrum_queries [ERROR:] Cannot initialize for sequence: nLVTATAAATc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_total_Slot2-36_1_8055_diatracer.466281.466281.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nLPGKQVQEc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_total_Slot2-36_1_8055_diatracer.467147.467147.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nENYAAAGAVM[147]SFDc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_total_Slot2-36_1_8055_diatracer.468406.468406.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nGAPATLHPAHVQC[160]AHRc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_total_Slot2-36_1_8055_diatracer.468955.468955.4 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nQLAMVMRYGVNc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_total_Slot2-36_1_8055_diatracer.469209.469209.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nEITHLPDc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_total_Slot2-36_1_8055_diatracer.469232.469232.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nC[160]SSLPYAEGFAYc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_total_Slot2-36_1_8055_diatracer.469720.469720.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nEGAGELEALc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_total_Slot2-36_1_8055_diatracer.469734.469734.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nNSELAPGMc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_total_Slot2-36_1_8055_diatracer.470354.470354.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nAEDADVPRc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_total_Slot2-36_1_8055_diatracer.470739.470739.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nNWGGPGPQGFWLc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_total_Slot2-36_1_8055_diatracer.471822.471822.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nGPALPLLRc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_total_Slot2-36_1_8055_diatracer.472454.472454.2 [INFO:] Please specify modification and rerun PTMProphet ... ​ [INFO:] processed 87000/195503 spectrum_queries [ERROR:] Cannot initialize for sequence: nNNLSFIETSALDSTNVE[172]EAFc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_total_Slot2-36_1_8055_diatracer.474844.474844.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nNNLSFIETSALDSTNVE[172]EAFc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_total_Slot2-36_1_8055_diatracer.475850.475850.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nGGSYSQAASSDSAQGSD[158]VSLTAC[160]c[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_total_Slot2-36_1_8055_diatracer.476427.476427.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nGGSYSQAASSDSAQGSD[158]VSLTAC[160]c[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_total_Slot2-36_1_8055_diatracer.477235.477235.2 [INFO:] Please specify modification and rerun PTMProphet ... ​ [INFO:] processed 88000/195503 spectrum_queries [ERROR:] Cannot initialize for sequence: nTASLARSWDSMPPRWSc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_total_Slot2-36_1_8055_diatracer.480737.480737.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nDQMQQLLTQVVSTLDQVTKPDTEAc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_total_Slot2-36_1_8055_diatracer.482045.482045.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nRVEVNGEHATVRFAGVVPPVADGVLLC[160]HPGWSAVAc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_total_Slot2-36_1_8055_diatracer.483794.483794.4 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nLNHQSSYSSAVPSISAC[160]c[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_total_Slot2-36_1_8055_diatracer.484224.484224.2 [INFO:] Please specify modification and rerun PTMProphet ... ​ [INFO:] processed 89000/195503 spectrum_queries [ERROR:] Cannot initialize for sequence: nFNGKLC[160]ADC[160]SVGEHRSc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_total_Slot2-36_1_8055_diatracer.485937.485937.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nLDQKDLVLPTQALPASPc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_total_Slot2-36_1_8055_diatracer.486242.486242.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nNPHGPLSASNAGPSIKC[160]Ac[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_total_Slot2-36_1_8055_diatracer.486798.486798.2 [INFO:] Please specify modification and rerun PTMProphet ... ​ [INFO:] processed 90000/195503 spectrum_queries [ERROR:] Cannot initialize for sequence: nGLQEELAAALEPGPGPVGPc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_total_Slot2-36_1_8055_diatracer.492919.492919.2 [INFO:] Please specify modification and rerun PTMProphet ... ​ [INFO:] processed 91000/195503 spectrum_queries [ERROR:] Cannot initialize for sequence: nGNTLYVYGEDMTPTLLRGAFSPFGNIIDLSM[147]DPc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_total_Slot2-36_1_8055_diatracer.499797.499797.4 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nYQSVTLLLSKLC[160]ATSDc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_total_Slot2-36_1_8055_diatracer.502666.502666.2 [INFO:] Please specify modification and rerun PTMProphet ... ​ [INFO:] processed 92000/195503 spectrum_queries [ERROR:] Cannot initialize for sequence: nAVLYFTGEAIEDDDNPDMc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_total_Slot2-36_1_8055_diatracer.505547.505547.3 [INFO:] Please specify modification and rerun PTMProphet ... ​ [INFO:] processed 93000/195503 spectrum_queries [ERROR:] Cannot initialize for sequence: nLEGGVAYNVIPATMSASFDFc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_total_Slot2-36_1_8055_diatracer.508609.508609.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nISNIIMSIESSDM[147]SVTVTHc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_total_Slot2-36_1_8055_diatracer.508718.508718.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nEWVPESAPVLEQDPTTRNc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_total_Slot2-36_1_8055_diatracer.510258.510258.3 [INFO:] Please specify modification and rerun PTMProphet ... ​ [INFO:] processed 94000/195503 spectrum_queries [ERROR:] Cannot initialize for sequence: nQSFHMAM[147]GNPSEFFVDVMc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_total_Slot2-36_1_8055_diatracer.515583.515583.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nQPSFQGSTFDITc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_total_Slot2-36_1_8055_diatracer.517284.517284.2 [INFO:] Please specify modification and rerun PTMProphet ... ​ [INFO:] processed 95000/195503 spectrum_queries [ERROR:] Cannot initialize for sequence: nAETAAAAPSAAATAPAAGGIPPQSc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_total_Slot2-36_1_8055_diatracer.518065.518065.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nELDQKHGEPVATAVPGYSLTc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_total_Slot2-36_1_8055_diatracer.518485.518485.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nQLAAEAPSSFMSEc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_total_Slot2-36_1_8055_diatracer.519563.519563.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nAPQTSSQRTAAKEPPGSEPSAFAFLNAc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_total_Slot2-36_1_8055_diatracer.521482.521482.4 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nIDSVAGINYGLVAPPATTAETLDVQMKc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_total_Slot2-36_1_8055_diatracer.522489.522489.4 [INFO:] Please specify modification and rerun PTMProphet ... ​ [INFO:] processed 96000/195503 spectrum_queries [ERROR:] Cannot initialize for sequence: nPEQINIDLPLEGc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_total_Slot2-36_1_8055_diatracer.524683.524683.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nIFLEGANGAPAHTVc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_total_Slot2-36_1_8055_diatracer.525480.525480.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nIKEGNLTC[160]GPGEVc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_total_Slot2-36_1_8055_diatracer.526603.526603.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nLETFLSLLVQNLAPAETHTc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_total_Slot2-36_1_8055_diatracer.527105.527105.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nAESVATSASHSTTHc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_total_Slot2-36_1_8055_diatracer.527147.527147.2 [INFO:] Please specify modification and rerun PTMProphet ... ​ [INFO:] processed 97000/195503 spectrum_queries [ERROR:] Cannot initialize for sequence: nGPAEAGC[160]LPGAQAGSc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_total_Slot2-36_1_8055_diatracer.529189.529189.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nD[158]LSHWETRTYEFTLQSc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_total_Slot2-36_1_8055_diatracer.529499.529499.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nEAMLEPLYKEEc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_total_Slot2-36_1_8055_diatracer.530137.530137.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nSARLAAGQGAGAGQGGGAGGGLGGSGAc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_total_Slot2-36_1_8055_diatracer.530668.530668.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nVGSHPEGGASWLSTAANFLSRSFYWc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_total_Slot2-36_1_8055_diatracer.530742.530742.4 [INFO:] Please specify modification and rerun PTMProphet ... ​ [INFO:] processed 98000/195503 spectrum_queries [ERROR:] Cannot initialize for sequence: n[43]GGLSTVGAC[160]PGILGAQQGEDLVPEPADEc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_total_Slot2-36_1_8055_diatracer.533352.533352.4 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nGYLAAVPYALPATc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_total_Slot2-36_1_8055_diatracer.537089.537089.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nVGSHPEGGASWLSTAANFLSRSFYWc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_total_Slot2-36_1_8055_diatracer.537535.537535.4 [INFO:] Please specify modification and rerun PTMProphet ... ​ [INFO:] processed 99000/195503 spectrum_queries [ERROR:] Cannot initialize for sequence: nQELSSLQPALQITSGNQHFc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_total_Slot2-36_1_8055_diatracer.538455.538455.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nREKAQGDQSQSYc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_total_Slot2-36_1_8055_diatracer.538966.538966.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nEGGLSPGHGAPGLPLWRESDGGSAQVLHc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_total_Slot2-36_1_8055_diatracer.541071.541071.4 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nEPLEPIDRGTYSSFIDLAc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_total_Slot2-36_1_8055_diatracer.541910.541910.3 [INFO:] Please specify modification and rerun PTMProphet ... ​ [INFO:] processed 100000/195503 spectrum_queries [ERROR:] Cannot initialize for sequence: nDHSAAAAATASAAPDLGPDLMDc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_total_Slot2-36_1_8055_diatracer.543272.543272.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nVAELEAQAASEVTc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_total_Slot2-36_1_8055_diatracer.544101.544101.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nQEVATFSQRAVSDTLMTINc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_total_Slot2-36_1_8055_diatracer.545604.545604.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nLGPGPGLGAASGLGAGGEGGGDGAAAAc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_total_Slot2-36_1_8055_diatracer.546386.546386.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nSLGLSSQTPM[147]LTSc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_total_Slot2-36_1_8055_diatracer.547570.547570.2 [INFO:] Please specify modification and rerun PTMProphet ... ​ [INFO:] processed 101000/195503 spectrum_queries [ERROR:] Cannot initialize for sequence: nYVC[160]TTPPLGLAQGTGNDWEc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_total_Slot2-36_1_8055_diatracer.549127.549127.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nLSSMSEGLSDMPEc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_total_Slot2-36_1_8055_diatracer.549596.549596.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nEGRQAGPAGAVAAPAAc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_total_Slot2-36_1_8055_diatracer.550241.550241.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nSTLQSTQVQQQESQRQVAc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_total_Slot2-36_1_8055_diatracer.551674.551674.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nPEVEVRGMISAFc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_total_Slot2-36_1_8055_diatracer.551757.551757.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nSISNPPGSNLRTTc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_total_Slot2-36_1_8055_diatracer.552426.552426.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nDAVEMIMVSWKc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_total_Slot2-36_1_8055_diatracer.553018.553018.2 [INFO:] Please specify modification and rerun PTMProphet ... ​ [INFO:] processed 102000/195503 spectrum_queries [ERROR:] Cannot initialize for sequence: nALGSLVPQIAPVGC[160]c[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_total_Slot2-36_1_8055_diatracer.554357.554357.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nGEVVRVNLSSSKAc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_total_Slot2-36_1_8055_diatracer.555364.555364.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nC[160]LFLGELKDDINc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_total_Slot2-36_1_8055_diatracer.556413.556413.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nGPMNQC[160]LVATGTHc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_total_Slot2-36_1_8055_diatracer.556540.556540.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nRDPSPVSGEc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_total_Slot2-36_1_8055_diatracer.556573.556573.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nSEDLGLSSGc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_total_Slot2-36_1_8055_diatracer.557195.557195.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nELISMSAEGDGPQAc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_total_Slot2-36_1_8055_diatracer.559128.559128.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nISC[160]TGRLM[147]VQAVc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_total_Slot2-36_1_8055_diatracer.559157.559157.3 [INFO:] Please specify modification and rerun PTMProphet ... ​ [INFO:] processed 103000/195503 spectrum_queries [ERROR:] Cannot initialize for sequence: nKENEGFGFc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_total_Slot2-36_1_8055_diatracer.559294.559294.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nC[160]NTFQLVRAGAAGQEGRc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_total_Slot2-36_1_8055_diatracer.560845.560845.4 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nQAHVDVKFQLPIc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_total_Slot2-36_1_8055_diatracer.562676.562676.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nLGGIGHTPAGPYDGVc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_total_Slot2-36_1_8055_diatracer.562930.562930.3 [INFO:] Please specify modification and rerun PTMProphet ... ​ [INFO:] processed 104000/195503 spectrum_queries [ERROR:] Cannot initialize for sequence: nWGLDGATQGc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_total_Slot2-36_1_8055_diatracer.567468.567468.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nVDAAPLRNGKLTFc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_total_Slot2-36_1_8055_diatracer.568024.568024.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nVGEGPPGFLc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_total_Slot2-36_1_8055_diatracer.569843.569843.2 [INFO:] Please specify modification and rerun PTMProphet ... ​ [INFO:] processed 105000/195503 spectrum_queries [ERROR:] Cannot initialize for sequence: nPLYTLLVDc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_total_Slot2-36_1_8055_diatracer.572188.572188.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nC[160]LFLGELKDDINc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_total_Slot2-36_1_8055_diatracer.572322.572322.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nYVALLLSTKLWEc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_total_Slot2-36_1_8055_diatracer.572431.572431.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nASGVGLPGGWc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_total_Slot2-36_1_8055_diatracer.572718.572718.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nTSSARGSGSNPDTAGc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_total_Slot2-36_1_8055_diatracer.575216.575216.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nMMQQEIIQHAIEEITAc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_total_Slot2-36_1_8055_diatracer.576807.576807.4 [INFO:] Please specify modification and rerun PTMProphet ... ​ [INFO:] processed 106000/195503 spectrum_queries [ERROR:] Cannot initialize for sequence: nRLHPGGSSQc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_total_Slot2-36_1_8055_diatracer.577733.577733.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nEIEVEMC[160]LYC[160]Vc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_total_Slot2-36_1_8055_diatracer.577963.577963.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nM[147]EGAQAAAVc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_total_Slot2-36_1_8055_diatracer.578268.578268.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nQLFSPHSQc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_total_Slot2-36_1_8055_diatracer.579347.579347.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nAGGVLVASHLQSFLc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_total_Slot2-36_1_8055_diatracer.580378.580378.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nLGALALSPKc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_total_Slot2-36_1_8055_diatracer.581984.581984.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nVPNQVLHQKLLLc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_total_Slot2-36_1_8055_diatracer.583080.583080.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nNC[160]GTWLMVLERc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_total_Slot2-36_1_8055_diatracer.583506.583506.3 [INFO:] Please specify modification and rerun PTMProphet ... ​ [INFO:] processed 107000/195503 spectrum_queries [ERROR:] Cannot initialize for sequence: nPPQTQSSGLc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_total_Slot2-36_1_8055_diatracer.583760.583760.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nGSASVAQKGAc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_total_Slot2-36_1_8055_diatracer.583846.583846.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nPPQTQSSGLc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_total_Slot2-36_1_8055_diatracer.585540.585540.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nLTMLQETLNLPPc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_total_Slot2-36_1_8055_diatracer.586004.586004.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nQLFTVTLIVTRIKMAKc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_total_Slot2-36_1_8055_diatracer.586308.586308.4 [INFO:] Please specify modification and rerun PTMProphet ... ​ [INFO:] processed 108000/195503 spectrum_queries [ERROR:] Cannot initialize for sequence: nEKTEMEGVc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_total_Slot2-36_1_8055_diatracer.590887.590887.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nC[160]LFLGELKDDINc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_total_Slot2-36_1_8055_diatracer.591765.591765.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nSC[160]SAGHSITSRFSc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_total_Slot2-36_1_8055_diatracer.591950.591950.3 [INFO:] Please specify modification and rerun PTMProphet ... ​ [INFO:] processed 109000/195503 spectrum_queries [ERROR:] Cannot initialize for sequence: nESVGLGSARGTTTTHLVQPDVDGLESSPGc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_total_Slot2-36_1_8055_diatracer.599660.599660.3 [INFO:] Please specify modification and rerun PTMProphet ... ​ [INFO:] processed 110000/195503 spectrum_queries [ERROR:] Cannot initialize for sequence: nPMQLMGFTLSGLVDTGQPc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_total_Slot2-36_1_8055_diatracer.602608.602608.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nASSAQAGAAAEAPGSPAGLPAPc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_total_Slot2-36_1_8055_diatracer.602620.602620.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nIVQTDYFQNQRTINDc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_total_Slot2-36_1_8055_diatracer.602701.602701.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nALSEDSAPTNDTAANSASPPAETELQAMc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_total_Slot2-36_1_8055_diatracer.604311.604311.3 [INFO:] Please specify modification and rerun PTMProphet ... ​ [INFO:] processed 111000/195503 spectrum_queries [ERROR:] Cannot initialize for sequence: nSRHKWNWPQGSWGLGGc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_total_Slot2-36_1_8055_diatracer.608864.608864.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nASSAQAGAAAEAPGSPAGLPAPc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_total_Slot2-36_1_8055_diatracer.610800.610800.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nSRHKWNWPQGSWGLGGc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_total_Slot2-36_1_8055_diatracer.610914.610914.2 [INFO:] Please specify modification and rerun PTMProphet ... ​ [INFO:] processed 113000/195503 spectrum_queries [ERROR:] Cannot initialize for sequence: nENALM[147]PNWYELGQMSAc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_total_Slot2-36_1_8055_diatracer.620547.620547.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nEQEELALFVAARc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_total_Slot2-36_1_8055_diatracer.623089.623089.2 [INFO:] Please specify modification and rerun PTMProphet ... ​ [INFO:] processed 114000/195503 spectrum_queries [ERROR:] Cannot initialize for sequence: nVLSPTSVFKSC[160]AFc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_total_Slot2-36_1_8055_diatracer.626169.626169.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nSTPDESPEPVAAAGDc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_total_Slot2-36_1_8055_diatracer.628226.628226.2 [INFO:] Please specify modification and rerun PTMProphet ... ​ [INFO:] processed 116000/195503 spectrum_queries [ERROR:] Cannot initialize for sequence: nVAPSTFSFLSAMSTc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_total_Slot2-36_1_8055_diatracer.636930.636930.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nDLLC[160]GGASPASYNLc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_total_Slot2-36_1_8055_diatracer.638992.638992.2 [INFO:] Please specify modification and rerun PTMProphet ... ​ [INFO:] processed 117000/195503 spectrum_queries [ERROR:] Cannot initialize for sequence: nENLLPFVGLNNLGc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_total_Slot2-36_1_8055_diatracer.643335.643335.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nLQSAQSSQTSWSTc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_total_Slot2-36_1_8055_diatracer.643925.643925.2 [INFO:] Please specify modification and rerun PTMProphet ... ​ [INFO:] processed 118000/195503 spectrum_queries [ERROR:] Cannot initialize for sequence: nFDTQQSDMSGANGc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_total_Slot2-36_1_8055_diatracer.647874.647874.2 [INFO:] Please specify modification and rerun PTMProphet ... ​ [INFO:] processed 119000/195503 spectrum_queries [ERROR:] Cannot initialize for sequence: nEYNILYGNVSQTPLLDQKc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_total_Slot2-36_1_8055_diatracer.654632.654632.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nAPAADAAPAGPSSC[160]LGc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_total_Slot2-36_1_8055_diatracer.654710.654710.2 [INFO:] Please specify modification and rerun PTMProphet ... ​ [INFO:] processed 120000/195503 spectrum_queries [ERROR:] Cannot initialize for sequence: nISDSAVTMDGQAVEVVTLEQc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_total_Slot2-36_1_8055_diatracer.656910.656910.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nLFSAGRDLVAEDEc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_total_Slot2-36_1_8055_diatracer.661505.661505.2 [INFO:] Please specify modification and rerun PTMProphet ... ​ [INFO:] processed 121000/195503 spectrum_queries [ERROR:] Cannot initialize for sequence: nWFHSSC[160]YQPFC[160]RSGFYc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_total_Slot2-36_1_8055_diatracer.661969.661969.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nSLVRYSAAAAAAEGDRLEAEQc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_total_Slot2-36_1_8055_diatracer.662413.662413.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nPALPDPALPLQMLc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_total_Slot2-36_1_8055_diatracer.663675.663675.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nLSYGTVC[160]MLWAHTEVC[160]VMc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_total_Slot2-36_1_8055_diatracer.663917.663917.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nVEVVSPATPVPSETAPASVFPc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_total_Slot2-36_1_8055_diatracer.665139.665139.3 [INFO:] Please specify modification and rerun PTMProphet ... ​ [INFO:] processed 122000/195503 spectrum_queries [ERROR:] Cannot initialize for sequence: nIQNDLHRQQYSc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_total_Slot2-36_1_8055_diatracer.667140.667140.2 [INFO:] Please specify modification and rerun PTMProphet ... ​ [INFO:] processed 123000/195503 spectrum_queries [ERROR:] Cannot initialize for sequence: nEQGGVILLRc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_total_Slot2-36_1_8055_diatracer.674825.674825.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nNIVTVFPFSKAGRc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_total_Slot2-36_1_8055_diatracer.676697.676697.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nGAVTGAKDAVTTTVTGc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_total_Slot2-36_1_8055_diatracer.676761.676761.3 [INFO:] Please specify modification and rerun PTMProphet ... ​ [INFO:] processed 124000/195503 spectrum_queries [ERROR:] Cannot initialize for sequence: nLLGEAAAAPLc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_total_Slot2-36_1_8055_diatracer.678358.678358.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nKC[160]IC[160]SQASHRGHc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_total_Slot2-36_1_8055_diatracer.678665.678665.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nRDVAVAEEVc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_total_Slot2-36_1_8055_diatracer.679148.679148.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nIVTGPHVC[160]Lc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_total_Slot2-36_1_8055_diatracer.679563.679563.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nLSDGSKESSc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_total_Slot2-36_1_8055_diatracer.679950.679950.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nYFPDSLLQVLSVVc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_total_Slot2-36_1_8055_diatracer.680546.680546.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nNALKNM[147]MGLNSDKc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_total_Slot2-36_1_8055_diatracer.683087.683087.3 [INFO:] Please specify modification and rerun PTMProphet ... ​ [INFO:] processed 125000/195503 spectrum_queries [ERROR:] Cannot initialize for sequence: nGITYFAYLIQGSHc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_total_Slot2-36_1_8055_diatracer.684699.684699.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nKLELDVPAAc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_total_Slot2-36_1_8055_diatracer.686344.686344.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nGHC[160]DLLTATPFGFc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_total_Slot2-36_1_8055_diatracer.687049.687049.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nHILDGTAEEc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_total_Slot2-36_1_8055_diatracer.687335.687335.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nILGGLNGGEEc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_total_Slot2-36_1_8055_diatracer.688439.688439.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nAEGLM[147]LEKEVGALLLLVMc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_total_Slot2-36_1_8055_diatracer.688472.688472.4 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nTHPLLPTRc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_total_Slot2-36_1_8055_diatracer.689097.689097.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nM[147]GSRTMTSSc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_total_Slot2-36_1_8055_diatracer.689101.689101.2 [INFO:] Please specify modification and rerun PTMProphet ... ​ [INFO:] processed 126000/195503 spectrum_queries [ERROR:] Cannot initialize for sequence: nPEGGGAPGAAQAc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_total_Slot2-36_1_8055_diatracer.689639.689639.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nVGSVLE[172]EVAAAAEGGVc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_total_Slot2-36_1_8055_diatracer.691592.691592.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nSHAEIAEQAc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_total_Slot2-36_1_8055_diatracer.692685.692685.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nMAQGFAVGFDPLGLc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_total_Slot2-36_1_8055_diatracer.692950.692950.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nQKIYC[160]HILDPTKc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_total_Slot2-36_1_8055_diatracer.694407.694407.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nHQAPEPAGGPc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_total_Slot2-36_1_8055_diatracer.694876.694876.2 [INFO:] Please specify modification and rerun PTMProphet ... ​ [INFO:] processed 127000/195503 spectrum_queries [ERROR:] Cannot initialize for sequence: nNGTSPLHILAAAIGQGc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_total_Slot2-36_1_8055_diatracer.696609.696609.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nPAEAQELSNc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_total_Slot2-36_1_8055_diatracer.696729.696729.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nENLPQMQNVSEEc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_total_Slot2-36_1_8055_diatracer.697156.697156.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nSLGKVGEGGALGPGKGQc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_total_Slot2-36_1_8055_diatracer.698480.698480.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nIKPTGLLTIPSPQIc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_total_Slot2-36_1_8055_diatracer.699669.699669.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nPEGGGAPGAAQAc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_total_Slot2-36_1_8055_diatracer.700255.700255.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nVALSSPAAAPAc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_total_Slot2-36_1_8055_diatracer.701057.701057.2 [INFO:] Please specify modification and rerun PTMProphet ... ​ [INFO:] processed 128000/195503 spectrum_queries [ERROR:] Cannot initialize for sequence: nGAVTGAKDAVTTTVTGc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_total_Slot2-36_1_8055_diatracer.702334.702334.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nTFLAQHASLc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_total_Slot2-36_1_8055_diatracer.702474.702474.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nKLELDVPAAc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_total_Slot2-36_1_8055_diatracer.703312.703312.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nYFLPADADPDTYSc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_total_Slot2-36_1_8055_diatracer.703899.703899.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nFMELNAAKLREEc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_total_Slot2-36_1_8055_diatracer.704495.704495.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nAPIAGFSSFVc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_total_Slot2-36_1_8055_diatracer.704682.704682.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nENAIKYWTLWHc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_total_Slot2-36_1_8055_diatracer.704859.704859.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nSHAEIAEQAc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_total_Slot2-36_1_8055_diatracer.705390.705390.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nSVEVHGAVGASGC[160]PAAc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_total_Slot2-36_1_8055_diatracer.705930.705930.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nMLEMGAIKNLTSFc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_total_Slot2-36_1_8055_diatracer.706677.706677.3 [INFO:] Please specify modification and rerun PTMProphet ... ​ [INFO:] processed 129000/195503 spectrum_queries [ERROR:] Cannot initialize for sequence: nHILDGTAEEc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_total_Slot2-36_1_8055_diatracer.708562.708562.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nWLQHLEENEAGQEQRTc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_total_Slot2-36_1_8055_diatracer.708818.708818.4 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nQAAAQLLLPGc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_total_Slot2-36_1_8055_diatracer.710940.710940.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nSQAIGAGLEDc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_total_Slot2-36_1_8055_diatracer.711960.711960.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nAGAGPGRSSSSc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_total_Slot2-36_1_8055_diatracer.712480.712480.2 [INFO:] Please specify modification and rerun PTMProphet ... ​ [INFO:] processed 130000/195503 spectrum_queries [ERROR:] Cannot initialize for sequence: nGITYFAYLIQGSHc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_total_Slot2-36_1_8055_diatracer.714101.714101.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nPGSLTYLTLHYLSc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_total_Slot2-36_1_8055_diatracer.714164.714164.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nGSSHPPTSASc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_total_Slot2-36_1_8055_diatracer.714257.714257.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nNSPATLFEVPDTWc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_total_Slot2-36_1_8055_diatracer.716401.716401.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nKLELDVPAAc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_total_Slot2-36_1_8055_diatracer.718167.718167.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nQASPPSNNASc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_total_Slot2-36_1_8055_diatracer.718658.718658.2 [INFO:] Please specify modification and rerun PTMProphet ... ​ [INFO:] processed 131000/195503 spectrum_queries [ERROR:] Cannot initialize for sequence: nSQLQLHLQAAQC[160]FANGAASWNKAMKFc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_total_Slot2-36_1_8055_diatracer.722850.722850.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nSQLQLHLQAAQC[160]FANGAASWNKAMKFc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_total_Slot2-36_1_8055_diatracer.723699.723699.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nWVLQDSQDENTKYIEc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_total_Slot2-36_1_8055_diatracer.724938.724938.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nSQLQLHLQAAQC[160]FANGAASWNKAMKFc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_total_Slot2-36_1_8055_diatracer.725396.725396.3 [INFO:] Please specify modification and rerun PTMProphet ... ​ [INFO:] processed 132000/195503 spectrum_queries [ERROR:] Cannot initialize for sequence: nSQLQLHLQAAQC[160]FANGAASWNKAMKFc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_total_Slot2-36_1_8055_diatracer.726243.726243.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: n[43]MSVDLPGEYDSSFHPSTc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_total_Slot2-36_1_8055_diatracer.727559.727559.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nQVIEMFNASC[160]LPYVPEc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_total_Slot2-36_1_8055_diatracer.728915.728915.2 [INFO:] Please specify modification and rerun PTMProphet ... ​ [INFO:] processed 134000/195503 spectrum_queries [ERROR:] Cannot initialize for sequence: nMAGLKVLQLINDNTATALc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_total_Slot2-36_1_8055_diatracer.738992.738992.2 [INFO:] Please specify modification and rerun PTMProphet ... ​ [INFO:] processed 135000/195503 spectrum_queries [ERROR:] Cannot initialize for sequence: nHYLDNHGPAARTSc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_total_Slot2-36_1_8055_diatracer.745063.745063.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nIGTLDALC[160]FLNC[160]HC[160]DELSAGNPVFSASc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_total_Slot2-36_1_8055_diatracer.748239.748239.4 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nSLQVLLLLLLLAAALC[160]PWLEc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_total_Slot2-36_1_8055_diatracer.749118.749118.3 [INFO:] Please specify modification and rerun PTMProphet ... ​ [INFO:] processed 136000/195503 spectrum_queries [ERROR:] Cannot initialize for sequence: nVLQQVSQGGGAIWLc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_total_Slot2-36_1_8055_diatracer.749562.749562.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nVEAALAAELLC[160]FASLLLLSRc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_total_Slot2-36_1_8055_diatracer.749795.749795.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nDQAQPSPVTQPGASAc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_total_Slot2-36_1_8055_diatracer.751636.751636.2 [INFO:] Please specify modification and rerun PTMProphet ... ​ [INFO:] processed 137000/195503 spectrum_queries [ERROR:] Cannot initialize for sequence: nLLQSLLLWIAPLYSRFLSAc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_total_Slot2-36_1_8055_diatracer.755018.755018.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nAPAADAAPAGPSSC[160]LGc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_total_Slot2-36_1_8055_diatracer.755768.755768.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nDIVIALFFSRIYLLTFLLLc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_total_Slot2-36_1_8055_diatracer.759425.759425.3 [INFO:] Please specify modification and rerun PTMProphet ... ​ [INFO:] processed 138000/195503 spectrum_queries [ERROR:] Cannot initialize for sequence: nGWC[160]EDMLNYRIc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_total_Slot2-36_1_8055_diatracer.763426.763426.2 [INFO:] Please specify modification and rerun PTMProphet ... ​ [INFO:] processed 139000/195503 spectrum_queries [ERROR:] Cannot initialize for sequence: nLTFSPFQVLSLLLVLQPPPHc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_total_Slot2-36_1_8055_diatracer.766737.766737.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nLEKLAGVC[160]GLLAIGc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_total_Slot2-36_1_8055_diatracer.767750.767750.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nVLMSVQYFLEDVc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_total_Slot2-36_1_8055_diatracer.768581.768581.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nDQAQPSPVTQPGASAc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_total_Slot2-36_1_8055_diatracer.769329.769329.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nGQGQWAPTC[160]TLPGPc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_total_Slot2-36_1_8055_diatracer.769963.769963.2 [INFO:] Please specify modification and rerun PTMProphet ... ​ [INFO:] processed 140000/195503 spectrum_queries [ERROR:] Cannot initialize for sequence: nLQGTPSNKEQQGSLc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_total_Slot2-36_1_8055_diatracer.772996.772996.2 [INFO:] Please specify modification and rerun PTMProphet ... ​ [INFO:] processed 141000/195503 spectrum_queries [ERROR:] Cannot initialize for sequence: nQLSQPSFQIC[160]HNc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_total_Slot2-36_1_8055_diatracer.775472.775472.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nAIQDGTIVLMGTYDc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_total_Slot2-36_1_8055_diatracer.776961.776961.2 [INFO:] Please specify modification and rerun PTMProphet ... ​ [INFO:] processed 142000/195503 spectrum_queries [ERROR:] Cannot initialize for sequence: nYKEELIEKM[147]QEc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_total_Slot2-36_1_8055_diatracer.781290.781290.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nLQGIDSHMLLQQPLIYC[160]Hc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_total_Slot2-36_1_8055_diatracer.781586.781586.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nQPVLEFSLENLRc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_total_Slot2-36_1_8055_diatracer.782726.782726.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nTLNINGQIPTGEGVc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_total_Slot2-36_1_8055_diatracer.783598.783598.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nVAEKPYQSSTMLSQNSENEDc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_total_Slot2-36_1_8055_diatracer.784592.784592.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nSDFKHQPLVEALDSEGTAGPKc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_total_Slot2-36_1_8055_diatracer.784912.784912.3 [INFO:] Please specify modification and rerun PTMProphet ... ​ [INFO:] processed 143000/195503 spectrum_queries [ERROR:] Cannot initialize for sequence: nRSAAEMYGSSFD[202]LD[202]YDFQRDYYDc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_total_Slot2-36_1_8055_diatracer.786059.786059.4 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nDHLSPLSSSMPFWc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_total_Slot2-36_1_8055_diatracer.787714.787714.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nGYHYIIANLVGIYc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_total_Slot2-36_1_8055_diatracer.789955.789955.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nEVETLYQC[160]c[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_total_Slot2-36_1_8055_diatracer.791251.791251.2 [INFO:] Please specify modification and rerun PTMProphet ... ​ [INFO:] processed 144000/195503 spectrum_queries [ERROR:] Cannot initialize for sequence: nAFTC[160]LPVENPEAPVc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_total_Slot2-36_1_8055_diatracer.791313.791313.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nPETVAMVSAMPILMc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_total_Slot2-36_1_8055_diatracer.791981.791981.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nNELLGTASVNLSNVLc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_total_Slot2-36_1_8055_diatracer.792629.792629.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nGSQGAIPPPAKRPC[160]Mc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_total_Slot2-36_1_8055_diatracer.792955.792955.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nTGAFAYPFLFDNLPc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_total_Slot2-36_1_8055_diatracer.793177.793177.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nAPASGPERIVc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_total_Slot2-36_1_8055_diatracer.795807.795807.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nLEVHSNGSVAYFNASc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_total_Slot2-36_1_8055_diatracer.796202.796202.3 [INFO:] Please specify modification and rerun PTMProphet ... ​ [INFO:] processed 145000/195503 spectrum_queries [ERROR:] Cannot initialize for sequence: nAPTSC[160]PAGRC[160]C[160]TPAc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_total_Slot2-36_1_8055_diatracer.797131.797131.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: n[43]MQPPVPGPLGLLDPAc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_total_Slot2-36_1_8055_diatracer.797298.797298.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nSVAQAWSAVAc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_total_Slot2-36_1_8055_diatracer.797818.797818.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nAGDSEAPLC[160]Sc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_total_Slot2-36_1_8055_diatracer.798640.798640.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nVSWLSLNAEc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_total_Slot2-36_1_8055_diatracer.799496.799496.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nEVLRVC[160]SSGALSQLc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_total_Slot2-36_1_8055_diatracer.800162.800162.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nYDANILTASc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_total_Slot2-36_1_8055_diatracer.801758.801758.2 [INFO:] Please specify modification and rerun PTMProphet ... ​ [INFO:] processed 146000/195503 spectrum_queries [ERROR:] Cannot initialize for sequence: nSVNTITSFC[160]c[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_total_Slot2-36_1_8055_diatracer.802357.802357.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nPAGPGPGPPATPAQPQPc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_total_Slot2-36_1_8055_diatracer.803183.803183.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nSSVTSSLMYc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_total_Slot2-36_1_8055_diatracer.804226.804226.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nLDIGDPTVTFQFAVAQHAEAc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_total_Slot2-36_1_8055_diatracer.805591.805591.4 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nDHLSPLSSSMPFWc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_total_Slot2-36_1_8055_diatracer.806683.806683.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: n[43]SMGAIVVEEc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_total_Slot2-36_1_8055_diatracer.806737.806737.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nEVLRVC[160]SSGALSQLc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_total_Slot2-36_1_8055_diatracer.807269.807269.3 [INFO:] Please specify modification and rerun PTMProphet ... ​ [INFO:] processed 147000/195503 spectrum_queries [ERROR:] Cannot initialize for sequence: nEEVPRYEYAGSC[160]Ic[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_total_Slot2-36_1_8055_diatracer.809678.809678.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nRQASLSQSIc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_total_Slot2-36_1_8055_diatracer.812162.812162.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nKSEYVGATNSAFEADc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_total_Slot2-36_1_8055_diatracer.812857.812857.3 [INFO:] Please specify modification and rerun PTMProphet ... ​ [INFO:] processed 148000/195503 spectrum_queries [ERROR:] Cannot initialize for sequence: nDHLSPLSSSMPFWc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_total_Slot2-36_1_8055_diatracer.813814.813814.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nEVLRVC[160]SSGALSQLc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_total_Slot2-36_1_8055_diatracer.814399.814399.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nLQEVHGLVQc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_total_Slot2-36_1_8055_diatracer.816343.816343.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nHSVGGGGAAAPAGQPGGGPc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_total_Slot2-36_1_8055_diatracer.818541.818541.3 [INFO:] Please specify modification and rerun PTMProphet ... ​ [INFO:] processed 149000/195503 spectrum_queries [ERROR:] Cannot initialize for sequence: nQVDELLITSDTMTNc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_total_Slot2-36_1_8055_diatracer.819701.819701.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nC[160]LRPQGPPSSDGPLDc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_total_Slot2-36_1_8055_diatracer.820071.820071.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nLDFSGGAEAVGYAGSEc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_total_Slot2-36_1_8055_diatracer.820245.820245.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nLDFSGGAEAVGYAGSEc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_total_Slot2-36_1_8055_diatracer.822622.822622.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nAVALGAALALLLSRPAGc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_total_Slot2-36_1_8055_diatracer.823621.823621.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nYGSLGLYVAEQFGDc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_total_Slot2-36_1_8055_diatracer.823819.823819.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nLFWHEDSKPGTLVc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_total_Slot2-36_1_8055_diatracer.824092.824092.3 [INFO:] Please specify modification and rerun PTMProphet ... ​ [INFO:] processed 150000/195503 spectrum_queries [ERROR:] Cannot initialize for sequence: nFSC[160]LSLPSSc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_total_Slot2-36_1_8055_diatracer.824509.824509.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nILPSYRDTITPQQc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_total_Slot2-36_1_8055_diatracer.825234.825234.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nQIDELSVGSDTIDLc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_total_Slot2-36_1_8055_diatracer.825711.825711.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nTGAFAYPFLFDNLPc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_total_Slot2-36_1_8055_diatracer.826382.826382.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nFDAGVRSFSc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_total_Slot2-36_1_8055_diatracer.828611.828611.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nALGSPWGRDc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_total_Slot2-36_1_8055_diatracer.829783.829783.2 [INFO:] Please specify modification and rerun PTMProphet ... ​ [INFO:] processed 151000/195503 spectrum_queries [ERROR:] Cannot initialize for sequence: nLEQGEEPWVGDGEIPSSDSc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_total_Slot2-36_1_8055_diatracer.830606.830606.4 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nMELILSTSPc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_total_Slot2-36_1_8055_diatracer.831180.831180.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nVDSYQPLNNc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_total_Slot2-36_1_8055_diatracer.834279.834279.2 [INFO:] Please specify modification and rerun PTMProphet ... ​ [INFO:] processed 152000/195503 spectrum_queries [ERROR:] Cannot initialize for sequence: nYIEQATVHSSMIFc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_total_Slot2-36_1_8055_diatracer.835966.835966.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nERPAESTVEc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_total_Slot2-36_1_8055_diatracer.837519.837519.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nKTTSVC[160]AVLc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_total_Slot2-36_1_8055_diatracer.839882.839882.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nAAGASRQAQDc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_total_Slot2-36_1_8055_diatracer.839910.839910.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nPAGPGPGPPATPAQPQPc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_total_Slot2-36_1_8055_diatracer.841180.841180.3 [INFO:] Please specify modification and rerun PTMProphet ... ​ [INFO:] processed 153000/195503 spectrum_queries [ERROR:] Cannot initialize for sequence: nYEDLC[160]AFYHPGVNGPPLc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_total_Slot2-36_1_8055_diatracer.845053.845053.2 [INFO:] Please specify modification and rerun PTMProphet ... ​ [INFO:] processed 154000/195503 spectrum_queries [ERROR:] Cannot initialize for sequence: nFDIYTIAFGIRNVTHIDc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_total_Slot2-36_1_8055_diatracer.850542.850542.2 [INFO:] Please specify modification and rerun PTMProphet ... ​ [INFO:] processed 155000/195503 spectrum_queries [ERROR:] Cannot initialize for sequence: nGPAAVSVAAAAAGAAAGAAVAAAAGAc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_total_Slot2-36_1_8055_diatracer.856456.856456.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nPPPPGILSDISFATGPGGGGGGGNGGPASGGGARQc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_total_Slot2-36_1_8055_diatracer.856685.856685.3 [INFO:] Please specify modification and rerun PTMProphet ... ​ [INFO:] processed 156000/195503 spectrum_queries [ERROR:] Cannot initialize for sequence: nLQAENTALQKNVAGAc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_total_Slot2-36_1_8055_diatracer.865447.865447.2 [INFO:] Please specify modification and rerun PTMProphet ... ​ [INFO:] processed 157000/195503 spectrum_queries [ERROR:] Cannot initialize for sequence: nTDAASLAPAAPPAAPPQQTEAESSc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_total_Slot2-36_1_8055_diatracer.868243.868243.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nVAGLSIGPNPC[160]HGAPYLFLLC[160]FLVMLPGc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_total_Slot2-36_1_8055_diatracer.868396.868396.4 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nSRYM[147]ELYTYPPAc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_total_Slot2-36_1_8055_diatracer.868400.868400.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nGDGDLDLNGQLLVAQc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_total_Slot2-36_1_8055_diatracer.868989.868989.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nEMLVEINGILAEAMc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_total_Slot2-36_1_8055_diatracer.869547.869547.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nSRYM[147]ELYTYPPAc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_total_Slot2-36_1_8055_diatracer.870191.870191.2 [INFO:] Please specify modification and rerun PTMProphet ... ​ [INFO:] processed 158000/195503 spectrum_queries [ERROR:] Cannot initialize for sequence: nMTC[160]TVFMVGMQWc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_total_Slot2-36_1_8055_diatracer.873158.873158.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nVAAGVAGAAGGGGSIGASKc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_total_Slot2-36_1_8055_diatracer.873897.873897.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: n[43]GPEAGLLHSSDDAGGGPSDSQLPPc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_total_Slot2-36_1_8055_diatracer.874640.874640.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nENIELINTEAKESSWPGASVVc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_total_Slot2-36_1_8055_diatracer.875865.875865.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nNWVSPC[160]WPGLSGLc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_total_Slot2-36_1_8055_diatracer.876325.876325.2 [INFO:] Please specify modification and rerun PTMProphet ... ​ [INFO:] processed 159000/195503 spectrum_queries [ERROR:] Cannot initialize for sequence: nGGSYSQAASSDSAQGSD[158]VSLTAC[160]c[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_total_Slot2-36_1_8055_diatracer.877951.877951.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nSAEGLRGEMHAC[160]PGc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_total_Slot2-36_1_8055_diatracer.879853.879853.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nSSAAAAAALDLSGRRGc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_total_Slot2-36_1_8055_diatracer.880199.880199.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nPAVQSC[160]AWTLQLPGc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_total_Slot2-36_1_8055_diatracer.880481.880481.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nLYDYC[160]DVPQC[160]EASWWHLc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_total_Slot2-36_1_8055_diatracer.881802.881802.3 [INFO:] Please specify modification and rerun PTMProphet ... ​ [INFO:] processed 160000/195503 spectrum_queries [ERROR:] Cannot initialize for sequence: nGADC[160]VLTSGESQAWc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_total_Slot2-36_1_8055_diatracer.882421.882421.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nIQEESSSSISSEMKc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_total_Slot2-36_1_8055_diatracer.882905.882905.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nPAAAQWSELAAAAAAAc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_total_Slot2-36_1_8055_diatracer.883910.883910.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nLSSGGGGGGGGSSGGGGGGGNAc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_total_Slot2-36_1_8055_diatracer.883952.883952.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nMTC[160]TVFMVGMQWc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_total_Slot2-36_1_8055_diatracer.884555.884555.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nLQPAHLPC[160]AAWDGMASPSSHGQc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_total_Slot2-36_1_8055_diatracer.884628.884628.3 [INFO:] Please specify modification and rerun PTMProphet ... ​ [INFO:] processed 161000/195503 spectrum_queries [ERROR:] Cannot initialize for sequence: nAC[160]LAKGLAAAPSPNEc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_total_Slot2-36_1_8055_diatracer.887498.887498.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nLSSGGGGGGGGSSGGGGGGGNAc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_total_Slot2-36_1_8055_diatracer.887757.887757.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nITPFTKGKC[160]PPTVDYNSDPTPc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_total_Slot2-36_1_8055_diatracer.888698.888698.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nEVGAGPAESPVRAGRGc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_total_Slot2-36_1_8055_diatracer.889484.889484.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nSLAVVVRDDLPSPPc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_total_Slot2-36_1_8055_diatracer.889622.889622.2 [INFO:] Please specify modification and rerun PTMProphet ... ​ [INFO:] processed 162000/195503 spectrum_queries [ERROR:] Cannot initialize for sequence: nSRYM[147]ELYTYPPAc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_total_Slot2-36_1_8055_diatracer.895019.895019.2 [INFO:] Please specify modification and rerun PTMProphet ... ​ [INFO:] processed 163000/195503 spectrum_queries [ERROR:] Cannot initialize for sequence: nGGSYSQAASSDSAQGSD[158]VSLTAC[160]c[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_total_Slot2-36_1_8055_diatracer.898878.898878.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nIENDRLATNSSDVVc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_total_Slot2-36_1_8055_diatracer.901853.901853.2 [INFO:] Please specify modification and rerun PTMProphet ... ​ [INFO:] processed 164000/195503 spectrum_queries [ERROR:] Cannot initialize for sequence: nLTSHAELERc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_total_Slot2-36_1_8055_diatracer.904440.904440.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nNGPYTGPC[160]GLc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_total_Slot2-36_1_8055_diatracer.905488.905488.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: n[43]MGLGAALAGEKGTLWEc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_total_Slot2-36_1_8055_diatracer.906078.906078.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nIC[160]DGVQFGAGIRFLc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_total_Slot2-36_1_8055_diatracer.906916.906916.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nMYKTDRLGAEDQGGVc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_total_Slot2-36_1_8055_diatracer.907920.907920.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nAFTPSSNSTSQAGDM[147]ETLTFSc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_total_Slot2-36_1_8055_diatracer.908145.908145.4 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nAPTPGTASREPc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_total_Slot2-36_1_8055_diatracer.908356.908356.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nILEGDSPNGWISQDQc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_total_Slot2-36_1_8055_diatracer.908622.908622.3 [INFO:] Please specify modification and rerun PTMProphet ... ​ [INFO:] processed 165000/195503 spectrum_queries [ERROR:] Cannot initialize for sequence: nEVNISVFQVc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_total_Slot2-36_1_8055_diatracer.910502.910502.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nPVDVATLWSLSQLDGc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_total_Slot2-36_1_8055_diatracer.910755.910755.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nNNIPEPVVIGc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_total_Slot2-36_1_8055_diatracer.911797.911797.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nVTMTSLPQHGc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_total_Slot2-36_1_8055_diatracer.912746.912746.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nLDELEEATKc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_total_Slot2-36_1_8055_diatracer.913765.913765.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nFQGGREVESc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_total_Slot2-36_1_8055_diatracer.914263.914263.2 [INFO:] Please specify modification and rerun PTMProphet ... ​ [INFO:] processed 166000/195503 spectrum_queries [ERROR:] Cannot initialize for sequence: nELNGSDDALGVc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_total_Slot2-36_1_8055_diatracer.916181.916181.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nTINSTQLLRAWQEPc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_total_Slot2-36_1_8055_diatracer.918512.918512.3 [INFO:] Please specify modification and rerun PTMProphet ... ​ [INFO:] processed 167000/195503 spectrum_queries [ERROR:] Cannot initialize for sequence: nLLEAVGSSSGTPNAPPPc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_total_Slot2-36_1_8055_diatracer.922880.922880.3 [INFO:] Please specify modification and rerun PTMProphet ... ​ [INFO:] processed 168000/195503 spectrum_queries [ERROR:] Cannot initialize for sequence: nSESRSTEEGSc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_total_Slot2-36_1_8055_diatracer.927293.927293.2 [INFO:] Please specify modification and rerun PTMProphet ... ​ [INFO:] processed 169000/195503 spectrum_queries [ERROR:] Cannot initialize for sequence: nSLQLQLQAPSGNTVPAc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_total_Slot2-36_1_8055_diatracer.932594.932594.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nSKSAESGGRQGc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_total_Slot2-36_1_8055_diatracer.934591.934591.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nEAPEAQMQGEc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_total_Slot2-36_1_8055_diatracer.935866.935866.2 [INFO:] Please specify modification and rerun PTMProphet ... ​ [INFO:] processed 170000/195503 spectrum_queries [ERROR:] Cannot initialize for sequence: nNNIPEPVVIGc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_total_Slot2-36_1_8055_diatracer.936563.936563.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nYQAAAPSVSNc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_total_Slot2-36_1_8055_diatracer.936575.936575.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nMISLKVC[160]GFIQIWc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_total_Slot2-36_1_8055_diatracer.940244.940244.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nELNGSDDALGVc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_total_Slot2-36_1_8055_diatracer.940941.940941.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nSHLTATSVSQVSLLNVc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_total_Slot2-36_1_8055_diatracer.940998.940998.3 [INFO:] Please specify modification and rerun PTMProphet ... ​ [INFO:] processed 171000/195503 spectrum_queries [ERROR:] Cannot initialize for sequence: nGEAALAPSWPPSDGNAAc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_total_Slot2-36_1_8055_diatracer.941911.941911.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nANAQAAALYKc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_total_Slot2-36_1_8055_diatracer.942325.942325.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nTEPMAWNEVGKYC[160]c[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_total_Slot2-36_1_8055_diatracer.942404.942404.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nIELVVAPAGVTc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_total_Slot2-36_1_8055_diatracer.942485.942485.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nLFQFARGTFc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_total_Slot2-36_1_8055_diatracer.943044.943044.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nEPIPIDSIKc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_total_Slot2-36_1_8055_diatracer.944137.944137.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nNNIPEPVVIGc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_total_Slot2-36_1_8055_diatracer.946466.946466.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nFDPSPAYQSc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_total_Slot2-36_1_8055_diatracer.946590.946590.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nQLQSGPGEAKc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_total_Slot2-36_1_8055_diatracer.946918.946918.2 [INFO:] Please specify modification and rerun PTMProphet ... ​ [INFO:] processed 172000/195503 spectrum_queries [ERROR:] Cannot initialize for sequence: nGFLSSSSLHGHMQVHc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_total_Slot2-36_1_8055_diatracer.948669.948669.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nHGGSLEPAFPc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_total_Slot2-36_1_8055_diatracer.948858.948858.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nLAELYGASEGPAPLWc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_total_Slot2-36_1_8055_diatracer.949346.949346.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nNNSPGTAEGC[160]GGGGGGGGGGc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_total_Slot2-36_1_8055_diatracer.949861.949861.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nIELVVAPAGVTc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_total_Slot2-36_1_8055_diatracer.952380.952380.2 [INFO:] Please specify modification and rerun PTMProphet ... ​ [INFO:] processed 173000/195503 spectrum_queries [ERROR:] Cannot initialize for sequence: nSGIPTSEPGSQc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_total_Slot2-36_1_8055_diatracer.954446.954446.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nVTHLADEWGFDTVTc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_total_Slot2-36_1_8055_diatracer.954966.954966.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nRGNPALVSVASGGGGAPAAc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_total_Slot2-36_1_8055_diatracer.956822.956822.3 [INFO:] Please specify modification and rerun PTMProphet ... ​ [INFO:] processed 174000/195503 spectrum_queries [ERROR:] Cannot initialize for sequence: nGGGSEVITIYSc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_total_Slot2-36_1_8055_diatracer.960525.960525.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nFPDIMTC[160]HHRSC[160]Vc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_total_Slot2-36_1_8055_diatracer.960650.960650.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nGLPSSSPDASTAc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_total_Slot2-36_1_8055_diatracer.960739.960739.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nLPEASSLSNSNEGYLSLPSc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_total_Slot2-36_1_8055_diatracer.963767.963767.2 [INFO:] Please specify modification and rerun PTMProphet ... ​ [INFO:] processed 176000/195503 spectrum_queries [ERROR:] Cannot initialize for sequence: nSLASQFKAPAPSTVRSGWAc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_total_Slot2-36_1_8055_diatracer.971271.971271.2 [INFO:] Please specify modification and rerun PTMProphet ... ​ [INFO:] processed 177000/195503 spectrum_queries [ERROR:] Cannot initialize for sequence: nQGANEIKTEALDDDc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_total_Slot2-36_1_8055_diatracer.979184.979184.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nC[160]VNSGSLQLFLAGLHFIYRKc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_total_Slot2-36_1_8055_diatracer.980694.980694.3 [INFO:] Please specify modification and rerun PTMProphet ... ​ [INFO:] processed 178000/195503 spectrum_queries [ERROR:] Cannot initialize for sequence: nEMAAVGASASAAPVTESc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_total_Slot2-36_1_8055_diatracer.981932.981932.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: n[43]AVAAAAAAAGPAGAGGGRAQRSGLLEVc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_total_Slot2-36_1_8055_diatracer.982550.982550.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nAITIAGIPQSIIE[172]C[160]c[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_total_Slot2-36_1_8055_diatracer.983099.983099.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nLQEVTWARQPVAAAc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_total_Slot2-36_1_8055_diatracer.983220.983220.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nAKAYAANSHQGQMLAc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_total_Slot2-36_1_8055_diatracer.986003.986003.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nEGPASTPMSSAAPQAPAc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_total_Slot2-36_1_8055_diatracer.986215.986215.2 [INFO:] Please specify modification and rerun PTMProphet ... ​ [INFO:] processed 179000/195503 spectrum_queries [ERROR:] Cannot initialize for sequence: nGAILNISSGSGMLPVPLLTIYSATc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_total_Slot2-36_1_8055_diatracer.986388.986388.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nAAAAAAAAAAAAAAAASAGGKEAASGPNDSc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_total_Slot2-36_1_8055_diatracer.988235.988235.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nATAGEPSPHGQVSSPPc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_total_Slot2-36_1_8055_diatracer.989427.989427.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nLAATNALLNSLE[172]FTc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_total_Slot2-36_1_8055_diatracer.989843.989843.2 [INFO:] Please specify modification and rerun PTMProphet ... ​ [INFO:] processed 180000/195503 spectrum_queries [ERROR:] Cannot initialize for sequence: nPNGGRGGPNRGNMSNAc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_total_Slot2-36_1_8055_diatracer.992786.992786.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nGEPGAVGQMGSPGQQGASTQGLWEc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_total_Slot2-36_1_8055_diatracer.993142.993142.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nLEAM[147]LFAIDEINKc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_total_Slot2-36_1_8055_diatracer.993236.993236.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nVDLVPPGSSTELPGASc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_total_Slot2-36_1_8055_diatracer.993244.993244.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nEDLAALEKDYEEVGTDSFEEENEGEEFc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_total_Slot2-36_1_8055_diatracer.994590.994590.4 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nAITIAGIPQSIIE[172]C[160]c[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_total_Slot2-36_1_8055_diatracer.994988.994988.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nATAGEPSPHGQVSSPPc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_total_Slot2-36_1_8055_diatracer.996365.996365.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nEGIPPDQQRLIFAGKQLEDGRc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_total_Slot2-36_1_8055_diatracer.996543.996543.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nLQEVTWARQPVAAAc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_total_Slot2-36_1_8055_diatracer.997108.997108.2 [INFO:] Please specify modification and rerun PTMProphet ... ​ [INFO:] processed 181000/195503 spectrum_queries [ERROR:] Cannot initialize for sequence: nLGAAVAAAGWGRRATAAc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_total_Slot2-36_1_8055_diatracer.998524.998524.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nAITIAGIPQSIIE[172]C[160]c[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_total_Slot2-36_1_8055_diatracer.998719.998719.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nPKVSSTAHARHFTAc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_total_Slot2-36_1_8055_diatracer.999548.999548.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nAQLSPEASTEELIHc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_total_Slot2-36_1_8055_diatracer.1002013.1002013.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nTHLEWPLFVMTSHc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_total_Slot2-36_1_8055_diatracer.1002967.1002967.2 [INFO:] Please specify modification and rerun PTMProphet ... ​ [INFO:] processed 182000/195503 spectrum_queries [ERROR:] Cannot initialize for sequence: nIFVSGNSNEC[160]LQNSc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_total_Slot2-36_1_8055_diatracer.1005335.1005335.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nVLDQEFGC[160]LGSNLHLPC[160]TC[160]Fc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_total_Slot2-36_1_8055_diatracer.1006161.1006161.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nATAGEPSPHGQVSSPPc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_total_Slot2-36_1_8055_diatracer.1006793.1006793.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nVQYLVEWEGTTPYc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_total_Slot2-36_1_8055_diatracer.1007716.1007716.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nSESSYSHQEAHVLAc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_total_Slot2-36_1_8055_diatracer.1007762.1007762.2 [INFO:] Please specify modification and rerun PTMProphet ... ​ [INFO:] processed 183000/195503 spectrum_queries [ERROR:] Cannot initialize for sequence: nSFYPEEVSSMVLTKM[147]KEIAEc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_total_Slot2-36_1_8055_diatracer.1012364.1012364.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nNVATC[160]NYNGFDNESDPTVELYSASPTNYc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_total_Slot2-36_1_8055_diatracer.1013995.1013995.4 [INFO:] Please specify modification and rerun PTMProphet ... ​ [INFO:] processed 184000/195503 spectrum_queries [ERROR:] Cannot initialize for sequence: nSTPGLLSGALVAc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_total_Slot2-36_1_8055_diatracer.1018355.1018355.2 [INFO:] Please specify modification and rerun PTMProphet ... ​ [INFO:] processed 185000/195503 spectrum_queries [ERROR:] Cannot initialize for sequence: nHTSEIPRSLSc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_total_Slot2-36_1_8055_diatracer.1020898.1020898.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nWWSM[147]ATSDQVTFTDc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_total_Slot2-36_1_8055_diatracer.1022595.1022595.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nGAETETAPFWc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_total_Slot2-36_1_8055_diatracer.1024816.1024816.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nFIYMAVQHYIETLc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_total_Slot2-36_1_8055_diatracer.1024992.1024992.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nHAVAGC[160]IISLLWFFGc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_total_Slot2-36_1_8055_diatracer.1025331.1025331.3 [INFO:] Please specify modification and rerun PTMProphet ... ​ [INFO:] processed 186000/195503 spectrum_queries [ERROR:] Cannot initialize for sequence: nPLSPSPPYQSEGGRGKc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_total_Slot2-36_1_8055_diatracer.1025750.1025750.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nLD[202]ENVHTDNc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_total_Slot2-36_1_8055_diatracer.1029181.1029181.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nLSSLDIDVLSKAPSDNAc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_total_Slot2-36_1_8055_diatracer.1029749.1029749.3 [INFO:] Please specify modification and rerun PTMProphet ... ​ [INFO:] processed 187000/195503 spectrum_queries [ERROR:] Cannot initialize for sequence: nWAEAFGVPDVc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_total_Slot2-36_1_8055_diatracer.1031438.1031438.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nLD[202]ENVHTDNc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_total_Slot2-36_1_8055_diatracer.1031776.1031776.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nLFFLSGSPLLc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_total_Slot2-36_1_8055_diatracer.1032142.1032142.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nLVANM[147]LSVAGDc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_total_Slot2-36_1_8055_diatracer.1032534.1032534.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nSLWSPGRNSVc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_total_Slot2-36_1_8055_diatracer.1035157.1035157.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nEQFPSEPSFc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_total_Slot2-36_1_8055_diatracer.1035549.1035549.2 [INFO:] Please specify modification and rerun PTMProphet ... ​ [INFO:] processed 188000/195503 spectrum_queries [ERROR:] Cannot initialize for sequence: nHTSEIPRSLSc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_total_Slot2-36_1_8055_diatracer.1036454.1036454.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nELIAKLDQAEc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_total_Slot2-36_1_8055_diatracer.1036525.1036525.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nLAGGSADTVRSPc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_total_Slot2-36_1_8055_diatracer.1036606.1036606.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nASNGQIGTQHSc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_total_Slot2-36_1_8055_diatracer.1037004.1037004.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nLQSPNLPSRSc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_total_Slot2-36_1_8055_diatracer.1037194.1037194.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nPEGLLRPTSFc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_total_Slot2-36_1_8055_diatracer.1038697.1038697.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nALGQNPTNAESc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_total_Slot2-36_1_8055_diatracer.1040316.1040316.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nDESLEFQKSc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_total_Slot2-36_1_8055_diatracer.1041403.1041403.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nFYVAPEAVALGLLGLLLPVSLLc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_total_Slot2-36_1_8055_diatracer.1042048.1042048.4 [INFO:] Please specify modification and rerun PTMProphet ... ​ [INFO:] processed 189000/195503 spectrum_queries [ERROR:] Cannot initialize for sequence: nEIKDAISGIGTc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_total_Slot2-36_1_8055_diatracer.1042567.1042567.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nPGPSPAPTGYQAQIC[160]Pc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_total_Slot2-36_1_8055_diatracer.1043532.1043532.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nEYLVNITEYRASHSc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_total_Slot2-36_1_8055_diatracer.1045534.1045534.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nDTQALEPC[160]IAc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_total_Slot2-36_1_8055_diatracer.1046376.1046376.2 [INFO:] Please specify modification and rerun PTMProphet ... ​ [INFO:] processed 190000/195503 spectrum_queries [ERROR:] Cannot initialize for sequence: nQEDHLSPGGQVYSQPc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_total_Slot2-36_1_8055_diatracer.1048553.1048553.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nSFTLVAQAGVQc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_total_Slot2-36_1_8055_diatracer.1049080.1049080.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nIPEAGEGQPSVc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_total_Slot2-36_1_8055_diatracer.1049470.1049470.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nDINLASFIEQVAVSMTc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_total_Slot2-36_1_8055_diatracer.1050463.1050463.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nQLDKEQC[160]YTYWSRWNANc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_total_Slot2-36_1_8055_diatracer.1052246.1052246.4 [INFO:] Please specify modification and rerun PTMProphet ... ​ [INFO:] processed 191000/195503 spectrum_queries [ERROR:] Cannot initialize for sequence: nKNSQSQNYIc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_total_Slot2-36_1_8055_diatracer.1054577.1054577.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nPQTWTQVGGNc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_total_Slot2-36_1_8055_diatracer.1054848.1054848.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nLD[202]ENVHTDNc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_total_Slot2-36_1_8055_diatracer.1055128.1055128.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nHAVAGC[160]IISLLWFFGc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_total_Slot2-36_1_8055_diatracer.1056472.1056472.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nYLSISSSLLLc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_total_Slot2-36_1_8055_diatracer.1058066.1058066.2 [INFO:] Please specify modification and rerun PTMProphet ... ​ [INFO:] processed 192000/195503 spectrum_queries [ERROR:] Cannot initialize for sequence: nRNQTLDEKHc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_total_Slot2-36_1_8055_diatracer.1060575.1060575.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nGLFGTAGTLLVNKGEYYEPISVc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_total_Slot2-36_1_8055_diatracer.1060666.1060666.4 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nIQSNNFSYQVFYEc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_total_Slot2-36_1_8055_diatracer.1061222.1061222.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nLAGGSADTVRSPc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_total_Slot2-36_1_8055_diatracer.1062178.1062178.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nLEMPNEDQNENNEAKC[160]LGAQc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_total_Slot2-36_1_8055_diatracer.1062731.1062731.4 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nASIDAAAAAAATSEPPQHc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_total_Slot2-36_1_8055_diatracer.1062780.1062780.3 [INFO:] Please specify modification and rerun PTMProphet ... ​ [INFO:] processed 193000/195503 spectrum_queries [ERROR:] Cannot initialize for sequence: nDFLSFAEKFEAIQEETLQDAc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_total_Slot2-36_1_8055_diatracer.1065753.1065753.4 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nRYASGSSASLGGPESAVAc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_total_Slot2-36_1_8055_diatracer.1067434.1067434.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nENRIRELTANLTFSc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_total_Slot2-36_1_8055_diatracer.1067542.1067542.3 [INFO:] Please specify modification and rerun PTMProphet ... ​ [INFO:] processed 194000/195503 spectrum_queries [ERROR:] Cannot initialize for sequence: nGGPAHSEGPGPPc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_total_Slot2-36_1_8055_diatracer.1071431.1071431.2 [INFO:] Please specify modification and rerun PTMProphet ... ​ [INFO:] processed 195000/195503 spectrum_queries [ERROR:] Cannot initialize for sequence: nKEGENGMPTSAc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_total_Slot2-36_1_8055_diatracer.1074713.1074713.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nRGPGSGRGGAAGAAAAAAAAAAc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_total_Slot2-36_1_8055_diatracer.1075286.1075286.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nESSWPGASVVc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_total_Slot2-36_1_8055_diatracer.1076616.1076616.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nPSGTSHNALKc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_total_Slot2-36_1_8055_diatracer.1076653.1076653.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nGGQVAAAAc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_total_Slot2-36_1_8055_diatracer.1077052.1077052.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nPLSFPSPSADc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_total_Slot2-36_1_8055_diatracer.1077096.1077096.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nSKSLPTPGNSTLGPSc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_total_Slot2-36_1_8055_diatracer.1077719.1077719.4 [INFO:] Please specify modification and rerun PTMProphet ... [INFO:] done ... [INFO:] Computing EM Models ... [INFO:] Iterating PTM Model: ....5...done [INFO:] done ... [INFO:] done ... [INFO:] Creating 1 threads [INFO:] Wait for threads to finish ... [INFO:] Reading file interact-20240927_SW-KF_S1_total_Slot2-36_1_8055_diatracer.pep.xml ... ​ [INFO:] written 1000/195503 spectrum_queries [ERROR:] Cannot initialize for sequence: nLHPFTC[160]NGLQFLEYWEc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_total_Slot2-36_1_8055_diatracer.08662.08662.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nLFLNETQTQEITE[216]D[158]IPc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_total_Slot2-36_1_8055_diatracer.10304.10304.2 [INFO:] Please specify modification and rerun PTMProphet ... ​ [INFO:] written 2000/195503 spectrum_queries [ERROR:] Cannot initialize for sequence: nEDLISAFGTDDQTEIYFDc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_total_Slot2-36_1_8055_diatracer.11523.11523.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nLFLNETQTQEITE[216]D[158]IPc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_total_Slot2-36_1_8055_diatracer.11960.11960.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nLQVGSGAERTSGAC[160]ARc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_total_Slot2-36_1_8055_diatracer.12870.12870.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nLFSNKVGC[160]AAAPLQPAc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_total_Slot2-36_1_8055_diatracer.15132.15132.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nSLNESTVSTSYVNVAc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_total_Slot2-36_1_8055_diatracer.15685.15685.2 [INFO:] Please specify modification and rerun PTMProphet ... ​ [INFO:] written 3000/195503 spectrum_queries [ERROR:] Cannot initialize for sequence: nGHFWPMLSLKPDASc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_total_Slot2-36_1_8055_diatracer.19554.19554.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nGANELAEQLAAASTSAPMAAGLLSSPc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_total_Slot2-36_1_8055_diatracer.19768.19768.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nKNC[160]AQLWLGPAAFINHDLINSc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_total_Slot2-36_1_8055_diatracer.20258.20258.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nPAAM[147]ELDTPC[160]DAEGNc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_total_Slot2-36_1_8055_diatracer.21669.21669.2 [INFO:] Please specify modification and rerun PTMProphet ... ​ [INFO:] written 4000/195503 spectrum_queries [ERROR:] Cannot initialize for sequence: nEDLQPGILMEAEKHc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_total_Slot2-36_1_8055_diatracer.22276.22276.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nYC[160]LTPEYPELGEPAc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_total_Slot2-36_1_8055_diatracer.23053.23053.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nSRELLDNEELQAIFHSKSLC[160]c[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_total_Slot2-36_1_8055_diatracer.26698.26698.3 [INFO:] Please specify modification and rerun PTMProphet ... ​ [INFO:] written 5000/195503 spectrum_queries [ERROR:] Cannot initialize for sequence: nQNGALVHPGSSPPME[216]RNPSSLTQc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_total_Slot2-36_1_8055_diatracer.28177.28177.3 [INFO:] Please specify modification and rerun PTMProphet ... ​ [INFO:] written 6000/195503 spectrum_queries [ERROR:] Cannot initialize for sequence: nPSVSVELGPNGLLMAALLLLAWTAc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_total_Slot2-36_1_8055_diatracer.34213.34213.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nPPFGQGYTQPGPGYRc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_total_Slot2-36_1_8055_diatracer.36742.36742.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nADPHLEFQQFPQSPc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_total_Slot2-36_1_8055_diatracer.37495.37495.2 [INFO:] Please specify modification and rerun PTMProphet ... ​ [INFO:] written 7000/195503 spectrum_queries [ERROR:] Cannot initialize for sequence: nDLFLRLLFDHVDGLTEPGGMNLc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_total_Slot2-36_1_8055_diatracer.40456.40456.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nAQVISMMDLPTNHIGc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_total_Slot2-36_1_8055_diatracer.41666.41666.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nPLFPHWTQLVHGITTGPPAQVEc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_total_Slot2-36_1_8055_diatracer.42085.42085.3 [INFO:] Please specify modification and rerun PTMProphet ... ​ [INFO:] written 8000/195503 spectrum_queries [ERROR:] Cannot initialize for sequence: nMMMRVHWLTLMTSc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_total_Slot2-36_1_8055_diatracer.43611.43611.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nQIDLSSADAAQEHEEDHTSTPNPc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_total_Slot2-36_1_8055_diatracer.47266.47266.3 [INFO:] Please specify modification and rerun PTMProphet ... ​ [INFO:] written 9000/195503 spectrum_queries [ERROR:] Cannot initialize for sequence: nGPQGPPPAGLLHc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_total_Slot2-36_1_8055_diatracer.50560.50560.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nARYFWGNLPGMNSSAKc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_total_Slot2-36_1_8055_diatracer.50759.50759.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nMDEYTTENGVc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_total_Slot2-36_1_8055_diatracer.51970.51970.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nGALDKHSGSSNMLQALDQRVAAAc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_total_Slot2-36_1_8055_diatracer.52589.52589.4 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nVADEVVLPRQc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_total_Slot2-36_1_8055_diatracer.52703.52703.2 [INFO:] Please specify modification and rerun PTMProphet ... ​ [INFO:] written 10000/195503 spectrum_queries [ERROR:] Cannot initialize for sequence: nVYAAGGAPARALPSEQHGc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_total_Slot2-36_1_8055_diatracer.56158.56158.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nTPDSMFLAMLAVVSC[160]Ac[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_total_Slot2-36_1_8055_diatracer.57167.57167.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nPREQNGAIYLPTPDRc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_total_Slot2-36_1_8055_diatracer.57944.57944.3 [INFO:] Please specify modification and rerun PTMProphet ... ​ [INFO:] written 11000/195503 spectrum_queries [ERROR:] Cannot initialize for sequence: nFSGLGFHYYAc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_total_Slot2-36_1_8055_diatracer.59989.59989.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nAAEQAPLMAAAAAAAAAAAGPc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_total_Slot2-36_1_8055_diatracer.60211.60211.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nDLPPAPQPASSPc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_total_Slot2-36_1_8055_diatracer.60846.60846.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nGNIGTGLLGLPLAc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_total_Slot2-36_1_8055_diatracer.62055.62055.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nAYSC[160]KC[160]LAHc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_total_Slot2-36_1_8055_diatracer.62461.62461.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nWTSDSKYIMc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_total_Slot2-36_1_8055_diatracer.63489.63489.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nLLDC[160]TSHISSTQQHYc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_total_Slot2-36_1_8055_diatracer.63585.63585.3 [INFO:] Please specify modification and rerun PTMProphet ... ​ [INFO:] written 12000/195503 spectrum_queries [ERROR:] Cannot initialize for sequence: nSFAISRLEWc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_total_Slot2-36_1_8055_diatracer.64912.64912.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nEISIKEISQEc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_total_Slot2-36_1_8055_diatracer.66253.66253.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nTTELGGAAPSPEc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_total_Slot2-36_1_8055_diatracer.68736.68736.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nAQGAPDAPFHMc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_total_Slot2-36_1_8055_diatracer.69097.69097.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nLVNLQSWDDGERKFSc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_total_Slot2-36_1_8055_diatracer.69204.69204.3 [INFO:] Please specify modification and rerun PTMProphet ... ​ [INFO:] written 13000/195503 spectrum_queries [ERROR:] Cannot initialize for sequence: nGEIGPM[147]GIPGPQGPPGPHc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_total_Slot2-36_1_8055_diatracer.70372.70372.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nPTQAGIRYRKc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_total_Slot2-36_1_8055_diatracer.72062.72062.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nEDPLGEAQPQIc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_total_Slot2-36_1_8055_diatracer.72611.72611.2 [INFO:] Please specify modification and rerun PTMProphet ... ​ [INFO:] written 14000/195503 spectrum_queries [ERROR:] Cannot initialize for sequence: nVYAAGGAPARALPSEQHGc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_total_Slot2-36_1_8055_diatracer.74670.74670.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nPLTPC[160]TDKGSAc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_total_Slot2-36_1_8055_diatracer.74817.74817.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nIIETPPHRYc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_total_Slot2-36_1_8055_diatracer.76431.76431.2 [INFO:] Please specify modification and rerun PTMProphet ... ​ [INFO:] written 15000/195503 spectrum_queries [ERROR:] Cannot initialize for sequence: nHEMVEESPGRc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_total_Slot2-36_1_8055_diatracer.81488.81488.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nFEDSFGVDPYc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_total_Slot2-36_1_8055_diatracer.82015.82015.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nDLGVPGLSSKVINAISAAAc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_total_Slot2-36_1_8055_diatracer.82033.82033.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nVNSMNSSAPEAGc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_total_Slot2-36_1_8055_diatracer.83811.83811.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nTAGAAALPHVPPGc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_total_Slot2-36_1_8055_diatracer.84090.84090.2 [INFO:] Please specify modification and rerun PTMProphet ... ​ [INFO:] written 16000/195503 spectrum_queries [ERROR:] Cannot initialize for sequence: nPRGVASDGGAVRc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_total_Slot2-36_1_8055_diatracer.87730.87730.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nLKVEDALSYLc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_total_Slot2-36_1_8055_diatracer.88079.88079.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nTHLNDKYGYc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_total_Slot2-36_1_8055_diatracer.88758.88758.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nTTAQYYLDM[147]NTFTFDMSTAQc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_total_Slot2-36_1_8055_diatracer.89382.89382.4 [INFO:] Please specify modification and rerun PTMProphet ... ​ [INFO:] written 17000/195503 spectrum_queries [ERROR:] Cannot initialize for sequence: nSTAQHQVGQRc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_total_Slot2-36_1_8055_diatracer.93912.93912.2 [INFO:] Please specify modification and rerun PTMProphet ... ​ [INFO:] written 18000/195503 spectrum_queries [ERROR:] Cannot initialize for sequence: nC[160]ALLHSAAVQEYGYGNc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_total_Slot2-36_1_8055_diatracer.96948.96948.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nGALDKHSGSSNMLQALDQRVAAAc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_total_Slot2-36_1_8055_diatracer.97601.97601.4 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nEVEMAIIEDKDLFVAc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_total_Slot2-36_1_8055_diatracer.99845.99845.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nGMRPEVTLAC[160]LLLATAGC[160]FADLc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_total_Slot2-36_1_8055_diatracer.100068.100068.4 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nSRQGGSTSLNC[160]THAAVSc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_total_Slot2-36_1_8055_diatracer.100115.100115.3 [INFO:] Please specify modification and rerun PTMProphet ... ​ [INFO:] written 19000/195503 spectrum_queries [ERROR:] Cannot initialize for sequence: nHGLVC[160]QEAWSc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_total_Slot2-36_1_8055_diatracer.100836.100836.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nFLGLLIFDSWGTHNAMWTINAc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_total_Slot2-36_1_8055_diatracer.101116.101116.4 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nSPGAVAPM[147]SPGLPc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_total_Slot2-36_1_8055_diatracer.101592.101592.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nATPSENLVPSSAc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_total_Slot2-36_1_8055_diatracer.103123.103123.2 [INFO:] Please specify modification and rerun PTMProphet ... ​ [INFO:] written 20000/195503 spectrum_queries [ERROR:] Cannot initialize for sequence: nDINLASFIEQVAVSMTc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_total_Slot2-36_1_8055_diatracer.106046.106046.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nIEEEALSQPHc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_total_Slot2-36_1_8055_diatracer.107400.107400.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nVLQEYPAVSSAc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_total_Slot2-36_1_8055_diatracer.107724.107724.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nPASELSAQTAAGAc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_total_Slot2-36_1_8055_diatracer.108589.108589.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nAPVEGESQAETAc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_total_Slot2-36_1_8055_diatracer.109289.109289.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nLFAAGALGc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_total_Slot2-36_1_8055_diatracer.109845.109845.2 [INFO:] Please specify modification and rerun PTMProphet ... ​ [INFO:] written 21000/195503 spectrum_queries [ERROR:] Cannot initialize for sequence: nPAVAAARLVVAMLATAc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_total_Slot2-36_1_8055_diatracer.113298.113298.4 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nESVQGAAc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_total_Slot2-36_1_8055_diatracer.113593.113593.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nLRVSANGc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_total_Slot2-36_1_8055_diatracer.113871.113871.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nLEQEEEEEERPEPRQSDc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_total_Slot2-36_1_8055_diatracer.115308.115308.2 [INFO:] Please specify modification and rerun PTMProphet ... ​ [INFO:] written 22000/195503 spectrum_queries [ERROR:] Cannot initialize for sequence: nYILEGYSITDNSAASMLQVc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_total_Slot2-36_1_8055_diatracer.118874.118874.2 [INFO:] Please specify modification and rerun PTMProphet ... ​ [INFO:] written 23000/195503 spectrum_queries [ERROR:] Cannot initialize for sequence: nVDLYGFIMALLEPFLC[160]SIHTEc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_total_Slot2-36_1_8055_diatracer.127422.127422.3 [INFO:] Please specify modification and rerun PTMProphet ... ​ [INFO:] written 24000/195503 spectrum_queries [ERROR:] Cannot initialize for sequence: nPLPEQEQQPRGPRC[160]c[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_total_Slot2-36_1_8055_diatracer.132703.132703.2 [INFO:] Please specify modification and rerun PTMProphet ... ​ [INFO:] written 25000/195503 spectrum_queries [ERROR:] Cannot initialize for sequence: nRELQQVTAGEAASIHc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_total_Slot2-36_1_8055_diatracer.137417.137417.2 [INFO:] Please specify modification and rerun PTMProphet ... ​ [INFO:] written 27000/195503 spectrum_queries [ERROR:] Cannot initialize for sequence: nASDLLAWEQIFEVAVDEFTVSEc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_total_Slot2-36_1_8055_diatracer.147211.147211.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nLQGLEDGAGAGPAENAASc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_total_Slot2-36_1_8055_diatracer.148175.148175.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nRDGLTDSGLHVTYENc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_total_Slot2-36_1_8055_diatracer.149976.149976.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nPVDDPTAPSNLYIQEc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_total_Slot2-36_1_8055_diatracer.150976.150976.2 [INFO:] Please specify modification and rerun PTMProphet ... ​ [INFO:] written 28000/195503 spectrum_queries [ERROR:] Cannot initialize for sequence: nEVVLGTGDMASTNLTRc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_total_Slot2-36_1_8055_diatracer.153963.153963.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nELLSGVSGMAIGAPGPATAc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_total_Slot2-36_1_8055_diatracer.154962.154962.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nAIWNVINWENVTERYMAC[160]KKc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_total_Slot2-36_1_8055_diatracer.154968.154968.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nTIDTTPSGGNTTPSGTGITLDTTLSATETTFEYc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_total_Slot2-36_1_8055_diatracer.156557.156557.4 [INFO:] Please specify modification and rerun PTMProphet ... ​ [INFO:] written 29000/195503 spectrum_queries [ERROR:] Cannot initialize for sequence: nGTGGVDTAAVGGVFDVSNAc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_total_Slot2-36_1_8055_diatracer.157684.157684.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nELIPSLC[160]LPEc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_total_Slot2-36_1_8055_diatracer.159861.159861.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nYTKGDLGC[160]VPGc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_total_Slot2-36_1_8055_diatracer.159871.159871.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nTFSLFVPC[160]SPGc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_total_Slot2-36_1_8055_diatracer.160030.160030.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nPIGLQDLLQPQPQEISTLGPVLSc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_total_Slot2-36_1_8055_diatracer.160841.160841.4 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nGLSSTTC[160]SFSANc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_total_Slot2-36_1_8055_diatracer.160924.160924.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nPPLNGDSLTEYEAGVC[160]Ec[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_total_Slot2-36_1_8055_diatracer.161846.161846.3 [INFO:] Please specify modification and rerun PTMProphet ... ​ [INFO:] written 30000/195503 spectrum_queries [ERROR:] Cannot initialize for sequence: nKAVQGGGATPVVGAVQGPVPc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_total_Slot2-36_1_8055_diatracer.162192.162192.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nHVLSNGAGTSDRc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_total_Slot2-36_1_8055_diatracer.162553.162553.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nLADVAAQAAWPPALAPWGc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_total_Slot2-36_1_8055_diatracer.163063.163063.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nFDQINAVDERc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_total_Slot2-36_1_8055_diatracer.164574.164574.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nLQGGGGELGFMGADAAYAVc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_total_Slot2-36_1_8055_diatracer.164724.164724.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nNIAQNHC[160]C[160]NMFQAGLHNALMKc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_total_Slot2-36_1_8055_diatracer.166091.166091.4 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nAAHQPDSVASGEAc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_total_Slot2-36_1_8055_diatracer.166352.166352.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nQKMAPTSQFFLASGTAQAc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_total_Slot2-36_1_8055_diatracer.166586.166586.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nLPC[160]PGAAVAAEGMc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_total_Slot2-36_1_8055_diatracer.166683.166683.2 [INFO:] Please specify modification and rerun PTMProphet ... ​ [INFO:] written 31000/195503 spectrum_queries [ERROR:] Cannot initialize for sequence: nFLDLNKNPINc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_total_Slot2-36_1_8055_diatracer.168743.168743.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nLLRIQDDGTLLYTM[147]Rc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_total_Slot2-36_1_8055_diatracer.169653.169653.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nFLPIHENTAAAM[147]PRAQc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_total_Slot2-36_1_8055_diatracer.169933.169933.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nDLQEPVVPDPDVSIYLPVLKTMc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_total_Slot2-36_1_8055_diatracer.170275.170275.4 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nSDPAAIVAGAGASAAc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_total_Slot2-36_1_8055_diatracer.170849.170849.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nDM[147]KLVLIGHSIc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_total_Slot2-36_1_8055_diatracer.171733.171733.2 [INFO:] Please specify modification and rerun PTMProphet ... ​ [INFO:] written 32000/195503 spectrum_queries [ERROR:] Cannot initialize for sequence: nPEVDDGTSEEENESDSSSC[160]SSPDc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_total_Slot2-36_1_8055_diatracer.172697.172697.4 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nSQEGLTPSSIYc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_total_Slot2-36_1_8055_diatracer.173394.173394.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nIMELVNIASELPTLEAEc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_total_Slot2-36_1_8055_diatracer.173838.173838.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nNIQPTDIMASEAEFTVSTVC[160]TAVc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_total_Slot2-36_1_8055_diatracer.174037.174037.4 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nVEQAAAAASPSPSSFGTPFc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_total_Slot2-36_1_8055_diatracer.174977.174977.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nVSSSVLPKAAFSc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_total_Slot2-36_1_8055_diatracer.176238.176238.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nPTGLGRRQFGFc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_total_Slot2-36_1_8055_diatracer.176355.176355.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: n[43]QANVPSALPSLPAGSGC[160]VIc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_total_Slot2-36_1_8055_diatracer.176609.176609.3 [INFO:] Please specify modification and rerun PTMProphet ... ​ [INFO:] written 33000/195503 spectrum_queries [ERROR:] Cannot initialize for sequence: nSQEGLTPSSIYc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_total_Slot2-36_1_8055_diatracer.181007.181007.2 [INFO:] Please specify modification and rerun PTMProphet ... ​ [INFO:] written 34000/195503 spectrum_queries [ERROR:] Cannot initialize for sequence: nDVGGLEVLINLLETDEVc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_total_Slot2-36_1_8055_diatracer.184804.184804.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nQHGPGTSPGPARc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_total_Slot2-36_1_8055_diatracer.184973.184973.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nVYIATQGPM[147]PNTVSDFWEMVWc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_total_Slot2-36_1_8055_diatracer.185774.185774.4 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nLLQTC[160]FSSPADDSMDRc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_total_Slot2-36_1_8055_diatracer.186907.186907.3 [INFO:] Please specify modification and rerun PTMProphet ... ​ [INFO:] written 35000/195503 spectrum_queries [ERROR:] Cannot initialize for sequence: nDTVPRAPSQFPc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_total_Slot2-36_1_8055_diatracer.190317.190317.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nPLPSDIAVIMYTSGSTGLc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_total_Slot2-36_1_8055_diatracer.191226.191226.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nAGEPGDSGNWPSGc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_total_Slot2-36_1_8055_diatracer.191374.191374.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nQLSDGQPPPPAQc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_total_Slot2-36_1_8055_diatracer.191383.191383.2 [INFO:] Please specify modification and rerun PTMProphet ... ​ [INFO:] written 37000/195503 spectrum_queries [ERROR:] Cannot initialize for sequence: nQAEAIMVRGQGHQALGAVPSC[160]EGVc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_total_Slot2-36_1_8055_diatracer.198085.198085.4 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nNILERNQTHAc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_total_Slot2-36_1_8055_diatracer.199652.199652.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nIPSALTQSPIC[160]LREHPc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_total_Slot2-36_1_8055_diatracer.201305.201305.3 [INFO:] Please specify modification and rerun PTMProphet ... ​ [INFO:] written 38000/195503 spectrum_queries [ERROR:] Cannot initialize for sequence: nKAVQGGGATPVVGAVQGPVPc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_total_Slot2-36_1_8055_diatracer.203110.203110.3 [INFO:] Please specify modification and rerun PTMProphet ... ​ [INFO:] written 39000/195503 spectrum_queries [ERROR:] Cannot initialize for sequence: nGFLM[147]EGLPSASASGKTEVc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_total_Slot2-36_1_8055_diatracer.208105.208105.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nAAVGC[160]SLSNGGAEc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_total_Slot2-36_1_8055_diatracer.209094.209094.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nPDLESGQTGRTWLLLLPLLLGLGc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_total_Slot2-36_1_8055_diatracer.209370.209370.4 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nIDGVDTHLTVSc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_total_Slot2-36_1_8055_diatracer.210099.210099.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nGEVAAWAAIAWSVIASLDc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_total_Slot2-36_1_8055_diatracer.210362.210362.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nKEPDQASGDLNc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_total_Slot2-36_1_8055_diatracer.211173.211173.2 [INFO:] Please specify modification and rerun PTMProphet ... ​ [INFO:] written 40000/195503 spectrum_queries [ERROR:] Cannot initialize for sequence: nSC[160]GLGPSSAEEEc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_total_Slot2-36_1_8055_diatracer.213403.213403.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nVEQAAAAASPSPSSFGTPFc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_total_Slot2-36_1_8055_diatracer.215427.215427.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nGEALANIADMASAc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_total_Slot2-36_1_8055_diatracer.216792.216792.2 [INFO:] Please specify modification and rerun PTMProphet ... ​ [INFO:] written 41000/195503 spectrum_queries [ERROR:] Cannot initialize for sequence: nPAALAGQPASPPGSc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_total_Slot2-36_1_8055_diatracer.219332.219332.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nLNQNGGNAc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_total_Slot2-36_1_8055_diatracer.223269.223269.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nVHADIQNc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_total_Slot2-36_1_8055_diatracer.223353.223353.2 [INFO:] Please specify modification and rerun PTMProphet ... ​ [INFO:] written 42000/195503 spectrum_queries [ERROR:] Cannot initialize for sequence: nPMGPAGPAAc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_total_Slot2-36_1_8055_diatracer.224707.224707.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nVC[160]GC[160]VNGc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_total_Slot2-36_1_8055_diatracer.225775.225775.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nSM[147]SLPSHc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_total_Slot2-36_1_8055_diatracer.227081.227081.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nSRTLMRASLATc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_total_Slot2-36_1_8055_diatracer.227312.227312.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nHGANARLc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_total_Slot2-36_1_8055_diatracer.227751.227751.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nSPSGRSLGNSESPIVGPc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_total_Slot2-36_1_8055_diatracer.227925.227925.4 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nFEDSFGVDPYc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_total_Slot2-36_1_8055_diatracer.228539.228539.3 [INFO:] Please specify modification and rerun PTMProphet ... ​ [INFO:] written 43000/195503 spectrum_queries [ERROR:] Cannot initialize for sequence: nIYLTADNLVLNLQD[202]ESFTc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_total_Slot2-36_1_8055_diatracer.231173.231173.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nIYLTADNLVLNLQD[202]ESFTc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_total_Slot2-36_1_8055_diatracer.232593.232593.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nKTTASSQENHSSQTDNITLGc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_total_Slot2-36_1_8055_diatracer.233393.233393.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nDHISVGLASRSSSALGNSAWPSc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_total_Slot2-36_1_8055_diatracer.235428.235428.2 [INFO:] Please specify modification and rerun PTMProphet ... ​ [INFO:] written 44000/195503 spectrum_queries [ERROR:] Cannot initialize for sequence: nQMFSDAGSGDDALDGDDDLVIDIPEc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_total_Slot2-36_1_8055_diatracer.239737.239737.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nIHQQEHADDSHLFAVc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_total_Slot2-36_1_8055_diatracer.240269.240269.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nLNLEAINYM[147]AADGDFKIKC[160]VAFDc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_total_Slot2-36_1_8055_diatracer.241594.241594.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nNVESWLAPVSVGGSGGSAc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_total_Slot2-36_1_8055_diatracer.242308.242308.2 [INFO:] Please specify modification and rerun PTMProphet ... ​ [INFO:] written 46000/195503 spectrum_queries [ERROR:] Cannot initialize for sequence: n[43]MAQAIEPMVGMESFAAc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_total_Slot2-36_1_8055_diatracer.249474.249474.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nFGADLLATDYQGNTALc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_total_Slot2-36_1_8055_diatracer.251871.251871.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nFGADLLATDYQGNTALc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_total_Slot2-36_1_8055_diatracer.253268.253268.2 [INFO:] Please specify modification and rerun PTMProphet ... ​ [INFO:] written 47000/195503 spectrum_queries [ERROR:] Cannot initialize for sequence: nINSAVYSADESLSAHKc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_total_Slot2-36_1_8055_diatracer.253953.253953.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nELLSTITDPSVIVMADc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_total_Slot2-36_1_8055_diatracer.254259.254259.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nAASAAGAAGSAGGSSGAAGRRc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_total_Slot2-36_1_8055_diatracer.257285.257285.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nGFLDKQVYTHVHRANGGAGQSPQAGc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_total_Slot2-36_1_8055_diatracer.257738.257738.3 [INFO:] Please specify modification and rerun PTMProphet ... ​ [INFO:] written 48000/195503 spectrum_queries [ERROR:] Cannot initialize for sequence: nGFLDKQVYTHVHRANGGAGQSPQAGc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_total_Slot2-36_1_8055_diatracer.260526.260526.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nVPAFYYIPQANDC[160]Lc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_total_Slot2-36_1_8055_diatracer.261616.261616.2 [INFO:] Please specify modification and rerun PTMProphet ... ​ [INFO:] written 49000/195503 spectrum_queries [ERROR:] Cannot initialize for sequence: nMEGDSVLLEVDGEEVLc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_total_Slot2-36_1_8055_diatracer.267726.267726.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nMVTEVTVTDSDEEVTSc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_total_Slot2-36_1_8055_diatracer.269444.269444.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nPIAFMEASVGTQRGTEc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_total_Slot2-36_1_8055_diatracer.270752.270752.2 [INFO:] Please specify modification and rerun PTMProphet ... ​ [INFO:] written 50000/195503 spectrum_queries [ERROR:] Cannot initialize for sequence: nVQEILLPQPPEc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_total_Slot2-36_1_8055_diatracer.271866.271866.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nATFLEDVAGSGEAc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_total_Slot2-36_1_8055_diatracer.272025.272025.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nDMLLSGSTFNWPYGSGQc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_total_Slot2-36_1_8055_diatracer.273915.273915.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nKELNSANSLHEc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_total_Slot2-36_1_8055_diatracer.275294.275294.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nSLASQFKAPAPSTVRSGWAc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_total_Slot2-36_1_8055_diatracer.275814.275814.3 [INFO:] Please specify modification and rerun PTMProphet ... ​ [INFO:] written 51000/195503 spectrum_queries [ERROR:] Cannot initialize for sequence: nAVQLTQAM[147]DTSTVGVLLAAc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_total_Slot2-36_1_8055_diatracer.279086.279086.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nHGGIRDKIM[147]SSc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_total_Slot2-36_1_8055_diatracer.279262.279262.2 [INFO:] Please specify modification and rerun PTMProphet ... ​ [INFO:] written 52000/195503 spectrum_queries [ERROR:] Cannot initialize for sequence: nMPEAGEEQPQVc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_total_Slot2-36_1_8055_diatracer.281310.281310.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nQIEHDKREMIFEVLAc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_total_Slot2-36_1_8055_diatracer.283929.283929.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nM[147]DDLLAEM[147]QQIEQSNFRQAPQc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_total_Slot2-36_1_8055_diatracer.284309.284309.4 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nLAGEDLGALAEDAc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_total_Slot2-36_1_8055_diatracer.285695.285695.2 [INFO:] Please specify modification and rerun PTMProphet ... ​ [INFO:] written 53000/195503 spectrum_queries [ERROR:] Cannot initialize for sequence: nSDSSRPYSQEKc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_total_Slot2-36_1_8055_diatracer.287964.287964.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nSSGPAHGGC[160]QIDGHFPKYc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_total_Slot2-36_1_8055_diatracer.288374.288374.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nPVQENLYGYKc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_total_Slot2-36_1_8055_diatracer.289056.289056.2 [INFO:] Please specify modification and rerun PTMProphet ... ​ [INFO:] written 54000/195503 spectrum_queries [ERROR:] Cannot initialize for sequence: nRYVLGFVASPKc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_total_Slot2-36_1_8055_diatracer.292654.292654.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nTLAWPSSLDMVAc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_total_Slot2-36_1_8055_diatracer.293297.293297.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nKHGRC[160]EELSIFTESDAc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_total_Slot2-36_1_8055_diatracer.294776.294776.3 [INFO:] Please specify modification and rerun PTMProphet ... ​ [INFO:] written 55000/195503 spectrum_queries [ERROR:] Cannot initialize for sequence: nESLMKVMPYVDILFGNETTYHIc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_total_Slot2-36_1_8055_diatracer.300467.300467.4 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nLIHAELVGPTQLAPSC[160]VTc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_total_Slot2-36_1_8055_diatracer.300756.300756.3 [INFO:] Please specify modification and rerun PTMProphet ... ​ [INFO:] written 56000/195503 spectrum_queries [ERROR:] Cannot initialize for sequence: nTILSGYHRIVQQNAALSc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_total_Slot2-36_1_8055_diatracer.304743.304743.3 [INFO:] Please specify modification and rerun PTMProphet ... ​ [INFO:] written 57000/195503 spectrum_queries [ERROR:] Cannot initialize for sequence: nNSLDSSDSDSALc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_total_Slot2-36_1_8055_diatracer.309154.309154.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nPAQVGDSFGPTWc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_total_Slot2-36_1_8055_diatracer.309673.309673.2 [INFO:] Please specify modification and rerun PTMProphet ... ​ [INFO:] written 58000/195503 spectrum_queries [ERROR:] Cannot initialize for sequence: nVNGASATGPELAGASVAGPGPAATSGGAGVAAc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_total_Slot2-36_1_8055_diatracer.313108.313108.4 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nYFPGFPSSYFPDHPTSSc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_total_Slot2-36_1_8055_diatracer.313135.313135.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nNISLNASMEVYc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_total_Slot2-36_1_8055_diatracer.313295.313295.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nAEGGGGGVGPPAPETc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_total_Slot2-36_1_8055_diatracer.314000.314000.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nFM[147]SVGGPAGVSC[160]SAGGPGGGAAAPC[160]PGGASc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_total_Slot2-36_1_8055_diatracer.314665.314665.4 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nC[160]ILAGDHKQLPPTTVSHc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_total_Slot2-36_1_8055_diatracer.314832.314832.3 [INFO:] Please specify modification and rerun PTMProphet ... ​ [INFO:] written 59000/195503 spectrum_queries [ERROR:] Cannot initialize for sequence: nFRC[160]LQQC[160]LLc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_total_Slot2-36_1_8055_diatracer.318345.318345.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nEHFSLLFSYISSISTSMc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_total_Slot2-36_1_8055_diatracer.318551.318551.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nLSYTTISTLGPGc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_total_Slot2-36_1_8055_diatracer.319464.319464.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nTVIQEALALDRc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_total_Slot2-36_1_8055_diatracer.320621.320621.2 [INFO:] Please specify modification and rerun PTMProphet ... ​ [INFO:] written 60000/195503 spectrum_queries [ERROR:] Cannot initialize for sequence: nRASQSSLESSTGPPC[160]IRSc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_total_Slot2-36_1_8055_diatracer.321521.321521.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nHMLLLAIQEC[160]SEGFGLAc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_total_Slot2-36_1_8055_diatracer.323235.323235.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nVAPGAERAPPPAPTARGSAGAc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_total_Slot2-36_1_8055_diatracer.326166.326166.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nMDLNKSLTELAPVFEQIc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_total_Slot2-36_1_8055_diatracer.326207.326207.3 [INFO:] Please specify modification and rerun PTMProphet ... ​ [INFO:] written 61000/195503 spectrum_queries [ERROR:] Cannot initialize for sequence: nFDLTVRTQKQGDDSSEWGNSFFc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_total_Slot2-36_1_8055_diatracer.327484.327484.4 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nSMVAVMDSDTTGKLGFEEc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_total_Slot2-36_1_8055_diatracer.327683.327683.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nHSGFGSIEGQPHPTAC[160]VC[160]c[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_total_Slot2-36_1_8055_diatracer.328348.328348.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nQPVSPEPGPDADEDGPVLMc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_total_Slot2-36_1_8055_diatracer.328533.328533.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nNTC[160]IIYESHVc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_total_Slot2-36_1_8055_diatracer.328569.328569.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nIHEMLQPGQDQc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_total_Slot2-36_1_8055_diatracer.329216.329216.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nQGAGAPTAPc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_total_Slot2-36_1_8055_diatracer.330565.330565.2 [INFO:] Please specify modification and rerun PTMProphet ... ​ [INFO:] written 62000/195503 spectrum_queries [ERROR:] Cannot initialize for sequence: nRYVLGFVASPKc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_total_Slot2-36_1_8055_diatracer.337045.337045.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nANDLSGVAGc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_total_Slot2-36_1_8055_diatracer.337100.337100.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nDTYDALHMQALPPRc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_total_Slot2-36_1_8055_diatracer.337419.337419.4 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nLSPATAPAVc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_total_Slot2-36_1_8055_diatracer.337600.337600.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nMEGAQAAAVc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_total_Slot2-36_1_8055_diatracer.338071.338071.2 [INFO:] Please specify modification and rerun PTMProphet ... ​ [INFO:] written 63000/195503 spectrum_queries [ERROR:] Cannot initialize for sequence: nFAEMNPPRQGTc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_total_Slot2-36_1_8055_diatracer.340044.340044.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nTNATVLSDc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_total_Slot2-36_1_8055_diatracer.340473.340473.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nALPGQPGGFc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_total_Slot2-36_1_8055_diatracer.341874.341874.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nWTGAFNPc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_total_Slot2-36_1_8055_diatracer.342572.342572.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nPDGDIGPSSc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_total_Slot2-36_1_8055_diatracer.342914.342914.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nC[160]TTPSSGLQRPc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_total_Slot2-36_1_8055_diatracer.343319.343319.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nNAPLC[160]PAPc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_total_Slot2-36_1_8055_diatracer.344650.344650.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nEVQDASAQc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_total_Slot2-36_1_8055_diatracer.344830.344830.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nQGAGAPTAPc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_total_Slot2-36_1_8055_diatracer.345065.345065.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nPSVLRTTELGGAAPSPEc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_total_Slot2-36_1_8055_diatracer.345190.345190.4 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nHLLNGVQc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_total_Slot2-36_1_8055_diatracer.345382.345382.2 [INFO:] Please specify modification and rerun PTMProphet ... ​ [INFO:] written 64000/195503 spectrum_queries [ERROR:] Cannot initialize for sequence: nNTLLDQGc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_total_Slot2-36_1_8055_diatracer.345937.345937.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nAPPSSSVTGAHVAc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_total_Slot2-36_1_8055_diatracer.347864.347864.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nKKEYTDVATGIc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_total_Slot2-36_1_8055_diatracer.348398.348398.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nDLSIC[160]PHc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_total_Slot2-36_1_8055_diatracer.348559.348559.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nQALASNFTVKVc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_total_Slot2-36_1_8055_diatracer.348816.348816.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nAVHVFKSc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_total_Slot2-36_1_8055_diatracer.349395.349395.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nFAEMNPPRQGTc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_total_Slot2-36_1_8055_diatracer.349696.349696.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nGGVQC[160]QTSc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_total_Slot2-36_1_8055_diatracer.351304.351304.2 [INFO:] Please specify modification and rerun PTMProphet ... ​ [INFO:] written 65000/195503 spectrum_queries [ERROR:] Cannot initialize for sequence: nEVTVDTTLAGYHLPKNISPDc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_total_Slot2-36_1_8055_diatracer.355314.355314.2 [INFO:] Please specify modification and rerun PTMProphet ... ​ [INFO:] written 67000/195503 spectrum_queries [ERROR:] Cannot initialize for sequence: nEKLAPVPFFSLLQYEc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_total_Slot2-36_1_8055_diatracer.363678.363678.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nQPHQPSPGTAPAERPASLLYLFAPDc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_total_Slot2-36_1_8055_diatracer.366687.366687.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nAGESLLSFVVQDGAEVPc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_total_Slot2-36_1_8055_diatracer.368003.368003.2 [INFO:] Please specify modification and rerun PTMProphet ... ​ [INFO:] written 68000/195503 spectrum_queries [ERROR:] Cannot initialize for sequence: nEFVFKEPQQQRGC[160]Vc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_total_Slot2-36_1_8055_diatracer.372610.372610.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nVAAAERAEDGAAGGAGALLLVGVAAAVAVAEc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_total_Slot2-36_1_8055_diatracer.374921.374921.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nC[160]VTKSVASGTVSHQAATIRDTLSQGSc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_total_Slot2-36_1_8055_diatracer.375182.375182.3 [INFO:] Please specify modification and rerun PTMProphet ... ​ [INFO:] written 69000/195503 spectrum_queries [ERROR:] Cannot initialize for sequence: nLFTDVIIC[160]VEGKEFPc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_total_Slot2-36_1_8055_diatracer.377842.377842.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nQPHQPSPGTAPAERPASLLYLFAPDc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_total_Slot2-36_1_8055_diatracer.378780.378780.3 [INFO:] Please specify modification and rerun PTMProphet ... ​ [INFO:] written 70000/195503 spectrum_queries [ERROR:] Cannot initialize for sequence: nLAAGQGAGAGQGGGAGGGLGGSGAc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_total_Slot2-36_1_8055_diatracer.384650.384650.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nPGAQLYQFRYVNRQGQVC[160]GQSPPc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_total_Slot2-36_1_8055_diatracer.386140.386140.4 [INFO:] Please specify modification and rerun PTMProphet ... ​ [INFO:] written 71000/195503 spectrum_queries [ERROR:] Cannot initialize for sequence: nAAIEETLLLESSc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_total_Slot2-36_1_8055_diatracer.389268.389268.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nLQVTSIVHSGSWc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_total_Slot2-36_1_8055_diatracer.391183.391183.2 [INFO:] Please specify modification and rerun PTMProphet ... ​ [INFO:] written 72000/195503 spectrum_queries [ERROR:] Cannot initialize for sequence: nEAELSLLLHNVVLLSTNYLGTRRc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_total_Slot2-36_1_8055_diatracer.393405.393405.4 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nSQDLMINSSQFc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_total_Slot2-36_1_8055_diatracer.393470.393470.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nYGKDATNVGDEGGc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_total_Slot2-36_1_8055_diatracer.394112.394112.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nAVEC[160]QPEGTTQDc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_total_Slot2-36_1_8055_diatracer.394528.394528.2 [INFO:] Please specify modification and rerun PTMProphet ... ​ [INFO:] written 73000/195503 spectrum_queries [ERROR:] Cannot initialize for sequence: nLYTQFQEPYLc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_total_Slot2-36_1_8055_diatracer.397725.397725.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nTPALAALAALGAPGPAPTAASSPc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_total_Slot2-36_1_8055_diatracer.399157.399157.3 [INFO:] Please specify modification and rerun PTMProphet ... ​ [INFO:] written 74000/195503 spectrum_queries [ERROR:] Cannot initialize for sequence: nIKEAPETPETEPc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_total_Slot2-36_1_8055_diatracer.402219.402219.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nMIQLSIESPLYSGSSNAGSTc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_total_Slot2-36_1_8055_diatracer.402468.402468.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nWQDIIKEVKFc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_total_Slot2-36_1_8055_diatracer.402599.402599.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nDALVAPAGEPYSGAc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_total_Slot2-36_1_8055_diatracer.403654.403654.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nWQDIIKEVKFc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_total_Slot2-36_1_8055_diatracer.404992.404992.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nNC[160]LC[160]GGLWWRVPLSYPc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_total_Slot2-36_1_8055_diatracer.405348.405348.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nASGAASSVAFPASWc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_total_Slot2-36_1_8055_diatracer.405708.405708.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nKPLDGEYFTLQc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_total_Slot2-36_1_8055_diatracer.405754.405754.2 [INFO:] Please specify modification and rerun PTMProphet ... ​ [INFO:] written 75000/195503 spectrum_queries [ERROR:] Cannot initialize for sequence: nQLGGLQEAEWVAc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_total_Slot2-36_1_8055_diatracer.407572.407572.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nKQNDVFGEAEQc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_total_Slot2-36_1_8055_diatracer.407915.407915.2 [INFO:] Please specify modification and rerun PTMProphet ... ​ [INFO:] written 76000/195503 spectrum_queries [ERROR:] Cannot initialize for sequence: nGSTPYSQDSAYSSc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_total_Slot2-36_1_8055_diatracer.412087.412087.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nAQAPSC[160]QGERMSTISC[160]C[160]c[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_total_Slot2-36_1_8055_diatracer.412786.412786.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: n[43]GYKLQDLTDVQc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_total_Slot2-36_1_8055_diatracer.415437.415437.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nRLVLSWAARPLc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_total_Slot2-36_1_8055_diatracer.415794.415794.2 [INFO:] Please specify modification and rerun PTMProphet ... ​ [INFO:] written 78000/195503 spectrum_queries [ERROR:] Cannot initialize for sequence: nISC[160]RSLSQPSPSPAGGGSQLc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_total_Slot2-36_1_8055_diatracer.422274.422274.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nSPTQSQITVNGNSc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_total_Slot2-36_1_8055_diatracer.423363.423363.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nEVWVSAVEAQSLc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_total_Slot2-36_1_8055_diatracer.425120.425120.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: n[43]MSVGVSTSAPLSPTSGTSVGMSTFSIMc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_total_Slot2-36_1_8055_diatracer.425912.425912.4 [INFO:] Please specify modification and rerun PTMProphet ... ​ [INFO:] written 79000/195503 spectrum_queries [ERROR:] Cannot initialize for sequence: nMNRSFLVQAMTEHDQSVc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_total_Slot2-36_1_8055_diatracer.427206.427206.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nMAEYLFALVYPLNPQDGc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_total_Slot2-36_1_8055_diatracer.427248.427248.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nSYPGHVQPATARc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_total_Slot2-36_1_8055_diatracer.427779.427779.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nHLC[160]LSNC[160]IVATASAILDQc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_total_Slot2-36_1_8055_diatracer.428564.428564.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nNPWPSNLTLVSTNGSSGC[160]Gc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_total_Slot2-36_1_8055_diatracer.429605.429605.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nLQTGWSVHTYQc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_total_Slot2-36_1_8055_diatracer.429815.429815.2 [INFO:] Please specify modification and rerun PTMProphet ... ​ [INFO:] written 80000/195503 spectrum_queries [ERROR:] Cannot initialize for sequence: nQLGGLQEAEWVAc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_total_Slot2-36_1_8055_diatracer.433956.433956.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nSPAEC[160]REEHSKTPEERc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_total_Slot2-36_1_8055_diatracer.434366.434366.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nGSQPSGELLASFELIQREc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_total_Slot2-36_1_8055_diatracer.434853.434853.3 [INFO:] Please specify modification and rerun PTMProphet ... ​ [INFO:] written 81000/195503 spectrum_queries [ERROR:] Cannot initialize for sequence: n[43]GYKLQDLTDVQc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_total_Slot2-36_1_8055_diatracer.437049.437049.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nGPE[172]EGGGKSAGGE[172]Ac[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_total_Slot2-36_1_8055_diatracer.437763.437763.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nMQQEDQEGPPTc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_total_Slot2-36_1_8055_diatracer.438606.438606.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nSPAEC[160]REEHSKTPEERc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_total_Slot2-36_1_8055_diatracer.439157.439157.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nWLSSLPQRFVSLLKGAFAAPTLVWc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_total_Slot2-36_1_8055_diatracer.440701.440701.4 [INFO:] Please specify modification and rerun PTMProphet ... ​ [INFO:] written 82000/195503 spectrum_queries [ERROR:] Cannot initialize for sequence: nGPALPLLRc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_total_Slot2-36_1_8055_diatracer.441953.441953.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nEAVDAAAAPc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_total_Slot2-36_1_8055_diatracer.444019.444019.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nNWGGPGPQGFWLc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_total_Slot2-36_1_8055_diatracer.445466.445466.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nTVSYLGLEc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_total_Slot2-36_1_8055_diatracer.446071.446071.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nAWGGTC[160]GAAc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_total_Slot2-36_1_8055_diatracer.446623.446623.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nGPALPLLRc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_total_Slot2-36_1_8055_diatracer.447484.447484.2 [INFO:] Please specify modification and rerun PTMProphet ... ​ [INFO:] written 83000/195503 spectrum_queries [ERROR:] Cannot initialize for sequence: nMAGSTLTFRTEIc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_total_Slot2-36_1_8055_diatracer.449709.449709.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nHSLTHTPRQDFc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_total_Slot2-36_1_8055_diatracer.451289.451289.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nAATKSFQAGc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_total_Slot2-36_1_8055_diatracer.451414.451414.2 [INFO:] Please specify modification and rerun PTMProphet ... ​ [INFO:] written 84000/195503 spectrum_queries [ERROR:] Cannot initialize for sequence: nTSKSAADGFc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_total_Slot2-36_1_8055_diatracer.454422.454422.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nDGAVPAAAGEc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_total_Slot2-36_1_8055_diatracer.454872.454872.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nFAAGSQLAELLSDc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_total_Slot2-36_1_8055_diatracer.456088.456088.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nAATKSFQAGc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_total_Slot2-36_1_8055_diatracer.457180.457180.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nAAHPTPHLHTLGLc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_total_Slot2-36_1_8055_diatracer.458937.458937.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nQAPSVSPGAc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_total_Slot2-36_1_8055_diatracer.458999.458999.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nTIGSVSRAAc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_total_Slot2-36_1_8055_diatracer.459336.459336.2 [INFO:] Please specify modification and rerun PTMProphet ... ​ [INFO:] written 85000/195503 spectrum_queries [ERROR:] Cannot initialize for sequence: nEIAAPQPPGLTSGEc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_total_Slot2-36_1_8055_diatracer.461731.461731.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nGGGGGGVGGAGSAc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_total_Slot2-36_1_8055_diatracer.461962.461962.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nTC[160]IALILSFLLAc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_total_Slot2-36_1_8055_diatracer.462524.462524.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nGPALPLLRc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_total_Slot2-36_1_8055_diatracer.462542.462542.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nHILHSSKc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_total_Slot2-36_1_8055_diatracer.464887.464887.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nPEGVPRIDc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_total_Slot2-36_1_8055_diatracer.465523.465523.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nDQPAALSDc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_total_Slot2-36_1_8055_diatracer.466203.466203.2 [INFO:] Please specify modification and rerun PTMProphet ... ​ [INFO:] written 86000/195503 spectrum_queries [ERROR:] Cannot initialize for sequence: nLVTATAAATc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_total_Slot2-36_1_8055_diatracer.466281.466281.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nLPGKQVQEc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_total_Slot2-36_1_8055_diatracer.467147.467147.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nENYAAAGAVM[147]SFDc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_total_Slot2-36_1_8055_diatracer.468406.468406.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nGAPATLHPAHVQC[160]AHRc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_total_Slot2-36_1_8055_diatracer.468955.468955.4 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nQLAMVMRYGVNc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_total_Slot2-36_1_8055_diatracer.469209.469209.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nEITHLPDc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_total_Slot2-36_1_8055_diatracer.469232.469232.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nC[160]SSLPYAEGFAYc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_total_Slot2-36_1_8055_diatracer.469720.469720.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nEGAGELEALc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_total_Slot2-36_1_8055_diatracer.469734.469734.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nNSELAPGMc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_total_Slot2-36_1_8055_diatracer.470354.470354.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nAEDADVPRc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_total_Slot2-36_1_8055_diatracer.470739.470739.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nNWGGPGPQGFWLc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_total_Slot2-36_1_8055_diatracer.471822.471822.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nGPALPLLRc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_total_Slot2-36_1_8055_diatracer.472454.472454.2 [INFO:] Please specify modification and rerun PTMProphet ... ​ [INFO:] written 87000/195503 spectrum_queries [ERROR:] Cannot initialize for sequence: nNNLSFIETSALDSTNVE[172]EAFc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_total_Slot2-36_1_8055_diatracer.474844.474844.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nNNLSFIETSALDSTNVE[172]EAFc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_total_Slot2-36_1_8055_diatracer.475850.475850.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nGGSYSQAASSDSAQGSD[158]VSLTAC[160]c[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_total_Slot2-36_1_8055_diatracer.476427.476427.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nGGSYSQAASSDSAQGSD[158]VSLTAC[160]c[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_total_Slot2-36_1_8055_diatracer.477235.477235.2 [INFO:] Please specify modification and rerun PTMProphet ... ​ [INFO:] written 88000/195503 spectrum_queries [ERROR:] Cannot initialize for sequence: nTASLARSWDSMPPRWSc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_total_Slot2-36_1_8055_diatracer.480737.480737.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nDQMQQLLTQVVSTLDQVTKPDTEAc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_total_Slot2-36_1_8055_diatracer.482045.482045.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nRVEVNGEHATVRFAGVVPPVADGVLLC[160]HPGWSAVAc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_total_Slot2-36_1_8055_diatracer.483794.483794.4 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nLNHQSSYSSAVPSISAC[160]c[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_total_Slot2-36_1_8055_diatracer.484224.484224.2 [INFO:] Please specify modification and rerun PTMProphet ... ​ [INFO:] written 89000/195503 spectrum_queries [ERROR:] Cannot initialize for sequence: nFNGKLC[160]ADC[160]SVGEHRSc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_total_Slot2-36_1_8055_diatracer.485937.485937.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nLDQKDLVLPTQALPASPc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_total_Slot2-36_1_8055_diatracer.486242.486242.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nNPHGPLSASNAGPSIKC[160]Ac[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_total_Slot2-36_1_8055_diatracer.486798.486798.2 [INFO:] Please specify modification and rerun PTMProphet ... ​ [INFO:] written 90000/195503 spectrum_queries [ERROR:] Cannot initialize for sequence: nGLQEELAAALEPGPGPVGPc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_total_Slot2-36_1_8055_diatracer.492919.492919.2 [INFO:] Please specify modification and rerun PTMProphet ... ​ [INFO:] written 91000/195503 spectrum_queries [ERROR:] Cannot initialize for sequence: nGNTLYVYGEDMTPTLLRGAFSPFGNIIDLSM[147]DPc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_total_Slot2-36_1_8055_diatracer.499797.499797.4 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nYQSVTLLLSKLC[160]ATSDc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_total_Slot2-36_1_8055_diatracer.502666.502666.2 [INFO:] Please specify modification and rerun PTMProphet ... ​ [INFO:] written 92000/195503 spectrum_queries [ERROR:] Cannot initialize for sequence: nAVLYFTGEAIEDDDNPDMc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_total_Slot2-36_1_8055_diatracer.505547.505547.3 [INFO:] Please specify modification and rerun PTMProphet ... ​ [INFO:] written 93000/195503 spectrum_queries [ERROR:] Cannot initialize for sequence: nLEGGVAYNVIPATMSASFDFc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_total_Slot2-36_1_8055_diatracer.508609.508609.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nISNIIMSIESSDM[147]SVTVTHc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_total_Slot2-36_1_8055_diatracer.508718.508718.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nEWVPESAPVLEQDPTTRNc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_total_Slot2-36_1_8055_diatracer.510258.510258.3 [INFO:] Please specify modification and rerun PTMProphet ... ​ [INFO:] written 94000/195503 spectrum_queries [ERROR:] Cannot initialize for sequence: nQSFHMAM[147]GNPSEFFVDVMc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_total_Slot2-36_1_8055_diatracer.515583.515583.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nQPSFQGSTFDITc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_total_Slot2-36_1_8055_diatracer.517284.517284.2 [INFO:] Please specify modification and rerun PTMProphet ... ​ [INFO:] written 95000/195503 spectrum_queries [ERROR:] Cannot initialize for sequence: nAETAAAAPSAAATAPAAGGIPPQSc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_total_Slot2-36_1_8055_diatracer.518065.518065.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nELDQKHGEPVATAVPGYSLTc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_total_Slot2-36_1_8055_diatracer.518485.518485.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nQLAAEAPSSFMSEc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_total_Slot2-36_1_8055_diatracer.519563.519563.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nAPQTSSQRTAAKEPPGSEPSAFAFLNAc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_total_Slot2-36_1_8055_diatracer.521482.521482.4 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nIDSVAGINYGLVAPPATTAETLDVQMKc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_total_Slot2-36_1_8055_diatracer.522489.522489.4 [INFO:] Please specify modification and rerun PTMProphet ... ​ [INFO:] written 96000/195503 spectrum_queries [ERROR:] Cannot initialize for sequence: nPEQINIDLPLEGc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_total_Slot2-36_1_8055_diatracer.524683.524683.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nIFLEGANGAPAHTVc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_total_Slot2-36_1_8055_diatracer.525480.525480.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nIKEGNLTC[160]GPGEVc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_total_Slot2-36_1_8055_diatracer.526603.526603.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nLETFLSLLVQNLAPAETHTc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_total_Slot2-36_1_8055_diatracer.527105.527105.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nAESVATSASHSTTHc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_total_Slot2-36_1_8055_diatracer.527147.527147.2 [INFO:] Please specify modification and rerun PTMProphet ... ​ [INFO:] written 97000/195503 spectrum_queries [ERROR:] Cannot initialize for sequence: nGPAEAGC[160]LPGAQAGSc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_total_Slot2-36_1_8055_diatracer.529189.529189.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nD[158]LSHWETRTYEFTLQSc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_total_Slot2-36_1_8055_diatracer.529499.529499.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nEAMLEPLYKEEc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_total_Slot2-36_1_8055_diatracer.530137.530137.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nSARLAAGQGAGAGQGGGAGGGLGGSGAc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_total_Slot2-36_1_8055_diatracer.530668.530668.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nVGSHPEGGASWLSTAANFLSRSFYWc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_total_Slot2-36_1_8055_diatracer.530742.530742.4 [INFO:] Please specify modification and rerun PTMProphet ... ​ [INFO:] written 98000/195503 spectrum_queries [ERROR:] Cannot initialize for sequence: n[43]GGLSTVGAC[160]PGILGAQQGEDLVPEPADEc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_total_Slot2-36_1_8055_diatracer.533352.533352.4 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nGYLAAVPYALPATc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_total_Slot2-36_1_8055_diatracer.537089.537089.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nVGSHPEGGASWLSTAANFLSRSFYWc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_total_Slot2-36_1_8055_diatracer.537535.537535.4 [INFO:] Please specify modification and rerun PTMProphet ... ​ [INFO:] written 99000/195503 spectrum_queries [ERROR:] Cannot initialize for sequence: nQELSSLQPALQITSGNQHFc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_total_Slot2-36_1_8055_diatracer.538455.538455.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nREKAQGDQSQSYc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_total_Slot2-36_1_8055_diatracer.538966.538966.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nEGGLSPGHGAPGLPLWRESDGGSAQVLHc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_total_Slot2-36_1_8055_diatracer.541071.541071.4 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nEPLEPIDRGTYSSFIDLAc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_total_Slot2-36_1_8055_diatracer.541910.541910.3 [INFO:] Please specify modification and rerun PTMProphet ... ​ [INFO:] written 100000/195503 spectrum_queries [ERROR:] Cannot initialize for sequence: nDHSAAAAATASAAPDLGPDLMDc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_total_Slot2-36_1_8055_diatracer.543272.543272.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nVAELEAQAASEVTc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_total_Slot2-36_1_8055_diatracer.544101.544101.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nQEVATFSQRAVSDTLMTINc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_total_Slot2-36_1_8055_diatracer.545604.545604.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nLGPGPGLGAASGLGAGGEGGGDGAAAAc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_total_Slot2-36_1_8055_diatracer.546386.546386.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nSLGLSSQTPM[147]LTSc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_total_Slot2-36_1_8055_diatracer.547570.547570.2 [INFO:] Please specify modification and rerun PTMProphet ... ​ [INFO:] written 101000/195503 spectrum_queries [ERROR:] Cannot initialize for sequence: nYVC[160]TTPPLGLAQGTGNDWEc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_total_Slot2-36_1_8055_diatracer.549127.549127.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nLSSMSEGLSDMPEc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_total_Slot2-36_1_8055_diatracer.549596.549596.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nEGRQAGPAGAVAAPAAc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_total_Slot2-36_1_8055_diatracer.550241.550241.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nSTLQSTQVQQQESQRQVAc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_total_Slot2-36_1_8055_diatracer.551674.551674.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nPEVEVRGMISAFc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_total_Slot2-36_1_8055_diatracer.551757.551757.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nSISNPPGSNLRTTc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_total_Slot2-36_1_8055_diatracer.552426.552426.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nDAVEMIMVSWKc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_total_Slot2-36_1_8055_diatracer.553018.553018.2 [INFO:] Please specify modification and rerun PTMProphet ... ​ [INFO:] written 102000/195503 spectrum_queries [ERROR:] Cannot initialize for sequence: nALGSLVPQIAPVGC[160]c[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_total_Slot2-36_1_8055_diatracer.554357.554357.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nGEVVRVNLSSSKAc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_total_Slot2-36_1_8055_diatracer.555364.555364.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nC[160]LFLGELKDDINc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_total_Slot2-36_1_8055_diatracer.556413.556413.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nGPMNQC[160]LVATGTHc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_total_Slot2-36_1_8055_diatracer.556540.556540.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nRDPSPVSGEc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_total_Slot2-36_1_8055_diatracer.556573.556573.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nSEDLGLSSGc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_total_Slot2-36_1_8055_diatracer.557195.557195.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nELISMSAEGDGPQAc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_total_Slot2-36_1_8055_diatracer.559128.559128.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nISC[160]TGRLM[147]VQAVc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_total_Slot2-36_1_8055_diatracer.559157.559157.3 [INFO:] Please specify modification and rerun PTMProphet ... ​ [INFO:] written 103000/195503 spectrum_queries [ERROR:] Cannot initialize for sequence: nKENEGFGFc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_total_Slot2-36_1_8055_diatracer.559294.559294.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nC[160]NTFQLVRAGAAGQEGRc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_total_Slot2-36_1_8055_diatracer.560845.560845.4 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nQAHVDVKFQLPIc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_total_Slot2-36_1_8055_diatracer.562676.562676.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nLGGIGHTPAGPYDGVc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_total_Slot2-36_1_8055_diatracer.562930.562930.3 [INFO:] Please specify modification and rerun PTMProphet ... ​ [INFO:] written 104000/195503 spectrum_queries [ERROR:] Cannot initialize for sequence: nWGLDGATQGc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_total_Slot2-36_1_8055_diatracer.567468.567468.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nVDAAPLRNGKLTFc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_total_Slot2-36_1_8055_diatracer.568024.568024.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nVGEGPPGFLc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_total_Slot2-36_1_8055_diatracer.569843.569843.2 [INFO:] Please specify modification and rerun PTMProphet ... ​ [INFO:] written 105000/195503 spectrum_queries [ERROR:] Cannot initialize for sequence: nPLYTLLVDc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_total_Slot2-36_1_8055_diatracer.572188.572188.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nC[160]LFLGELKDDINc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_total_Slot2-36_1_8055_diatracer.572322.572322.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nYVALLLSTKLWEc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_total_Slot2-36_1_8055_diatracer.572431.572431.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nASGVGLPGGWc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_total_Slot2-36_1_8055_diatracer.572718.572718.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nTSSARGSGSNPDTAGc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_total_Slot2-36_1_8055_diatracer.575216.575216.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nMMQQEIIQHAIEEITAc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_total_Slot2-36_1_8055_diatracer.576807.576807.4 [INFO:] Please specify modification and rerun PTMProphet ... ​ [INFO:] written 106000/195503 spectrum_queries [ERROR:] Cannot initialize for sequence: nRLHPGGSSQc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_total_Slot2-36_1_8055_diatracer.577733.577733.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nEIEVEMC[160]LYC[160]Vc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_total_Slot2-36_1_8055_diatracer.577963.577963.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nM[147]EGAQAAAVc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_total_Slot2-36_1_8055_diatracer.578268.578268.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nQLFSPHSQc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_total_Slot2-36_1_8055_diatracer.579347.579347.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nAGGVLVASHLQSFLc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_total_Slot2-36_1_8055_diatracer.580378.580378.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nLGALALSPKc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_total_Slot2-36_1_8055_diatracer.581984.581984.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nVPNQVLHQKLLLc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_total_Slot2-36_1_8055_diatracer.583080.583080.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nNC[160]GTWLMVLERc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_total_Slot2-36_1_8055_diatracer.583506.583506.3 [INFO:] Please specify modification and rerun PTMProphet ... ​ [INFO:] written 107000/195503 spectrum_queries [ERROR:] Cannot initialize for sequence: nPPQTQSSGLc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_total_Slot2-36_1_8055_diatracer.583760.583760.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nGSASVAQKGAc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_total_Slot2-36_1_8055_diatracer.583846.583846.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nPPQTQSSGLc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_total_Slot2-36_1_8055_diatracer.585540.585540.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nLTMLQETLNLPPc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_total_Slot2-36_1_8055_diatracer.586004.586004.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nQLFTVTLIVTRIKMAKc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_total_Slot2-36_1_8055_diatracer.586308.586308.4 [INFO:] Please specify modification and rerun PTMProphet ... ​ [INFO:] written 108000/195503 spectrum_queries [ERROR:] Cannot initialize for sequence: nEKTEMEGVc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_total_Slot2-36_1_8055_diatracer.590887.590887.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nC[160]LFLGELKDDINc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_total_Slot2-36_1_8055_diatracer.591765.591765.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nSC[160]SAGHSITSRFSc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_total_Slot2-36_1_8055_diatracer.591950.591950.3 [INFO:] Please specify modification and rerun PTMProphet ... ​ [INFO:] written 109000/195503 spectrum_queries [ERROR:] Cannot initialize for sequence: nESVGLGSARGTTTTHLVQPDVDGLESSPGc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_total_Slot2-36_1_8055_diatracer.599660.599660.3 [INFO:] Please specify modification and rerun PTMProphet ... ​ [INFO:] written 110000/195503 spectrum_queries [ERROR:] Cannot initialize for sequence: nPMQLMGFTLSGLVDTGQPc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_total_Slot2-36_1_8055_diatracer.602608.602608.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nASSAQAGAAAEAPGSPAGLPAPc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_total_Slot2-36_1_8055_diatracer.602620.602620.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nIVQTDYFQNQRTINDc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_total_Slot2-36_1_8055_diatracer.602701.602701.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nALSEDSAPTNDTAANSASPPAETELQAMc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_total_Slot2-36_1_8055_diatracer.604311.604311.3 [INFO:] Please specify modification and rerun PTMProphet ... ​ [INFO:] written 111000/195503 spectrum_queries [ERROR:] Cannot initialize for sequence: nSRHKWNWPQGSWGLGGc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_total_Slot2-36_1_8055_diatracer.608864.608864.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nASSAQAGAAAEAPGSPAGLPAPc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_total_Slot2-36_1_8055_diatracer.610800.610800.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nSRHKWNWPQGSWGLGGc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_total_Slot2-36_1_8055_diatracer.610914.610914.2 [INFO:] Please specify modification and rerun PTMProphet ... ​ [INFO:] written 113000/195503 spectrum_queries [ERROR:] Cannot initialize for sequence: nENALM[147]PNWYELGQMSAc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_total_Slot2-36_1_8055_diatracer.620547.620547.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nEQEELALFVAARc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_total_Slot2-36_1_8055_diatracer.623089.623089.2 [INFO:] Please specify modification and rerun PTMProphet ... ​ [INFO:] written 114000/195503 spectrum_queries [ERROR:] Cannot initialize for sequence: nVLSPTSVFKSC[160]AFc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_total_Slot2-36_1_8055_diatracer.626169.626169.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nSTPDESPEPVAAAGDc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_total_Slot2-36_1_8055_diatracer.628226.628226.2 [INFO:] Please specify modification and rerun PTMProphet ... ​ [INFO:] written 116000/195503 spectrum_queries [ERROR:] Cannot initialize for sequence: nVAPSTFSFLSAMSTc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_total_Slot2-36_1_8055_diatracer.636930.636930.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nDLLC[160]GGASPASYNLc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_total_Slot2-36_1_8055_diatracer.638992.638992.2 [INFO:] Please specify modification and rerun PTMProphet ... ​ [INFO:] written 117000/195503 spectrum_queries [ERROR:] Cannot initialize for sequence: nENLLPFVGLNNLGc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_total_Slot2-36_1_8055_diatracer.643335.643335.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nLQSAQSSQTSWSTc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_total_Slot2-36_1_8055_diatracer.643925.643925.2 [INFO:] Please specify modification and rerun PTMProphet ... ​ [INFO:] written 118000/195503 spectrum_queries [ERROR:] Cannot initialize for sequence: nFDTQQSDMSGANGc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_total_Slot2-36_1_8055_diatracer.647874.647874.2 [INFO:] Please specify modification and rerun PTMProphet ... ​ [INFO:] written 119000/195503 spectrum_queries [ERROR:] Cannot initialize for sequence: nEYNILYGNVSQTPLLDQKc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_total_Slot2-36_1_8055_diatracer.654632.654632.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nAPAADAAPAGPSSC[160]LGc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_total_Slot2-36_1_8055_diatracer.654710.654710.2 [INFO:] Please specify modification and rerun PTMProphet ... ​ [INFO:] written 120000/195503 spectrum_queries [ERROR:] Cannot initialize for sequence: nISDSAVTMDGQAVEVVTLEQc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_total_Slot2-36_1_8055_diatracer.656910.656910.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nLFSAGRDLVAEDEc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_total_Slot2-36_1_8055_diatracer.661505.661505.2 [INFO:] Please specify modification and rerun PTMProphet ... ​ [INFO:] written 121000/195503 spectrum_queries [ERROR:] Cannot initialize for sequence: nWFHSSC[160]YQPFC[160]RSGFYc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_total_Slot2-36_1_8055_diatracer.661969.661969.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nSLVRYSAAAAAAEGDRLEAEQc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_total_Slot2-36_1_8055_diatracer.662413.662413.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nPALPDPALPLQMLc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_total_Slot2-36_1_8055_diatracer.663675.663675.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nLSYGTVC[160]MLWAHTEVC[160]VMc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_total_Slot2-36_1_8055_diatracer.663917.663917.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nVEVVSPATPVPSETAPASVFPc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_total_Slot2-36_1_8055_diatracer.665139.665139.3 [INFO:] Please specify modification and rerun PTMProphet ... ​ [INFO:] written 122000/195503 spectrum_queries [ERROR:] Cannot initialize for sequence: nIQNDLHRQQYSc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_total_Slot2-36_1_8055_diatracer.667140.667140.2 [INFO:] Please specify modification and rerun PTMProphet ... ​ [INFO:] written 123000/195503 spectrum_queries [ERROR:] Cannot initialize for sequence: nEQGGVILLRc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_total_Slot2-36_1_8055_diatracer.674825.674825.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nNIVTVFPFSKAGRc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_total_Slot2-36_1_8055_diatracer.676697.676697.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nGAVTGAKDAVTTTVTGc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_total_Slot2-36_1_8055_diatracer.676761.676761.3 [INFO:] Please specify modification and rerun PTMProphet ... ​ [INFO:] written 124000/195503 spectrum_queries [ERROR:] Cannot initialize for sequence: nLLGEAAAAPLc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_total_Slot2-36_1_8055_diatracer.678358.678358.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nKC[160]IC[160]SQASHRGHc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_total_Slot2-36_1_8055_diatracer.678665.678665.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nRDVAVAEEVc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_total_Slot2-36_1_8055_diatracer.679148.679148.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nIVTGPHVC[160]Lc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_total_Slot2-36_1_8055_diatracer.679563.679563.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nLSDGSKESSc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_total_Slot2-36_1_8055_diatracer.679950.679950.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nYFPDSLLQVLSVVc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_total_Slot2-36_1_8055_diatracer.680546.680546.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nNALKNM[147]MGLNSDKc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_total_Slot2-36_1_8055_diatracer.683087.683087.3 [INFO:] Please specify modification and rerun PTMProphet ... ​ [INFO:] written 125000/195503 spectrum_queries [ERROR:] Cannot initialize for sequence: nGITYFAYLIQGSHc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_total_Slot2-36_1_8055_diatracer.684699.684699.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nKLELDVPAAc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_total_Slot2-36_1_8055_diatracer.686344.686344.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nGHC[160]DLLTATPFGFc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_total_Slot2-36_1_8055_diatracer.687049.687049.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nHILDGTAEEc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_total_Slot2-36_1_8055_diatracer.687335.687335.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nILGGLNGGEEc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_total_Slot2-36_1_8055_diatracer.688439.688439.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nAEGLM[147]LEKEVGALLLLVMc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_total_Slot2-36_1_8055_diatracer.688472.688472.4 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nTHPLLPTRc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_total_Slot2-36_1_8055_diatracer.689097.689097.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nM[147]GSRTMTSSc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_total_Slot2-36_1_8055_diatracer.689101.689101.2 [INFO:] Please specify modification and rerun PTMProphet ... ​ [INFO:] written 126000/195503 spectrum_queries [ERROR:] Cannot initialize for sequence: nPEGGGAPGAAQAc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_total_Slot2-36_1_8055_diatracer.689639.689639.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nVGSVLE[172]EVAAAAEGGVc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_total_Slot2-36_1_8055_diatracer.691592.691592.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nSHAEIAEQAc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_total_Slot2-36_1_8055_diatracer.692685.692685.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nMAQGFAVGFDPLGLc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_total_Slot2-36_1_8055_diatracer.692950.692950.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nQKIYC[160]HILDPTKc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_total_Slot2-36_1_8055_diatracer.694407.694407.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nHQAPEPAGGPc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_total_Slot2-36_1_8055_diatracer.694876.694876.2 [INFO:] Please specify modification and rerun PTMProphet ... ​ [INFO:] written 127000/195503 spectrum_queries [ERROR:] Cannot initialize for sequence: nNGTSPLHILAAAIGQGc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_total_Slot2-36_1_8055_diatracer.696609.696609.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nPAEAQELSNc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_total_Slot2-36_1_8055_diatracer.696729.696729.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nENLPQMQNVSEEc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_total_Slot2-36_1_8055_diatracer.697156.697156.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nSLGKVGEGGALGPGKGQc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_total_Slot2-36_1_8055_diatracer.698480.698480.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nIKPTGLLTIPSPQIc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_total_Slot2-36_1_8055_diatracer.699669.699669.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nPEGGGAPGAAQAc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_total_Slot2-36_1_8055_diatracer.700255.700255.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nVALSSPAAAPAc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_total_Slot2-36_1_8055_diatracer.701057.701057.2 [INFO:] Please specify modification and rerun PTMProphet ... ​ [INFO:] written 128000/195503 spectrum_queries [ERROR:] Cannot initialize for sequence: nGAVTGAKDAVTTTVTGc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_total_Slot2-36_1_8055_diatracer.702334.702334.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nTFLAQHASLc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_total_Slot2-36_1_8055_diatracer.702474.702474.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nKLELDVPAAc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_total_Slot2-36_1_8055_diatracer.703312.703312.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nYFLPADADPDTYSc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_total_Slot2-36_1_8055_diatracer.703899.703899.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nFMELNAAKLREEc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_total_Slot2-36_1_8055_diatracer.704495.704495.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nAPIAGFSSFVc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_total_Slot2-36_1_8055_diatracer.704682.704682.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nENAIKYWTLWHc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_total_Slot2-36_1_8055_diatracer.704859.704859.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nSHAEIAEQAc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_total_Slot2-36_1_8055_diatracer.705390.705390.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nSVEVHGAVGASGC[160]PAAc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_total_Slot2-36_1_8055_diatracer.705930.705930.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nMLEMGAIKNLTSFc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_total_Slot2-36_1_8055_diatracer.706677.706677.3 [INFO:] Please specify modification and rerun PTMProphet ... ​ [INFO:] written 129000/195503 spectrum_queries [ERROR:] Cannot initialize for sequence: nHILDGTAEEc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_total_Slot2-36_1_8055_diatracer.708562.708562.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nWLQHLEENEAGQEQRTc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_total_Slot2-36_1_8055_diatracer.708818.708818.4 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nQAAAQLLLPGc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_total_Slot2-36_1_8055_diatracer.710940.710940.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nSQAIGAGLEDc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_total_Slot2-36_1_8055_diatracer.711960.711960.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nAGAGPGRSSSSc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_total_Slot2-36_1_8055_diatracer.712480.712480.2 [INFO:] Please specify modification and rerun PTMProphet ... ​ [INFO:] written 130000/195503 spectrum_queries [ERROR:] Cannot initialize for sequence: nGITYFAYLIQGSHc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_total_Slot2-36_1_8055_diatracer.714101.714101.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nPGSLTYLTLHYLSc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_total_Slot2-36_1_8055_diatracer.714164.714164.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nGSSHPPTSASc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_total_Slot2-36_1_8055_diatracer.714257.714257.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nNSPATLFEVPDTWc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_total_Slot2-36_1_8055_diatracer.716401.716401.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nKLELDVPAAc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_total_Slot2-36_1_8055_diatracer.718167.718167.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nQASPPSNNASc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_total_Slot2-36_1_8055_diatracer.718658.718658.2 [INFO:] Please specify modification and rerun PTMProphet ... ​ [INFO:] written 131000/195503 spectrum_queries [ERROR:] Cannot initialize for sequence: nSQLQLHLQAAQC[160]FANGAASWNKAMKFc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_total_Slot2-36_1_8055_diatracer.722850.722850.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nSQLQLHLQAAQC[160]FANGAASWNKAMKFc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_total_Slot2-36_1_8055_diatracer.723699.723699.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nWVLQDSQDENTKYIEc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_total_Slot2-36_1_8055_diatracer.724938.724938.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nSQLQLHLQAAQC[160]FANGAASWNKAMKFc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_total_Slot2-36_1_8055_diatracer.725396.725396.3 [INFO:] Please specify modification and rerun PTMProphet ... ​ [INFO:] written 132000/195503 spectrum_queries [ERROR:] Cannot initialize for sequence: nSQLQLHLQAAQC[160]FANGAASWNKAMKFc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_total_Slot2-36_1_8055_diatracer.726243.726243.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: n[43]MSVDLPGEYDSSFHPSTc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_total_Slot2-36_1_8055_diatracer.727559.727559.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nQVIEMFNASC[160]LPYVPEc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_total_Slot2-36_1_8055_diatracer.728915.728915.2 [INFO:] Please specify modification and rerun PTMProphet ... ​ [INFO:] written 134000/195503 spectrum_queries [ERROR:] Cannot initialize for sequence: nMAGLKVLQLINDNTATALc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_total_Slot2-36_1_8055_diatracer.738992.738992.2 [INFO:] Please specify modification and rerun PTMProphet ... ​ [INFO:] written 135000/195503 spectrum_queries [ERROR:] Cannot initialize for sequence: nHYLDNHGPAARTSc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_total_Slot2-36_1_8055_diatracer.745063.745063.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nIGTLDALC[160]FLNC[160]HC[160]DELSAGNPVFSASc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_total_Slot2-36_1_8055_diatracer.748239.748239.4 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nSLQVLLLLLLLAAALC[160]PWLEc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_total_Slot2-36_1_8055_diatracer.749118.749118.3 [INFO:] Please specify modification and rerun PTMProphet ... ​ [INFO:] written 136000/195503 spectrum_queries [ERROR:] Cannot initialize for sequence: nVLQQVSQGGGAIWLc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_total_Slot2-36_1_8055_diatracer.749562.749562.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nVEAALAAELLC[160]FASLLLLSRc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_total_Slot2-36_1_8055_diatracer.749795.749795.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nDQAQPSPVTQPGASAc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_total_Slot2-36_1_8055_diatracer.751636.751636.2 [INFO:] Please specify modification and rerun PTMProphet ... ​ [INFO:] written 137000/195503 spectrum_queries [ERROR:] Cannot initialize for sequence: nLLQSLLLWIAPLYSRFLSAc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_total_Slot2-36_1_8055_diatracer.755018.755018.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nAPAADAAPAGPSSC[160]LGc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_total_Slot2-36_1_8055_diatracer.755768.755768.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nDIVIALFFSRIYLLTFLLLc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_total_Slot2-36_1_8055_diatracer.759425.759425.3 [INFO:] Please specify modification and rerun PTMProphet ... ​ [INFO:] written 138000/195503 spectrum_queries [ERROR:] Cannot initialize for sequence: nGWC[160]EDMLNYRIc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_total_Slot2-36_1_8055_diatracer.763426.763426.2 [INFO:] Please specify modification and rerun PTMProphet ... ​ [INFO:] written 139000/195503 spectrum_queries [ERROR:] Cannot initialize for sequence: nLTFSPFQVLSLLLVLQPPPHc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_total_Slot2-36_1_8055_diatracer.766737.766737.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nLEKLAGVC[160]GLLAIGc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_total_Slot2-36_1_8055_diatracer.767750.767750.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nVLMSVQYFLEDVc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_total_Slot2-36_1_8055_diatracer.768581.768581.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nDQAQPSPVTQPGASAc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_total_Slot2-36_1_8055_diatracer.769329.769329.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nGQGQWAPTC[160]TLPGPc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_total_Slot2-36_1_8055_diatracer.769963.769963.2 [INFO:] Please specify modification and rerun PTMProphet ... ​ [INFO:] written 140000/195503 spectrum_queries [ERROR:] Cannot initialize for sequence: nLQGTPSNKEQQGSLc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_total_Slot2-36_1_8055_diatracer.772996.772996.2 [INFO:] Please specify modification and rerun PTMProphet ... ​ [INFO:] written 141000/195503 spectrum_queries [ERROR:] Cannot initialize for sequence: nQLSQPSFQIC[160]HNc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_total_Slot2-36_1_8055_diatracer.775472.775472.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nAIQDGTIVLMGTYDc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_total_Slot2-36_1_8055_diatracer.776961.776961.2 [INFO:] Please specify modification and rerun PTMProphet ... ​ [INFO:] written 142000/195503 spectrum_queries [ERROR:] Cannot initialize for sequence: nYKEELIEKM[147]QEc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_total_Slot2-36_1_8055_diatracer.781290.781290.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nLQGIDSHMLLQQPLIYC[160]Hc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_total_Slot2-36_1_8055_diatracer.781586.781586.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nQPVLEFSLENLRc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_total_Slot2-36_1_8055_diatracer.782726.782726.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nTLNINGQIPTGEGVc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_total_Slot2-36_1_8055_diatracer.783598.783598.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nVAEKPYQSSTMLSQNSENEDc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_total_Slot2-36_1_8055_diatracer.784592.784592.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nSDFKHQPLVEALDSEGTAGPKc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_total_Slot2-36_1_8055_diatracer.784912.784912.3 [INFO:] Please specify modification and rerun PTMProphet ... ​ [INFO:] written 143000/195503 spectrum_queries [ERROR:] Cannot initialize for sequence: nRSAAEMYGSSFD[202]LD[202]YDFQRDYYDc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_total_Slot2-36_1_8055_diatracer.786059.786059.4 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nDHLSPLSSSMPFWc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_total_Slot2-36_1_8055_diatracer.787714.787714.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nGYHYIIANLVGIYc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_total_Slot2-36_1_8055_diatracer.789955.789955.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nEVETLYQC[160]c[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_total_Slot2-36_1_8055_diatracer.791251.791251.2 [INFO:] Please specify modification and rerun PTMProphet ... ​ [INFO:] written 144000/195503 spectrum_queries [ERROR:] Cannot initialize for sequence: nAFTC[160]LPVENPEAPVc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_total_Slot2-36_1_8055_diatracer.791313.791313.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nPETVAMVSAMPILMc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_total_Slot2-36_1_8055_diatracer.791981.791981.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nNELLGTASVNLSNVLc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_total_Slot2-36_1_8055_diatracer.792629.792629.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nGSQGAIPPPAKRPC[160]Mc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_total_Slot2-36_1_8055_diatracer.792955.792955.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nTGAFAYPFLFDNLPc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_total_Slot2-36_1_8055_diatracer.793177.793177.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nAPASGPERIVc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_total_Slot2-36_1_8055_diatracer.795807.795807.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nLEVHSNGSVAYFNASc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_total_Slot2-36_1_8055_diatracer.796202.796202.3 [INFO:] Please specify modification and rerun PTMProphet ... ​ [INFO:] written 145000/195503 spectrum_queries [ERROR:] Cannot initialize for sequence: nAPTSC[160]PAGRC[160]C[160]TPAc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_total_Slot2-36_1_8055_diatracer.797131.797131.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: n[43]MQPPVPGPLGLLDPAc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_total_Slot2-36_1_8055_diatracer.797298.797298.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nSVAQAWSAVAc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_total_Slot2-36_1_8055_diatracer.797818.797818.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nAGDSEAPLC[160]Sc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_total_Slot2-36_1_8055_diatracer.798640.798640.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nVSWLSLNAEc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_total_Slot2-36_1_8055_diatracer.799496.799496.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nEVLRVC[160]SSGALSQLc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_total_Slot2-36_1_8055_diatracer.800162.800162.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nYDANILTASc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_total_Slot2-36_1_8055_diatracer.801758.801758.2 [INFO:] Please specify modification and rerun PTMProphet ... ​ [INFO:] written 146000/195503 spectrum_queries [ERROR:] Cannot initialize for sequence: nSVNTITSFC[160]c[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_total_Slot2-36_1_8055_diatracer.802357.802357.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nPAGPGPGPPATPAQPQPc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_total_Slot2-36_1_8055_diatracer.803183.803183.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nSSVTSSLMYc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_total_Slot2-36_1_8055_diatracer.804226.804226.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nLDIGDPTVTFQFAVAQHAEAc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_total_Slot2-36_1_8055_diatracer.805591.805591.4 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nDHLSPLSSSMPFWc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_total_Slot2-36_1_8055_diatracer.806683.806683.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: n[43]SMGAIVVEEc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_total_Slot2-36_1_8055_diatracer.806737.806737.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nEVLRVC[160]SSGALSQLc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_total_Slot2-36_1_8055_diatracer.807269.807269.3 [INFO:] Please specify modification and rerun PTMProphet ... ​ [INFO:] written 147000/195503 spectrum_queries [ERROR:] Cannot initialize for sequence: nEEVPRYEYAGSC[160]Ic[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_total_Slot2-36_1_8055_diatracer.809678.809678.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nRQASLSQSIc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_total_Slot2-36_1_8055_diatracer.812162.812162.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nKSEYVGATNSAFEADc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_total_Slot2-36_1_8055_diatracer.812857.812857.3 [INFO:] Please specify modification and rerun PTMProphet ... ​ [INFO:] written 148000/195503 spectrum_queries [ERROR:] Cannot initialize for sequence: nDHLSPLSSSMPFWc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_total_Slot2-36_1_8055_diatracer.813814.813814.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nEVLRVC[160]SSGALSQLc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_total_Slot2-36_1_8055_diatracer.814399.814399.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nLQEVHGLVQc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_total_Slot2-36_1_8055_diatracer.816343.816343.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nHSVGGGGAAAPAGQPGGGPc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_total_Slot2-36_1_8055_diatracer.818541.818541.3 [INFO:] Please specify modification and rerun PTMProphet ... ​ [INFO:] written 149000/195503 spectrum_queries [ERROR:] Cannot initialize for sequence: nQVDELLITSDTMTNc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_total_Slot2-36_1_8055_diatracer.819701.819701.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nC[160]LRPQGPPSSDGPLDc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_total_Slot2-36_1_8055_diatracer.820071.820071.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nLDFSGGAEAVGYAGSEc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_total_Slot2-36_1_8055_diatracer.820245.820245.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nLDFSGGAEAVGYAGSEc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_total_Slot2-36_1_8055_diatracer.822622.822622.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nAVALGAALALLLSRPAGc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_total_Slot2-36_1_8055_diatracer.823621.823621.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nYGSLGLYVAEQFGDc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_total_Slot2-36_1_8055_diatracer.823819.823819.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nLFWHEDSKPGTLVc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_total_Slot2-36_1_8055_diatracer.824092.824092.3 [INFO:] Please specify modification and rerun PTMProphet ... ​ [INFO:] written 150000/195503 spectrum_queries [ERROR:] Cannot initialize for sequence: nFSC[160]LSLPSSc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_total_Slot2-36_1_8055_diatracer.824509.824509.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nILPSYRDTITPQQc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_total_Slot2-36_1_8055_diatracer.825234.825234.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nQIDELSVGSDTIDLc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_total_Slot2-36_1_8055_diatracer.825711.825711.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nTGAFAYPFLFDNLPc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_total_Slot2-36_1_8055_diatracer.826382.826382.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nFDAGVRSFSc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_total_Slot2-36_1_8055_diatracer.828611.828611.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nALGSPWGRDc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_total_Slot2-36_1_8055_diatracer.829783.829783.2 [INFO:] Please specify modification and rerun PTMProphet ... ​ [INFO:] written 151000/195503 spectrum_queries [ERROR:] Cannot initialize for sequence: nLEQGEEPWVGDGEIPSSDSc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_total_Slot2-36_1_8055_diatracer.830606.830606.4 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nMELILSTSPc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_total_Slot2-36_1_8055_diatracer.831180.831180.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nVDSYQPLNNc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_total_Slot2-36_1_8055_diatracer.834279.834279.2 [INFO:] Please specify modification and rerun PTMProphet ... ​ [INFO:] written 152000/195503 spectrum_queries [ERROR:] Cannot initialize for sequence: nYIEQATVHSSMIFc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_total_Slot2-36_1_8055_diatracer.835966.835966.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nERPAESTVEc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_total_Slot2-36_1_8055_diatracer.837519.837519.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nKTTSVC[160]AVLc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_total_Slot2-36_1_8055_diatracer.839882.839882.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nAAGASRQAQDc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_total_Slot2-36_1_8055_diatracer.839910.839910.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nPAGPGPGPPATPAQPQPc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_total_Slot2-36_1_8055_diatracer.841180.841180.3 [INFO:] Please specify modification and rerun PTMProphet ... ​ [INFO:] written 153000/195503 spectrum_queries [ERROR:] Cannot initialize for sequence: nYEDLC[160]AFYHPGVNGPPLc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_total_Slot2-36_1_8055_diatracer.845053.845053.2 [INFO:] Please specify modification and rerun PTMProphet ... ​ [INFO:] written 154000/195503 spectrum_queries [ERROR:] Cannot initialize for sequence: nFDIYTIAFGIRNVTHIDc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_total_Slot2-36_1_8055_diatracer.850542.850542.2 [INFO:] Please specify modification and rerun PTMProphet ... ​ [INFO:] written 155000/195503 spectrum_queries [ERROR:] Cannot initialize for sequence: nGPAAVSVAAAAAGAAAGAAVAAAAGAc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_total_Slot2-36_1_8055_diatracer.856456.856456.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nPPPPGILSDISFATGPGGGGGGGNGGPASGGGARQc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_total_Slot2-36_1_8055_diatracer.856685.856685.3 [INFO:] Please specify modification and rerun PTMProphet ... ​ [INFO:] written 156000/195503 spectrum_queries [ERROR:] Cannot initialize for sequence: nLQAENTALQKNVAGAc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_total_Slot2-36_1_8055_diatracer.865447.865447.2 [INFO:] Please specify modification and rerun PTMProphet ... ​ [INFO:] written 157000/195503 spectrum_queries [ERROR:] Cannot initialize for sequence: nTDAASLAPAAPPAAPPQQTEAESSc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_total_Slot2-36_1_8055_diatracer.868243.868243.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nVAGLSIGPNPC[160]HGAPYLFLLC[160]FLVMLPGc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_total_Slot2-36_1_8055_diatracer.868396.868396.4 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nSRYM[147]ELYTYPPAc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_total_Slot2-36_1_8055_diatracer.868400.868400.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nGDGDLDLNGQLLVAQc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_total_Slot2-36_1_8055_diatracer.868989.868989.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nEMLVEINGILAEAMc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_total_Slot2-36_1_8055_diatracer.869547.869547.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nSRYM[147]ELYTYPPAc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_total_Slot2-36_1_8055_diatracer.870191.870191.2 [INFO:] Please specify modification and rerun PTMProphet ... ​ [INFO:] written 158000/195503 spectrum_queries [ERROR:] Cannot initialize for sequence: nMTC[160]TVFMVGMQWc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_total_Slot2-36_1_8055_diatracer.873158.873158.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nVAAGVAGAAGGGGSIGASKc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_total_Slot2-36_1_8055_diatracer.873897.873897.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: n[43]GPEAGLLHSSDDAGGGPSDSQLPPc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_total_Slot2-36_1_8055_diatracer.874640.874640.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nENIELINTEAKESSWPGASVVc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_total_Slot2-36_1_8055_diatracer.875865.875865.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nNWVSPC[160]WPGLSGLc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_total_Slot2-36_1_8055_diatracer.876325.876325.2 [INFO:] Please specify modification and rerun PTMProphet ... ​ [INFO:] written 159000/195503 spectrum_queries [ERROR:] Cannot initialize for sequence: nGGSYSQAASSDSAQGSD[158]VSLTAC[160]c[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_total_Slot2-36_1_8055_diatracer.877951.877951.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nSAEGLRGEMHAC[160]PGc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_total_Slot2-36_1_8055_diatracer.879853.879853.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nSSAAAAAALDLSGRRGc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_total_Slot2-36_1_8055_diatracer.880199.880199.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nPAVQSC[160]AWTLQLPGc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_total_Slot2-36_1_8055_diatracer.880481.880481.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nLYDYC[160]DVPQC[160]EASWWHLc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_total_Slot2-36_1_8055_diatracer.881802.881802.3 [INFO:] Please specify modification and rerun PTMProphet ... ​ [INFO:] written 160000/195503 spectrum_queries [ERROR:] Cannot initialize for sequence: nGADC[160]VLTSGESQAWc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_total_Slot2-36_1_8055_diatracer.882421.882421.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nIQEESSSSISSEMKc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_total_Slot2-36_1_8055_diatracer.882905.882905.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nPAAAQWSELAAAAAAAc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_total_Slot2-36_1_8055_diatracer.883910.883910.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nLSSGGGGGGGGSSGGGGGGGNAc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_total_Slot2-36_1_8055_diatracer.883952.883952.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nMTC[160]TVFMVGMQWc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_total_Slot2-36_1_8055_diatracer.884555.884555.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nLQPAHLPC[160]AAWDGMASPSSHGQc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_total_Slot2-36_1_8055_diatracer.884628.884628.3 [INFO:] Please specify modification and rerun PTMProphet ... ​ [INFO:] written 161000/195503 spectrum_queries [ERROR:] Cannot initialize for sequence: nAC[160]LAKGLAAAPSPNEc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_total_Slot2-36_1_8055_diatracer.887498.887498.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nLSSGGGGGGGGSSGGGGGGGNAc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_total_Slot2-36_1_8055_diatracer.887757.887757.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nITPFTKGKC[160]PPTVDYNSDPTPc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_total_Slot2-36_1_8055_diatracer.888698.888698.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nEVGAGPAESPVRAGRGc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_total_Slot2-36_1_8055_diatracer.889484.889484.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nSLAVVVRDDLPSPPc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_total_Slot2-36_1_8055_diatracer.889622.889622.2 [INFO:] Please specify modification and rerun PTMProphet ... ​ [INFO:] written 162000/195503 spectrum_queries [ERROR:] Cannot initialize for sequence: nSRYM[147]ELYTYPPAc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_total_Slot2-36_1_8055_diatracer.895019.895019.2 [INFO:] Please specify modification and rerun PTMProphet ... ​ [INFO:] written 163000/195503 spectrum_queries [ERROR:] Cannot initialize for sequence: nGGSYSQAASSDSAQGSD[158]VSLTAC[160]c[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_total_Slot2-36_1_8055_diatracer.898878.898878.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nIENDRLATNSSDVVc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_total_Slot2-36_1_8055_diatracer.901853.901853.2 [INFO:] Please specify modification and rerun PTMProphet ... ​ [INFO:] written 164000/195503 spectrum_queries [ERROR:] Cannot initialize for sequence: nLTSHAELERc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_total_Slot2-36_1_8055_diatracer.904440.904440.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nNGPYTGPC[160]GLc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_total_Slot2-36_1_8055_diatracer.905488.905488.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: n[43]MGLGAALAGEKGTLWEc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_total_Slot2-36_1_8055_diatracer.906078.906078.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nIC[160]DGVQFGAGIRFLc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_total_Slot2-36_1_8055_diatracer.906916.906916.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nMYKTDRLGAEDQGGVc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_total_Slot2-36_1_8055_diatracer.907920.907920.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nAFTPSSNSTSQAGDM[147]ETLTFSc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_total_Slot2-36_1_8055_diatracer.908145.908145.4 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nAPTPGTASREPc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_total_Slot2-36_1_8055_diatracer.908356.908356.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nILEGDSPNGWISQDQc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_total_Slot2-36_1_8055_diatracer.908622.908622.3 [INFO:] Please specify modification and rerun PTMProphet ... ​ [INFO:] written 165000/195503 spectrum_queries [ERROR:] Cannot initialize for sequence: nEVNISVFQVc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_total_Slot2-36_1_8055_diatracer.910502.910502.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nPVDVATLWSLSQLDGc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_total_Slot2-36_1_8055_diatracer.910755.910755.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nNNIPEPVVIGc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_total_Slot2-36_1_8055_diatracer.911797.911797.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nVTMTSLPQHGc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_total_Slot2-36_1_8055_diatracer.912746.912746.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nLDELEEATKc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_total_Slot2-36_1_8055_diatracer.913765.913765.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nFQGGREVESc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_total_Slot2-36_1_8055_diatracer.914263.914263.2 [INFO:] Please specify modification and rerun PTMProphet ... ​ [INFO:] written 166000/195503 spectrum_queries [ERROR:] Cannot initialize for sequence: nELNGSDDALGVc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_total_Slot2-36_1_8055_diatracer.916181.916181.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nTINSTQLLRAWQEPc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_total_Slot2-36_1_8055_diatracer.918512.918512.3 [INFO:] Please specify modification and rerun PTMProphet ... ​ [INFO:] written 167000/195503 spectrum_queries [ERROR:] Cannot initialize for sequence: nLLEAVGSSSGTPNAPPPc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_total_Slot2-36_1_8055_diatracer.922880.922880.3 [INFO:] Please specify modification and rerun PTMProphet ... ​ [INFO:] written 168000/195503 spectrum_queries [ERROR:] Cannot initialize for sequence: nSESRSTEEGSc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_total_Slot2-36_1_8055_diatracer.927293.927293.2 [INFO:] Please specify modification and rerun PTMProphet ... ​ [INFO:] written 169000/195503 spectrum_queries [ERROR:] Cannot initialize for sequence: nSLQLQLQAPSGNTVPAc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_total_Slot2-36_1_8055_diatracer.932594.932594.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nSKSAESGGRQGc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_total_Slot2-36_1_8055_diatracer.934591.934591.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nEAPEAQMQGEc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_total_Slot2-36_1_8055_diatracer.935866.935866.2 [INFO:] Please specify modification and rerun PTMProphet ... ​ [INFO:] written 170000/195503 spectrum_queries [ERROR:] Cannot initialize for sequence: nNNIPEPVVIGc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_total_Slot2-36_1_8055_diatracer.936563.936563.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nYQAAAPSVSNc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_total_Slot2-36_1_8055_diatracer.936575.936575.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nMISLKVC[160]GFIQIWc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_total_Slot2-36_1_8055_diatracer.940244.940244.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nELNGSDDALGVc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_total_Slot2-36_1_8055_diatracer.940941.940941.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nSHLTATSVSQVSLLNVc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_total_Slot2-36_1_8055_diatracer.940998.940998.3 [INFO:] Please specify modification and rerun PTMProphet ... ​ [INFO:] written 171000/195503 spectrum_queries [ERROR:] Cannot initialize for sequence: nGEAALAPSWPPSDGNAAc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_total_Slot2-36_1_8055_diatracer.941911.941911.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nANAQAAALYKc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_total_Slot2-36_1_8055_diatracer.942325.942325.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nTEPMAWNEVGKYC[160]c[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_total_Slot2-36_1_8055_diatracer.942404.942404.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nIELVVAPAGVTc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_total_Slot2-36_1_8055_diatracer.942485.942485.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nLFQFARGTFc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_total_Slot2-36_1_8055_diatracer.943044.943044.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nEPIPIDSIKc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_total_Slot2-36_1_8055_diatracer.944137.944137.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nNNIPEPVVIGc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_total_Slot2-36_1_8055_diatracer.946466.946466.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nFDPSPAYQSc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_total_Slot2-36_1_8055_diatracer.946590.946590.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nQLQSGPGEAKc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_total_Slot2-36_1_8055_diatracer.946918.946918.2 [INFO:] Please specify modification and rerun PTMProphet ... ​ [INFO:] written 172000/195503 spectrum_queries [ERROR:] Cannot initialize for sequence: nGFLSSSSLHGHMQVHc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_total_Slot2-36_1_8055_diatracer.948669.948669.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nHGGSLEPAFPc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_total_Slot2-36_1_8055_diatracer.948858.948858.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nLAELYGASEGPAPLWc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_total_Slot2-36_1_8055_diatracer.949346.949346.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nNNSPGTAEGC[160]GGGGGGGGGGc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_total_Slot2-36_1_8055_diatracer.949861.949861.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nIELVVAPAGVTc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_total_Slot2-36_1_8055_diatracer.952380.952380.2 [INFO:] Please specify modification and rerun PTMProphet ... ​ [INFO:] written 173000/195503 spectrum_queries [ERROR:] Cannot initialize for sequence: nSGIPTSEPGSQc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_total_Slot2-36_1_8055_diatracer.954446.954446.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nVTHLADEWGFDTVTc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_total_Slot2-36_1_8055_diatracer.954966.954966.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nRGNPALVSVASGGGGAPAAc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_total_Slot2-36_1_8055_diatracer.956822.956822.3 [INFO:] Please specify modification and rerun PTMProphet ... ​ [INFO:] written 174000/195503 spectrum_queries [ERROR:] Cannot initialize for sequence: nGGGSEVITIYSc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_total_Slot2-36_1_8055_diatracer.960525.960525.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nFPDIMTC[160]HHRSC[160]Vc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_total_Slot2-36_1_8055_diatracer.960650.960650.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nGLPSSSPDASTAc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_total_Slot2-36_1_8055_diatracer.960739.960739.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nLPEASSLSNSNEGYLSLPSc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_total_Slot2-36_1_8055_diatracer.963767.963767.2 [INFO:] Please specify modification and rerun PTMProphet ... ​ [INFO:] written 176000/195503 spectrum_queries [ERROR:] Cannot initialize for sequence: nSLASQFKAPAPSTVRSGWAc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_total_Slot2-36_1_8055_diatracer.971271.971271.2 [INFO:] Please specify modification and rerun PTMProphet ... ​ [INFO:] written 177000/195503 spectrum_queries [ERROR:] Cannot initialize for sequence: nQGANEIKTEALDDDc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_total_Slot2-36_1_8055_diatracer.979184.979184.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nC[160]VNSGSLQLFLAGLHFIYRKc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_total_Slot2-36_1_8055_diatracer.980694.980694.3 [INFO:] Please specify modification and rerun PTMProphet ... ​ [INFO:] written 178000/195503 spectrum_queries [ERROR:] Cannot initialize for sequence: nEMAAVGASASAAPVTESc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_total_Slot2-36_1_8055_diatracer.981932.981932.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: n[43]AVAAAAAAAGPAGAGGGRAQRSGLLEVc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_total_Slot2-36_1_8055_diatracer.982550.982550.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nAITIAGIPQSIIE[172]C[160]c[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_total_Slot2-36_1_8055_diatracer.983099.983099.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nLQEVTWARQPVAAAc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_total_Slot2-36_1_8055_diatracer.983220.983220.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nAKAYAANSHQGQMLAc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_total_Slot2-36_1_8055_diatracer.986003.986003.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nEGPASTPMSSAAPQAPAc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_total_Slot2-36_1_8055_diatracer.986215.986215.2 [INFO:] Please specify modification and rerun PTMProphet ... ​ [INFO:] written 179000/195503 spectrum_queries [ERROR:] Cannot initialize for sequence: nGAILNISSGSGMLPVPLLTIYSATc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_total_Slot2-36_1_8055_diatracer.986388.986388.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nAAAAAAAAAAAAAAAASAGGKEAASGPNDSc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_total_Slot2-36_1_8055_diatracer.988235.988235.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nATAGEPSPHGQVSSPPc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_total_Slot2-36_1_8055_diatracer.989427.989427.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nLAATNALLNSLE[172]FTc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_total_Slot2-36_1_8055_diatracer.989843.989843.2 [INFO:] Please specify modification and rerun PTMProphet ... ​ [INFO:] written 180000/195503 spectrum_queries [ERROR:] Cannot initialize for sequence: nPNGGRGGPNRGNMSNAc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_total_Slot2-36_1_8055_diatracer.992786.992786.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nGEPGAVGQMGSPGQQGASTQGLWEc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_total_Slot2-36_1_8055_diatracer.993142.993142.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nLEAM[147]LFAIDEINKc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_total_Slot2-36_1_8055_diatracer.993236.993236.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nVDLVPPGSSTELPGASc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_total_Slot2-36_1_8055_diatracer.993244.993244.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nEDLAALEKDYEEVGTDSFEEENEGEEFc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_total_Slot2-36_1_8055_diatracer.994590.994590.4 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nAITIAGIPQSIIE[172]C[160]c[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_total_Slot2-36_1_8055_diatracer.994988.994988.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nATAGEPSPHGQVSSPPc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_total_Slot2-36_1_8055_diatracer.996365.996365.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nEGIPPDQQRLIFAGKQLEDGRc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_total_Slot2-36_1_8055_diatracer.996543.996543.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nLQEVTWARQPVAAAc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_total_Slot2-36_1_8055_diatracer.997108.997108.2 [INFO:] Please specify modification and rerun PTMProphet ... ​ [INFO:] written 181000/195503 spectrum_queries [ERROR:] Cannot initialize for sequence: nLGAAVAAAGWGRRATAAc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_total_Slot2-36_1_8055_diatracer.998524.998524.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nAITIAGIPQSIIE[172]C[160]c[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_total_Slot2-36_1_8055_diatracer.998719.998719.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nPKVSSTAHARHFTAc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_total_Slot2-36_1_8055_diatracer.999548.999548.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nAQLSPEASTEELIHc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_total_Slot2-36_1_8055_diatracer.1002013.1002013.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nTHLEWPLFVMTSHc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_total_Slot2-36_1_8055_diatracer.1002967.1002967.2 [INFO:] Please specify modification and rerun PTMProphet ... ​ [INFO:] written 182000/195503 spectrum_queries [ERROR:] Cannot initialize for sequence: nIFVSGNSNEC[160]LQNSc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_total_Slot2-36_1_8055_diatracer.1005335.1005335.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nVLDQEFGC[160]LGSNLHLPC[160]TC[160]Fc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_total_Slot2-36_1_8055_diatracer.1006161.1006161.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nATAGEPSPHGQVSSPPc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_total_Slot2-36_1_8055_diatracer.1006793.1006793.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nVQYLVEWEGTTPYc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_total_Slot2-36_1_8055_diatracer.1007716.1007716.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nSESSYSHQEAHVLAc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_total_Slot2-36_1_8055_diatracer.1007762.1007762.2 [INFO:] Please specify modification and rerun PTMProphet ... ​ [INFO:] written 183000/195503 spectrum_queries [ERROR:] Cannot initialize for sequence: nSFYPEEVSSMVLTKM[147]KEIAEc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_total_Slot2-36_1_8055_diatracer.1012364.1012364.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nNVATC[160]NYNGFDNESDPTVELYSASPTNYc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_total_Slot2-36_1_8055_diatracer.1013995.1013995.4 [INFO:] Please specify modification and rerun PTMProphet ... ​ [INFO:] written 184000/195503 spectrum_queries [ERROR:] Cannot initialize for sequence: nSTPGLLSGALVAc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_total_Slot2-36_1_8055_diatracer.1018355.1018355.2 [INFO:] Please specify modification and rerun PTMProphet ... ​ [INFO:] written 185000/195503 spectrum_queries [ERROR:] Cannot initialize for sequence: nHTSEIPRSLSc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_total_Slot2-36_1_8055_diatracer.1020898.1020898.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nWWSM[147]ATSDQVTFTDc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_total_Slot2-36_1_8055_diatracer.1022595.1022595.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nGAETETAPFWc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_total_Slot2-36_1_8055_diatracer.1024816.1024816.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nFIYMAVQHYIETLc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_total_Slot2-36_1_8055_diatracer.1024992.1024992.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nHAVAGC[160]IISLLWFFGc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_total_Slot2-36_1_8055_diatracer.1025331.1025331.3 [INFO:] Please specify modification and rerun PTMProphet ... ​ [INFO:] written 186000/195503 spectrum_queries [ERROR:] Cannot initialize for sequence: nPLSPSPPYQSEGGRGKc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_total_Slot2-36_1_8055_diatracer.1025750.1025750.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nLD[202]ENVHTDNc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_total_Slot2-36_1_8055_diatracer.1029181.1029181.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nLSSLDIDVLSKAPSDNAc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_total_Slot2-36_1_8055_diatracer.1029749.1029749.3 [INFO:] Please specify modification and rerun PTMProphet ... ​ [INFO:] written 187000/195503 spectrum_queries [ERROR:] Cannot initialize for sequence: nWAEAFGVPDVc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_total_Slot2-36_1_8055_diatracer.1031438.1031438.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nLD[202]ENVHTDNc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_total_Slot2-36_1_8055_diatracer.1031776.1031776.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nLFFLSGSPLLc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_total_Slot2-36_1_8055_diatracer.1032142.1032142.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nLVANM[147]LSVAGDc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_total_Slot2-36_1_8055_diatracer.1032534.1032534.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nSLWSPGRNSVc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_total_Slot2-36_1_8055_diatracer.1035157.1035157.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nEQFPSEPSFc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_total_Slot2-36_1_8055_diatracer.1035549.1035549.2 [INFO:] Please specify modification and rerun PTMProphet ... ​ [INFO:] written 188000/195503 spectrum_queries [ERROR:] Cannot initialize for sequence: nHTSEIPRSLSc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_total_Slot2-36_1_8055_diatracer.1036454.1036454.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nELIAKLDQAEc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_total_Slot2-36_1_8055_diatracer.1036525.1036525.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nLAGGSADTVRSPc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_total_Slot2-36_1_8055_diatracer.1036606.1036606.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nASNGQIGTQHSc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_total_Slot2-36_1_8055_diatracer.1037004.1037004.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nLQSPNLPSRSc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_total_Slot2-36_1_8055_diatracer.1037194.1037194.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nPEGLLRPTSFc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_total_Slot2-36_1_8055_diatracer.1038697.1038697.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nALGQNPTNAESc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_total_Slot2-36_1_8055_diatracer.1040316.1040316.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nDESLEFQKSc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_total_Slot2-36_1_8055_diatracer.1041403.1041403.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nFYVAPEAVALGLLGLLLPVSLLc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_total_Slot2-36_1_8055_diatracer.1042048.1042048.4 [INFO:] Please specify modification and rerun PTMProphet ... ​ [INFO:] written 189000/195503 spectrum_queries [ERROR:] Cannot initialize for sequence: nEIKDAISGIGTc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_total_Slot2-36_1_8055_diatracer.1042567.1042567.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nPGPSPAPTGYQAQIC[160]Pc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_total_Slot2-36_1_8055_diatracer.1043532.1043532.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nEYLVNITEYRASHSc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_total_Slot2-36_1_8055_diatracer.1045534.1045534.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nDTQALEPC[160]IAc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_total_Slot2-36_1_8055_diatracer.1046376.1046376.2 [INFO:] Please specify modification and rerun PTMProphet ... ​ [INFO:] written 190000/195503 spectrum_queries [ERROR:] Cannot initialize for sequence: nQEDHLSPGGQVYSQPc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_total_Slot2-36_1_8055_diatracer.1048553.1048553.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nSFTLVAQAGVQc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_total_Slot2-36_1_8055_diatracer.1049080.1049080.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nIPEAGEGQPSVc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_total_Slot2-36_1_8055_diatracer.1049470.1049470.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nDINLASFIEQVAVSMTc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_total_Slot2-36_1_8055_diatracer.1050463.1050463.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nQLDKEQC[160]YTYWSRWNANc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_total_Slot2-36_1_8055_diatracer.1052246.1052246.4 [INFO:] Please specify modification and rerun PTMProphet ... ​ [INFO:] written 191000/195503 spectrum_queries [ERROR:] Cannot initialize for sequence: nKNSQSQNYIc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_total_Slot2-36_1_8055_diatracer.1054577.1054577.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nPQTWTQVGGNc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_total_Slot2-36_1_8055_diatracer.1054848.1054848.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nLD[202]ENVHTDNc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_total_Slot2-36_1_8055_diatracer.1055128.1055128.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nHAVAGC[160]IISLLWFFGc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_total_Slot2-36_1_8055_diatracer.1056472.1056472.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nYLSISSSLLLc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_total_Slot2-36_1_8055_diatracer.1058066.1058066.2 [INFO:] Please specify modification and rerun PTMProphet ... ​ [INFO:] written 192000/195503 spectrum_queries [ERROR:] Cannot initialize for sequence: nRNQTLDEKHc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_total_Slot2-36_1_8055_diatracer.1060575.1060575.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nGLFGTAGTLLVNKGEYYEPISVc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_total_Slot2-36_1_8055_diatracer.1060666.1060666.4 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nIQSNNFSYQVFYEc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_total_Slot2-36_1_8055_diatracer.1061222.1061222.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nLAGGSADTVRSPc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_total_Slot2-36_1_8055_diatracer.1062178.1062178.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nLEMPNEDQNENNEAKC[160]LGAQc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_total_Slot2-36_1_8055_diatracer.1062731.1062731.4 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nASIDAAAAAAATSEPPQHc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_total_Slot2-36_1_8055_diatracer.1062780.1062780.3 [INFO:] Please specify modification and rerun PTMProphet ... ​ [INFO:] written 193000/195503 spectrum_queries [ERROR:] Cannot initialize for sequence: nDFLSFAEKFEAIQEETLQDAc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_total_Slot2-36_1_8055_diatracer.1065753.1065753.4 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nRYASGSSASLGGPESAVAc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_total_Slot2-36_1_8055_diatracer.1067434.1067434.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nENRIRELTANLTFSc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_total_Slot2-36_1_8055_diatracer.1067542.1067542.3 [INFO:] Please specify modification and rerun PTMProphet ... ​ [INFO:] written 194000/195503 spectrum_queries [ERROR:] Cannot initialize for sequence: nGGPAHSEGPGPPc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_total_Slot2-36_1_8055_diatracer.1071431.1071431.2 [INFO:] Please specify modification and rerun PTMProphet ... ​ [INFO:] written 195000/195503 spectrum_queries [ERROR:] Cannot initialize for sequence: nKEGENGMPTSAc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_total_Slot2-36_1_8055_diatracer.1074713.1074713.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nRGPGSGRGGAAGAAAAAAAAAAc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_total_Slot2-36_1_8055_diatracer.1075286.1075286.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nESSWPGASVVc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_total_Slot2-36_1_8055_diatracer.1076616.1076616.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nPSGTSHNALKc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_total_Slot2-36_1_8055_diatracer.1076653.1076653.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nGGQVAAAAc[105], unknown mods may exist in spectrum 20240927_SW-KF_S1_total_Slot2-36_1_8055_diatracer.1077052.1077052.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nPLSFPSPSADc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_total_Slot2-36_1_8055_diatracer.1077096.1077096.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nSKSLPTPGNSTLGPSc[61], unknown mods may exist in spectrum 20240927_SW-KF_S1_total_Slot2-36_1_8055_diatracer.1077719.1077719.4 [INFO:] Please specify modification and rerun PTMProphet ... [INFO:] done ... [INFO:] Writing file interact-20240927_SW-KF_S1_total_Slot2-36_1_8055_diatracer.mod.pep.xml ... [INFO:] done ... Process 'PTMProphet' finished, exit code: 0 [INFO:] Using statically set 15 PPM tolerance ... [INFO:] Writing file interact-20240927_SW-KF_S2_total_Slot2-39_1_8060_diatracer.pep.xml.tmp.a98044 ... [INFO:] Creating 1 threads [INFO:] Wait for threads to finish ... [INFO:] Reading file interact-20240927_SW-KF_S2_total_Slot2-39_1_8060_diatracer.pep.xml ... [ERROR:] Cannot initialize for sequence: nPSVTFGSVHPSDVLDMPVDPc[61], unknown mods may exist in spectrum 20240927_SW-KF_S2_total_Slot2-39_1_8060_diatracer.01101.01101.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nSAPTSLQEEEM[147]PMKQVQNc[61], unknown mods may exist in spectrum 20240927_SW-KF_S2_total_Slot2-39_1_8060_diatracer.01215.01215.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nELAGAGSDGGGGNELPAEATGEAc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_total_Slot2-39_1_8060_diatracer.03908.03908.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nTNGKEPELLEPIPYEFMAc[61], unknown mods may exist in spectrum 20240927_SW-KF_S2_total_Slot2-39_1_8060_diatracer.04611.04611.2 [INFO:] Please specify modification and rerun PTMProphet ... ​ [INFO:] processed 1000/199305 spectrum_queries [ERROR:] Cannot initialize for sequence: nFQGSQGPESSAQLDVGIWTc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_total_Slot2-39_1_8060_diatracer.06173.06173.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nSVLEDFFTATEGQYQPQPc[61], unknown mods may exist in spectrum 20240927_SW-KF_S2_total_Slot2-39_1_8060_diatracer.06887.06887.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nEDLISAFGTDDQTEIYFDc[61], unknown mods may exist in spectrum 20240927_SW-KF_S2_total_Slot2-39_1_8060_diatracer.07128.07128.2 [INFO:] Please specify modification and rerun PTMProphet ... ​ [INFO:] processed 3000/199305 spectrum_queries [ERROR:] Cannot initialize for sequence: nELSILSEASGISSTQSc[61], unknown mods may exist in spectrum 20240927_SW-KF_S2_total_Slot2-39_1_8060_diatracer.17011.17011.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nDEVESIFPDFFAC[160]c[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_total_Slot2-39_1_8060_diatracer.17305.17305.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nLGGETGVQTSVTEAMPc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_total_Slot2-39_1_8060_diatracer.18814.18814.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nFSPPPPGLIGPPANTSQQLMFPDGc[61], unknown mods may exist in spectrum 20240927_SW-KF_S2_total_Slot2-39_1_8060_diatracer.19240.19240.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nVQAAVGTSAAPVPSDNHc[61], unknown mods may exist in spectrum 20240927_SW-KF_S2_total_Slot2-39_1_8060_diatracer.20557.20557.2 [INFO:] Please specify modification and rerun PTMProphet ... ​ [INFO:] processed 4000/199305 spectrum_queries [ERROR:] Cannot initialize for sequence: nFSPPPPGLIGPPANTSQQLMFPDGc[61], unknown mods may exist in spectrum 20240927_SW-KF_S2_total_Slot2-39_1_8060_diatracer.22606.22606.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nQELLEALTKHFQDc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_total_Slot2-39_1_8060_diatracer.23907.23907.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nQDLPNAMNAAEITDKc[61], unknown mods may exist in spectrum 20240927_SW-KF_S2_total_Slot2-39_1_8060_diatracer.26144.26144.2 [INFO:] Please specify modification and rerun PTMProphet ... ​ [INFO:] processed 5000/199305 spectrum_queries [ERROR:] Cannot initialize for sequence: nPTASVADIIVQSGAQFc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_total_Slot2-39_1_8060_diatracer.29983.29983.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nLLM[147]AVENAQGFEGVDc[61], unknown mods may exist in spectrum 20240927_SW-KF_S2_total_Slot2-39_1_8060_diatracer.30361.30361.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nLQGLEDGAGAGPAENAASc[61], unknown mods may exist in spectrum 20240927_SW-KF_S2_total_Slot2-39_1_8060_diatracer.31067.31067.2 [INFO:] Please specify modification and rerun PTMProphet ... ​ [INFO:] processed 6000/199305 spectrum_queries [ERROR:] Cannot initialize for sequence: nQPPPAEAGAVNRTEAAc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_total_Slot2-39_1_8060_diatracer.35701.35701.2 [INFO:] Please specify modification and rerun PTMProphet ... ​ [INFO:] processed 8000/199305 spectrum_queries [ERROR:] Cannot initialize for sequence: nQPPPAEAGAVNRTEAAc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_total_Slot2-39_1_8060_diatracer.46072.46072.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nEPGAVGEALLMNDLRc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_total_Slot2-39_1_8060_diatracer.47815.47815.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nNLMGLTLNIDGFMEISEETSLTc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_total_Slot2-39_1_8060_diatracer.48153.48153.3 [INFO:] Please specify modification and rerun PTMProphet ... ​ [INFO:] processed 10000/199305 spectrum_queries [ERROR:] Cannot initialize for sequence: nSFAPSGSC[160]DC[160]LSGPLHC[160]C[160]DGTTc[61], unknown mods may exist in spectrum 20240927_SW-KF_S2_total_Slot2-39_1_8060_diatracer.54609.54609.4 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nKRPAAAQWSELAAAAAAAc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_total_Slot2-39_1_8060_diatracer.55595.55595.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nAAGAGGGAAAAMAAAAc[61], unknown mods may exist in spectrum 20240927_SW-KF_S2_total_Slot2-39_1_8060_diatracer.57065.57065.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nEQEGPEPGGGEAc[61], unknown mods may exist in spectrum 20240927_SW-KF_S2_total_Slot2-39_1_8060_diatracer.58987.58987.2 [INFO:] Please specify modification and rerun PTMProphet ... ​ [INFO:] processed 11000/199305 spectrum_queries [ERROR:] Cannot initialize for sequence: nPATTPARPC[160]TTc[61], unknown mods may exist in spectrum 20240927_SW-KF_S2_total_Slot2-39_1_8060_diatracer.60387.60387.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nQEKLITEYGVGRTPYc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_total_Slot2-39_1_8060_diatracer.60756.60756.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nYQPVYPVVGGFVM[147]AAAAc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_total_Slot2-39_1_8060_diatracer.60818.60818.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nDGLLFLYGGPLGLGLLLQLLQMc[61], unknown mods may exist in spectrum 20240927_SW-KF_S2_total_Slot2-39_1_8060_diatracer.61753.61753.4 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nVTNGSVE[172]PQGE[172]WEGAVc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_total_Slot2-39_1_8060_diatracer.62950.62950.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nFLNESGSVVQAc[61], unknown mods may exist in spectrum 20240927_SW-KF_S2_total_Slot2-39_1_8060_diatracer.64205.64205.2 [INFO:] Please specify modification and rerun PTMProphet ... ​ [INFO:] processed 12000/199305 spectrum_queries [ERROR:] Cannot initialize for sequence: nQMSSPDIPNPNSLSTANc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_total_Slot2-39_1_8060_diatracer.69365.69365.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nYGGQAQLLLVC[160]LVLVPLLTQPAc[61], unknown mods may exist in spectrum 20240927_SW-KF_S2_total_Slot2-39_1_8060_diatracer.70210.70210.4 [INFO:] Please specify modification and rerun PTMProphet ... ​ [INFO:] processed 13000/199305 spectrum_queries [ERROR:] Cannot initialize for sequence: nVQAILLPQPPVc[61], unknown mods may exist in spectrum 20240927_SW-KF_S2_total_Slot2-39_1_8060_diatracer.71067.71067.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nLPGVGSGHTWKc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_total_Slot2-39_1_8060_diatracer.71372.71372.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nEAAPQPWTGDKc[61], unknown mods may exist in spectrum 20240927_SW-KF_S2_total_Slot2-39_1_8060_diatracer.71895.71895.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nRGFLSSSSLHGHMQVHc[61], unknown mods may exist in spectrum 20240927_SW-KF_S2_total_Slot2-39_1_8060_diatracer.73170.73170.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nEAIAQLREKHLEAEAc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_total_Slot2-39_1_8060_diatracer.75139.75139.3 [INFO:] Please specify modification and rerun PTMProphet ... ​ [INFO:] processed 14000/199305 spectrum_queries [ERROR:] Cannot initialize for sequence: nSWSWPEVAVC[160]EVEGFc[61], unknown mods may exist in spectrum 20240927_SW-KF_S2_total_Slot2-39_1_8060_diatracer.76063.76063.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nNYKSSGTVVLAc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_total_Slot2-39_1_8060_diatracer.79319.79319.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nEGLLC[160]ASSPASC[160]C[160]HVIc[61], unknown mods may exist in spectrum 20240927_SW-KF_S2_total_Slot2-39_1_8060_diatracer.80468.80468.3 [INFO:] Please specify modification and rerun PTMProphet ... ​ [INFO:] processed 15000/199305 spectrum_queries [ERROR:] Cannot initialize for sequence: nLEVEANNAFDQYRDLc[61], unknown mods may exist in spectrum 20240927_SW-KF_S2_total_Slot2-39_1_8060_diatracer.81800.81800.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nM[147]AILSVRADFC[160]QAQHSIFADKc[61], unknown mods may exist in spectrum 20240927_SW-KF_S2_total_Slot2-39_1_8060_diatracer.82229.82229.4 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nETKGAGLQGLGDHLQEVPSSQC[160]Kc[61], unknown mods may exist in spectrum 20240927_SW-KF_S2_total_Slot2-39_1_8060_diatracer.82468.82468.4 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nYPKEGAHIGTHQTLHSc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_total_Slot2-39_1_8060_diatracer.82552.82552.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nWMGWKDRWGQEVISc[61], unknown mods may exist in spectrum 20240927_SW-KF_S2_total_Slot2-39_1_8060_diatracer.83711.83711.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nC[160]SLVVLAM[147]LLAFPSAMc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_total_Slot2-39_1_8060_diatracer.83971.83971.3 [INFO:] Please specify modification and rerun PTMProphet ... ​ [INFO:] processed 16000/199305 spectrum_queries [ERROR:] Cannot initialize for sequence: nISGNVNEQHEAc[61], unknown mods may exist in spectrum 20240927_SW-KF_S2_total_Slot2-39_1_8060_diatracer.87668.87668.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nATAAFSNVGTAIc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_total_Slot2-39_1_8060_diatracer.89029.89029.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nGSDGLNPWSEKPTREAc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_total_Slot2-39_1_8060_diatracer.89270.89270.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nFTNGIYHQRc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_total_Slot2-39_1_8060_diatracer.89873.89873.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nLAAGQGAGAGQGGGAGGGLGGSGAc[61], unknown mods may exist in spectrum 20240927_SW-KF_S2_total_Slot2-39_1_8060_diatracer.90711.90711.3 [INFO:] Please specify modification and rerun PTMProphet ... ​ [INFO:] processed 17000/199305 spectrum_queries [ERROR:] Cannot initialize for sequence: nGSDGLNPWSEKPTREAc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_total_Slot2-39_1_8060_diatracer.91905.91905.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nASGPGPC[160]SGGGAAAAc[61], unknown mods may exist in spectrum 20240927_SW-KF_S2_total_Slot2-39_1_8060_diatracer.92175.92175.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nVPDEVSFADADWSD[158]SDGAAAAAAAc[61], unknown mods may exist in spectrum 20240927_SW-KF_S2_total_Slot2-39_1_8060_diatracer.93446.93446.4 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nFHHPAQGLC[160]Pc[61], unknown mods may exist in spectrum 20240927_SW-KF_S2_total_Slot2-39_1_8060_diatracer.93795.93795.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nALGVGSQAATSAD[202]LIGAGQc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_total_Slot2-39_1_8060_diatracer.95662.95662.3 [INFO:] Please specify modification and rerun PTMProphet ... ​ [INFO:] processed 18000/199305 spectrum_queries [ERROR:] Cannot initialize for sequence: nSQVASSAAVAARTADLSEc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_total_Slot2-39_1_8060_diatracer.96940.96940.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nIHGGGINTLDIEPVEGRc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_total_Slot2-39_1_8060_diatracer.98314.98314.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nSSGVPC[160]AC[160]C[160]VPLRTGQc[61], unknown mods may exist in spectrum 20240927_SW-KF_S2_total_Slot2-39_1_8060_diatracer.98662.98662.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nSPLLPAASQLTAc[61], unknown mods may exist in spectrum 20240927_SW-KF_S2_total_Slot2-39_1_8060_diatracer.99421.99421.2 [INFO:] Please specify modification and rerun PTMProphet ... ​ [INFO:] processed 19000/199305 spectrum_queries [ERROR:] Cannot initialize for sequence: nALSASHTDLAHc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_total_Slot2-39_1_8060_diatracer.102210.102210.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nAPPSSSVTGAHVAc[61], unknown mods may exist in spectrum 20240927_SW-KF_S2_total_Slot2-39_1_8060_diatracer.102715.102715.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nVEGLTFQQNSLNWMKKLSPRc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_total_Slot2-39_1_8060_diatracer.103404.103404.4 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nQPPNPGPGAQQPGPPYYc[61], unknown mods may exist in spectrum 20240927_SW-KF_S2_total_Slot2-39_1_8060_diatracer.104367.104367.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nHSSDASSLLPQc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_total_Slot2-39_1_8060_diatracer.105378.105378.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nVPGASSGWGPTLAc[61], unknown mods may exist in spectrum 20240927_SW-KF_S2_total_Slot2-39_1_8060_diatracer.106196.106196.2 [INFO:] Please specify modification and rerun PTMProphet ... ​ [INFO:] processed 20000/199305 spectrum_queries [ERROR:] Cannot initialize for sequence: nENAAATFLPLSSEPSPPc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_total_Slot2-39_1_8060_diatracer.107448.107448.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nSYNLASEVTGSSNLTQNc[61], unknown mods may exist in spectrum 20240927_SW-KF_S2_total_Slot2-39_1_8060_diatracer.107849.107849.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nELLAEQDARLc[61], unknown mods may exist in spectrum 20240927_SW-KF_S2_total_Slot2-39_1_8060_diatracer.109176.109176.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nTVSQGPLLAPDGPLAQSPc[61], unknown mods may exist in spectrum 20240927_SW-KF_S2_total_Slot2-39_1_8060_diatracer.109250.109250.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nVADEVVLPRQc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_total_Slot2-39_1_8060_diatracer.110143.110143.2 [INFO:] Please specify modification and rerun PTMProphet ... ​ [INFO:] processed 21000/199305 spectrum_queries [ERROR:] Cannot initialize for sequence: nAPLASDHPAPSHHPGVATGc[61], unknown mods may exist in spectrum 20240927_SW-KF_S2_total_Slot2-39_1_8060_diatracer.114187.114187.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nAGLNGGHVc[61], unknown mods may exist in spectrum 20240927_SW-KF_S2_total_Slot2-39_1_8060_diatracer.114757.114757.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nDPPTSGSQSVGLc[61], unknown mods may exist in spectrum 20240927_SW-KF_S2_total_Slot2-39_1_8060_diatracer.114860.114860.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nPAPVGGGGGc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_total_Slot2-39_1_8060_diatracer.115116.115116.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nEPIFPSGc[61], unknown mods may exist in spectrum 20240927_SW-KF_S2_total_Slot2-39_1_8060_diatracer.115915.115915.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nM[147]INTAVKPFc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_total_Slot2-39_1_8060_diatracer.117784.117784.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nLRVSANGc[61], unknown mods may exist in spectrum 20240927_SW-KF_S2_total_Slot2-39_1_8060_diatracer.118643.118643.2 [INFO:] Please specify modification and rerun PTMProphet ... ​ [INFO:] processed 22000/199305 spectrum_queries [ERROR:] Cannot initialize for sequence: nGDGQFFAVSVVC[160]PETDPQAVc[61], unknown mods may exist in spectrum 20240927_SW-KF_S2_total_Slot2-39_1_8060_diatracer.124409.124409.2 [INFO:] Please specify modification and rerun PTMProphet ... ​ [INFO:] processed 23000/199305 spectrum_queries [ERROR:] Cannot initialize for sequence: nPIASPSEATQNIGILLDELVc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_total_Slot2-39_1_8060_diatracer.128300.128300.2 [INFO:] Please specify modification and rerun PTMProphet ... ​ [INFO:] processed 24000/199305 spectrum_queries [ERROR:] Cannot initialize for sequence: nAVLIDEVC[160]TMND[202]GPHSALYTMMc[61], unknown mods may exist in spectrum 20240927_SW-KF_S2_total_Slot2-39_1_8060_diatracer.133227.133227.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nPPSQVPHPQAPAC[160]PVAc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_total_Slot2-39_1_8060_diatracer.133313.133313.2 [INFO:] Please specify modification and rerun PTMProphet ... ​ [INFO:] processed 25000/199305 spectrum_queries [ERROR:] Cannot initialize for sequence: nGVEPNPGIPGADHYQTc[61], unknown mods may exist in spectrum 20240927_SW-KF_S2_total_Slot2-39_1_8060_diatracer.138354.138354.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nSTNPSVATFSLINGNIC[160]HERYVc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_total_Slot2-39_1_8060_diatracer.138824.138824.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nHLQAQEAPHTPGEATAc[61], unknown mods may exist in spectrum 20240927_SW-KF_S2_total_Slot2-39_1_8060_diatracer.139847.139847.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nSTNPSVATFSLINGNIC[160]HERYVc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_total_Slot2-39_1_8060_diatracer.140409.140409.3 [INFO:] Please specify modification and rerun PTMProphet ... ​ [INFO:] processed 26000/199305 spectrum_queries [ERROR:] Cannot initialize for sequence: nASIDAAAAAAATSEPPQHc[61], unknown mods may exist in spectrum 20240927_SW-KF_S2_total_Slot2-39_1_8060_diatracer.142239.142239.2 [INFO:] Please specify modification and rerun PTMProphet ... ​ [INFO:] processed 27000/199305 spectrum_queries [ERROR:] Cannot initialize for sequence: nVIVWDSFTTNKWFGc[61], unknown mods may exist in spectrum 20240927_SW-KF_S2_total_Slot2-39_1_8060_diatracer.147521.147521.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nSAAIGVFVLNRYNELc[61], unknown mods may exist in spectrum 20240927_SW-KF_S2_total_Slot2-39_1_8060_diatracer.148377.148377.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nQLVAGDIVLDKLGERc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_total_Slot2-39_1_8060_diatracer.151535.151535.2 [INFO:] Please specify modification and rerun PTMProphet ... ​ [INFO:] processed 28000/199305 spectrum_queries [ERROR:] Cannot initialize for sequence: nMQVYFDMNYTNRAc[61], unknown mods may exist in spectrum 20240927_SW-KF_S2_total_Slot2-39_1_8060_diatracer.154156.154156.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nRELQQVTAGEAASIHc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_total_Slot2-39_1_8060_diatracer.157146.157146.2 [INFO:] Please specify modification and rerun PTMProphet ... ​ [INFO:] processed 29000/199305 spectrum_queries [ERROR:] Cannot initialize for sequence: nRELQQVTAGEAASIHc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_total_Slot2-39_1_8060_diatracer.158728.158728.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nASDLLAWEQIFEVAVDEFTVSEc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_total_Slot2-39_1_8060_diatracer.161157.161157.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nTFVPASSPMYHTC[160]VAFAWLSGRc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_total_Slot2-39_1_8060_diatracer.162586.162586.3 [INFO:] Please specify modification and rerun PTMProphet ... ​ [INFO:] processed 30000/199305 spectrum_queries [ERROR:] Cannot initialize for sequence: nGGPPFAFVEFEDPRDAE[216]DAVHIc[61], unknown mods may exist in spectrum 20240927_SW-KF_S2_total_Slot2-39_1_8060_diatracer.163662.163662.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nSEAPC[160]VRVPPSVLYEDLQVSSSSEDSDSDLEc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_total_Slot2-39_1_8060_diatracer.166543.166543.4 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: n[43]VTEVTVTDSDEEVTSc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_total_Slot2-39_1_8060_diatracer.166576.166576.2 [INFO:] Please specify modification and rerun PTMProphet ... ​ [INFO:] processed 31000/199305 spectrum_queries [ERROR:] Cannot initialize for sequence: nKAVQGGGATPVVGAVQGPVPc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_total_Slot2-39_1_8060_diatracer.168867.168867.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nPLLEDPSQPEGAGAAAVAAAc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_total_Slot2-39_1_8060_diatracer.170393.170393.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nDM[147]KLVLIGHSIc[61], unknown mods may exist in spectrum 20240927_SW-KF_S2_total_Slot2-39_1_8060_diatracer.170468.170468.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nVVFGEGGEPGLMc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_total_Slot2-39_1_8060_diatracer.172548.172548.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nAAISSAAIGAGTFGc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_total_Slot2-39_1_8060_diatracer.172678.172678.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nGIC[160]PVYVLPVQLHAIGDc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_total_Slot2-39_1_8060_diatracer.173260.173260.3 [INFO:] Please specify modification and rerun PTMProphet ... ​ [INFO:] processed 32000/199305 spectrum_queries [ERROR:] Cannot initialize for sequence: nQQQEQQQAKVDENYTc[61], unknown mods may exist in spectrum 20240927_SW-KF_S2_total_Slot2-39_1_8060_diatracer.174028.174028.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nFSELPLQAEVSc[61], unknown mods may exist in spectrum 20240927_SW-KF_S2_total_Slot2-39_1_8060_diatracer.174590.174590.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nRLTLIKPELVIVNDNVc[61], unknown mods may exist in spectrum 20240927_SW-KF_S2_total_Slot2-39_1_8060_diatracer.176666.176666.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nENLIELMADIC[160]HQVQc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_total_Slot2-39_1_8060_diatracer.177308.177308.3 [INFO:] Please specify modification and rerun PTMProphet ... ​ [INFO:] processed 33000/199305 spectrum_queries [ERROR:] Cannot initialize for sequence: nAALAPLLALC[160]LLPALLPPc[61], unknown mods may exist in spectrum 20240927_SW-KF_S2_total_Slot2-39_1_8060_diatracer.178921.178921.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nRAELQPSC[160]PLc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_total_Slot2-39_1_8060_diatracer.179137.179137.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nTRGPSSPESLFSRELEc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_total_Slot2-39_1_8060_diatracer.179332.179332.3 [INFO:] Please specify modification and rerun PTMProphet ... ​ [INFO:] processed 34000/199305 spectrum_queries [ERROR:] Cannot initialize for sequence: nNSYMKLC[160]LQQITDQKc[61], unknown mods may exist in spectrum 20240927_SW-KF_S2_total_Slot2-39_1_8060_diatracer.183164.183164.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nSINNASSVSTSQc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_total_Slot2-39_1_8060_diatracer.183273.183273.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nSFQALYTANQM[147]VNVC[160]Dc[61], unknown mods may exist in spectrum 20240927_SW-KF_S2_total_Slot2-39_1_8060_diatracer.185596.185596.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nNEVVSLMQANGAGGATNLQc[61], unknown mods may exist in spectrum 20240927_SW-KF_S2_total_Slot2-39_1_8060_diatracer.185760.185760.3 [INFO:] Please specify modification and rerun PTMProphet ... ​ [INFO:] processed 35000/199305 spectrum_queries [ERROR:] Cannot initialize for sequence: nAAGVSGATVVAVGEc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_total_Slot2-39_1_8060_diatracer.190770.190770.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nDM[147]KLVLIGHSIc[61], unknown mods may exist in spectrum 20240927_SW-KF_S2_total_Slot2-39_1_8060_diatracer.191368.191368.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nFLDFITNIFAc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_total_Slot2-39_1_8060_diatracer.191565.191565.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nKAVQGGGATPVVGAVQGPVPc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_total_Slot2-39_1_8060_diatracer.192380.192380.3 [INFO:] Please specify modification and rerun PTMProphet ... ​ [INFO:] processed 36000/199305 spectrum_queries [ERROR:] Cannot initialize for sequence: nTLFAPVNSPGAAGPGVPLDc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_total_Slot2-39_1_8060_diatracer.194454.194454.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nEPPEVHTNSYc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_total_Slot2-39_1_8060_diatracer.195298.195298.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nNSC[160]VKEEDMLc[61], unknown mods may exist in spectrum 20240927_SW-KF_S2_total_Slot2-39_1_8060_diatracer.195651.195651.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nIFLMVGWINLc[61], unknown mods may exist in spectrum 20240927_SW-KF_S2_total_Slot2-39_1_8060_diatracer.197114.197114.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nLFAAAEGLDSLDc[61], unknown mods may exist in spectrum 20240927_SW-KF_S2_total_Slot2-39_1_8060_diatracer.198404.198404.2 [INFO:] Please specify modification and rerun PTMProphet ... ​ [INFO:] processed 37000/199305 spectrum_queries [ERROR:] Cannot initialize for sequence: nAALAPLLALC[160]LLPALLPPc[61], unknown mods may exist in spectrum 20240927_SW-KF_S2_total_Slot2-39_1_8060_diatracer.199812.199812.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nYTGHHAYASGC[160]TISPYc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_total_Slot2-39_1_8060_diatracer.199817.199817.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nLEDILVSMVFc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_total_Slot2-39_1_8060_diatracer.200329.200329.2 [INFO:] Please specify modification and rerun PTMProphet ... ​ [INFO:] processed 38000/199305 spectrum_queries [ERROR:] Cannot initialize for sequence: nTFPARHGGSHLc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_total_Slot2-39_1_8060_diatracer.203657.203657.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nGHPLGATGGHSC[160]Sc[61], unknown mods may exist in spectrum 20240927_SW-KF_S2_total_Slot2-39_1_8060_diatracer.203940.203940.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nLQQELMTLMNPTLIVPc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_total_Slot2-39_1_8060_diatracer.204235.204235.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nTPETQPAGHGPLGLSLPPAc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_total_Slot2-39_1_8060_diatracer.204404.204404.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nTHGTFNGQASGTAc[61], unknown mods may exist in spectrum 20240927_SW-KF_S2_total_Slot2-39_1_8060_diatracer.204488.204488.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nDVDVGSSLSSDEc[61], unknown mods may exist in spectrum 20240927_SW-KF_S2_total_Slot2-39_1_8060_diatracer.205277.205277.2 [INFO:] Please specify modification and rerun PTMProphet ... ​ [INFO:] processed 39000/199305 spectrum_queries [ERROR:] Cannot initialize for sequence: nVPVPAPC[160]EGVSAc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_total_Slot2-39_1_8060_diatracer.208583.208583.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nENVTPLPTRASc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_total_Slot2-39_1_8060_diatracer.208660.208660.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nQEASLAPYSHPc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_total_Slot2-39_1_8060_diatracer.209319.209319.2 [INFO:] Please specify modification and rerun PTMProphet ... ​ [INFO:] processed 40000/199305 spectrum_queries [ERROR:] Cannot initialize for sequence: n[43]C[160]LLVVLLLLWINVLKc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_total_Slot2-39_1_8060_diatracer.215039.215039.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nNMVVRAC[160]GC[160]Hc[61], unknown mods may exist in spectrum 20240927_SW-KF_S2_total_Slot2-39_1_8060_diatracer.215274.215274.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nQEGHASPC[160]PPLQPVSVMc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_total_Slot2-39_1_8060_diatracer.216964.216964.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nIISDMWGVLAKc[61], unknown mods may exist in spectrum 20240927_SW-KF_S2_total_Slot2-39_1_8060_diatracer.217062.217062.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nDLAMFLWWSc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_total_Slot2-39_1_8060_diatracer.218268.218268.2 [INFO:] Please specify modification and rerun PTMProphet ... ​ [INFO:] processed 41000/199305 spectrum_queries [ERROR:] Cannot initialize for sequence: nC[160]WAWGTSITNc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_total_Slot2-39_1_8060_diatracer.219859.219859.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nQLSDGQPPPPAQc[61], unknown mods may exist in spectrum 20240927_SW-KF_S2_total_Slot2-39_1_8060_diatracer.222082.222082.2 [INFO:] Please specify modification and rerun PTMProphet ... ​ [INFO:] processed 42000/199305 spectrum_queries [ERROR:] Cannot initialize for sequence: nSSVQFIFHEDc[61], unknown mods may exist in spectrum 20240927_SW-KF_S2_total_Slot2-39_1_8060_diatracer.223536.223536.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nESLIGYRPTEDSKEFSc[61], unknown mods may exist in spectrum 20240927_SW-KF_S2_total_Slot2-39_1_8060_diatracer.224574.224574.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nVVFGEGGEPGLMc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_total_Slot2-39_1_8060_diatracer.224775.224775.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: n[43]GGSNLPTLLNSSc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_total_Slot2-39_1_8060_diatracer.225518.225518.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nFLTAFLVQISAc[61], unknown mods may exist in spectrum 20240927_SW-KF_S2_total_Slot2-39_1_8060_diatracer.226397.226397.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nENVTPLPTRASc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_total_Slot2-39_1_8060_diatracer.226937.226937.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nTHAGGKASc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_total_Slot2-39_1_8060_diatracer.228380.228380.2 [INFO:] Please specify modification and rerun PTMProphet ... ​ [INFO:] processed 43000/199305 spectrum_queries [ERROR:] Cannot initialize for sequence: nTKGARAHVFPAc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_total_Slot2-39_1_8060_diatracer.228996.228996.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nRVVQHSNVVIc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_total_Slot2-39_1_8060_diatracer.230027.230027.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nPVIGALGLc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_total_Slot2-39_1_8060_diatracer.230978.230978.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nEKPRVLPPSLc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_total_Slot2-39_1_8060_diatracer.231769.231769.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nALHSAGIDSGFIIFGAc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_total_Slot2-39_1_8060_diatracer.233958.233958.4 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nLQTQLSWGRAVAPSc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_total_Slot2-39_1_8060_diatracer.235517.235517.4 [INFO:] Please specify modification and rerun PTMProphet ... ​ [INFO:] processed 44000/199305 spectrum_queries [ERROR:] Cannot initialize for sequence: nAAPGELRc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_total_Slot2-39_1_8060_diatracer.236470.236470.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nPRGVSQAPLLLc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_total_Slot2-39_1_8060_diatracer.237200.237200.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nENISLGGIHSSGc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_total_Slot2-39_1_8060_diatracer.237371.237371.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nADAPVALVc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_total_Slot2-39_1_8060_diatracer.237379.237379.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nGPSGAGARGc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_total_Slot2-39_1_8060_diatracer.238493.238493.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nLDVNIKSTERc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_total_Slot2-39_1_8060_diatracer.238809.238809.3 [INFO:] Please specify modification and rerun PTMProphet ... ​ [INFO:] processed 46000/199305 spectrum_queries [ERROR:] Cannot initialize for sequence: nLEDFYAGPQNAGLQRc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_total_Slot2-39_1_8060_diatracer.250113.250113.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nLEDFYAGPQNAGLQRc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_total_Slot2-39_1_8060_diatracer.251598.251598.2 [INFO:] Please specify modification and rerun PTMProphet ... ​ [INFO:] processed 47000/199305 spectrum_queries [ERROR:] Cannot initialize for sequence: nLEDFYAGPQNAGLQRc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_total_Slot2-39_1_8060_diatracer.256069.256069.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nISQFFSQAGTQSLHSC[160]YKGKPTPc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_total_Slot2-39_1_8060_diatracer.257572.257572.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nLAQQQAALLMQQE[216]Ec[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_total_Slot2-39_1_8060_diatracer.257794.257794.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nC[160]IQLSTGGATRWAYEc[61], unknown mods may exist in spectrum 20240927_SW-KF_S2_total_Slot2-39_1_8060_diatracer.260151.260151.2 [INFO:] Please specify modification and rerun PTMProphet ... ​ [INFO:] processed 48000/199305 spectrum_queries [ERROR:] Cannot initialize for sequence: nQQALQSQNSSTIC[160]SVSc[61], unknown mods may exist in spectrum 20240927_SW-KF_S2_total_Slot2-39_1_8060_diatracer.265472.265472.2 [INFO:] Please specify modification and rerun PTMProphet ... ​ [INFO:] processed 49000/199305 spectrum_queries [ERROR:] Cannot initialize for sequence: nLQQAIAM[147]HSQFHAPLc[61], unknown mods may exist in spectrum 20240927_SW-KF_S2_total_Slot2-39_1_8060_diatracer.267585.267585.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nRSALQSINEWAAQTTDGKLPE[172]VTc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_total_Slot2-39_1_8060_diatracer.267859.267859.3 [INFO:] Please specify modification and rerun PTMProphet ... ​ [INFO:] processed 50000/199305 spectrum_queries [ERROR:] Cannot initialize for sequence: nPVAPSGTALSTTSSFGSSNTGSVFGQAAc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_total_Slot2-39_1_8060_diatracer.273012.273012.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nTPGGTAEGVVSLKDESIDNKPDLEKc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_total_Slot2-39_1_8060_diatracer.273239.273239.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nKTPPEGDNFFGFIEDIDSAQSGTSAc[61], unknown mods may exist in spectrum 20240927_SW-KF_S2_total_Slot2-39_1_8060_diatracer.274518.274518.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nMVTEVTVTDSDEEVTSc[61], unknown mods may exist in spectrum 20240927_SW-KF_S2_total_Slot2-39_1_8060_diatracer.275997.275997.2 [INFO:] Please specify modification and rerun PTMProphet ... ​ [INFO:] processed 51000/199305 spectrum_queries [ERROR:] Cannot initialize for sequence: nAGEGTYALD[202]SESC[160]MEc[61], unknown mods may exist in spectrum 20240927_SW-KF_S2_total_Slot2-39_1_8060_diatracer.279245.279245.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nVTLLDASEYEC[160]E[172]VEc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_total_Slot2-39_1_8060_diatracer.280436.280436.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nTEWDLSVISNYNELc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_total_Slot2-39_1_8060_diatracer.282886.282886.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nLAQQQAALLMQQE[216]Ec[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_total_Slot2-39_1_8060_diatracer.283133.283133.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nLEPYNTFGILIFEAALSHNERAc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_total_Slot2-39_1_8060_diatracer.284036.284036.4 [INFO:] Please specify modification and rerun PTMProphet ... ​ [INFO:] processed 52000/199305 spectrum_queries [ERROR:] Cannot initialize for sequence: nVQEILLPQPPEc[61], unknown mods may exist in spectrum 20240927_SW-KF_S2_total_Slot2-39_1_8060_diatracer.284490.284490.2 [INFO:] Please specify modification and rerun PTMProphet ... ​ [INFO:] processed 53000/199305 spectrum_queries [ERROR:] Cannot initialize for sequence: nLSNQPGLRTASGRWAQKc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_total_Slot2-39_1_8060_diatracer.289469.289469.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nDHVYGIHNPVMTSPSQHc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_total_Slot2-39_1_8060_diatracer.290738.290738.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nEC[160]PLSQSMISSIVNSTYc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_total_Slot2-39_1_8060_diatracer.290798.290798.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nQAVPNGGRFNFc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_total_Slot2-39_1_8060_diatracer.293956.293956.2 [INFO:] Please specify modification and rerun PTMProphet ... ​ [INFO:] processed 54000/199305 spectrum_queries [ERROR:] Cannot initialize for sequence: nQEIRAC[160]HGKMEGITTFc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_total_Slot2-39_1_8060_diatracer.294958.294958.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: n[43]MGLPSSSPDASTAc[61], unknown mods may exist in spectrum 20240927_SW-KF_S2_total_Slot2-39_1_8060_diatracer.296869.296869.2 [INFO:] Please specify modification and rerun PTMProphet ... ​ [INFO:] processed 55000/199305 spectrum_queries [ERROR:] Cannot initialize for sequence: nVQEILLPQPPEc[61], unknown mods may exist in spectrum 20240927_SW-KF_S2_total_Slot2-39_1_8060_diatracer.299779.299779.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nYWSPAQSGLAGGPGPAGC[160]ASAc[61], unknown mods may exist in spectrum 20240927_SW-KF_S2_total_Slot2-39_1_8060_diatracer.301062.301062.3 [INFO:] Please specify modification and rerun PTMProphet ... ​ [INFO:] processed 56000/199305 spectrum_queries [ERROR:] Cannot initialize for sequence: nADASEVHRDSEc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_total_Slot2-39_1_8060_diatracer.304551.304551.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nLAAC[160]RGRVPFYVVTYPPc[61], unknown mods may exist in spectrum 20240927_SW-KF_S2_total_Slot2-39_1_8060_diatracer.306468.306468.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nAVQLTQAM[147]DTSTVGVLLAAc[61], unknown mods may exist in spectrum 20240927_SW-KF_S2_total_Slot2-39_1_8060_diatracer.307050.307050.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nIDEEDANSSVHc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_total_Slot2-39_1_8060_diatracer.307137.307137.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nSLIASGLYGYNATLVGVLMc[61], unknown mods may exist in spectrum 20240927_SW-KF_S2_total_Slot2-39_1_8060_diatracer.308188.308188.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nPRDLDLAGLQGSc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_total_Slot2-39_1_8060_diatracer.308203.308203.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nEMTFHQC[160]PC[160]LTELC[160]Qc[61], unknown mods may exist in spectrum 20240927_SW-KF_S2_total_Slot2-39_1_8060_diatracer.308648.308648.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nLVGPDFFGC[160]AEPANTFLc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_total_Slot2-39_1_8060_diatracer.309327.309327.3 [INFO:] Please specify modification and rerun PTMProphet ... ​ [INFO:] processed 57000/199305 spectrum_queries [ERROR:] Cannot initialize for sequence: nLPFSRLIPFPILGDC[160]LSSPNYWc[61], unknown mods may exist in spectrum 20240927_SW-KF_S2_total_Slot2-39_1_8060_diatracer.310623.310623.4 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nVSLSNALSSPTSLPPAAAGQGc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_total_Slot2-39_1_8060_diatracer.311674.311674.3 [INFO:] Please specify modification and rerun PTMProphet ... ​ [INFO:] processed 58000/199305 spectrum_queries [ERROR:] Cannot initialize for sequence: nPLASAFEESC[160]Rc[61], unknown mods may exist in spectrum 20240927_SW-KF_S2_total_Slot2-39_1_8060_diatracer.315294.315294.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nSMASSETQLGNHDVDPEIc[61], unknown mods may exist in spectrum 20240927_SW-KF_S2_total_Slot2-39_1_8060_diatracer.315322.315322.3 [INFO:] Please specify modification and rerun PTMProphet ... ​ [INFO:] processed 59000/199305 spectrum_queries [ERROR:] Cannot initialize for sequence: nFSSHVLTEDLDc[61], unknown mods may exist in spectrum 20240927_SW-KF_S2_total_Slot2-39_1_8060_diatracer.319870.319870.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nPGQPETSAALKEc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_total_Slot2-39_1_8060_diatracer.320662.320662.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nSLIASGLYGYNATLVGVLMc[61], unknown mods may exist in spectrum 20240927_SW-KF_S2_total_Slot2-39_1_8060_diatracer.321302.321302.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nVQEILLPQPPEc[61], unknown mods may exist in spectrum 20240927_SW-KF_S2_total_Slot2-39_1_8060_diatracer.322748.322748.2 [INFO:] Please specify modification and rerun PTMProphet ... ​ [INFO:] processed 60000/199305 spectrum_queries [ERROR:] Cannot initialize for sequence: nLLPVAYLLMEVKGHGMLSc[61], unknown mods may exist in spectrum 20240927_SW-KF_S2_total_Slot2-39_1_8060_diatracer.324389.324389.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nLPHYFPVDPPSGPRSQLc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_total_Slot2-39_1_8060_diatracer.326337.326337.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nNLQEGQVTDPRGIPLPPQc[61], unknown mods may exist in spectrum 20240927_SW-KF_S2_total_Slot2-39_1_8060_diatracer.326642.326642.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nSLPRSFAEAHVc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_total_Slot2-39_1_8060_diatracer.327087.327087.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nEWTPAQPFPHc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_total_Slot2-39_1_8060_diatracer.327201.327201.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nQQLLSHGDTKPc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_total_Slot2-39_1_8060_diatracer.327936.327936.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nRSALQSINEWAAQTTD[158]GKLPEVTc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_total_Slot2-39_1_8060_diatracer.328867.328867.4 [INFO:] Please specify modification and rerun PTMProphet ... ​ [INFO:] processed 61000/199305 spectrum_queries [ERROR:] Cannot initialize for sequence: nTSIAPFVALLC[160]TLVFLLc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_total_Slot2-39_1_8060_diatracer.330779.330779.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nPSSIADLVFTYc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_total_Slot2-39_1_8060_diatracer.332341.332341.2 [INFO:] Please specify modification and rerun PTMProphet ... ​ [INFO:] processed 62000/199305 spectrum_queries [ERROR:] Cannot initialize for sequence: nNQVVGC[160]QSLPWc[61], unknown mods may exist in spectrum 20240927_SW-KF_S2_total_Slot2-39_1_8060_diatracer.334330.334330.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: n[43]MQRLM[147]MLLATSGAC[160]LGLc[61], unknown mods may exist in spectrum 20240927_SW-KF_S2_total_Slot2-39_1_8060_diatracer.335653.335653.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nSQLRSSSVSSVSGGNKDASAc[61], unknown mods may exist in spectrum 20240927_SW-KF_S2_total_Slot2-39_1_8060_diatracer.335788.335788.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nLQEVLKRAQAISATNNSAc[61], unknown mods may exist in spectrum 20240927_SW-KF_S2_total_Slot2-39_1_8060_diatracer.337960.337960.3 [INFO:] Please specify modification and rerun PTMProphet ... ​ [INFO:] processed 63000/199305 spectrum_queries [ERROR:] Cannot initialize for sequence: n[43]MATSADSPSSPLGc[61], unknown mods may exist in spectrum 20240927_SW-KF_S2_total_Slot2-39_1_8060_diatracer.340331.340331.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nLSQTEAAAc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_total_Slot2-39_1_8060_diatracer.343748.343748.2 [INFO:] Please specify modification and rerun PTMProphet ... ​ [INFO:] processed 64000/199305 spectrum_queries [ERROR:] Cannot initialize for sequence: nGPVVSLWPAPGKc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_total_Slot2-39_1_8060_diatracer.346984.346984.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nPAAKPAAAGAc[61], unknown mods may exist in spectrum 20240927_SW-KF_S2_total_Slot2-39_1_8060_diatracer.347145.347145.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nETPDLPPSGVEKc[61], unknown mods may exist in spectrum 20240927_SW-KF_S2_total_Slot2-39_1_8060_diatracer.347261.347261.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nTQGSLGSHc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_total_Slot2-39_1_8060_diatracer.347266.347266.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nQQAASKEELEVc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_total_Slot2-39_1_8060_diatracer.347284.347284.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nWVTTFVSc[61], unknown mods may exist in spectrum 20240927_SW-KF_S2_total_Slot2-39_1_8060_diatracer.349213.349213.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nGVIEEPKc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_total_Slot2-39_1_8060_diatracer.349598.349598.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nWTSVVMAc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_total_Slot2-39_1_8060_diatracer.349900.349900.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nLARPGPAEc[61], unknown mods may exist in spectrum 20240927_SW-KF_S2_total_Slot2-39_1_8060_diatracer.350339.350339.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nNAVLGGQATc[61], unknown mods may exist in spectrum 20240927_SW-KF_S2_total_Slot2-39_1_8060_diatracer.350733.350733.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nQGAGAPTAPc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_total_Slot2-39_1_8060_diatracer.351197.351197.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nVVGPGSAPGATGAGAAc[61], unknown mods may exist in spectrum 20240927_SW-KF_S2_total_Slot2-39_1_8060_diatracer.351284.351284.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nSLGSVAPAAc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_total_Slot2-39_1_8060_diatracer.352247.352247.2 [INFO:] Please specify modification and rerun PTMProphet ... ​ [INFO:] processed 65000/199305 spectrum_queries [ERROR:] Cannot initialize for sequence: nGPHAGNVSGc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_total_Slot2-39_1_8060_diatracer.353457.353457.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nEHAVAISLSHTSc[61], unknown mods may exist in spectrum 20240927_SW-KF_S2_total_Slot2-39_1_8060_diatracer.353973.353973.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nGGPDGLHDLDNNc[61], unknown mods may exist in spectrum 20240927_SW-KF_S2_total_Slot2-39_1_8060_diatracer.354578.354578.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nSSGSGGGRTc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_total_Slot2-39_1_8060_diatracer.354684.354684.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nVVGPGSAPGATGAGAAc[61], unknown mods may exist in spectrum 20240927_SW-KF_S2_total_Slot2-39_1_8060_diatracer.354775.354775.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nQTAATLSSGWAAAc[61], unknown mods may exist in spectrum 20240927_SW-KF_S2_total_Slot2-39_1_8060_diatracer.355618.355618.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nPADERSQc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_total_Slot2-39_1_8060_diatracer.356293.356293.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nGVIEEPKc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_total_Slot2-39_1_8060_diatracer.357310.357310.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nAREELDLTVGNc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_total_Slot2-39_1_8060_diatracer.357591.357591.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nPAASPSPIGc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_total_Slot2-39_1_8060_diatracer.357866.357866.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nLQGAYSNGc[61], unknown mods may exist in spectrum 20240927_SW-KF_S2_total_Slot2-39_1_8060_diatracer.358197.358197.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nWLGLQGPSGGPGVc[61], unknown mods may exist in spectrum 20240927_SW-KF_S2_total_Slot2-39_1_8060_diatracer.359026.359026.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nPPGPGQGSAc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_total_Slot2-39_1_8060_diatracer.359947.359947.2 [INFO:] Please specify modification and rerun PTMProphet ... ​ [INFO:] processed 66000/199305 spectrum_queries [ERROR:] Cannot initialize for sequence: nLWALSLAHARSc[61], unknown mods may exist in spectrum 20240927_SW-KF_S2_total_Slot2-39_1_8060_diatracer.360767.360767.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nLPAPDEAIc[61], unknown mods may exist in spectrum 20240927_SW-KF_S2_total_Slot2-39_1_8060_diatracer.361077.361077.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nWLGLQGPSGGPGVc[61], unknown mods may exist in spectrum 20240927_SW-KF_S2_total_Slot2-39_1_8060_diatracer.361631.361631.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nASATSLWGMPWQHVAASREPc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_total_Slot2-39_1_8060_diatracer.365117.365117.2 [INFO:] Please specify modification and rerun PTMProphet ... ​ [INFO:] processed 67000/199305 spectrum_queries [ERROR:] Cannot initialize for sequence: nASATSLWGMPWQHVAASREPc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_total_Slot2-39_1_8060_diatracer.368026.368026.2 [INFO:] Please specify modification and rerun PTMProphet ... ​ [INFO:] processed 68000/199305 spectrum_queries [ERROR:] Cannot initialize for sequence: nLDSWEEHIFSAFGNFc[61], unknown mods may exist in spectrum 20240927_SW-KF_S2_total_Slot2-39_1_8060_diatracer.373254.373254.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nAASSSPDSPc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_total_Slot2-39_1_8060_diatracer.375071.375071.1 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nTTGIVMDSGDGVTHTVPIc[61], unknown mods may exist in spectrum 20240927_SW-KF_S2_total_Slot2-39_1_8060_diatracer.375914.375914.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nKEVKYFAESDEEEDDVDFAMFNc[61], unknown mods may exist in spectrum 20240927_SW-KF_S2_total_Slot2-39_1_8060_diatracer.378649.378649.3 [INFO:] Please specify modification and rerun PTMProphet ... ​ [INFO:] processed 69000/199305 spectrum_queries [ERROR:] Cannot initialize for sequence: nVETFAVTFNTLDAIESc[61], unknown mods may exist in spectrum 20240927_SW-KF_S2_total_Slot2-39_1_8060_diatracer.379982.379982.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nLPNGRDTPALFNFTTQc[61], unknown mods may exist in spectrum 20240927_SW-KF_S2_total_Slot2-39_1_8060_diatracer.380952.380952.2 [INFO:] Please specify modification and rerun PTMProphet ... ​ [INFO:] processed 70000/199305 spectrum_queries [ERROR:] Cannot initialize for sequence: nDLFSYTGSAHTRQGTEc[61], unknown mods may exist in spectrum 20240927_SW-KF_S2_total_Slot2-39_1_8060_diatracer.386752.386752.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nASVPSLEC[160]LAGPEPGAATLC[160]SSMLAFIAIVYHSTc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_total_Slot2-39_1_8060_diatracer.389107.389107.4 [INFO:] Please specify modification and rerun PTMProphet ... ​ [INFO:] processed 71000/199305 spectrum_queries [ERROR:] Cannot initialize for sequence: n[43]MSVGVSTSAPLSPTSGTSVGMSTFSIMc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_total_Slot2-39_1_8060_diatracer.392607.392607.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nGIQVWTNAKEC[160]FSKMc[61], unknown mods may exist in spectrum 20240927_SW-KF_S2_total_Slot2-39_1_8060_diatracer.393996.393996.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nLASLMNLGMSSSLNQQGAHSALSSASTc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_total_Slot2-39_1_8060_diatracer.395166.395166.3 [INFO:] Please specify modification and rerun PTMProphet ... ​ [INFO:] processed 72000/199305 spectrum_queries [ERROR:] Cannot initialize for sequence: nMEKTLQQMEEVVGSVc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_total_Slot2-39_1_8060_diatracer.399255.399255.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nPESQPAMEPQGVSFGLSSLAELTERc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_total_Slot2-39_1_8060_diatracer.400330.400330.3 [INFO:] Please specify modification and rerun PTMProphet ... ​ [INFO:] processed 73000/199305 spectrum_queries [ERROR:] Cannot initialize for sequence: n[43]MESTVDDEAPAVc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_total_Slot2-39_1_8060_diatracer.402712.402712.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nDQGAAGLIDFASPLSPGTC[160]Ac[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_total_Slot2-39_1_8060_diatracer.403494.403494.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nNQGGTHTGSASEGHc[61], unknown mods may exist in spectrum 20240927_SW-KF_S2_total_Slot2-39_1_8060_diatracer.404864.404864.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nLELNVPFEVPSPc[61], unknown mods may exist in spectrum 20240927_SW-KF_S2_total_Slot2-39_1_8060_diatracer.405012.405012.2 [INFO:] Please specify modification and rerun PTMProphet ... ​ [INFO:] processed 74000/199305 spectrum_queries [ERROR:] Cannot initialize for sequence: nVGSSAVTTLGDPAKc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_total_Slot2-39_1_8060_diatracer.407592.407592.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nEEIINSLQLQNc[61], unknown mods may exist in spectrum 20240927_SW-KF_S2_total_Slot2-39_1_8060_diatracer.408030.408030.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nLGGDLLRALNEIc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_total_Slot2-39_1_8060_diatracer.409242.409242.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nQAGTLM[147]VLLLTPLLVLVVSc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_total_Slot2-39_1_8060_diatracer.410221.410221.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nSNSFSLDIIIALGIPHNTQAHFNHc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_total_Slot2-39_1_8060_diatracer.411481.411481.4 [INFO:] Please specify modification and rerun PTMProphet ... ​ [INFO:] processed 75000/199305 spectrum_queries [ERROR:] Cannot initialize for sequence: nMYIPGPDLHNESSLYYSc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_total_Slot2-39_1_8060_diatracer.412192.412192.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nNLLLDLLSTWTVPEQIHc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_total_Slot2-39_1_8060_diatracer.412419.412419.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nNDAC[160]QIAAAGQPGc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_total_Slot2-39_1_8060_diatracer.413463.413463.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nE[172]GNVPNIIIAGHc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_total_Slot2-39_1_8060_diatracer.413797.413797.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nTIQQLETVLGEPLQSYFc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_total_Slot2-39_1_8060_diatracer.414081.414081.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nMLM[147]ELSAGAANFTDQKEFc[61], unknown mods may exist in spectrum 20240927_SW-KF_S2_total_Slot2-39_1_8060_diatracer.414228.414228.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nAAPSPGSVQPSGPWNGARGSPc[61], unknown mods may exist in spectrum 20240927_SW-KF_S2_total_Slot2-39_1_8060_diatracer.415130.415130.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nAQNTENHDPVGSILIQGFc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_total_Slot2-39_1_8060_diatracer.415164.415164.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nVSSAAPM[147]SDVEVVc[61], unknown mods may exist in spectrum 20240927_SW-KF_S2_total_Slot2-39_1_8060_diatracer.415199.415199.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nKNLISESQDLLLGC[160]VMLc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_total_Slot2-39_1_8060_diatracer.415396.415396.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nFSIAFSIVGMFASHAVGSLSVFFC[160]Ac[61], unknown mods may exist in spectrum 20240927_SW-KF_S2_total_Slot2-39_1_8060_diatracer.415476.415476.4 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nNIDHLDLSLVYDKSGVYc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_total_Slot2-39_1_8060_diatracer.415760.415760.3 [INFO:] Please specify modification and rerun PTMProphet ... ​ [INFO:] processed 76000/199305 spectrum_queries [ERROR:] Cannot initialize for sequence: nLPSALTATAC[160]KSVQVNGAATHC[160]PGKNc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_total_Slot2-39_1_8060_diatracer.418938.418938.4 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nDLC[160]AIWEASSSSHAAHAAVc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_total_Slot2-39_1_8060_diatracer.419401.419401.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nGSWGFTSM[147]TVIAFNGGVSPc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_total_Slot2-39_1_8060_diatracer.420002.420002.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nDSFGLLIFGTFSSGNKQDc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_total_Slot2-39_1_8060_diatracer.420047.420047.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nPPSAAGPAGWAAQGSc[61], unknown mods may exist in spectrum 20240927_SW-KF_S2_total_Slot2-39_1_8060_diatracer.421185.421185.2 [INFO:] Please specify modification and rerun PTMProphet ... ​ [INFO:] processed 77000/199305 spectrum_queries [ERROR:] Cannot initialize for sequence: nLEDSLQYNNTRLELLQAc[61], unknown mods may exist in spectrum 20240927_SW-KF_S2_total_Slot2-39_1_8060_diatracer.421611.421611.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nDQGAAGLIDFASPLSPGTC[160]Ac[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_total_Slot2-39_1_8060_diatracer.422924.422924.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nGPGAAQTPTVPTAIc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_total_Slot2-39_1_8060_diatracer.423590.423590.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nTTTFMLVGIC[160]LSIQSYYc[61], unknown mods may exist in spectrum 20240927_SW-KF_S2_total_Slot2-39_1_8060_diatracer.425945.425945.3 [INFO:] Please specify modification and rerun PTMProphet ... ​ [INFO:] processed 78000/199305 spectrum_queries [ERROR:] Cannot initialize for sequence: nINDNC[160]NEEM[147]SYSVEKLFWGSYLc[61], unknown mods may exist in spectrum 20240927_SW-KF_S2_total_Slot2-39_1_8060_diatracer.426580.426580.4 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nAAIEETLLLESSc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_total_Slot2-39_1_8060_diatracer.428312.428312.2 [INFO:] Please specify modification and rerun PTMProphet ... ​ [INFO:] processed 79000/199305 spectrum_queries [ERROR:] Cannot initialize for sequence: n[43]ASAC[160]GAPGPGGALGSQAPSWYc[61], unknown mods may exist in spectrum 20240927_SW-KF_S2_total_Slot2-39_1_8060_diatracer.432974.432974.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nEAAC[160]ISPVHPKHHSALFTc[61], unknown mods may exist in spectrum 20240927_SW-KF_S2_total_Slot2-39_1_8060_diatracer.433107.433107.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nLNEQEGVPSVFNPPPSRPc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_total_Slot2-39_1_8060_diatracer.433514.433514.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nLLGALYGIRAHEWMFPVc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_total_Slot2-39_1_8060_diatracer.433589.433589.3 [INFO:] Please specify modification and rerun PTMProphet ... ​ [INFO:] processed 80000/199305 spectrum_queries [ERROR:] Cannot initialize for sequence: nLGGDLLRALNEIc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_total_Slot2-39_1_8060_diatracer.438396.438396.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nGQGTAATAQMVNMc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_total_Slot2-39_1_8060_diatracer.440542.440542.2 [INFO:] Please specify modification and rerun PTMProphet ... ​ [INFO:] processed 81000/199305 spectrum_queries [ERROR:] Cannot initialize for sequence: nPHVSPGPPC[160]IGTGSFATTRc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_total_Slot2-39_1_8060_diatracer.442469.442469.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nEKTTAEYQVLVEGVPSPRc[61], unknown mods may exist in spectrum 20240927_SW-KF_S2_total_Slot2-39_1_8060_diatracer.442769.442769.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nYSVIDDLIFFASKKC[160]Hc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_total_Slot2-39_1_8060_diatracer.444808.444808.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nELIPSLC[160]LPEKc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_total_Slot2-39_1_8060_diatracer.446342.446342.2 [INFO:] Please specify modification and rerun PTMProphet ... ​ [INFO:] processed 82000/199305 spectrum_queries [ERROR:] Cannot initialize for sequence: nDLSFNPIITVLE[216]KEALFEVEAADc[61], unknown mods may exist in spectrum 20240927_SW-KF_S2_total_Slot2-39_1_8060_diatracer.446933.446933.4 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nC[160]NTLSSPNQYQc[61], unknown mods may exist in spectrum 20240927_SW-KF_S2_total_Slot2-39_1_8060_diatracer.447212.447212.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nYEDLC[160]AFYHPGVNGPPLc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_total_Slot2-39_1_8060_diatracer.447265.447265.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nRSPVAAQGTETAAAc[61], unknown mods may exist in spectrum 20240927_SW-KF_S2_total_Slot2-39_1_8060_diatracer.448003.448003.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nILDTIDIVRDAVAPGEYKc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_total_Slot2-39_1_8060_diatracer.448780.448780.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nSQDLMINSSQFc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_total_Slot2-39_1_8060_diatracer.449610.449610.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nWNNITEEPC[160]FWFISC[160]c[61], unknown mods may exist in spectrum 20240927_SW-KF_S2_total_Slot2-39_1_8060_diatracer.449998.449998.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nSELHIENLNMEc[61], unknown mods may exist in spectrum 20240927_SW-KF_S2_total_Slot2-39_1_8060_diatracer.450453.450453.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nFSVPVQHFC[160]GGNPSTPIQc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_total_Slot2-39_1_8060_diatracer.450522.450522.3 [INFO:] Please specify modification and rerun PTMProphet ... ​ [INFO:] processed 83000/199305 spectrum_queries [ERROR:] Cannot initialize for sequence: nDSVLSVC[160]NMVHc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_total_Slot2-39_1_8060_diatracer.451635.451635.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nGEPGIPGTKGDPGAEGKPGPPGc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_total_Slot2-39_1_8060_diatracer.452819.452819.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nPQEEIIATIYNc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_total_Slot2-39_1_8060_diatracer.453354.453354.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nAGMFVMALASSISc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_total_Slot2-39_1_8060_diatracer.455309.455309.2 [INFO:] Please specify modification and rerun PTMProphet ... ​ [INFO:] processed 84000/199305 spectrum_queries [ERROR:] Cannot initialize for sequence: nSVGM[147]IAGGTc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_total_Slot2-39_1_8060_diatracer.457728.457728.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nGASGGGGLMNc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_total_Slot2-39_1_8060_diatracer.458103.458103.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nPMDELVTLEEADc[61], unknown mods may exist in spectrum 20240927_SW-KF_S2_total_Slot2-39_1_8060_diatracer.458663.458663.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nLNLAEDGPKFQSc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_total_Slot2-39_1_8060_diatracer.458683.458683.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nLNIVSLEAc[61], unknown mods may exist in spectrum 20240927_SW-KF_S2_total_Slot2-39_1_8060_diatracer.459268.459268.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nNAVLGGQATc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_total_Slot2-39_1_8060_diatracer.459541.459541.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nGASGGGGLMNc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_total_Slot2-39_1_8060_diatracer.461731.461731.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: n[43]DLQPTVILAAEAc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_total_Slot2-39_1_8060_diatracer.461995.461995.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nDDALIQERLEYETTLc[61], unknown mods may exist in spectrum 20240927_SW-KF_S2_total_Slot2-39_1_8060_diatracer.462315.462315.4 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nWPTAQHPAQGPAc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_total_Slot2-39_1_8060_diatracer.462816.462816.3 [INFO:] Please specify modification and rerun PTMProphet ... ​ [INFO:] processed 85000/199305 spectrum_queries [ERROR:] Cannot initialize for sequence: n[43]DLQPTVILAAEAc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_total_Slot2-39_1_8060_diatracer.463250.463250.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nLQSGIC[160]HLFREc[61], unknown mods may exist in spectrum 20240927_SW-KF_S2_total_Slot2-39_1_8060_diatracer.463767.463767.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nGWGWGQGFc[61], unknown mods may exist in spectrum 20240927_SW-KF_S2_total_Slot2-39_1_8060_diatracer.465205.465205.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nLELPDNVSGEFGc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_total_Slot2-39_1_8060_diatracer.465722.465722.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nKFLVAIGAGc[61], unknown mods may exist in spectrum 20240927_SW-KF_S2_total_Slot2-39_1_8060_diatracer.468435.468435.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nQPVSM[147]QNGc[61], unknown mods may exist in spectrum 20240927_SW-KF_S2_total_Slot2-39_1_8060_diatracer.468487.468487.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nEVLLSPGLQGVGVc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_total_Slot2-39_1_8060_diatracer.469355.469355.3 [INFO:] Please specify modification and rerun PTMProphet ... ​ [INFO:] processed 86000/199305 spectrum_queries [ERROR:] Cannot initialize for sequence: nSVGM[147]IAGGTc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_total_Slot2-39_1_8060_diatracer.470489.470489.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nDVNVIPATAc[61], unknown mods may exist in spectrum 20240927_SW-KF_S2_total_Slot2-39_1_8060_diatracer.471575.471575.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nGASGGGGLMNc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_total_Slot2-39_1_8060_diatracer.474392.474392.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nGPGLSGGPPEc[61], unknown mods may exist in spectrum 20240927_SW-KF_S2_total_Slot2-39_1_8060_diatracer.474662.474662.2 [INFO:] Please specify modification and rerun PTMProphet ... ​ [INFO:] processed 87000/199305 spectrum_queries [ERROR:] Cannot initialize for sequence: nQLDRDLHGSGGTc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_total_Slot2-39_1_8060_diatracer.480518.480518.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nEGAEVAPGQc[61], unknown mods may exist in spectrum 20240927_SW-KF_S2_total_Slot2-39_1_8060_diatracer.481856.481856.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nHQESLGGGAc[61], unknown mods may exist in spectrum 20240927_SW-KF_S2_total_Slot2-39_1_8060_diatracer.483071.483071.2 [INFO:] Please specify modification and rerun PTMProphet ... ​ [INFO:] processed 88000/199305 spectrum_queries [ERROR:] Cannot initialize for sequence: nGAGAAVGAAASGc[61], unknown mods may exist in spectrum 20240927_SW-KF_S2_total_Slot2-39_1_8060_diatracer.484510.484510.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nPLFPLPAAFYHPGSYLGLKEc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_total_Slot2-39_1_8060_diatracer.486150.486150.2 [INFO:] Please specify modification and rerun PTMProphet ... ​ [INFO:] processed 89000/199305 spectrum_queries [ERROR:] Cannot initialize for sequence: nGGSYSQAASSDSAQGSD[158]VSLTAC[160]c[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_total_Slot2-39_1_8060_diatracer.489839.489839.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nGGSYSQAASSDSAQGSD[158]VSLTAC[160]c[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_total_Slot2-39_1_8060_diatracer.490932.490932.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nNNLSFIETSALDSTNVE[172]EAFc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_total_Slot2-39_1_8060_diatracer.490961.490961.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nNNLSFIETSALDSTNVE[172]EAFc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_total_Slot2-39_1_8060_diatracer.491507.491507.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nDQMQQLLTQVVSTLDQVTKPDTEAc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_total_Slot2-39_1_8060_diatracer.491959.491959.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nLSYPSHSSADINSSLPPc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_total_Slot2-39_1_8060_diatracer.494515.494515.2 [INFO:] Please specify modification and rerun PTMProphet ... ​ [INFO:] processed 90000/199305 spectrum_queries [ERROR:] Cannot initialize for sequence: nPNPPLNLDSYIVGQNDc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_total_Slot2-39_1_8060_diatracer.497798.497798.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nNEVAILQNLHHPGIVNc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_total_Slot2-39_1_8060_diatracer.498061.498061.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nVWTSAETPLTILLQQPc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_total_Slot2-39_1_8060_diatracer.501222.501222.2 [INFO:] Please specify modification and rerun PTMProphet ... ​ [INFO:] processed 91000/199305 spectrum_queries [ERROR:] Cannot initialize for sequence: nGGPGGLQHVEAALPQPLC[160]c[61], unknown mods may exist in spectrum 20240927_SW-KF_S2_total_Slot2-39_1_8060_diatracer.506307.506307.2 [INFO:] Please specify modification and rerun PTMProphet ... ​ [INFO:] processed 93000/199305 spectrum_queries [ERROR:] Cannot initialize for sequence: nADVQDWAKEQTFTHLc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_total_Slot2-39_1_8060_diatracer.514090.514090.2 [INFO:] Please specify modification and rerun PTMProphet ... ​ [INFO:] processed 94000/199305 spectrum_queries [ERROR:] Cannot initialize for sequence: nQPFMLQHASGEHKDGHGKc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_total_Slot2-39_1_8060_diatracer.524366.524366.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nVGSHPEGGASWLSTAANFLSRSFYWc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_total_Slot2-39_1_8060_diatracer.524773.524773.4 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nC[160]VIEHTNPAFFc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_total_Slot2-39_1_8060_diatracer.525173.525173.2 [INFO:] Please specify modification and rerun PTMProphet ... ​ [INFO:] processed 95000/199305 spectrum_queries [ERROR:] Cannot initialize for sequence: nLEPFGQPGLGNAEc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_total_Slot2-39_1_8060_diatracer.525295.525295.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nTNPNVESHATGVNc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_total_Slot2-39_1_8060_diatracer.525535.525535.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: n[43]QSGLAGGGPPAGC[160]ASAc[61], unknown mods may exist in spectrum 20240927_SW-KF_S2_total_Slot2-39_1_8060_diatracer.526406.526406.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nVGSHPEGGASWLSTAANFLSRSFYWc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_total_Slot2-39_1_8060_diatracer.527149.527149.4 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nQSGPDRGAGPSDHGQGPHQGPc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_total_Slot2-39_1_8060_diatracer.530003.530003.3 [INFO:] Please specify modification and rerun PTMProphet ... ​ [INFO:] processed 96000/199305 spectrum_queries [ERROR:] Cannot initialize for sequence: nEGRQAGPAGAVAAPAAc[61], unknown mods may exist in spectrum 20240927_SW-KF_S2_total_Slot2-39_1_8060_diatracer.530955.530955.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nLPGGQQPGAGGPGPQc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_total_Slot2-39_1_8060_diatracer.531804.531804.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nM[147]LMLLAAGM[147]AAC[160]HSFHLELVIQYAc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_total_Slot2-39_1_8060_diatracer.531848.531848.4 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nSLGLSSQTPM[147]LTSc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_total_Slot2-39_1_8060_diatracer.532897.532897.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nVDGVMILPVLIMIALPSPSMc[61], unknown mods may exist in spectrum 20240927_SW-KF_S2_total_Slot2-39_1_8060_diatracer.532965.532965.3 [INFO:] Please specify modification and rerun PTMProphet ... ​ [INFO:] processed 97000/199305 spectrum_queries [ERROR:] Cannot initialize for sequence: nNEIIPPTDPFPIc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_total_Slot2-39_1_8060_diatracer.535924.535924.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nYDQIHFVLNTVc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_total_Slot2-39_1_8060_diatracer.538041.538041.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nGPEGSVTGELGPGNKc[61], unknown mods may exist in spectrum 20240927_SW-KF_S2_total_Slot2-39_1_8060_diatracer.538317.538317.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nLQVENSSLPQADEIQVIEEADEEEc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_total_Slot2-39_1_8060_diatracer.538596.538596.4 [INFO:] Please specify modification and rerun PTMProphet ... ​ [INFO:] processed 98000/199305 spectrum_queries [ERROR:] Cannot initialize for sequence: nWLNVLTVVC[160]LDc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_total_Slot2-39_1_8060_diatracer.542033.542033.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nQVEEGSLDLDELSSSAAAKAc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_total_Slot2-39_1_8060_diatracer.543663.543663.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nVEEGEASLPSPAMTLSSAIDc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_total_Slot2-39_1_8060_diatracer.545467.545467.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nMSPGYLEVFADEc[61], unknown mods may exist in spectrum 20240927_SW-KF_S2_total_Slot2-39_1_8060_diatracer.545722.545722.2 [INFO:] Please specify modification and rerun PTMProphet ... ​ [INFO:] processed 99000/199305 spectrum_queries [ERROR:] Cannot initialize for sequence: nYYEC[160]DVLPFME[172]IGSVAHKFYLLc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_total_Slot2-39_1_8060_diatracer.546488.546488.4 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nVEEGEASLPSPAMTLSSAIDc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_total_Slot2-39_1_8060_diatracer.547841.547841.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nLLLSNAVINELEc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_total_Slot2-39_1_8060_diatracer.548898.548898.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nESATLQPFFTLQLDIQSDc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_total_Slot2-39_1_8060_diatracer.549456.549456.3 [INFO:] Please specify modification and rerun PTMProphet ... ​ [INFO:] processed 100000/199305 spectrum_queries [ERROR:] Cannot initialize for sequence: nQVIEDKRYVALc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_total_Slot2-39_1_8060_diatracer.551391.551391.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nGFSC[160]LSLLNSWDc[61], unknown mods may exist in spectrum 20240927_SW-KF_S2_total_Slot2-39_1_8060_diatracer.552429.552429.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nNMVLLVYFQFDAAIPLC[160]c[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_total_Slot2-39_1_8060_diatracer.555082.555082.3 [INFO:] Please specify modification and rerun PTMProphet ... ​ [INFO:] processed 101000/199305 spectrum_queries [ERROR:] Cannot initialize for sequence: nAVLKWADGETADQTLSLMEc[61], unknown mods may exist in spectrum 20240927_SW-KF_S2_total_Slot2-39_1_8060_diatracer.558244.558244.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nSVAAAVGGALFDKLFSWAHDGc[61], unknown mods may exist in spectrum 20240927_SW-KF_S2_total_Slot2-39_1_8060_diatracer.559526.559526.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nGPNHAVSTAC[160]TTGAHAVGDSFc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_total_Slot2-39_1_8060_diatracer.561356.561356.3 [INFO:] Please specify modification and rerun PTMProphet ... ​ [INFO:] processed 102000/199305 spectrum_queries [ERROR:] Cannot initialize for sequence: nLM[147]LQDNC[160]C[160]GVNGPSDWQc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_total_Slot2-39_1_8060_diatracer.562172.562172.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nLADQAVSLYDKLc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_total_Slot2-39_1_8060_diatracer.563646.563646.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nGPNHAVSTAC[160]TTGAHAVGDSFc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_total_Slot2-39_1_8060_diatracer.563722.563722.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nGPEGSVTGELGPGNKc[61], unknown mods may exist in spectrum 20240927_SW-KF_S2_total_Slot2-39_1_8060_diatracer.564395.564395.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nTYLILETDTLEc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_total_Slot2-39_1_8060_diatracer.564758.564758.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nYYEC[160]DVLPFME[172]IGSVAHKFYLLc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_total_Slot2-39_1_8060_diatracer.565443.565443.4 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nALGSLVPQIAPVGC[160]c[61], unknown mods may exist in spectrum 20240927_SW-KF_S2_total_Slot2-39_1_8060_diatracer.566081.566081.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nSARAGGLLVAAMSAFLGIAPSPc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_total_Slot2-39_1_8060_diatracer.566123.566123.3 [INFO:] Please specify modification and rerun PTMProphet ... ​ [INFO:] processed 103000/199305 spectrum_queries [ERROR:] Cannot initialize for sequence: nIEGEIDPSPETLADALSLDAc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_total_Slot2-39_1_8060_diatracer.568299.568299.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nSVAAAVGGALFDKLFSWAHDGc[61], unknown mods may exist in spectrum 20240927_SW-KF_S2_total_Slot2-39_1_8060_diatracer.569011.569011.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nTIMEHTLNHPYc[61], unknown mods may exist in spectrum 20240927_SW-KF_S2_total_Slot2-39_1_8060_diatracer.571692.571692.2 [INFO:] Please specify modification and rerun PTMProphet ... ​ [INFO:] processed 104000/199305 spectrum_queries [ERROR:] Cannot initialize for sequence: nPNRGSC[160]AGADEPGVc[61], unknown mods may exist in spectrum 20240927_SW-KF_S2_total_Slot2-39_1_8060_diatracer.572940.572940.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nC[160]PILPSTLGASGC[160]WWC[160]C[160]AC[160]C[160]GWRc[61], unknown mods may exist in spectrum 20240927_SW-KF_S2_total_Slot2-39_1_8060_diatracer.573230.573230.4 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nQDQC[160]C[160]TTC[160]VVQc[61], unknown mods may exist in spectrum 20240927_SW-KF_S2_total_Slot2-39_1_8060_diatracer.573681.573681.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nEPGLGASGPAAVQVSc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_total_Slot2-39_1_8060_diatracer.574091.574091.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nNHLAGEAQVc[61], unknown mods may exist in spectrum 20240927_SW-KF_S2_total_Slot2-39_1_8060_diatracer.575278.575278.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nVYASFALC[160]M[147]FVAc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_total_Slot2-39_1_8060_diatracer.575316.575316.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nSSSSPALPTAGNC[160]TSc[61], unknown mods may exist in spectrum 20240927_SW-KF_S2_total_Slot2-39_1_8060_diatracer.575346.575346.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nGGTAGSALSC[160]c[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_total_Slot2-39_1_8060_diatracer.576274.576274.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nIQC[160]AAGYEQSEHNVC[160]Qc[61], unknown mods may exist in spectrum 20240927_SW-KF_S2_total_Slot2-39_1_8060_diatracer.576310.576310.4 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nLPMPALSLPTRWc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_total_Slot2-39_1_8060_diatracer.576661.576661.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nILQGGVGIPHIRMc[61], unknown mods may exist in spectrum 20240927_SW-KF_S2_total_Slot2-39_1_8060_diatracer.577678.577678.3 [INFO:] Please specify modification and rerun PTMProphet ... ​ [INFO:] processed 105000/199305 spectrum_queries [ERROR:] Cannot initialize for sequence: nHETVVSLAAEGQYc[61], unknown mods may exist in spectrum 20240927_SW-KF_S2_total_Slot2-39_1_8060_diatracer.579545.579545.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nYPVVPVHLDTTIc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_total_Slot2-39_1_8060_diatracer.579560.579560.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nELHIQYLSHLLQRNFc[61], unknown mods may exist in spectrum 20240927_SW-KF_S2_total_Slot2-39_1_8060_diatracer.580052.580052.4 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nFNAIALSAAc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_total_Slot2-39_1_8060_diatracer.582941.582941.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nEVTVTPNAAWGGEGc[61], unknown mods may exist in spectrum 20240927_SW-KF_S2_total_Slot2-39_1_8060_diatracer.584150.584150.3 [INFO:] Please specify modification and rerun PTMProphet ... ​ [INFO:] processed 106000/199305 spectrum_queries [ERROR:] Cannot initialize for sequence: nLGGPPKSGEPc[61], unknown mods may exist in spectrum 20240927_SW-KF_S2_total_Slot2-39_1_8060_diatracer.585228.585228.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nAPGPAEGLILSAC[160]GAc[61], unknown mods may exist in spectrum 20240927_SW-KF_S2_total_Slot2-39_1_8060_diatracer.585939.585939.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nVPC[160]SFVVEGGGGPPc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_total_Slot2-39_1_8060_diatracer.586160.586160.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nPGLSSWPC[160]c[61], unknown mods may exist in spectrum 20240927_SW-KF_S2_total_Slot2-39_1_8060_diatracer.587400.587400.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nPLYTLLVDc[61], unknown mods may exist in spectrum 20240927_SW-KF_S2_total_Slot2-39_1_8060_diatracer.588456.588456.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nGVHGHFPTAFNEGAc[61], unknown mods may exist in spectrum 20240927_SW-KF_S2_total_Slot2-39_1_8060_diatracer.588822.588822.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nPGLSSWPC[160]c[61], unknown mods may exist in spectrum 20240927_SW-KF_S2_total_Slot2-39_1_8060_diatracer.589074.589074.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nLC[160]GTFLGGPKPPQc[61], unknown mods may exist in spectrum 20240927_SW-KF_S2_total_Slot2-39_1_8060_diatracer.589085.589085.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nGVSSPAPPGPc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_total_Slot2-39_1_8060_diatracer.589304.589304.2 [INFO:] Please specify modification and rerun PTMProphet ... ​ [INFO:] processed 107000/199305 spectrum_queries [ERROR:] Cannot initialize for sequence: nLEAEGLIDc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_total_Slot2-39_1_8060_diatracer.590829.590829.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nFSGERSGGGLHSDGc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_total_Slot2-39_1_8060_diatracer.591323.591323.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nGDVGPADVEc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_total_Slot2-39_1_8060_diatracer.592287.592287.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nPNRGSC[160]AGADEPGVc[61], unknown mods may exist in spectrum 20240927_SW-KF_S2_total_Slot2-39_1_8060_diatracer.594192.594192.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nLYKEYLQM[147]AQNGSFQc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_total_Slot2-39_1_8060_diatracer.594655.594655.4 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nEQAAWPGSGAGAAAAAc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_total_Slot2-39_1_8060_diatracer.595183.595183.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nTQPLGFSTGc[61], unknown mods may exist in spectrum 20240927_SW-KF_S2_total_Slot2-39_1_8060_diatracer.595932.595932.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nGILGAEYAEc[61], unknown mods may exist in spectrum 20240927_SW-KF_S2_total_Slot2-39_1_8060_diatracer.596160.596160.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nDFEWDPSLTEVAc[61], unknown mods may exist in spectrum 20240927_SW-KF_S2_total_Slot2-39_1_8060_diatracer.596508.596508.3 [INFO:] Please specify modification and rerun PTMProphet ... ​ [INFO:] processed 108000/199305 spectrum_queries [ERROR:] Cannot initialize for sequence: nSVQGAIMPDQLLASc[61], unknown mods may exist in spectrum 20240927_SW-KF_S2_total_Slot2-39_1_8060_diatracer.596908.596908.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nEGRQAGPAGAVAAPAAc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_total_Slot2-39_1_8060_diatracer.596940.596940.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nPAATTAKAGAVGQTAGc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_total_Slot2-39_1_8060_diatracer.598019.598019.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nELGGLGEARc[61], unknown mods may exist in spectrum 20240927_SW-KF_S2_total_Slot2-39_1_8060_diatracer.599066.599066.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nENALSYTAc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_total_Slot2-39_1_8060_diatracer.599365.599365.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nAGDSGAKVFLEVQPQEEAc[61], unknown mods may exist in spectrum 20240927_SW-KF_S2_total_Slot2-39_1_8060_diatracer.601221.601221.4 [INFO:] Please specify modification and rerun PTMProphet ... ​ [INFO:] processed 109000/199305 spectrum_queries [ERROR:] Cannot initialize for sequence: nENILQFAGc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_total_Slot2-39_1_8060_diatracer.605126.605126.2 [INFO:] Please specify modification and rerun PTMProphet ... ​ [INFO:] processed 110000/199305 spectrum_queries [ERROR:] Cannot initialize for sequence: nGAAAAGGGGGGAAAc[61], unknown mods may exist in spectrum 20240927_SW-KF_S2_total_Slot2-39_1_8060_diatracer.609681.609681.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nFFFNIFTc[61], unknown mods may exist in spectrum 20240927_SW-KF_S2_total_Slot2-39_1_8060_diatracer.610147.610147.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nKLDALNMVc[61], unknown mods may exist in spectrum 20240927_SW-KF_S2_total_Slot2-39_1_8060_diatracer.610879.610879.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nGGTAGSALSC[160]c[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_total_Slot2-39_1_8060_diatracer.611397.611397.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nPLEMAWSVALVLALTVTPGPGARc[61], unknown mods may exist in spectrum 20240927_SW-KF_S2_total_Slot2-39_1_8060_diatracer.612772.612772.2 [INFO:] Please specify modification and rerun PTMProphet ... ​ [INFO:] processed 111000/199305 spectrum_queries [ERROR:] Cannot initialize for sequence: nAPGAEGLGHSGGPLHC[160]LGGVc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_total_Slot2-39_1_8060_diatracer.620098.620098.2 [INFO:] Please specify modification and rerun PTMProphet ... ​ [INFO:] processed 112000/199305 spectrum_queries [ERROR:] Cannot initialize for sequence: nINTLEELGVLLVMAGFVc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_total_Slot2-39_1_8060_diatracer.625170.625170.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nAEPPQC[160]TSLAWSADGQVSGSVLSGDSASSc[61], unknown mods may exist in spectrum 20240927_SW-KF_S2_total_Slot2-39_1_8060_diatracer.625666.625666.3 [INFO:] Please specify modification and rerun PTMProphet ... ​ [INFO:] processed 113000/199305 spectrum_queries [ERROR:] Cannot initialize for sequence: nDAPMQAGVPWLLLTPSGSc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_total_Slot2-39_1_8060_diatracer.626790.626790.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nVC[160]IAQDSQTAVC[160]ISHRc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_total_Slot2-39_1_8060_diatracer.631407.631407.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nELNRFDGSGPYSTLSSPQLGRSTYMETYVYFYc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_total_Slot2-39_1_8060_diatracer.632943.632943.4 [INFO:] Please specify modification and rerun PTMProphet ... ​ [INFO:] processed 114000/199305 spectrum_queries [ERROR:] Cannot initialize for sequence: nVDLLLVM[147]GTSLQGRGLAGc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_total_Slot2-39_1_8060_diatracer.636403.636403.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nDAPMQAGVPWLLLTPSGSc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_total_Slot2-39_1_8060_diatracer.637957.637957.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nVDLLLVM[147]GTSLQGRGLAGc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_total_Slot2-39_1_8060_diatracer.638644.638644.2 [INFO:] Please specify modification and rerun PTMProphet ... ​ [INFO:] processed 115000/199305 spectrum_queries [ERROR:] Cannot initialize for sequence: nSSAPFSPPSGPPEKc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_total_Slot2-39_1_8060_diatracer.643973.643973.2 [INFO:] Please specify modification and rerun PTMProphet ... ​ [INFO:] processed 116000/199305 spectrum_queries [ERROR:] Cannot initialize for sequence: nSPISHEESRLLQLLNKALPc[61], unknown mods may exist in spectrum 20240927_SW-KF_S2_total_Slot2-39_1_8060_diatracer.646045.646045.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nSVASGTVSHQAATIRDTLSQGSc[61], unknown mods may exist in spectrum 20240927_SW-KF_S2_total_Slot2-39_1_8060_diatracer.646702.646702.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nSPEATSPTHIATLPPPWSHTc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_total_Slot2-39_1_8060_diatracer.648651.648651.3 [INFO:] Please specify modification and rerun PTMProphet ... ​ [INFO:] processed 117000/199305 spectrum_queries [ERROR:] Cannot initialize for sequence: nELDENHYQLELc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_total_Slot2-39_1_8060_diatracer.651554.651554.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nLLEAHEEQNVDSc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_total_Slot2-39_1_8060_diatracer.652886.652886.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nLYDEIFISSEPNc[61], unknown mods may exist in spectrum 20240927_SW-KF_S2_total_Slot2-39_1_8060_diatracer.653022.653022.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: n[43]QSGLAGGGPPAGC[160]ASAc[61], unknown mods may exist in spectrum 20240927_SW-KF_S2_total_Slot2-39_1_8060_diatracer.653994.653994.2 [INFO:] Please specify modification and rerun PTMProphet ... ​ [INFO:] processed 118000/199305 spectrum_queries [ERROR:] Cannot initialize for sequence: nVVSQSGQQGTWDFc[61], unknown mods may exist in spectrum 20240927_SW-KF_S2_total_Slot2-39_1_8060_diatracer.660214.660214.2 [INFO:] Please specify modification and rerun PTMProphet ... ​ [INFO:] processed 119000/199305 spectrum_queries [ERROR:] Cannot initialize for sequence: nVLAQEAGAAESGGGGAASAFPWLGRAKSGSAGc[61], unknown mods may exist in spectrum 20240927_SW-KF_S2_total_Slot2-39_1_8060_diatracer.661616.661616.4 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nVSFPTPTLAPSPFc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_total_Slot2-39_1_8060_diatracer.663077.663077.2 [INFO:] Please specify modification and rerun PTMProphet ... ​ [INFO:] processed 120000/199305 spectrum_queries [ERROR:] Cannot initialize for sequence: nSSAPFSPPSGPPEKc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_total_Slot2-39_1_8060_diatracer.666435.666435.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nPNSVSTAAGKEVSDc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_total_Slot2-39_1_8060_diatracer.667419.667419.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nSVASGTVSHQAATIRDTLSQGSc[61], unknown mods may exist in spectrum 20240927_SW-KF_S2_total_Slot2-39_1_8060_diatracer.668981.668981.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nNVM[147]LENFTLLASLAGLC[160]DLc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_total_Slot2-39_1_8060_diatracer.670376.670376.3 [INFO:] Please specify modification and rerun PTMProphet ... ​ [INFO:] processed 121000/199305 spectrum_queries [ERROR:] Cannot initialize for sequence: nPSNAYLSDSYAPPc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_total_Slot2-39_1_8060_diatracer.672828.672828.2 [INFO:] Please specify modification and rerun PTMProphet ... ​ [INFO:] processed 122000/199305 spectrum_queries [ERROR:] Cannot initialize for sequence: nLLEAHEEQNVDSc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_total_Slot2-39_1_8060_diatracer.677397.677397.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nDTGIAAMRQQQPNc[61], unknown mods may exist in spectrum 20240927_SW-KF_S2_total_Slot2-39_1_8060_diatracer.677541.677541.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nAPSSSLGAFFAGDLPPPLQAGAAc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_total_Slot2-39_1_8060_diatracer.680413.680413.3 [INFO:] Please specify modification and rerun PTMProphet ... ​ [INFO:] processed 123000/199305 spectrum_queries [ERROR:] Cannot initialize for sequence: nQELGDGLDDEIAVc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_total_Slot2-39_1_8060_diatracer.683628.683628.2 [INFO:] Please specify modification and rerun PTMProphet ... ​ [INFO:] processed 124000/199305 spectrum_queries [ERROR:] Cannot initialize for sequence: nDILHLADLPGQKPYLVGEC[160]c[61], unknown mods may exist in spectrum 20240927_SW-KF_S2_total_Slot2-39_1_8060_diatracer.690220.690220.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nYQLFFFSFLWc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_total_Slot2-39_1_8060_diatracer.691429.691429.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nQESEGSDLLEVNFVLHGHEc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_total_Slot2-39_1_8060_diatracer.691460.691460.3 [INFO:] Please specify modification and rerun PTMProphet ... ​ [INFO:] processed 125000/199305 spectrum_queries [ERROR:] Cannot initialize for sequence: nKGDGGGAGGGGGGGc[61], unknown mods may exist in spectrum 20240927_SW-KF_S2_total_Slot2-39_1_8060_diatracer.694348.694348.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nAVAEDPVAAAc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_total_Slot2-39_1_8060_diatracer.694505.694505.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nPVAGLDIPPASPWVc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_total_Slot2-39_1_8060_diatracer.694553.694553.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nEEVPPPEGEc[61], unknown mods may exist in spectrum 20240927_SW-KF_S2_total_Slot2-39_1_8060_diatracer.695316.695316.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nLVENDVAGIDVNM[147]Gc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_total_Slot2-39_1_8060_diatracer.695578.695578.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nVSGAAAM[147]SSLc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_total_Slot2-39_1_8060_diatracer.696065.696065.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nLNSDSVNPNc[61], unknown mods may exist in spectrum 20240927_SW-KF_S2_total_Slot2-39_1_8060_diatracer.696366.696366.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nLSVAQFGEFSGITSc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_total_Slot2-39_1_8060_diatracer.697150.697150.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nPALAAGPAALLAALLAC[160]GVALc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_total_Slot2-39_1_8060_diatracer.698334.698334.4 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nHNWGQGFRLGDQc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_total_Slot2-39_1_8060_diatracer.698453.698453.3 [INFO:] Please specify modification and rerun PTMProphet ... ​ [INFO:] processed 126000/199305 spectrum_queries [ERROR:] Cannot initialize for sequence: nHILDGTAEEc[61], unknown mods may exist in spectrum 20240927_SW-KF_S2_total_Slot2-39_1_8060_diatracer.699308.699308.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nM[147]AATVGIPTIPLPRc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_total_Slot2-39_1_8060_diatracer.699334.699334.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nWDAQAVMGAc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_total_Slot2-39_1_8060_diatracer.699583.699583.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nVEDYEPYPDDGM[147]Gc[61], unknown mods may exist in spectrum 20240927_SW-KF_S2_total_Slot2-39_1_8060_diatracer.699785.699785.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nIHVLPEGVAc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_total_Slot2-39_1_8060_diatracer.701101.701101.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nPTITNDRSAPLIRc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_total_Slot2-39_1_8060_diatracer.701368.701368.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nEIHPAAEAC[160]c[61], unknown mods may exist in spectrum 20240927_SW-KF_S2_total_Slot2-39_1_8060_diatracer.702040.702040.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nQVAAQAVTDPc[61], unknown mods may exist in spectrum 20240927_SW-KF_S2_total_Slot2-39_1_8060_diatracer.704008.704008.2 [INFO:] Please specify modification and rerun PTMProphet ... ​ [INFO:] processed 127000/199305 spectrum_queries [ERROR:] Cannot initialize for sequence: nPDTDMRPDTDMRc[61], unknown mods may exist in spectrum 20240927_SW-KF_S2_total_Slot2-39_1_8060_diatracer.704302.704302.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nQTPGC[160]RADPGWGLc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_total_Slot2-39_1_8060_diatracer.706185.706185.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nDGVSSC[160]WPGc[61], unknown mods may exist in spectrum 20240927_SW-KF_S2_total_Slot2-39_1_8060_diatracer.706765.706765.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nYLPGYYSEKLEAIQLDGc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_total_Slot2-39_1_8060_diatracer.707040.707040.4 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nLM[147]AQNAGMMGIGPSQc[61], unknown mods may exist in spectrum 20240927_SW-KF_S2_total_Slot2-39_1_8060_diatracer.708079.708079.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nVLGAPHGQSPQLAPNc[61], unknown mods may exist in spectrum 20240927_SW-KF_S2_total_Slot2-39_1_8060_diatracer.709089.709089.3 [INFO:] Please specify modification and rerun PTMProphet ... ​ [INFO:] processed 128000/199305 spectrum_queries [ERROR:] Cannot initialize for sequence: n[43]MSVDLPGEYDSSFHPSTc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_total_Slot2-39_1_8060_diatracer.710425.710425.4 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nQTGTSSLSFc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_total_Slot2-39_1_8060_diatracer.710852.710852.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nPQSAQISAGNTSERc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_total_Slot2-39_1_8060_diatracer.711173.711173.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nQYKC[160]DEC[160]GKASTc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_total_Slot2-39_1_8060_diatracer.711346.711346.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nPEGGGAPGAAQAc[61], unknown mods may exist in spectrum 20240927_SW-KF_S2_total_Slot2-39_1_8060_diatracer.711570.711570.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nAGASFFSWIQHRc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_total_Slot2-39_1_8060_diatracer.712396.712396.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nEVFQIASNc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_total_Slot2-39_1_8060_diatracer.714208.714208.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nSPPPAPEPHc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_total_Slot2-39_1_8060_diatracer.714784.714784.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nKPLELSSGHc[61], unknown mods may exist in spectrum 20240927_SW-KF_S2_total_Slot2-39_1_8060_diatracer.715047.715047.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nFTGSVPPAEAc[61], unknown mods may exist in spectrum 20240927_SW-KF_S2_total_Slot2-39_1_8060_diatracer.715221.715221.2 [INFO:] Please specify modification and rerun PTMProphet ... ​ [INFO:] processed 129000/199305 spectrum_queries [ERROR:] Cannot initialize for sequence: nQVAAQAVTDPc[61], unknown mods may exist in spectrum 20240927_SW-KF_S2_total_Slot2-39_1_8060_diatracer.716082.716082.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nHNWGQGFRLGDQc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_total_Slot2-39_1_8060_diatracer.716573.716573.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nVGSVLE[172]EVAAAAEGGVc[61], unknown mods may exist in spectrum 20240927_SW-KF_S2_total_Slot2-39_1_8060_diatracer.717441.717441.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nTSPAAPQQTPc[61], unknown mods may exist in spectrum 20240927_SW-KF_S2_total_Slot2-39_1_8060_diatracer.718071.718071.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nGSIVHSDALHFIKc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_total_Slot2-39_1_8060_diatracer.718780.718780.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nPLLSQEVNAc[61], unknown mods may exist in spectrum 20240927_SW-KF_S2_total_Slot2-39_1_8060_diatracer.720991.720991.2 [INFO:] Please specify modification and rerun PTMProphet ... ​ [INFO:] processed 130000/199305 spectrum_queries [ERROR:] Cannot initialize for sequence: nPEGGGAPGAAQAc[61], unknown mods may exist in spectrum 20240927_SW-KF_S2_total_Slot2-39_1_8060_diatracer.721628.721628.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nEAAFGGGLLSPGPEATc[61], unknown mods may exist in spectrum 20240927_SW-KF_S2_total_Slot2-39_1_8060_diatracer.724847.724847.3 [INFO:] Please specify modification and rerun PTMProphet ... ​ [INFO:] processed 131000/199305 spectrum_queries [ERROR:] Cannot initialize for sequence: nETYGAKDIAEKVLc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_total_Slot2-39_1_8060_diatracer.729357.729357.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nAIPSSPSSPAc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_total_Slot2-39_1_8060_diatracer.730485.730485.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nLSVAQFGEFSGITSc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_total_Slot2-39_1_8060_diatracer.731385.731385.3 [INFO:] Please specify modification and rerun PTMProphet ... ​ [INFO:] processed 132000/199305 spectrum_queries [ERROR:] Cannot initialize for sequence: nEVLGLPDEESIKEc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_total_Slot2-39_1_8060_diatracer.733741.733741.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nEKFQTQLPLHEPc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_total_Slot2-39_1_8060_diatracer.735895.735895.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nLEGHQSSVVc[61], unknown mods may exist in spectrum 20240927_SW-KF_S2_total_Slot2-39_1_8060_diatracer.736511.736511.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nGQGTMNPPHc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_total_Slot2-39_1_8060_diatracer.737564.737564.2 [INFO:] Please specify modification and rerun PTMProphet ... ​ [INFO:] processed 133000/199305 spectrum_queries [ERROR:] Cannot initialize for sequence: nVSGAAAM[147]SSLc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_total_Slot2-39_1_8060_diatracer.738370.738370.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nKLELDVPAAc[61], unknown mods may exist in spectrum 20240927_SW-KF_S2_total_Slot2-39_1_8060_diatracer.738642.738642.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nKPLELSSGHc[61], unknown mods may exist in spectrum 20240927_SW-KF_S2_total_Slot2-39_1_8060_diatracer.739226.739226.2 [INFO:] Please specify modification and rerun PTMProphet ... ​ [INFO:] processed 135000/199305 spectrum_queries [ERROR:] Cannot initialize for sequence: nQDLPSSLPEPETQAPPRSc[61], unknown mods may exist in spectrum 20240927_SW-KF_S2_total_Slot2-39_1_8060_diatracer.753435.753435.2 [INFO:] Please specify modification and rerun PTMProphet ... ​ [INFO:] processed 136000/199305 spectrum_queries [ERROR:] Cannot initialize for sequence: nQEFGWLIPMGTADISVYc[61], unknown mods may exist in spectrum 20240927_SW-KF_S2_total_Slot2-39_1_8060_diatracer.760650.760650.2 [INFO:] Please specify modification and rerun PTMProphet ... ​ [INFO:] processed 137000/199305 spectrum_queries [ERROR:] Cannot initialize for sequence: nDQGLQINVc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_total_Slot2-39_1_8060_diatracer.764960.764960.1 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nGFNPPLTFNFPASANHAEc[61], unknown mods may exist in spectrum 20240927_SW-KF_S2_total_Slot2-39_1_8060_diatracer.765547.765547.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nAGITPVAVAGPSTPLEADLKPSQTPQPKDKc[61], unknown mods may exist in spectrum 20240927_SW-KF_S2_total_Slot2-39_1_8060_diatracer.767478.767478.4 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nTEIGLLSDPNGFSGFLHKQAVc[61], unknown mods may exist in spectrum 20240927_SW-KF_S2_total_Slot2-39_1_8060_diatracer.768992.768992.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nLNGAASWTEITEGEc[61], unknown mods may exist in spectrum 20240927_SW-KF_S2_total_Slot2-39_1_8060_diatracer.769102.769102.2 [INFO:] Please specify modification and rerun PTMProphet ... ​ [INFO:] processed 138000/199305 spectrum_queries [ERROR:] Cannot initialize for sequence: nPAQVGDSFGPTSLADGGPAGSGWSc[61], unknown mods may exist in spectrum 20240927_SW-KF_S2_total_Slot2-39_1_8060_diatracer.770540.770540.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nSATDADVVNSGWEGc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_total_Slot2-39_1_8060_diatracer.772320.772320.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nLGQDALGELIFLHc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_total_Slot2-39_1_8060_diatracer.773220.773220.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nWWNNLSDGQRTVTGSC[160]GPSPc[61], unknown mods may exist in spectrum 20240927_SW-KF_S2_total_Slot2-39_1_8060_diatracer.774980.774980.3 [INFO:] Please specify modification and rerun PTMProphet ... ​ [INFO:] processed 139000/199305 spectrum_queries [ERROR:] Cannot initialize for sequence: nDDIILFSGKVSC[160]Pc[61], unknown mods may exist in spectrum 20240927_SW-KF_S2_total_Slot2-39_1_8060_diatracer.776732.776732.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nVC[160]AVSPGDSPIVSKc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_total_Slot2-39_1_8060_diatracer.776955.776955.2 [INFO:] Please specify modification and rerun PTMProphet ... ​ [INFO:] processed 140000/199305 spectrum_queries [ERROR:] Cannot initialize for sequence: nTEIGLLSDPNGFSGFLHKQAVc[61], unknown mods may exist in spectrum 20240927_SW-KF_S2_total_Slot2-39_1_8060_diatracer.784203.784203.3 [INFO:] Please specify modification and rerun PTMProphet ... ​ [INFO:] processed 141000/199305 spectrum_queries [ERROR:] Cannot initialize for sequence: nQNSVPPSQTKSETSc[61], unknown mods may exist in spectrum 20240927_SW-KF_S2_total_Slot2-39_1_8060_diatracer.788856.788856.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nLGQDALGELIFLHc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_total_Slot2-39_1_8060_diatracer.790239.790239.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nELQQVTAGEAASIHc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_total_Slot2-39_1_8060_diatracer.791320.791320.2 [INFO:] Please specify modification and rerun PTMProphet ... ​ [INFO:] processed 142000/199305 spectrum_queries [ERROR:] Cannot initialize for sequence: nLTIAFQAKDVEGSTSPQIGDKc[61], unknown mods may exist in spectrum 20240927_SW-KF_S2_total_Slot2-39_1_8060_diatracer.793838.793838.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nQNQLFLFDLLSLLLMIQRc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_total_Slot2-39_1_8060_diatracer.795127.795127.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nLDEYSPARFDC[160]GDC[160]QLVEc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_total_Slot2-39_1_8060_diatracer.796169.796169.3 [INFO:] Please specify modification and rerun PTMProphet ... ​ [INFO:] processed 143000/199305 spectrum_queries [ERROR:] Cannot initialize for sequence: nAASTPAAPPPPGAPGPAPGPAGGAAAAAc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_total_Slot2-39_1_8060_diatracer.797479.797479.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nNFLIC[160]FLSSFSIc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_total_Slot2-39_1_8060_diatracer.797583.797583.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nVTISSRLVSSPC[160]RIVTSTYSc[61], unknown mods may exist in spectrum 20240927_SW-KF_S2_total_Slot2-39_1_8060_diatracer.798272.798272.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nISEGFELLNSGQSIRTVLTFc[61], unknown mods may exist in spectrum 20240927_SW-KF_S2_total_Slot2-39_1_8060_diatracer.800338.800338.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nFFILWYLGTGVTc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_total_Slot2-39_1_8060_diatracer.800480.800480.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nETEAAYESDIPEEc[61], unknown mods may exist in spectrum 20240927_SW-KF_S2_total_Slot2-39_1_8060_diatracer.801361.801361.2 [INFO:] Please specify modification and rerun PTMProphet ... ​ [INFO:] processed 144000/199305 spectrum_queries [ERROR:] Cannot initialize for sequence: nSATDADVVNSGWEGc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_total_Slot2-39_1_8060_diatracer.802095.802095.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nGGSATAAAVAASGGFGGGGSGASPGSGGGGGGGHKQPAc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_total_Slot2-39_1_8060_diatracer.802572.802572.4 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nLGQDALGELIFLHc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_total_Slot2-39_1_8060_diatracer.802807.802807.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nSSQLDTLAVELGQAc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_total_Slot2-39_1_8060_diatracer.803228.803228.2 [INFO:] Please specify modification and rerun PTMProphet ... ​ [INFO:] processed 145000/199305 spectrum_queries [ERROR:] Cannot initialize for sequence: nIDYSAAVIYD[158]FLAVD[158]DINGc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_total_Slot2-39_1_8060_diatracer.810710.810710.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nC[160]SVRLSVPVSEGYc[61], unknown mods may exist in spectrum 20240927_SW-KF_S2_total_Slot2-39_1_8060_diatracer.810715.810715.2 [INFO:] Please specify modification and rerun PTMProphet ... ​ [INFO:] processed 146000/199305 spectrum_queries [ERROR:] Cannot initialize for sequence: nLFLSQAGAGSTC[160]QINTSVC[160]Lc[61], unknown mods may exist in spectrum 20240927_SW-KF_S2_total_Slot2-39_1_8060_diatracer.816802.816802.4 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nIFPDDMINSHNTKc[61], unknown mods may exist in spectrum 20240927_SW-KF_S2_total_Slot2-39_1_8060_diatracer.817115.817115.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: n[43]MQSGLAGGGPPAGC[160]ASAc[61], unknown mods may exist in spectrum 20240927_SW-KF_S2_total_Slot2-39_1_8060_diatracer.817207.817207.3 [INFO:] Please specify modification and rerun PTMProphet ... ​ [INFO:] processed 147000/199305 spectrum_queries [ERROR:] Cannot initialize for sequence: nATLTRDFYLFPGNc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_total_Slot2-39_1_8060_diatracer.818400.818400.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nAGETEAPISALSSAHAc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_total_Slot2-39_1_8060_diatracer.818419.818419.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nDHLSPLSSSMPFWc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_total_Slot2-39_1_8060_diatracer.820191.820191.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nKDTDEVFSSc[61], unknown mods may exist in spectrum 20240927_SW-KF_S2_total_Slot2-39_1_8060_diatracer.822920.822920.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nGRNAVLGGQATc[61], unknown mods may exist in spectrum 20240927_SW-KF_S2_total_Slot2-39_1_8060_diatracer.823646.823646.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nLVIQSYFGKQILHc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_total_Slot2-39_1_8060_diatracer.823923.823923.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nTEEKTSSTDLSDIPAc[61], unknown mods may exist in spectrum 20240927_SW-KF_S2_total_Slot2-39_1_8060_diatracer.823939.823939.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nKAVAEELAKc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_total_Slot2-39_1_8060_diatracer.824048.824048.2 [INFO:] Please specify modification and rerun PTMProphet ... ​ [INFO:] processed 148000/199305 spectrum_queries [ERROR:] Cannot initialize for sequence: nSSSKSWKQIELDSc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_total_Slot2-39_1_8060_diatracer.824496.824496.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nLVIQSYFGKQILHc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_total_Slot2-39_1_8060_diatracer.826216.826216.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nSFGPAVIM[147]GNc[61], unknown mods may exist in spectrum 20240927_SW-KF_S2_total_Slot2-39_1_8060_diatracer.829026.829026.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nDHLSPLSSSMPFWc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_total_Slot2-39_1_8060_diatracer.829353.829353.3 [INFO:] Please specify modification and rerun PTMProphet ... ​ [INFO:] processed 149000/199305 spectrum_queries [ERROR:] Cannot initialize for sequence: nSWMSKDEGQPTPWc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_total_Slot2-39_1_8060_diatracer.830672.830672.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nDDLLHVQC[160]HRGETc[61], unknown mods may exist in spectrum 20240927_SW-KF_S2_total_Slot2-39_1_8060_diatracer.832857.832857.3 [INFO:] Please specify modification and rerun PTMProphet ... ​ [INFO:] processed 150000/199305 spectrum_queries [ERROR:] Cannot initialize for sequence: nAIEHADGGVAAGVAVLDNPYPVc[61], unknown mods may exist in spectrum 20240927_SW-KF_S2_total_Slot2-39_1_8060_diatracer.835336.835336.4 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nQNPSGFGTQAc[61], unknown mods may exist in spectrum 20240927_SW-KF_S2_total_Slot2-39_1_8060_diatracer.835488.835488.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nGASMRPASQSC[160]GGTLc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_total_Slot2-39_1_8060_diatracer.835778.835778.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nGRNAVLGGQATc[61], unknown mods may exist in spectrum 20240927_SW-KF_S2_total_Slot2-39_1_8060_diatracer.837422.837422.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nNSFYVALERVSHEc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_total_Slot2-39_1_8060_diatracer.837739.837739.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nQNPSGFGTQAc[61], unknown mods may exist in spectrum 20240927_SW-KF_S2_total_Slot2-39_1_8060_diatracer.837884.837884.2 [INFO:] Please specify modification and rerun PTMProphet ... ​ [INFO:] processed 151000/199305 spectrum_queries [ERROR:] Cannot initialize for sequence: nYVAFLGHLRSLGASGc[61], unknown mods may exist in spectrum 20240927_SW-KF_S2_total_Slot2-39_1_8060_diatracer.840995.840995.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nVEQLGILDKc[61], unknown mods may exist in spectrum 20240927_SW-KF_S2_total_Slot2-39_1_8060_diatracer.843036.843036.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nYVAFLGHLRSLGASGc[61], unknown mods may exist in spectrum 20240927_SW-KF_S2_total_Slot2-39_1_8060_diatracer.843295.843295.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nHSTVQHSYSc[61], unknown mods may exist in spectrum 20240927_SW-KF_S2_total_Slot2-39_1_8060_diatracer.844056.844056.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nILSNGSESIEMGEDc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_total_Slot2-39_1_8060_diatracer.844806.844806.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nPLPGDLGSVC[160]c[61], unknown mods may exist in spectrum 20240927_SW-KF_S2_total_Slot2-39_1_8060_diatracer.845646.845646.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nELSFTSAPFc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_total_Slot2-39_1_8060_diatracer.846407.846407.2 [INFO:] Please specify modification and rerun PTMProphet ... ​ [INFO:] processed 152000/199305 spectrum_queries [ERROR:] Cannot initialize for sequence: nFASKNTVFGc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_total_Slot2-39_1_8060_diatracer.849668.849668.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nFTPGTFTNQIQAAFc[61], unknown mods may exist in spectrum 20240927_SW-KF_S2_total_Slot2-39_1_8060_diatracer.849863.849863.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nSDEFYGNQSc[61], unknown mods may exist in spectrum 20240927_SW-KF_S2_total_Slot2-39_1_8060_diatracer.851379.851379.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nTGAVAGDNKGLc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_total_Slot2-39_1_8060_diatracer.851440.851440.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nKAVAEELAKc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_total_Slot2-39_1_8060_diatracer.851613.851613.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nDAVLKVVEEc[61], unknown mods may exist in spectrum 20240927_SW-KF_S2_total_Slot2-39_1_8060_diatracer.851872.851872.2 [INFO:] Please specify modification and rerun PTMProphet ... ​ [INFO:] processed 153000/199305 spectrum_queries [ERROR:] Cannot initialize for sequence: nNHLSSVPVGLPVDLQc[61], unknown mods may exist in spectrum 20240927_SW-KF_S2_total_Slot2-39_1_8060_diatracer.852978.852978.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nYSSGDQSDRc[61], unknown mods may exist in spectrum 20240927_SW-KF_S2_total_Slot2-39_1_8060_diatracer.854440.854440.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nLPLEVEKQLLMLSc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_total_Slot2-39_1_8060_diatracer.855176.855176.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nGGAGPHTASGASc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_total_Slot2-39_1_8060_diatracer.856542.856542.2 [INFO:] Please specify modification and rerun PTMProphet ... ​ [INFO:] processed 154000/199305 spectrum_queries [ERROR:] Cannot initialize for sequence: nGGAGPHTASGASc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_total_Slot2-39_1_8060_diatracer.858840.858840.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nDPIKYSQYc[61], unknown mods may exist in spectrum 20240927_SW-KF_S2_total_Slot2-39_1_8060_diatracer.858868.858868.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nIEPAGMSSHVc[61], unknown mods may exist in spectrum 20240927_SW-KF_S2_total_Slot2-39_1_8060_diatracer.859538.859538.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nLEEGVGPLPM[147]ADPMSc[61], unknown mods may exist in spectrum 20240927_SW-KF_S2_total_Slot2-39_1_8060_diatracer.859649.859649.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nMADQSGGGLSSc[61], unknown mods may exist in spectrum 20240927_SW-KF_S2_total_Slot2-39_1_8060_diatracer.861315.861315.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nFTTPGSTAPVAGLRSSc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_total_Slot2-39_1_8060_diatracer.862902.862902.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nKRTYLILETDTLEc[61], unknown mods may exist in spectrum 20240927_SW-KF_S2_total_Slot2-39_1_8060_diatracer.862917.862917.3 [INFO:] Please specify modification and rerun PTMProphet ... ​ [INFO:] processed 155000/199305 spectrum_queries [ERROR:] Cannot initialize for sequence: nDPIKYSQYc[61], unknown mods may exist in spectrum 20240927_SW-KF_S2_total_Slot2-39_1_8060_diatracer.863457.863457.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nNELGSSFHSc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_total_Slot2-39_1_8060_diatracer.863784.863784.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nDHLSPLSSSMPFWc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_total_Slot2-39_1_8060_diatracer.863808.863808.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nGFPAQEATAVc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_total_Slot2-39_1_8060_diatracer.864619.864619.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nDLHSFGAASNc[61], unknown mods may exist in spectrum 20240927_SW-KF_S2_total_Slot2-39_1_8060_diatracer.866273.866273.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nLTEASSSATYc[61], unknown mods may exist in spectrum 20240927_SW-KF_S2_total_Slot2-39_1_8060_diatracer.866416.866416.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nAEALTEPLNAc[61], unknown mods may exist in spectrum 20240927_SW-KF_S2_total_Slot2-39_1_8060_diatracer.866445.866445.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nDQPEAANGASAc[61], unknown mods may exist in spectrum 20240927_SW-KF_S2_total_Slot2-39_1_8060_diatracer.866548.866548.2 [INFO:] Please specify modification and rerun PTMProphet ... ​ [INFO:] processed 157000/199305 spectrum_queries [ERROR:] Cannot initialize for sequence: nLAEDAPNFDGPAAE[172]GQPGQc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_total_Slot2-39_1_8060_diatracer.876176.876176.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nFAPSQHLD[202]EYPQPLPPc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_total_Slot2-39_1_8060_diatracer.877092.877092.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nC[160]PNLEFVGLMTIGSFGHDc[61], unknown mods may exist in spectrum 20240927_SW-KF_S2_total_Slot2-39_1_8060_diatracer.879323.879323.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nDEM[147]EKQEEASAAEPVEASc[61], unknown mods may exist in spectrum 20240927_SW-KF_S2_total_Slot2-39_1_8060_diatracer.879661.879661.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nNGQFVVFGAATFGLFTTTGc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_total_Slot2-39_1_8060_diatracer.881594.881594.2 [INFO:] Please specify modification and rerun PTMProphet ... ​ [INFO:] processed 159000/199305 spectrum_queries [ERROR:] Cannot initialize for sequence: nPLNAFM[147]LYM[147]KEMc[61], unknown mods may exist in spectrum 20240927_SW-KF_S2_total_Slot2-39_1_8060_diatracer.890404.890404.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nSPNSSLGDFQSALNTGFLTKLLc[61], unknown mods may exist in spectrum 20240927_SW-KF_S2_total_Slot2-39_1_8060_diatracer.890783.890783.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nAGGALAAAGIQGGTSGPGAc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_total_Slot2-39_1_8060_diatracer.892932.892932.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nSPSDLLDASAVSATSRYIE[172]E[172]Qc[61], unknown mods may exist in spectrum 20240927_SW-KF_S2_total_Slot2-39_1_8060_diatracer.893071.893071.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nLQETVTPKQFLLIAIIMFLGc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_total_Slot2-39_1_8060_diatracer.893133.893133.3 [INFO:] Please specify modification and rerun PTMProphet ... ​ [INFO:] processed 160000/199305 spectrum_queries [ERROR:] Cannot initialize for sequence: nTLDMHTEPSVTVQTPARLAAAAc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_total_Slot2-39_1_8060_diatracer.895038.895038.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nPC[160]TSMHFQLPIQAc[61], unknown mods may exist in spectrum 20240927_SW-KF_S2_total_Slot2-39_1_8060_diatracer.895188.895188.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nLDISSLVSQIFNPLYNRQGEc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_total_Slot2-39_1_8060_diatracer.895454.895454.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nSRYM[147]ELYTYPPAc[61], unknown mods may exist in spectrum 20240927_SW-KF_S2_total_Slot2-39_1_8060_diatracer.896009.896009.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nILSLSWHPSGTHIAc[61], unknown mods may exist in spectrum 20240927_SW-KF_S2_total_Slot2-39_1_8060_diatracer.896512.896512.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nMVREFLAEFMSTYVMM[147]EPTc[61], unknown mods may exist in spectrum 20240927_SW-KF_S2_total_Slot2-39_1_8060_diatracer.897321.897321.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nPQNQNAC[160]SSEMFTc[61], unknown mods may exist in spectrum 20240927_SW-KF_S2_total_Slot2-39_1_8060_diatracer.898161.898161.2 [INFO:] Please specify modification and rerun PTMProphet ... ​ [INFO:] processed 161000/199305 spectrum_queries [ERROR:] Cannot initialize for sequence: nSPSDLLDASAVSATSRYIE[172]E[172]Qc[61], unknown mods may exist in spectrum 20240927_SW-KF_S2_total_Slot2-39_1_8060_diatracer.901004.901004.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nQID[158]ELSVGSDTIDLc[61], unknown mods may exist in spectrum 20240927_SW-KF_S2_total_Slot2-39_1_8060_diatracer.901641.901641.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nQLQSEQPQTAAARSc[61], unknown mods may exist in spectrum 20240927_SW-KF_S2_total_Slot2-39_1_8060_diatracer.901982.901982.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nAC[160]LAKGLAAAPSPNEc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_total_Slot2-39_1_8060_diatracer.902061.902061.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nMPGSHAGPITTFLPGc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_total_Slot2-39_1_8060_diatracer.902802.902802.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: n[43]NVSVLSYFDSAGATc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_total_Slot2-39_1_8060_diatracer.904468.904468.2 [INFO:] Please specify modification and rerun PTMProphet ... ​ [INFO:] processed 162000/199305 spectrum_queries [ERROR:] Cannot initialize for sequence: nEEISAQGPSQIVSSHPTIRMTc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_total_Slot2-39_1_8060_diatracer.906713.906713.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nQLSIIDMHC[160]VSNLISSM[147]VILTWQPPWc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_total_Slot2-39_1_8060_diatracer.907254.907254.4 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nEQIVGPLESPVEDSLIWC[160]LSc[61], unknown mods may exist in spectrum 20240927_SW-KF_S2_total_Slot2-39_1_8060_diatracer.909823.909823.3 [INFO:] Please specify modification and rerun PTMProphet ... ​ [INFO:] processed 163000/199305 spectrum_queries [ERROR:] Cannot initialize for sequence: nLADGQLQQAQIWGAc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_total_Slot2-39_1_8060_diatracer.911234.911234.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nQFSTASDHEQPGVSGc[61], unknown mods may exist in spectrum 20240927_SW-KF_S2_total_Slot2-39_1_8060_diatracer.915347.915347.2 [INFO:] Please specify modification and rerun PTMProphet ... ​ [INFO:] processed 164000/199305 spectrum_queries [ERROR:] Cannot initialize for sequence: nGQGQWAPTC[160]TLPGPc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_total_Slot2-39_1_8060_diatracer.918094.918094.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nTNVINPAYATESGRc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_total_Slot2-39_1_8060_diatracer.919042.919042.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: n[43]MPGGAEYAGPPGPHNAAM[147]ALSQYc[61], unknown mods may exist in spectrum 20240927_SW-KF_S2_total_Slot2-39_1_8060_diatracer.919344.919344.3 [INFO:] Please specify modification and rerun PTMProphet ... ​ [INFO:] processed 165000/199305 spectrum_queries [ERROR:] Cannot initialize for sequence: nSSAAAAAALDLSGRRGc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_total_Slot2-39_1_8060_diatracer.924178.924178.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nPAVPALLC[160]RHGQQLLRVLGSAc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_total_Slot2-39_1_8060_diatracer.926262.926262.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nLEAEFPPHHSQSTc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_total_Slot2-39_1_8060_diatracer.926482.926482.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nMVREFLAEFMSTYVMM[147]EPTc[61], unknown mods may exist in spectrum 20240927_SW-KF_S2_total_Slot2-39_1_8060_diatracer.927047.927047.3 [INFO:] Please specify modification and rerun PTMProphet ... ​ [INFO:] processed 166000/199305 spectrum_queries [ERROR:] Cannot initialize for sequence: nQARDGTSPIHQMGQc[61], unknown mods may exist in spectrum 20240927_SW-KF_S2_total_Slot2-39_1_8060_diatracer.928602.928602.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nGDLKC[160]HITANPFKc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_total_Slot2-39_1_8060_diatracer.929169.929169.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nAC[160]LAKGLAAAPSPNEc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_total_Slot2-39_1_8060_diatracer.929809.929809.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nSLPQTERIYFQVc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_total_Slot2-39_1_8060_diatracer.930320.930320.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nSPSDLLDASAVSATSRYIE[172]E[172]Qc[61], unknown mods may exist in spectrum 20240927_SW-KF_S2_total_Slot2-39_1_8060_diatracer.930732.930732.3 [INFO:] Please specify modification and rerun PTMProphet ... ​ [INFO:] processed 167000/199305 spectrum_queries [ERROR:] Cannot initialize for sequence: nIDEIQYVQGTINLc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_total_Slot2-39_1_8060_diatracer.933318.933318.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nHLSGQAEGLELLVLLLLLLTKc[61], unknown mods may exist in spectrum 20240927_SW-KF_S2_total_Slot2-39_1_8060_diatracer.933639.933639.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nAGGALAAAGIQGGTSGPGAc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_total_Slot2-39_1_8060_diatracer.934549.934549.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nIEQFSMVIGc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_total_Slot2-39_1_8060_diatracer.936119.936119.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nC[160]LVPQVVTDc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_total_Slot2-39_1_8060_diatracer.936699.936699.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nGASANWWNHc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_total_Slot2-39_1_8060_diatracer.936907.936907.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nFSAVALC[160]KAAc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_total_Slot2-39_1_8060_diatracer.937137.937137.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nELNGSDDALGVc[61], unknown mods may exist in spectrum 20240927_SW-KF_S2_total_Slot2-39_1_8060_diatracer.937345.937345.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nELNSGENHAEc[61], unknown mods may exist in spectrum 20240927_SW-KF_S2_total_Slot2-39_1_8060_diatracer.937544.937544.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nMTATTEVADDc[61], unknown mods may exist in spectrum 20240927_SW-KF_S2_total_Slot2-39_1_8060_diatracer.937819.937819.2 [INFO:] Please specify modification and rerun PTMProphet ... ​ [INFO:] processed 168000/199305 spectrum_queries [ERROR:] Cannot initialize for sequence: nQNDLTSVTEEAESTPc[61], unknown mods may exist in spectrum 20240927_SW-KF_S2_total_Slot2-39_1_8060_diatracer.938769.938769.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nLLSFIAWC[160]VLWTDc[61], unknown mods may exist in spectrum 20240927_SW-KF_S2_total_Slot2-39_1_8060_diatracer.938877.938877.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nC[160]TIAPAASAFLVELGAc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_total_Slot2-39_1_8060_diatracer.939112.939112.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nVVVSASALIAGLHQRAGPLARQc[61], unknown mods may exist in spectrum 20240927_SW-KF_S2_total_Slot2-39_1_8060_diatracer.939515.939515.4 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nMFTLDAGNNSc[61], unknown mods may exist in spectrum 20240927_SW-KF_S2_total_Slot2-39_1_8060_diatracer.941132.941132.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nPPDSYSGLGRc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_total_Slot2-39_1_8060_diatracer.942311.942311.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nTVVGQITVDMc[61], unknown mods may exist in spectrum 20240927_SW-KF_S2_total_Slot2-39_1_8060_diatracer.943183.943183.2 [INFO:] Please specify modification and rerun PTMProphet ... ​ [INFO:] processed 169000/199305 spectrum_queries [ERROR:] Cannot initialize for sequence: nAPAAEAVAEGASc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_total_Slot2-39_1_8060_diatracer.944527.944527.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nC[160]PGLGAGPARGAPGGALHc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_total_Slot2-39_1_8060_diatracer.944628.944628.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nDLHNTNIEPc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_total_Slot2-39_1_8060_diatracer.947330.947330.2 [INFO:] Please specify modification and rerun PTMProphet ... ​ [INFO:] processed 170000/199305 spectrum_queries [ERROR:] Cannot initialize for sequence: nTPMDLSSSSPc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_total_Slot2-39_1_8060_diatracer.950750.950750.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nIVITGDADIDHDQVVC[160]VRRc[61], unknown mods may exist in spectrum 20240927_SW-KF_S2_total_Slot2-39_1_8060_diatracer.950948.950948.4 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nPTPDKC[160]AADVKAPLEVAQEHc[61], unknown mods may exist in spectrum 20240927_SW-KF_S2_total_Slot2-39_1_8060_diatracer.953259.953259.4 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nLEEVKSLGFc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_total_Slot2-39_1_8060_diatracer.953343.953343.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nLQEVHGLVQc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_total_Slot2-39_1_8060_diatracer.953392.953392.2 [INFO:] Please specify modification and rerun PTMProphet ... ​ [INFO:] processed 171000/199305 spectrum_queries [ERROR:] Cannot initialize for sequence: nYQIYDLDSEAKQFc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_total_Slot2-39_1_8060_diatracer.954580.954580.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nLEEVKSLGFc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_total_Slot2-39_1_8060_diatracer.955761.955761.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nWPQPLLAMC[160]LEIRc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_total_Slot2-39_1_8060_diatracer.957094.957094.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nADGLAVIGVLMc[61], unknown mods may exist in spectrum 20240927_SW-KF_S2_total_Slot2-39_1_8060_diatracer.957605.957605.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nGPC[160]DAPAPEC[160]c[61], unknown mods may exist in spectrum 20240927_SW-KF_S2_total_Slot2-39_1_8060_diatracer.958326.958326.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nTLPGPSGQPSQEPIPC[160]c[61], unknown mods may exist in spectrum 20240927_SW-KF_S2_total_Slot2-39_1_8060_diatracer.959628.959628.3 [INFO:] Please specify modification and rerun PTMProphet ... ​ [INFO:] processed 172000/199305 spectrum_queries [ERROR:] Cannot initialize for sequence: nNGPYTGPC[160]GLc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_total_Slot2-39_1_8060_diatracer.960889.960889.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nAPTGSNGSEAAAc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_total_Slot2-39_1_8060_diatracer.960940.960940.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nC[160]PGLGAGPARGAPGGALHc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_total_Slot2-39_1_8060_diatracer.961639.961639.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nPEGGGGGQAAAAAc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_total_Slot2-39_1_8060_diatracer.962134.962134.2 [INFO:] Please specify modification and rerun PTMProphet ... ​ [INFO:] processed 173000/199305 spectrum_queries [ERROR:] Cannot initialize for sequence: nQGPPASPTASPEPPPPEc[61], unknown mods may exist in spectrum 20240927_SW-KF_S2_total_Slot2-39_1_8060_diatracer.966476.966476.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nEVTVSGGVSAANc[61], unknown mods may exist in spectrum 20240927_SW-KF_S2_total_Slot2-39_1_8060_diatracer.966677.966677.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nDSLIPPQSRc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_total_Slot2-39_1_8060_diatracer.967156.967156.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nVMNTFDYGANVEYPc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_total_Slot2-39_1_8060_diatracer.968842.968842.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nC[160]PGLGAGPARGAPGGALHc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_total_Slot2-39_1_8060_diatracer.968939.968939.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nTSPVTASDPAGPc[61], unknown mods may exist in spectrum 20240927_SW-KF_S2_total_Slot2-39_1_8060_diatracer.969265.969265.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nQQQYQQAQc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_total_Slot2-39_1_8060_diatracer.970166.970166.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nLEEVKSLGFc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_total_Slot2-39_1_8060_diatracer.970356.970356.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nLQEVHGLVQc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_total_Slot2-39_1_8060_diatracer.970406.970406.2 [INFO:] Please specify modification and rerun PTMProphet ... ​ [INFO:] processed 174000/199305 spectrum_queries [ERROR:] Cannot initialize for sequence: nAEEAAKGNGLPLAKEATc[61], unknown mods may exist in spectrum 20240927_SW-KF_S2_total_Slot2-39_1_8060_diatracer.971729.971729.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nTVVGQITVDMc[61], unknown mods may exist in spectrum 20240927_SW-KF_S2_total_Slot2-39_1_8060_diatracer.972359.972359.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nC[160]AFQSATAC[160]AAPASTAGc[61], unknown mods may exist in spectrum 20240927_SW-KF_S2_total_Slot2-39_1_8060_diatracer.973397.973397.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nNFILDQETLPSQRc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_total_Slot2-39_1_8060_diatracer.974386.974386.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nIEDNLPAGEEc[61], unknown mods may exist in spectrum 20240927_SW-KF_S2_total_Slot2-39_1_8060_diatracer.975809.975809.2 [INFO:] Please specify modification and rerun PTMProphet ... ​ [INFO:] processed 175000/199305 spectrum_queries [ERROR:] Cannot initialize for sequence: nGAEEPWMGPFPGQQGc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_total_Slot2-39_1_8060_diatracer.977780.977780.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nAEPQSLDGVDc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_total_Slot2-39_1_8060_diatracer.977974.977974.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: n[43]SPGASLWSDIPDGAAAAc[61], unknown mods may exist in spectrum 20240927_SW-KF_S2_total_Slot2-39_1_8060_diatracer.979907.979907.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nILDLYALSKc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_total_Slot2-39_1_8060_diatracer.980371.980371.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nASVLEAAVAATATSEMAc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_total_Slot2-39_1_8060_diatracer.980488.980488.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nRC[160]SLSVAQEc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_total_Slot2-39_1_8060_diatracer.980980.980980.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nGLPSSSPDASTAc[61], unknown mods may exist in spectrum 20240927_SW-KF_S2_total_Slot2-39_1_8060_diatracer.981095.981095.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nLDELEEATKc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_total_Slot2-39_1_8060_diatracer.981168.981168.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nSGLYPTGSSGSc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_total_Slot2-39_1_8060_diatracer.981578.981578.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nAAAGDLGGMVFc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_total_Slot2-39_1_8060_diatracer.981711.981711.2 [INFO:] Please specify modification and rerun PTMProphet ... ​ [INFO:] processed 176000/199305 spectrum_queries [ERROR:] Cannot initialize for sequence: nILDTERMLAc[61], unknown mods may exist in spectrum 20240927_SW-KF_S2_total_Slot2-39_1_8060_diatracer.982190.982190.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nC[160]IIVM[147]PEKM[147]SSEKc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_total_Slot2-39_1_8060_diatracer.982570.982570.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nIPASQTSVPFDHLGKc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_total_Slot2-39_1_8060_diatracer.982832.982832.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nTLKSSSLFFc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_total_Slot2-39_1_8060_diatracer.982852.982852.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nKVAPGGQC[160]VPITDSQQPGRLc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_total_Slot2-39_1_8060_diatracer.984343.984343.4 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nELNSGENHAEc[61], unknown mods may exist in spectrum 20240927_SW-KF_S2_total_Slot2-39_1_8060_diatracer.986171.986171.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nAAAGDLGGMVFc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_total_Slot2-39_1_8060_diatracer.986578.986578.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nNLGGIFLKGPHDAEVc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_total_Slot2-39_1_8060_diatracer.987035.987035.3 [INFO:] Please specify modification and rerun PTMProphet ... ​ [INFO:] processed 177000/199305 spectrum_queries [ERROR:] Cannot initialize for sequence: nPEGGGGGQAAAAAc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_total_Slot2-39_1_8060_diatracer.988850.988850.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nLEEVKSLGFc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_total_Slot2-39_1_8060_diatracer.989456.989456.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nELNGSDDALGVc[61], unknown mods may exist in spectrum 20240927_SW-KF_S2_total_Slot2-39_1_8060_diatracer.990847.990847.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nAFRRDSHLAQHQRc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_total_Slot2-39_1_8060_diatracer.991200.991200.3 [INFO:] Please specify modification and rerun PTMProphet ... ​ [INFO:] processed 179000/199305 spectrum_queries [ERROR:] Cannot initialize for sequence: nWPLTETSIQGDAVKSGNTAc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_total_Slot2-39_1_8060_diatracer.1000358.1000358.2 [INFO:] Please specify modification and rerun PTMProphet ... ​ [INFO:] processed 180000/199305 spectrum_queries [ERROR:] Cannot initialize for sequence: nLLATNGTPLPc[61], unknown mods may exist in spectrum 20240927_SW-KF_S2_total_Slot2-39_1_8060_diatracer.1007810.1007810.1 [INFO:] Please specify modification and rerun PTMProphet ... ​ [INFO:] processed 181000/199305 spectrum_queries [ERROR:] Cannot initialize for sequence: nADILEEGLLC[160]LVVC[160]C[160]LLRTAc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_total_Slot2-39_1_8060_diatracer.1011801.1011801.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nENDLVSGYHPRAVGLGDVEDAASc[61], unknown mods may exist in spectrum 20240927_SW-KF_S2_total_Slot2-39_1_8060_diatracer.1012025.1012025.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nAQLSPEASTEELIHc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_total_Slot2-39_1_8060_diatracer.1012147.1012147.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nQIEDTVLYGYYTNc[61], unknown mods may exist in spectrum 20240927_SW-KF_S2_total_Slot2-39_1_8060_diatracer.1015944.1015944.2 [INFO:] Please specify modification and rerun PTMProphet ... ​ [INFO:] processed 182000/199305 spectrum_queries [ERROR:] Cannot initialize for sequence: nAYEIVDSHLEVPSLPSHKWAEc[61], unknown mods may exist in spectrum 20240927_SW-KF_S2_total_Slot2-39_1_8060_diatracer.1016576.1016576.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nQIEDTVLYGYYTNc[61], unknown mods may exist in spectrum 20240927_SW-KF_S2_total_Slot2-39_1_8060_diatracer.1017792.1017792.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nATAGEPSPHGQVSSPPc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_total_Slot2-39_1_8060_diatracer.1020936.1020936.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nLGAAVAAAGWGRRATAAc[61], unknown mods may exist in spectrum 20240927_SW-KF_S2_total_Slot2-39_1_8060_diatracer.1021390.1021390.2 [INFO:] Please specify modification and rerun PTMProphet ... ​ [INFO:] processed 183000/199305 spectrum_queries [ERROR:] Cannot initialize for sequence: nAITIAGIPQSIIE[172]C[160]c[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_total_Slot2-39_1_8060_diatracer.1023439.1023439.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nPGQPSGGAPKAAAAETGEc[61], unknown mods may exist in spectrum 20240927_SW-KF_S2_total_Slot2-39_1_8060_diatracer.1024164.1024164.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nHRAAFSVLSLGAHSVc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_total_Slot2-39_1_8060_diatracer.1024255.1024255.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nSLC[160]AVFGGGTQLTVLc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_total_Slot2-39_1_8060_diatracer.1024994.1024994.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nPAPPPPPPPQPQASATGAADPGPEPc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_total_Slot2-39_1_8060_diatracer.1025243.1025243.3 [INFO:] Please specify modification and rerun PTMProphet ... ​ [INFO:] processed 184000/199305 spectrum_queries [ERROR:] Cannot initialize for sequence: nEPFAVTDEIFSLDAc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_total_Slot2-39_1_8060_diatracer.1031516.1031516.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nYQSLAMAANHGPPPGc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_total_Slot2-39_1_8060_diatracer.1031778.1031778.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nAQSISTTSNNSMGEKc[61], unknown mods may exist in spectrum 20240927_SW-KF_S2_total_Slot2-39_1_8060_diatracer.1031861.1031861.2 [INFO:] Please specify modification and rerun PTMProphet ... ​ [INFO:] processed 185000/199305 spectrum_queries [ERROR:] Cannot initialize for sequence: nFC[160]LLSSSLAHQGDPGc[61], unknown mods may exist in spectrum 20240927_SW-KF_S2_total_Slot2-39_1_8060_diatracer.1034977.1034977.2 [INFO:] Please specify modification and rerun PTMProphet ... ​ [INFO:] processed 186000/199305 spectrum_queries [ERROR:] Cannot initialize for sequence: nDELHIVEAEAM[147]NYc[61], unknown mods may exist in spectrum 20240927_SW-KF_S2_total_Slot2-39_1_8060_diatracer.1042945.1042945.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nMAVISLSAHQFPTLc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_total_Slot2-39_1_8060_diatracer.1043258.1043258.2 [INFO:] Please specify modification and rerun PTMProphet ... ​ [INFO:] processed 187000/199305 spectrum_queries [ERROR:] Cannot initialize for sequence: nSGAIVPQASPLSRSPGAc[61], unknown mods may exist in spectrum 20240927_SW-KF_S2_total_Slot2-39_1_8060_diatracer.1046440.1046440.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nFTVYIPDNYPDGDc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_total_Slot2-39_1_8060_diatracer.1046943.1046943.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nLAATNALLNSLE[172]FTc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_total_Slot2-39_1_8060_diatracer.1046994.1046994.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nYADLPGRPFEPLLATDGGEVTSAc[61], unknown mods may exist in spectrum 20240927_SW-KF_S2_total_Slot2-39_1_8060_diatracer.1047177.1047177.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nATDLPFFVTMATVSGc[61], unknown mods may exist in spectrum 20240927_SW-KF_S2_total_Slot2-39_1_8060_diatracer.1048528.1048528.2 [INFO:] Please specify modification and rerun PTMProphet ... ​ [INFO:] processed 188000/199305 spectrum_queries [ERROR:] Cannot initialize for sequence: nNTSALPC[160]KMWGMPGc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_total_Slot2-39_1_8060_diatracer.1051805.1051805.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nVC[160]APVLAKPGVISVMGTc[61], unknown mods may exist in spectrum 20240927_SW-KF_S2_total_Slot2-39_1_8060_diatracer.1053092.1053092.3 [INFO:] Please specify modification and rerun PTMProphet ... ​ [INFO:] processed 189000/199305 spectrum_queries [ERROR:] Cannot initialize for sequence: nLQDAAGHEQC[160]c[61], unknown mods may exist in spectrum 20240927_SW-KF_S2_total_Slot2-39_1_8060_diatracer.1055865.1055865.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nGGEASGTSDGGPPc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_total_Slot2-39_1_8060_diatracer.1056136.1056136.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nVEEHSDTPAIc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_total_Slot2-39_1_8060_diatracer.1056863.1056863.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nLDE[216]NVHTDNc[61], unknown mods may exist in spectrum 20240927_SW-KF_S2_total_Slot2-39_1_8060_diatracer.1059117.1059117.2 [INFO:] Please specify modification and rerun PTMProphet ... ​ [INFO:] processed 190000/199305 spectrum_queries [ERROR:] Cannot initialize for sequence: nQLAELETEDGMQESPc[61], unknown mods may exist in spectrum 20240927_SW-KF_S2_total_Slot2-39_1_8060_diatracer.1062698.1062698.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nSHPSTLDQMEc[61], unknown mods may exist in spectrum 20240927_SW-KF_S2_total_Slot2-39_1_8060_diatracer.1064266.1064266.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nC[160]QFGAEIITAESYSLc[61], unknown mods may exist in spectrum 20240927_SW-KF_S2_total_Slot2-39_1_8060_diatracer.1065525.1065525.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nQTPPLASVEMc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_total_Slot2-39_1_8060_diatracer.1065813.1065813.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nM[147]FDIEDLDLYEPAEc[61], unknown mods may exist in spectrum 20240927_SW-KF_S2_total_Slot2-39_1_8060_diatracer.1066205.1066205.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nYLC[160]SC[160]FC[160]NLLQTEc[61], unknown mods may exist in spectrum 20240927_SW-KF_S2_total_Slot2-39_1_8060_diatracer.1066425.1066425.3 [INFO:] Please specify modification and rerun PTMProphet ... ​ [INFO:] processed 191000/199305 spectrum_queries [ERROR:] Cannot initialize for sequence: nARGIPHRFAGHESYQc[61], unknown mods may exist in spectrum 20240927_SW-KF_S2_total_Slot2-39_1_8060_diatracer.1069271.1069271.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nGEIGPMGIPGPQGPPGPHc[61], unknown mods may exist in spectrum 20240927_SW-KF_S2_total_Slot2-39_1_8060_diatracer.1070937.1070937.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nVLIKSLQWEc[61], unknown mods may exist in spectrum 20240927_SW-KF_S2_total_Slot2-39_1_8060_diatracer.1071110.1071110.2 [INFO:] Please specify modification and rerun PTMProphet ... ​ [INFO:] processed 192000/199305 spectrum_queries [ERROR:] Cannot initialize for sequence: nLDE[216]NVHTDNc[61], unknown mods may exist in spectrum 20240927_SW-KF_S2_total_Slot2-39_1_8060_diatracer.1074617.1074617.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nLLDQMETPLc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_total_Slot2-39_1_8060_diatracer.1075560.1075560.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nQAVAQLEDQAc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_total_Slot2-39_1_8060_diatracer.1076159.1076159.2 [INFO:] Please specify modification and rerun PTMProphet ... ​ [INFO:] processed 193000/199305 spectrum_queries [ERROR:] Cannot initialize for sequence: nALGVGSQAATSADLIGAGQc[61], unknown mods may exist in spectrum 20240927_SW-KF_S2_total_Slot2-39_1_8060_diatracer.1078386.1078386.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nDLAQELDRDc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_total_Slot2-39_1_8060_diatracer.1078688.1078688.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nDPDRNLIEVSNYISSc[61], unknown mods may exist in spectrum 20240927_SW-KF_S2_total_Slot2-39_1_8060_diatracer.1079641.1079641.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nRILEDLSIDAc[61], unknown mods may exist in spectrum 20240927_SW-KF_S2_total_Slot2-39_1_8060_diatracer.1079821.1079821.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nAAVGC[160]SLSNGGEc[61], unknown mods may exist in spectrum 20240927_SW-KF_S2_total_Slot2-39_1_8060_diatracer.1081351.1081351.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nMQEQEIGFISKYNEc[61], unknown mods may exist in spectrum 20240927_SW-KF_S2_total_Slot2-39_1_8060_diatracer.1081805.1081805.3 [INFO:] Please specify modification and rerun PTMProphet ... ​ [INFO:] processed 194000/199305 spectrum_queries [ERROR:] Cannot initialize for sequence: nASLALPGPVSSLc[61], unknown mods may exist in spectrum 20240927_SW-KF_S2_total_Slot2-39_1_8060_diatracer.1083772.1083772.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nASVYQTIFSTc[61], unknown mods may exist in spectrum 20240927_SW-KF_S2_total_Slot2-39_1_8060_diatracer.1083923.1083923.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nTTSSRNSPTMc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_total_Slot2-39_1_8060_diatracer.1084221.1084221.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nYLDMDSPLGSc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_total_Slot2-39_1_8060_diatracer.1084983.1084983.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nIFYPEIEEVQALDDc[61], unknown mods may exist in spectrum 20240927_SW-KF_S2_total_Slot2-39_1_8060_diatracer.1085784.1085784.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nISQPQEPELMNANPSPPPSPSc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_total_Slot2-39_1_8060_diatracer.1086257.1086257.4 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nEDLSSNC[160]PGPTSADHDc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_total_Slot2-39_1_8060_diatracer.1087963.1087963.3 [INFO:] Please specify modification and rerun PTMProphet ... ​ [INFO:] processed 195000/199305 spectrum_queries [ERROR:] Cannot initialize for sequence: nAGVGSGEGAGSVGPc[61], unknown mods may exist in spectrum 20240927_SW-KF_S2_total_Slot2-39_1_8060_diatracer.1090883.1090883.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nSPQC[160]SNPGLC[160]VQPHHc[61], unknown mods may exist in spectrum 20240927_SW-KF_S2_total_Slot2-39_1_8060_diatracer.1092439.1092439.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nSMAASGNLGHTPFVDELc[61], unknown mods may exist in spectrum 20240927_SW-KF_S2_total_Slot2-39_1_8060_diatracer.1093244.1093244.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nSLALM[147]LSSTSFVTSVAc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_total_Slot2-39_1_8060_diatracer.1093450.1093450.3 [INFO:] Please specify modification and rerun PTMProphet ... ​ [INFO:] processed 196000/199305 spectrum_queries [ERROR:] Cannot initialize for sequence: nLDE[216]NVHTDNc[61], unknown mods may exist in spectrum 20240927_SW-KF_S2_total_Slot2-39_1_8060_diatracer.1095289.1095289.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nPSFLTIASFSc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_total_Slot2-39_1_8060_diatracer.1096599.1096599.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nMVNGGTVLC[160]Kc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_total_Slot2-39_1_8060_diatracer.1099470.1099470.2 [INFO:] Please specify modification and rerun PTMProphet ... ​ [INFO:] processed 197000/199305 spectrum_queries [ERROR:] Cannot initialize for sequence: nPSFLTIASFSc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_total_Slot2-39_1_8060_diatracer.1101771.1101771.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nGWIGQHIQEc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_total_Slot2-39_1_8060_diatracer.1101788.1101788.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nQILALTGWGYc[61], unknown mods may exist in spectrum 20240927_SW-KF_S2_total_Slot2-39_1_8060_diatracer.1102038.1102038.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nGAGAISNFLPNNGRQFc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_total_Slot2-39_1_8060_diatracer.1102388.1102388.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nDAVLLLFANKc[61], unknown mods may exist in spectrum 20240927_SW-KF_S2_total_Slot2-39_1_8060_diatracer.1103831.1103831.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nTPSTMPWVALc[61], unknown mods may exist in spectrum 20240927_SW-KF_S2_total_Slot2-39_1_8060_diatracer.1103974.1103974.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nEFDILLGQHNDEMQc[61], unknown mods may exist in spectrum 20240927_SW-KF_S2_total_Slot2-39_1_8060_diatracer.1104273.1104273.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nGNVTEEFVWc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_total_Slot2-39_1_8060_diatracer.1104887.1104887.2 [INFO:] Please specify modification and rerun PTMProphet ... ​ [INFO:] processed 198000/199305 spectrum_queries [ERROR:] Cannot initialize for sequence: nIHDVSAIIEQc[61], unknown mods may exist in spectrum 20240927_SW-KF_S2_total_Slot2-39_1_8060_diatracer.1104971.1104971.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nNEISGTLEDDFLKAKc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_total_Slot2-39_1_8060_diatracer.1105323.1105323.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nFTAKLSQFC[160]c[61], unknown mods may exist in spectrum 20240927_SW-KF_S2_total_Slot2-39_1_8060_diatracer.1106583.1106583.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nGVGPGAGPGAGDGTc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_total_Slot2-39_1_8060_diatracer.1106705.1106705.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nVNSPVAAFC[160]Lc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_total_Slot2-39_1_8060_diatracer.1107270.1107270.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nPGGGGVGPGPGAAGPMLGGVVc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_total_Slot2-39_1_8060_diatracer.1110261.1110261.3 [INFO:] Please specify modification and rerun PTMProphet ... ​ [INFO:] processed 199000/199305 spectrum_queries [INFO:] done ... [INFO:] Computing EM Models ... [INFO:] Iterating PTM Model: ....5...done [INFO:] done ... [INFO:] done ... [INFO:] Creating 1 threads [INFO:] Wait for threads to finish ... [INFO:] Reading file interact-20240927_SW-KF_S2_total_Slot2-39_1_8060_diatracer.pep.xml ... [ERROR:] Cannot initialize for sequence: nPSVTFGSVHPSDVLDMPVDPc[61], unknown mods may exist in spectrum 20240927_SW-KF_S2_total_Slot2-39_1_8060_diatracer.01101.01101.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nSAPTSLQEEEM[147]PMKQVQNc[61], unknown mods may exist in spectrum 20240927_SW-KF_S2_total_Slot2-39_1_8060_diatracer.01215.01215.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nELAGAGSDGGGGNELPAEATGEAc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_total_Slot2-39_1_8060_diatracer.03908.03908.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nTNGKEPELLEPIPYEFMAc[61], unknown mods may exist in spectrum 20240927_SW-KF_S2_total_Slot2-39_1_8060_diatracer.04611.04611.2 [INFO:] Please specify modification and rerun PTMProphet ... ​ [INFO:] written 1000/199305 spectrum_queries [ERROR:] Cannot initialize for sequence: nFQGSQGPESSAQLDVGIWTc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_total_Slot2-39_1_8060_diatracer.06173.06173.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nSVLEDFFTATEGQYQPQPc[61], unknown mods may exist in spectrum 20240927_SW-KF_S2_total_Slot2-39_1_8060_diatracer.06887.06887.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nEDLISAFGTDDQTEIYFDc[61], unknown mods may exist in spectrum 20240927_SW-KF_S2_total_Slot2-39_1_8060_diatracer.07128.07128.2 [INFO:] Please specify modification and rerun PTMProphet ... ​ [INFO:] written 3000/199305 spectrum_queries [ERROR:] Cannot initialize for sequence: nELSILSEASGISSTQSc[61], unknown mods may exist in spectrum 20240927_SW-KF_S2_total_Slot2-39_1_8060_diatracer.17011.17011.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nDEVESIFPDFFAC[160]c[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_total_Slot2-39_1_8060_diatracer.17305.17305.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nLGGETGVQTSVTEAMPc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_total_Slot2-39_1_8060_diatracer.18814.18814.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nFSPPPPGLIGPPANTSQQLMFPDGc[61], unknown mods may exist in spectrum 20240927_SW-KF_S2_total_Slot2-39_1_8060_diatracer.19240.19240.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nVQAAVGTSAAPVPSDNHc[61], unknown mods may exist in spectrum 20240927_SW-KF_S2_total_Slot2-39_1_8060_diatracer.20557.20557.2 [INFO:] Please specify modification and rerun PTMProphet ... ​ [INFO:] written 4000/199305 spectrum_queries [ERROR:] Cannot initialize for sequence: nFSPPPPGLIGPPANTSQQLMFPDGc[61], unknown mods may exist in spectrum 20240927_SW-KF_S2_total_Slot2-39_1_8060_diatracer.22606.22606.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nQELLEALTKHFQDc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_total_Slot2-39_1_8060_diatracer.23907.23907.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nQDLPNAMNAAEITDKc[61], unknown mods may exist in spectrum 20240927_SW-KF_S2_total_Slot2-39_1_8060_diatracer.26144.26144.2 [INFO:] Please specify modification and rerun PTMProphet ... ​ [INFO:] written 5000/199305 spectrum_queries [ERROR:] Cannot initialize for sequence: nPTASVADIIVQSGAQFc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_total_Slot2-39_1_8060_diatracer.29983.29983.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nLLM[147]AVENAQGFEGVDc[61], unknown mods may exist in spectrum 20240927_SW-KF_S2_total_Slot2-39_1_8060_diatracer.30361.30361.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nLQGLEDGAGAGPAENAASc[61], unknown mods may exist in spectrum 20240927_SW-KF_S2_total_Slot2-39_1_8060_diatracer.31067.31067.2 [INFO:] Please specify modification and rerun PTMProphet ... ​ [INFO:] written 6000/199305 spectrum_queries [ERROR:] Cannot initialize for sequence: nQPPPAEAGAVNRTEAAc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_total_Slot2-39_1_8060_diatracer.35701.35701.2 [INFO:] Please specify modification and rerun PTMProphet ... ​ [INFO:] written 8000/199305 spectrum_queries [ERROR:] Cannot initialize for sequence: nQPPPAEAGAVNRTEAAc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_total_Slot2-39_1_8060_diatracer.46072.46072.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nEPGAVGEALLMNDLRc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_total_Slot2-39_1_8060_diatracer.47815.47815.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nNLMGLTLNIDGFMEISEETSLTc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_total_Slot2-39_1_8060_diatracer.48153.48153.3 [INFO:] Please specify modification and rerun PTMProphet ... ​ [INFO:] written 10000/199305 spectrum_queries [ERROR:] Cannot initialize for sequence: nSFAPSGSC[160]DC[160]LSGPLHC[160]C[160]DGTTc[61], unknown mods may exist in spectrum 20240927_SW-KF_S2_total_Slot2-39_1_8060_diatracer.54609.54609.4 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nKRPAAAQWSELAAAAAAAc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_total_Slot2-39_1_8060_diatracer.55595.55595.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nAAGAGGGAAAAMAAAAc[61], unknown mods may exist in spectrum 20240927_SW-KF_S2_total_Slot2-39_1_8060_diatracer.57065.57065.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nEQEGPEPGGGEAc[61], unknown mods may exist in spectrum 20240927_SW-KF_S2_total_Slot2-39_1_8060_diatracer.58987.58987.2 [INFO:] Please specify modification and rerun PTMProphet ... ​ [INFO:] written 11000/199305 spectrum_queries [ERROR:] Cannot initialize for sequence: nPATTPARPC[160]TTc[61], unknown mods may exist in spectrum 20240927_SW-KF_S2_total_Slot2-39_1_8060_diatracer.60387.60387.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nQEKLITEYGVGRTPYc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_total_Slot2-39_1_8060_diatracer.60756.60756.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nYQPVYPVVGGFVM[147]AAAAc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_total_Slot2-39_1_8060_diatracer.60818.60818.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nDGLLFLYGGPLGLGLLLQLLQMc[61], unknown mods may exist in spectrum 20240927_SW-KF_S2_total_Slot2-39_1_8060_diatracer.61753.61753.4 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nVTNGSVE[172]PQGE[172]WEGAVc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_total_Slot2-39_1_8060_diatracer.62950.62950.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nFLNESGSVVQAc[61], unknown mods may exist in spectrum 20240927_SW-KF_S2_total_Slot2-39_1_8060_diatracer.64205.64205.2 [INFO:] Please specify modification and rerun PTMProphet ... ​ [INFO:] written 12000/199305 spectrum_queries [ERROR:] Cannot initialize for sequence: nQMSSPDIPNPNSLSTANc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_total_Slot2-39_1_8060_diatracer.69365.69365.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nYGGQAQLLLVC[160]LVLVPLLTQPAc[61], unknown mods may exist in spectrum 20240927_SW-KF_S2_total_Slot2-39_1_8060_diatracer.70210.70210.4 [INFO:] Please specify modification and rerun PTMProphet ... ​ [INFO:] written 13000/199305 spectrum_queries [ERROR:] Cannot initialize for sequence: nVQAILLPQPPVc[61], unknown mods may exist in spectrum 20240927_SW-KF_S2_total_Slot2-39_1_8060_diatracer.71067.71067.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nLPGVGSGHTWKc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_total_Slot2-39_1_8060_diatracer.71372.71372.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nEAAPQPWTGDKc[61], unknown mods may exist in spectrum 20240927_SW-KF_S2_total_Slot2-39_1_8060_diatracer.71895.71895.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nRGFLSSSSLHGHMQVHc[61], unknown mods may exist in spectrum 20240927_SW-KF_S2_total_Slot2-39_1_8060_diatracer.73170.73170.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nEAIAQLREKHLEAEAc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_total_Slot2-39_1_8060_diatracer.75139.75139.3 [INFO:] Please specify modification and rerun PTMProphet ... ​ [INFO:] written 14000/199305 spectrum_queries [ERROR:] Cannot initialize for sequence: nSWSWPEVAVC[160]EVEGFc[61], unknown mods may exist in spectrum 20240927_SW-KF_S2_total_Slot2-39_1_8060_diatracer.76063.76063.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nNYKSSGTVVLAc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_total_Slot2-39_1_8060_diatracer.79319.79319.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nEGLLC[160]ASSPASC[160]C[160]HVIc[61], unknown mods may exist in spectrum 20240927_SW-KF_S2_total_Slot2-39_1_8060_diatracer.80468.80468.3 [INFO:] Please specify modification and rerun PTMProphet ... ​ [INFO:] written 15000/199305 spectrum_queries [ERROR:] Cannot initialize for sequence: nLEVEANNAFDQYRDLc[61], unknown mods may exist in spectrum 20240927_SW-KF_S2_total_Slot2-39_1_8060_diatracer.81800.81800.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nM[147]AILSVRADFC[160]QAQHSIFADKc[61], unknown mods may exist in spectrum 20240927_SW-KF_S2_total_Slot2-39_1_8060_diatracer.82229.82229.4 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nETKGAGLQGLGDHLQEVPSSQC[160]Kc[61], unknown mods may exist in spectrum 20240927_SW-KF_S2_total_Slot2-39_1_8060_diatracer.82468.82468.4 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nYPKEGAHIGTHQTLHSc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_total_Slot2-39_1_8060_diatracer.82552.82552.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nWMGWKDRWGQEVISc[61], unknown mods may exist in spectrum 20240927_SW-KF_S2_total_Slot2-39_1_8060_diatracer.83711.83711.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nC[160]SLVVLAM[147]LLAFPSAMc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_total_Slot2-39_1_8060_diatracer.83971.83971.3 [INFO:] Please specify modification and rerun PTMProphet ... ​ [INFO:] written 16000/199305 spectrum_queries [ERROR:] Cannot initialize for sequence: nISGNVNEQHEAc[61], unknown mods may exist in spectrum 20240927_SW-KF_S2_total_Slot2-39_1_8060_diatracer.87668.87668.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nATAAFSNVGTAIc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_total_Slot2-39_1_8060_diatracer.89029.89029.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nGSDGLNPWSEKPTREAc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_total_Slot2-39_1_8060_diatracer.89270.89270.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nFTNGIYHQRc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_total_Slot2-39_1_8060_diatracer.89873.89873.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nLAAGQGAGAGQGGGAGGGLGGSGAc[61], unknown mods may exist in spectrum 20240927_SW-KF_S2_total_Slot2-39_1_8060_diatracer.90711.90711.3 [INFO:] Please specify modification and rerun PTMProphet ... ​ [INFO:] written 17000/199305 spectrum_queries [ERROR:] Cannot initialize for sequence: nGSDGLNPWSEKPTREAc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_total_Slot2-39_1_8060_diatracer.91905.91905.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nASGPGPC[160]SGGGAAAAc[61], unknown mods may exist in spectrum 20240927_SW-KF_S2_total_Slot2-39_1_8060_diatracer.92175.92175.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nVPDEVSFADADWSD[158]SDGAAAAAAAc[61], unknown mods may exist in spectrum 20240927_SW-KF_S2_total_Slot2-39_1_8060_diatracer.93446.93446.4 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nFHHPAQGLC[160]Pc[61], unknown mods may exist in spectrum 20240927_SW-KF_S2_total_Slot2-39_1_8060_diatracer.93795.93795.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nALGVGSQAATSAD[202]LIGAGQc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_total_Slot2-39_1_8060_diatracer.95662.95662.3 [INFO:] Please specify modification and rerun PTMProphet ... ​ [INFO:] written 18000/199305 spectrum_queries [ERROR:] Cannot initialize for sequence: nSQVASSAAVAARTADLSEc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_total_Slot2-39_1_8060_diatracer.96940.96940.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nIHGGGINTLDIEPVEGRc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_total_Slot2-39_1_8060_diatracer.98314.98314.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nSSGVPC[160]AC[160]C[160]VPLRTGQc[61], unknown mods may exist in spectrum 20240927_SW-KF_S2_total_Slot2-39_1_8060_diatracer.98662.98662.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nSPLLPAASQLTAc[61], unknown mods may exist in spectrum 20240927_SW-KF_S2_total_Slot2-39_1_8060_diatracer.99421.99421.2 [INFO:] Please specify modification and rerun PTMProphet ... ​ [INFO:] written 19000/199305 spectrum_queries [ERROR:] Cannot initialize for sequence: nALSASHTDLAHc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_total_Slot2-39_1_8060_diatracer.102210.102210.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nAPPSSSVTGAHVAc[61], unknown mods may exist in spectrum 20240927_SW-KF_S2_total_Slot2-39_1_8060_diatracer.102715.102715.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nVEGLTFQQNSLNWMKKLSPRc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_total_Slot2-39_1_8060_diatracer.103404.103404.4 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nQPPNPGPGAQQPGPPYYc[61], unknown mods may exist in spectrum 20240927_SW-KF_S2_total_Slot2-39_1_8060_diatracer.104367.104367.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nHSSDASSLLPQc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_total_Slot2-39_1_8060_diatracer.105378.105378.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nVPGASSGWGPTLAc[61], unknown mods may exist in spectrum 20240927_SW-KF_S2_total_Slot2-39_1_8060_diatracer.106196.106196.2 [INFO:] Please specify modification and rerun PTMProphet ... ​ [INFO:] written 20000/199305 spectrum_queries [ERROR:] Cannot initialize for sequence: nENAAATFLPLSSEPSPPc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_total_Slot2-39_1_8060_diatracer.107448.107448.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nSYNLASEVTGSSNLTQNc[61], unknown mods may exist in spectrum 20240927_SW-KF_S2_total_Slot2-39_1_8060_diatracer.107849.107849.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nELLAEQDARLc[61], unknown mods may exist in spectrum 20240927_SW-KF_S2_total_Slot2-39_1_8060_diatracer.109176.109176.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nTVSQGPLLAPDGPLAQSPc[61], unknown mods may exist in spectrum 20240927_SW-KF_S2_total_Slot2-39_1_8060_diatracer.109250.109250.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nVADEVVLPRQc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_total_Slot2-39_1_8060_diatracer.110143.110143.2 [INFO:] Please specify modification and rerun PTMProphet ... ​ [INFO:] written 21000/199305 spectrum_queries [ERROR:] Cannot initialize for sequence: nAPLASDHPAPSHHPGVATGc[61], unknown mods may exist in spectrum 20240927_SW-KF_S2_total_Slot2-39_1_8060_diatracer.114187.114187.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nAGLNGGHVc[61], unknown mods may exist in spectrum 20240927_SW-KF_S2_total_Slot2-39_1_8060_diatracer.114757.114757.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nDPPTSGSQSVGLc[61], unknown mods may exist in spectrum 20240927_SW-KF_S2_total_Slot2-39_1_8060_diatracer.114860.114860.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nPAPVGGGGGc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_total_Slot2-39_1_8060_diatracer.115116.115116.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nEPIFPSGc[61], unknown mods may exist in spectrum 20240927_SW-KF_S2_total_Slot2-39_1_8060_diatracer.115915.115915.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nM[147]INTAVKPFc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_total_Slot2-39_1_8060_diatracer.117784.117784.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nLRVSANGc[61], unknown mods may exist in spectrum 20240927_SW-KF_S2_total_Slot2-39_1_8060_diatracer.118643.118643.2 [INFO:] Please specify modification and rerun PTMProphet ... ​ [INFO:] written 22000/199305 spectrum_queries [ERROR:] Cannot initialize for sequence: nGDGQFFAVSVVC[160]PETDPQAVc[61], unknown mods may exist in spectrum 20240927_SW-KF_S2_total_Slot2-39_1_8060_diatracer.124409.124409.2 [INFO:] Please specify modification and rerun PTMProphet ... ​ [INFO:] written 23000/199305 spectrum_queries [ERROR:] Cannot initialize for sequence: nPIASPSEATQNIGILLDELVc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_total_Slot2-39_1_8060_diatracer.128300.128300.2 [INFO:] Please specify modification and rerun PTMProphet ... ​ [INFO:] written 24000/199305 spectrum_queries [ERROR:] Cannot initialize for sequence: nAVLIDEVC[160]TMND[202]GPHSALYTMMc[61], unknown mods may exist in spectrum 20240927_SW-KF_S2_total_Slot2-39_1_8060_diatracer.133227.133227.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nPPSQVPHPQAPAC[160]PVAc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_total_Slot2-39_1_8060_diatracer.133313.133313.2 [INFO:] Please specify modification and rerun PTMProphet ... ​ [INFO:] written 25000/199305 spectrum_queries [ERROR:] Cannot initialize for sequence: nGVEPNPGIPGADHYQTc[61], unknown mods may exist in spectrum 20240927_SW-KF_S2_total_Slot2-39_1_8060_diatracer.138354.138354.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nSTNPSVATFSLINGNIC[160]HERYVc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_total_Slot2-39_1_8060_diatracer.138824.138824.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nHLQAQEAPHTPGEATAc[61], unknown mods may exist in spectrum 20240927_SW-KF_S2_total_Slot2-39_1_8060_diatracer.139847.139847.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nSTNPSVATFSLINGNIC[160]HERYVc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_total_Slot2-39_1_8060_diatracer.140409.140409.3 [INFO:] Please specify modification and rerun PTMProphet ... ​ [INFO:] written 26000/199305 spectrum_queries [ERROR:] Cannot initialize for sequence: nASIDAAAAAAATSEPPQHc[61], unknown mods may exist in spectrum 20240927_SW-KF_S2_total_Slot2-39_1_8060_diatracer.142239.142239.2 [INFO:] Please specify modification and rerun PTMProphet ... ​ [INFO:] written 27000/199305 spectrum_queries [ERROR:] Cannot initialize for sequence: nVIVWDSFTTNKWFGc[61], unknown mods may exist in spectrum 20240927_SW-KF_S2_total_Slot2-39_1_8060_diatracer.147521.147521.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nSAAIGVFVLNRYNELc[61], unknown mods may exist in spectrum 20240927_SW-KF_S2_total_Slot2-39_1_8060_diatracer.148377.148377.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nQLVAGDIVLDKLGERc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_total_Slot2-39_1_8060_diatracer.151535.151535.2 [INFO:] Please specify modification and rerun PTMProphet ... ​ [INFO:] written 28000/199305 spectrum_queries [ERROR:] Cannot initialize for sequence: nMQVYFDMNYTNRAc[61], unknown mods may exist in spectrum 20240927_SW-KF_S2_total_Slot2-39_1_8060_diatracer.154156.154156.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nRELQQVTAGEAASIHc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_total_Slot2-39_1_8060_diatracer.157146.157146.2 [INFO:] Please specify modification and rerun PTMProphet ... ​ [INFO:] written 29000/199305 spectrum_queries [ERROR:] Cannot initialize for sequence: nRELQQVTAGEAASIHc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_total_Slot2-39_1_8060_diatracer.158728.158728.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nASDLLAWEQIFEVAVDEFTVSEc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_total_Slot2-39_1_8060_diatracer.161157.161157.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nTFVPASSPMYHTC[160]VAFAWLSGRc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_total_Slot2-39_1_8060_diatracer.162586.162586.3 [INFO:] Please specify modification and rerun PTMProphet ... ​ [INFO:] written 30000/199305 spectrum_queries [ERROR:] Cannot initialize for sequence: nGGPPFAFVEFEDPRDAE[216]DAVHIc[61], unknown mods may exist in spectrum 20240927_SW-KF_S2_total_Slot2-39_1_8060_diatracer.163662.163662.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nSEAPC[160]VRVPPSVLYEDLQVSSSSEDSDSDLEc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_total_Slot2-39_1_8060_diatracer.166543.166543.4 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: n[43]VTEVTVTDSDEEVTSc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_total_Slot2-39_1_8060_diatracer.166576.166576.2 [INFO:] Please specify modification and rerun PTMProphet ... ​ [INFO:] written 31000/199305 spectrum_queries [ERROR:] Cannot initialize for sequence: nKAVQGGGATPVVGAVQGPVPc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_total_Slot2-39_1_8060_diatracer.168867.168867.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nPLLEDPSQPEGAGAAAVAAAc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_total_Slot2-39_1_8060_diatracer.170393.170393.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nDM[147]KLVLIGHSIc[61], unknown mods may exist in spectrum 20240927_SW-KF_S2_total_Slot2-39_1_8060_diatracer.170468.170468.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nVVFGEGGEPGLMc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_total_Slot2-39_1_8060_diatracer.172548.172548.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nAAISSAAIGAGTFGc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_total_Slot2-39_1_8060_diatracer.172678.172678.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nGIC[160]PVYVLPVQLHAIGDc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_total_Slot2-39_1_8060_diatracer.173260.173260.3 [INFO:] Please specify modification and rerun PTMProphet ... ​ [INFO:] written 32000/199305 spectrum_queries [ERROR:] Cannot initialize for sequence: nQQQEQQQAKVDENYTc[61], unknown mods may exist in spectrum 20240927_SW-KF_S2_total_Slot2-39_1_8060_diatracer.174028.174028.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nFSELPLQAEVSc[61], unknown mods may exist in spectrum 20240927_SW-KF_S2_total_Slot2-39_1_8060_diatracer.174590.174590.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nRLTLIKPELVIVNDNVc[61], unknown mods may exist in spectrum 20240927_SW-KF_S2_total_Slot2-39_1_8060_diatracer.176666.176666.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nENLIELMADIC[160]HQVQc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_total_Slot2-39_1_8060_diatracer.177308.177308.3 [INFO:] Please specify modification and rerun PTMProphet ... ​ [INFO:] written 33000/199305 spectrum_queries [ERROR:] Cannot initialize for sequence: nAALAPLLALC[160]LLPALLPPc[61], unknown mods may exist in spectrum 20240927_SW-KF_S2_total_Slot2-39_1_8060_diatracer.178921.178921.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nRAELQPSC[160]PLc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_total_Slot2-39_1_8060_diatracer.179137.179137.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nTRGPSSPESLFSRELEc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_total_Slot2-39_1_8060_diatracer.179332.179332.3 [INFO:] Please specify modification and rerun PTMProphet ... ​ [INFO:] written 34000/199305 spectrum_queries [ERROR:] Cannot initialize for sequence: nNSYMKLC[160]LQQITDQKc[61], unknown mods may exist in spectrum 20240927_SW-KF_S2_total_Slot2-39_1_8060_diatracer.183164.183164.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nSINNASSVSTSQc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_total_Slot2-39_1_8060_diatracer.183273.183273.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nSFQALYTANQM[147]VNVC[160]Dc[61], unknown mods may exist in spectrum 20240927_SW-KF_S2_total_Slot2-39_1_8060_diatracer.185596.185596.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nNEVVSLMQANGAGGATNLQc[61], unknown mods may exist in spectrum 20240927_SW-KF_S2_total_Slot2-39_1_8060_diatracer.185760.185760.3 [INFO:] Please specify modification and rerun PTMProphet ... ​ [INFO:] written 35000/199305 spectrum_queries [ERROR:] Cannot initialize for sequence: nAAGVSGATVVAVGEc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_total_Slot2-39_1_8060_diatracer.190770.190770.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nDM[147]KLVLIGHSIc[61], unknown mods may exist in spectrum 20240927_SW-KF_S2_total_Slot2-39_1_8060_diatracer.191368.191368.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nFLDFITNIFAc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_total_Slot2-39_1_8060_diatracer.191565.191565.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nKAVQGGGATPVVGAVQGPVPc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_total_Slot2-39_1_8060_diatracer.192380.192380.3 [INFO:] Please specify modification and rerun PTMProphet ... ​ [INFO:] written 36000/199305 spectrum_queries [ERROR:] Cannot initialize for sequence: nTLFAPVNSPGAAGPGVPLDc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_total_Slot2-39_1_8060_diatracer.194454.194454.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nEPPEVHTNSYc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_total_Slot2-39_1_8060_diatracer.195298.195298.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nNSC[160]VKEEDMLc[61], unknown mods may exist in spectrum 20240927_SW-KF_S2_total_Slot2-39_1_8060_diatracer.195651.195651.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nIFLMVGWINLc[61], unknown mods may exist in spectrum 20240927_SW-KF_S2_total_Slot2-39_1_8060_diatracer.197114.197114.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nLFAAAEGLDSLDc[61], unknown mods may exist in spectrum 20240927_SW-KF_S2_total_Slot2-39_1_8060_diatracer.198404.198404.2 [INFO:] Please specify modification and rerun PTMProphet ... ​ [INFO:] written 37000/199305 spectrum_queries [ERROR:] Cannot initialize for sequence: nAALAPLLALC[160]LLPALLPPc[61], unknown mods may exist in spectrum 20240927_SW-KF_S2_total_Slot2-39_1_8060_diatracer.199812.199812.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nYTGHHAYASGC[160]TISPYc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_total_Slot2-39_1_8060_diatracer.199817.199817.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nLEDILVSMVFc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_total_Slot2-39_1_8060_diatracer.200329.200329.2 [INFO:] Please specify modification and rerun PTMProphet ... ​ [INFO:] written 38000/199305 spectrum_queries [ERROR:] Cannot initialize for sequence: nTFPARHGGSHLc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_total_Slot2-39_1_8060_diatracer.203657.203657.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nGHPLGATGGHSC[160]Sc[61], unknown mods may exist in spectrum 20240927_SW-KF_S2_total_Slot2-39_1_8060_diatracer.203940.203940.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nLQQELMTLMNPTLIVPc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_total_Slot2-39_1_8060_diatracer.204235.204235.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nTPETQPAGHGPLGLSLPPAc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_total_Slot2-39_1_8060_diatracer.204404.204404.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nTHGTFNGQASGTAc[61], unknown mods may exist in spectrum 20240927_SW-KF_S2_total_Slot2-39_1_8060_diatracer.204488.204488.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nDVDVGSSLSSDEc[61], unknown mods may exist in spectrum 20240927_SW-KF_S2_total_Slot2-39_1_8060_diatracer.205277.205277.2 [INFO:] Please specify modification and rerun PTMProphet ... ​ [INFO:] written 39000/199305 spectrum_queries [ERROR:] Cannot initialize for sequence: nVPVPAPC[160]EGVSAc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_total_Slot2-39_1_8060_diatracer.208583.208583.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nENVTPLPTRASc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_total_Slot2-39_1_8060_diatracer.208660.208660.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nQEASLAPYSHPc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_total_Slot2-39_1_8060_diatracer.209319.209319.2 [INFO:] Please specify modification and rerun PTMProphet ... ​ [INFO:] written 40000/199305 spectrum_queries [ERROR:] Cannot initialize for sequence: n[43]C[160]LLVVLLLLWINVLKc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_total_Slot2-39_1_8060_diatracer.215039.215039.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nNMVVRAC[160]GC[160]Hc[61], unknown mods may exist in spectrum 20240927_SW-KF_S2_total_Slot2-39_1_8060_diatracer.215274.215274.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nQEGHASPC[160]PPLQPVSVMc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_total_Slot2-39_1_8060_diatracer.216964.216964.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nIISDMWGVLAKc[61], unknown mods may exist in spectrum 20240927_SW-KF_S2_total_Slot2-39_1_8060_diatracer.217062.217062.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nDLAMFLWWSc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_total_Slot2-39_1_8060_diatracer.218268.218268.2 [INFO:] Please specify modification and rerun PTMProphet ... ​ [INFO:] written 41000/199305 spectrum_queries [ERROR:] Cannot initialize for sequence: nC[160]WAWGTSITNc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_total_Slot2-39_1_8060_diatracer.219859.219859.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nQLSDGQPPPPAQc[61], unknown mods may exist in spectrum 20240927_SW-KF_S2_total_Slot2-39_1_8060_diatracer.222082.222082.2 [INFO:] Please specify modification and rerun PTMProphet ... ​ [INFO:] written 42000/199305 spectrum_queries [ERROR:] Cannot initialize for sequence: nSSVQFIFHEDc[61], unknown mods may exist in spectrum 20240927_SW-KF_S2_total_Slot2-39_1_8060_diatracer.223536.223536.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nESLIGYRPTEDSKEFSc[61], unknown mods may exist in spectrum 20240927_SW-KF_S2_total_Slot2-39_1_8060_diatracer.224574.224574.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nVVFGEGGEPGLMc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_total_Slot2-39_1_8060_diatracer.224775.224775.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: n[43]GGSNLPTLLNSSc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_total_Slot2-39_1_8060_diatracer.225518.225518.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nFLTAFLVQISAc[61], unknown mods may exist in spectrum 20240927_SW-KF_S2_total_Slot2-39_1_8060_diatracer.226397.226397.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nENVTPLPTRASc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_total_Slot2-39_1_8060_diatracer.226937.226937.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nTHAGGKASc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_total_Slot2-39_1_8060_diatracer.228380.228380.2 [INFO:] Please specify modification and rerun PTMProphet ... ​ [INFO:] written 43000/199305 spectrum_queries [ERROR:] Cannot initialize for sequence: nTKGARAHVFPAc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_total_Slot2-39_1_8060_diatracer.228996.228996.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nRVVQHSNVVIc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_total_Slot2-39_1_8060_diatracer.230027.230027.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nPVIGALGLc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_total_Slot2-39_1_8060_diatracer.230978.230978.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nEKPRVLPPSLc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_total_Slot2-39_1_8060_diatracer.231769.231769.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nALHSAGIDSGFIIFGAc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_total_Slot2-39_1_8060_diatracer.233958.233958.4 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nLQTQLSWGRAVAPSc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_total_Slot2-39_1_8060_diatracer.235517.235517.4 [INFO:] Please specify modification and rerun PTMProphet ... ​ [INFO:] written 44000/199305 spectrum_queries [ERROR:] Cannot initialize for sequence: nAAPGELRc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_total_Slot2-39_1_8060_diatracer.236470.236470.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nPRGVSQAPLLLc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_total_Slot2-39_1_8060_diatracer.237200.237200.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nENISLGGIHSSGc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_total_Slot2-39_1_8060_diatracer.237371.237371.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nADAPVALVc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_total_Slot2-39_1_8060_diatracer.237379.237379.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nGPSGAGARGc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_total_Slot2-39_1_8060_diatracer.238493.238493.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nLDVNIKSTERc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_total_Slot2-39_1_8060_diatracer.238809.238809.3 [INFO:] Please specify modification and rerun PTMProphet ... ​ [INFO:] written 46000/199305 spectrum_queries [ERROR:] Cannot initialize for sequence: nLEDFYAGPQNAGLQRc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_total_Slot2-39_1_8060_diatracer.250113.250113.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nLEDFYAGPQNAGLQRc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_total_Slot2-39_1_8060_diatracer.251598.251598.2 [INFO:] Please specify modification and rerun PTMProphet ... ​ [INFO:] written 47000/199305 spectrum_queries [ERROR:] Cannot initialize for sequence: nLEDFYAGPQNAGLQRc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_total_Slot2-39_1_8060_diatracer.256069.256069.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nISQFFSQAGTQSLHSC[160]YKGKPTPc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_total_Slot2-39_1_8060_diatracer.257572.257572.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nLAQQQAALLMQQE[216]Ec[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_total_Slot2-39_1_8060_diatracer.257794.257794.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nC[160]IQLSTGGATRWAYEc[61], unknown mods may exist in spectrum 20240927_SW-KF_S2_total_Slot2-39_1_8060_diatracer.260151.260151.2 [INFO:] Please specify modification and rerun PTMProphet ... ​ [INFO:] written 48000/199305 spectrum_queries [ERROR:] Cannot initialize for sequence: nQQALQSQNSSTIC[160]SVSc[61], unknown mods may exist in spectrum 20240927_SW-KF_S2_total_Slot2-39_1_8060_diatracer.265472.265472.2 [INFO:] Please specify modification and rerun PTMProphet ... ​ [INFO:] written 49000/199305 spectrum_queries [ERROR:] Cannot initialize for sequence: nLQQAIAM[147]HSQFHAPLc[61], unknown mods may exist in spectrum 20240927_SW-KF_S2_total_Slot2-39_1_8060_diatracer.267585.267585.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nRSALQSINEWAAQTTDGKLPE[172]VTc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_total_Slot2-39_1_8060_diatracer.267859.267859.3 [INFO:] Please specify modification and rerun PTMProphet ... ​ [INFO:] written 50000/199305 spectrum_queries [ERROR:] Cannot initialize for sequence: nPVAPSGTALSTTSSFGSSNTGSVFGQAAc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_total_Slot2-39_1_8060_diatracer.273012.273012.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nTPGGTAEGVVSLKDESIDNKPDLEKc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_total_Slot2-39_1_8060_diatracer.273239.273239.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nKTPPEGDNFFGFIEDIDSAQSGTSAc[61], unknown mods may exist in spectrum 20240927_SW-KF_S2_total_Slot2-39_1_8060_diatracer.274518.274518.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nMVTEVTVTDSDEEVTSc[61], unknown mods may exist in spectrum 20240927_SW-KF_S2_total_Slot2-39_1_8060_diatracer.275997.275997.2 [INFO:] Please specify modification and rerun PTMProphet ... ​ [INFO:] written 51000/199305 spectrum_queries [ERROR:] Cannot initialize for sequence: nAGEGTYALD[202]SESC[160]MEc[61], unknown mods may exist in spectrum 20240927_SW-KF_S2_total_Slot2-39_1_8060_diatracer.279245.279245.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nVTLLDASEYEC[160]E[172]VEc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_total_Slot2-39_1_8060_diatracer.280436.280436.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nTEWDLSVISNYNELc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_total_Slot2-39_1_8060_diatracer.282886.282886.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nLAQQQAALLMQQE[216]Ec[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_total_Slot2-39_1_8060_diatracer.283133.283133.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nLEPYNTFGILIFEAALSHNERAc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_total_Slot2-39_1_8060_diatracer.284036.284036.4 [INFO:] Please specify modification and rerun PTMProphet ... ​ [INFO:] written 52000/199305 spectrum_queries [ERROR:] Cannot initialize for sequence: nVQEILLPQPPEc[61], unknown mods may exist in spectrum 20240927_SW-KF_S2_total_Slot2-39_1_8060_diatracer.284490.284490.2 [INFO:] Please specify modification and rerun PTMProphet ... ​ [INFO:] written 53000/199305 spectrum_queries [ERROR:] Cannot initialize for sequence: nLSNQPGLRTASGRWAQKc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_total_Slot2-39_1_8060_diatracer.289469.289469.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nDHVYGIHNPVMTSPSQHc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_total_Slot2-39_1_8060_diatracer.290738.290738.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nEC[160]PLSQSMISSIVNSTYc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_total_Slot2-39_1_8060_diatracer.290798.290798.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nQAVPNGGRFNFc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_total_Slot2-39_1_8060_diatracer.293956.293956.2 [INFO:] Please specify modification and rerun PTMProphet ... ​ [INFO:] written 54000/199305 spectrum_queries [ERROR:] Cannot initialize for sequence: nQEIRAC[160]HGKMEGITTFc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_total_Slot2-39_1_8060_diatracer.294958.294958.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: n[43]MGLPSSSPDASTAc[61], unknown mods may exist in spectrum 20240927_SW-KF_S2_total_Slot2-39_1_8060_diatracer.296869.296869.2 [INFO:] Please specify modification and rerun PTMProphet ... ​ [INFO:] written 55000/199305 spectrum_queries [ERROR:] Cannot initialize for sequence: nVQEILLPQPPEc[61], unknown mods may exist in spectrum 20240927_SW-KF_S2_total_Slot2-39_1_8060_diatracer.299779.299779.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nYWSPAQSGLAGGPGPAGC[160]ASAc[61], unknown mods may exist in spectrum 20240927_SW-KF_S2_total_Slot2-39_1_8060_diatracer.301062.301062.3 [INFO:] Please specify modification and rerun PTMProphet ... ​ [INFO:] written 56000/199305 spectrum_queries [ERROR:] Cannot initialize for sequence: nADASEVHRDSEc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_total_Slot2-39_1_8060_diatracer.304551.304551.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nLAAC[160]RGRVPFYVVTYPPc[61], unknown mods may exist in spectrum 20240927_SW-KF_S2_total_Slot2-39_1_8060_diatracer.306468.306468.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nAVQLTQAM[147]DTSTVGVLLAAc[61], unknown mods may exist in spectrum 20240927_SW-KF_S2_total_Slot2-39_1_8060_diatracer.307050.307050.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nIDEEDANSSVHc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_total_Slot2-39_1_8060_diatracer.307137.307137.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nSLIASGLYGYNATLVGVLMc[61], unknown mods may exist in spectrum 20240927_SW-KF_S2_total_Slot2-39_1_8060_diatracer.308188.308188.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nPRDLDLAGLQGSc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_total_Slot2-39_1_8060_diatracer.308203.308203.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nEMTFHQC[160]PC[160]LTELC[160]Qc[61], unknown mods may exist in spectrum 20240927_SW-KF_S2_total_Slot2-39_1_8060_diatracer.308648.308648.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nLVGPDFFGC[160]AEPANTFLc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_total_Slot2-39_1_8060_diatracer.309327.309327.3 [INFO:] Please specify modification and rerun PTMProphet ... ​ [INFO:] written 57000/199305 spectrum_queries [ERROR:] Cannot initialize for sequence: nLPFSRLIPFPILGDC[160]LSSPNYWc[61], unknown mods may exist in spectrum 20240927_SW-KF_S2_total_Slot2-39_1_8060_diatracer.310623.310623.4 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nVSLSNALSSPTSLPPAAAGQGc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_total_Slot2-39_1_8060_diatracer.311674.311674.3 [INFO:] Please specify modification and rerun PTMProphet ... ​ [INFO:] written 58000/199305 spectrum_queries [ERROR:] Cannot initialize for sequence: nPLASAFEESC[160]Rc[61], unknown mods may exist in spectrum 20240927_SW-KF_S2_total_Slot2-39_1_8060_diatracer.315294.315294.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nSMASSETQLGNHDVDPEIc[61], unknown mods may exist in spectrum 20240927_SW-KF_S2_total_Slot2-39_1_8060_diatracer.315322.315322.3 [INFO:] Please specify modification and rerun PTMProphet ... ​ [INFO:] written 59000/199305 spectrum_queries [ERROR:] Cannot initialize for sequence: nFSSHVLTEDLDc[61], unknown mods may exist in spectrum 20240927_SW-KF_S2_total_Slot2-39_1_8060_diatracer.319870.319870.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nPGQPETSAALKEc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_total_Slot2-39_1_8060_diatracer.320662.320662.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nSLIASGLYGYNATLVGVLMc[61], unknown mods may exist in spectrum 20240927_SW-KF_S2_total_Slot2-39_1_8060_diatracer.321302.321302.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nVQEILLPQPPEc[61], unknown mods may exist in spectrum 20240927_SW-KF_S2_total_Slot2-39_1_8060_diatracer.322748.322748.2 [INFO:] Please specify modification and rerun PTMProphet ... ​ [INFO:] written 60000/199305 spectrum_queries [ERROR:] Cannot initialize for sequence: nLLPVAYLLMEVKGHGMLSc[61], unknown mods may exist in spectrum 20240927_SW-KF_S2_total_Slot2-39_1_8060_diatracer.324389.324389.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nLPHYFPVDPPSGPRSQLc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_total_Slot2-39_1_8060_diatracer.326337.326337.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nNLQEGQVTDPRGIPLPPQc[61], unknown mods may exist in spectrum 20240927_SW-KF_S2_total_Slot2-39_1_8060_diatracer.326642.326642.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nSLPRSFAEAHVc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_total_Slot2-39_1_8060_diatracer.327087.327087.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nEWTPAQPFPHc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_total_Slot2-39_1_8060_diatracer.327201.327201.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nQQLLSHGDTKPc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_total_Slot2-39_1_8060_diatracer.327936.327936.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nRSALQSINEWAAQTTD[158]GKLPEVTc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_total_Slot2-39_1_8060_diatracer.328867.328867.4 [INFO:] Please specify modification and rerun PTMProphet ... ​ [INFO:] written 61000/199305 spectrum_queries [ERROR:] Cannot initialize for sequence: nTSIAPFVALLC[160]TLVFLLc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_total_Slot2-39_1_8060_diatracer.330779.330779.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nPSSIADLVFTYc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_total_Slot2-39_1_8060_diatracer.332341.332341.2 [INFO:] Please specify modification and rerun PTMProphet ... ​ [INFO:] written 62000/199305 spectrum_queries [ERROR:] Cannot initialize for sequence: nNQVVGC[160]QSLPWc[61], unknown mods may exist in spectrum 20240927_SW-KF_S2_total_Slot2-39_1_8060_diatracer.334330.334330.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: n[43]MQRLM[147]MLLATSGAC[160]LGLc[61], unknown mods may exist in spectrum 20240927_SW-KF_S2_total_Slot2-39_1_8060_diatracer.335653.335653.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nSQLRSSSVSSVSGGNKDASAc[61], unknown mods may exist in spectrum 20240927_SW-KF_S2_total_Slot2-39_1_8060_diatracer.335788.335788.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nLQEVLKRAQAISATNNSAc[61], unknown mods may exist in spectrum 20240927_SW-KF_S2_total_Slot2-39_1_8060_diatracer.337960.337960.3 [INFO:] Please specify modification and rerun PTMProphet ... ​ [INFO:] written 63000/199305 spectrum_queries [ERROR:] Cannot initialize for sequence: n[43]MATSADSPSSPLGc[61], unknown mods may exist in spectrum 20240927_SW-KF_S2_total_Slot2-39_1_8060_diatracer.340331.340331.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nLSQTEAAAc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_total_Slot2-39_1_8060_diatracer.343748.343748.2 [INFO:] Please specify modification and rerun PTMProphet ... ​ [INFO:] written 64000/199305 spectrum_queries [ERROR:] Cannot initialize for sequence: nGPVVSLWPAPGKc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_total_Slot2-39_1_8060_diatracer.346984.346984.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nPAAKPAAAGAc[61], unknown mods may exist in spectrum 20240927_SW-KF_S2_total_Slot2-39_1_8060_diatracer.347145.347145.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nETPDLPPSGVEKc[61], unknown mods may exist in spectrum 20240927_SW-KF_S2_total_Slot2-39_1_8060_diatracer.347261.347261.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nTQGSLGSHc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_total_Slot2-39_1_8060_diatracer.347266.347266.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nQQAASKEELEVc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_total_Slot2-39_1_8060_diatracer.347284.347284.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nWVTTFVSc[61], unknown mods may exist in spectrum 20240927_SW-KF_S2_total_Slot2-39_1_8060_diatracer.349213.349213.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nGVIEEPKc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_total_Slot2-39_1_8060_diatracer.349598.349598.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nWTSVVMAc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_total_Slot2-39_1_8060_diatracer.349900.349900.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nLARPGPAEc[61], unknown mods may exist in spectrum 20240927_SW-KF_S2_total_Slot2-39_1_8060_diatracer.350339.350339.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nNAVLGGQATc[61], unknown mods may exist in spectrum 20240927_SW-KF_S2_total_Slot2-39_1_8060_diatracer.350733.350733.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nQGAGAPTAPc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_total_Slot2-39_1_8060_diatracer.351197.351197.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nVVGPGSAPGATGAGAAc[61], unknown mods may exist in spectrum 20240927_SW-KF_S2_total_Slot2-39_1_8060_diatracer.351284.351284.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nSLGSVAPAAc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_total_Slot2-39_1_8060_diatracer.352247.352247.2 [INFO:] Please specify modification and rerun PTMProphet ... ​ [INFO:] written 65000/199305 spectrum_queries [ERROR:] Cannot initialize for sequence: nGPHAGNVSGc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_total_Slot2-39_1_8060_diatracer.353457.353457.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nEHAVAISLSHTSc[61], unknown mods may exist in spectrum 20240927_SW-KF_S2_total_Slot2-39_1_8060_diatracer.353973.353973.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nGGPDGLHDLDNNc[61], unknown mods may exist in spectrum 20240927_SW-KF_S2_total_Slot2-39_1_8060_diatracer.354578.354578.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nSSGSGGGRTc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_total_Slot2-39_1_8060_diatracer.354684.354684.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nVVGPGSAPGATGAGAAc[61], unknown mods may exist in spectrum 20240927_SW-KF_S2_total_Slot2-39_1_8060_diatracer.354775.354775.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nQTAATLSSGWAAAc[61], unknown mods may exist in spectrum 20240927_SW-KF_S2_total_Slot2-39_1_8060_diatracer.355618.355618.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nPADERSQc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_total_Slot2-39_1_8060_diatracer.356293.356293.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nGVIEEPKc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_total_Slot2-39_1_8060_diatracer.357310.357310.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nAREELDLTVGNc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_total_Slot2-39_1_8060_diatracer.357591.357591.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nPAASPSPIGc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_total_Slot2-39_1_8060_diatracer.357866.357866.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nLQGAYSNGc[61], unknown mods may exist in spectrum 20240927_SW-KF_S2_total_Slot2-39_1_8060_diatracer.358197.358197.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nWLGLQGPSGGPGVc[61], unknown mods may exist in spectrum 20240927_SW-KF_S2_total_Slot2-39_1_8060_diatracer.359026.359026.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nPPGPGQGSAc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_total_Slot2-39_1_8060_diatracer.359947.359947.2 [INFO:] Please specify modification and rerun PTMProphet ... ​ [INFO:] written 66000/199305 spectrum_queries [ERROR:] Cannot initialize for sequence: nLWALSLAHARSc[61], unknown mods may exist in spectrum 20240927_SW-KF_S2_total_Slot2-39_1_8060_diatracer.360767.360767.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nLPAPDEAIc[61], unknown mods may exist in spectrum 20240927_SW-KF_S2_total_Slot2-39_1_8060_diatracer.361077.361077.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nWLGLQGPSGGPGVc[61], unknown mods may exist in spectrum 20240927_SW-KF_S2_total_Slot2-39_1_8060_diatracer.361631.361631.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nASATSLWGMPWQHVAASREPc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_total_Slot2-39_1_8060_diatracer.365117.365117.2 [INFO:] Please specify modification and rerun PTMProphet ... ​ [INFO:] written 67000/199305 spectrum_queries [ERROR:] Cannot initialize for sequence: nASATSLWGMPWQHVAASREPc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_total_Slot2-39_1_8060_diatracer.368026.368026.2 [INFO:] Please specify modification and rerun PTMProphet ... ​ [INFO:] written 68000/199305 spectrum_queries [ERROR:] Cannot initialize for sequence: nLDSWEEHIFSAFGNFc[61], unknown mods may exist in spectrum 20240927_SW-KF_S2_total_Slot2-39_1_8060_diatracer.373254.373254.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nAASSSPDSPc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_total_Slot2-39_1_8060_diatracer.375071.375071.1 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nTTGIVMDSGDGVTHTVPIc[61], unknown mods may exist in spectrum 20240927_SW-KF_S2_total_Slot2-39_1_8060_diatracer.375914.375914.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nKEVKYFAESDEEEDDVDFAMFNc[61], unknown mods may exist in spectrum 20240927_SW-KF_S2_total_Slot2-39_1_8060_diatracer.378649.378649.3 [INFO:] Please specify modification and rerun PTMProphet ... ​ [INFO:] written 69000/199305 spectrum_queries [ERROR:] Cannot initialize for sequence: nVETFAVTFNTLDAIESc[61], unknown mods may exist in spectrum 20240927_SW-KF_S2_total_Slot2-39_1_8060_diatracer.379982.379982.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nLPNGRDTPALFNFTTQc[61], unknown mods may exist in spectrum 20240927_SW-KF_S2_total_Slot2-39_1_8060_diatracer.380952.380952.2 [INFO:] Please specify modification and rerun PTMProphet ... ​ [INFO:] written 70000/199305 spectrum_queries [ERROR:] Cannot initialize for sequence: nDLFSYTGSAHTRQGTEc[61], unknown mods may exist in spectrum 20240927_SW-KF_S2_total_Slot2-39_1_8060_diatracer.386752.386752.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nASVPSLEC[160]LAGPEPGAATLC[160]SSMLAFIAIVYHSTc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_total_Slot2-39_1_8060_diatracer.389107.389107.4 [INFO:] Please specify modification and rerun PTMProphet ... ​ [INFO:] written 71000/199305 spectrum_queries [ERROR:] Cannot initialize for sequence: n[43]MSVGVSTSAPLSPTSGTSVGMSTFSIMc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_total_Slot2-39_1_8060_diatracer.392607.392607.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nGIQVWTNAKEC[160]FSKMc[61], unknown mods may exist in spectrum 20240927_SW-KF_S2_total_Slot2-39_1_8060_diatracer.393996.393996.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nLASLMNLGMSSSLNQQGAHSALSSASTc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_total_Slot2-39_1_8060_diatracer.395166.395166.3 [INFO:] Please specify modification and rerun PTMProphet ... ​ [INFO:] written 72000/199305 spectrum_queries [ERROR:] Cannot initialize for sequence: nMEKTLQQMEEVVGSVc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_total_Slot2-39_1_8060_diatracer.399255.399255.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nPESQPAMEPQGVSFGLSSLAELTERc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_total_Slot2-39_1_8060_diatracer.400330.400330.3 [INFO:] Please specify modification and rerun PTMProphet ... ​ [INFO:] written 73000/199305 spectrum_queries [ERROR:] Cannot initialize for sequence: n[43]MESTVDDEAPAVc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_total_Slot2-39_1_8060_diatracer.402712.402712.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nDQGAAGLIDFASPLSPGTC[160]Ac[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_total_Slot2-39_1_8060_diatracer.403494.403494.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nNQGGTHTGSASEGHc[61], unknown mods may exist in spectrum 20240927_SW-KF_S2_total_Slot2-39_1_8060_diatracer.404864.404864.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nLELNVPFEVPSPc[61], unknown mods may exist in spectrum 20240927_SW-KF_S2_total_Slot2-39_1_8060_diatracer.405012.405012.2 [INFO:] Please specify modification and rerun PTMProphet ... ​ [INFO:] written 74000/199305 spectrum_queries [ERROR:] Cannot initialize for sequence: nVGSSAVTTLGDPAKc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_total_Slot2-39_1_8060_diatracer.407592.407592.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nEEIINSLQLQNc[61], unknown mods may exist in spectrum 20240927_SW-KF_S2_total_Slot2-39_1_8060_diatracer.408030.408030.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nLGGDLLRALNEIc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_total_Slot2-39_1_8060_diatracer.409242.409242.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nQAGTLM[147]VLLLTPLLVLVVSc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_total_Slot2-39_1_8060_diatracer.410221.410221.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nSNSFSLDIIIALGIPHNTQAHFNHc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_total_Slot2-39_1_8060_diatracer.411481.411481.4 [INFO:] Please specify modification and rerun PTMProphet ... ​ [INFO:] written 75000/199305 spectrum_queries [ERROR:] Cannot initialize for sequence: nMYIPGPDLHNESSLYYSc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_total_Slot2-39_1_8060_diatracer.412192.412192.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nNLLLDLLSTWTVPEQIHc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_total_Slot2-39_1_8060_diatracer.412419.412419.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nNDAC[160]QIAAAGQPGc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_total_Slot2-39_1_8060_diatracer.413463.413463.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nE[172]GNVPNIIIAGHc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_total_Slot2-39_1_8060_diatracer.413797.413797.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nTIQQLETVLGEPLQSYFc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_total_Slot2-39_1_8060_diatracer.414081.414081.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nMLM[147]ELSAGAANFTDQKEFc[61], unknown mods may exist in spectrum 20240927_SW-KF_S2_total_Slot2-39_1_8060_diatracer.414228.414228.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nAAPSPGSVQPSGPWNGARGSPc[61], unknown mods may exist in spectrum 20240927_SW-KF_S2_total_Slot2-39_1_8060_diatracer.415130.415130.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nAQNTENHDPVGSILIQGFc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_total_Slot2-39_1_8060_diatracer.415164.415164.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nVSSAAPM[147]SDVEVVc[61], unknown mods may exist in spectrum 20240927_SW-KF_S2_total_Slot2-39_1_8060_diatracer.415199.415199.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nKNLISESQDLLLGC[160]VMLc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_total_Slot2-39_1_8060_diatracer.415396.415396.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nFSIAFSIVGMFASHAVGSLSVFFC[160]Ac[61], unknown mods may exist in spectrum 20240927_SW-KF_S2_total_Slot2-39_1_8060_diatracer.415476.415476.4 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nNIDHLDLSLVYDKSGVYc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_total_Slot2-39_1_8060_diatracer.415760.415760.3 [INFO:] Please specify modification and rerun PTMProphet ... ​ [INFO:] written 76000/199305 spectrum_queries [ERROR:] Cannot initialize for sequence: nLPSALTATAC[160]KSVQVNGAATHC[160]PGKNc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_total_Slot2-39_1_8060_diatracer.418938.418938.4 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nDLC[160]AIWEASSSSHAAHAAVc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_total_Slot2-39_1_8060_diatracer.419401.419401.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nGSWGFTSM[147]TVIAFNGGVSPc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_total_Slot2-39_1_8060_diatracer.420002.420002.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nDSFGLLIFGTFSSGNKQDc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_total_Slot2-39_1_8060_diatracer.420047.420047.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nPPSAAGPAGWAAQGSc[61], unknown mods may exist in spectrum 20240927_SW-KF_S2_total_Slot2-39_1_8060_diatracer.421185.421185.2 [INFO:] Please specify modification and rerun PTMProphet ... ​ [INFO:] written 77000/199305 spectrum_queries [ERROR:] Cannot initialize for sequence: nLEDSLQYNNTRLELLQAc[61], unknown mods may exist in spectrum 20240927_SW-KF_S2_total_Slot2-39_1_8060_diatracer.421611.421611.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nDQGAAGLIDFASPLSPGTC[160]Ac[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_total_Slot2-39_1_8060_diatracer.422924.422924.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nGPGAAQTPTVPTAIc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_total_Slot2-39_1_8060_diatracer.423590.423590.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nTTTFMLVGIC[160]LSIQSYYc[61], unknown mods may exist in spectrum 20240927_SW-KF_S2_total_Slot2-39_1_8060_diatracer.425945.425945.3 [INFO:] Please specify modification and rerun PTMProphet ... ​ [INFO:] written 78000/199305 spectrum_queries [ERROR:] Cannot initialize for sequence: nINDNC[160]NEEM[147]SYSVEKLFWGSYLc[61], unknown mods may exist in spectrum 20240927_SW-KF_S2_total_Slot2-39_1_8060_diatracer.426580.426580.4 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nAAIEETLLLESSc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_total_Slot2-39_1_8060_diatracer.428312.428312.2 [INFO:] Please specify modification and rerun PTMProphet ... ​ [INFO:] written 79000/199305 spectrum_queries [ERROR:] Cannot initialize for sequence: n[43]ASAC[160]GAPGPGGALGSQAPSWYc[61], unknown mods may exist in spectrum 20240927_SW-KF_S2_total_Slot2-39_1_8060_diatracer.432974.432974.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nEAAC[160]ISPVHPKHHSALFTc[61], unknown mods may exist in spectrum 20240927_SW-KF_S2_total_Slot2-39_1_8060_diatracer.433107.433107.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nLNEQEGVPSVFNPPPSRPc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_total_Slot2-39_1_8060_diatracer.433514.433514.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nLLGALYGIRAHEWMFPVc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_total_Slot2-39_1_8060_diatracer.433589.433589.3 [INFO:] Please specify modification and rerun PTMProphet ... ​ [INFO:] written 80000/199305 spectrum_queries [ERROR:] Cannot initialize for sequence: nLGGDLLRALNEIc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_total_Slot2-39_1_8060_diatracer.438396.438396.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nGQGTAATAQMVNMc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_total_Slot2-39_1_8060_diatracer.440542.440542.2 [INFO:] Please specify modification and rerun PTMProphet ... ​ [INFO:] written 81000/199305 spectrum_queries [ERROR:] Cannot initialize for sequence: nPHVSPGPPC[160]IGTGSFATTRc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_total_Slot2-39_1_8060_diatracer.442469.442469.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nEKTTAEYQVLVEGVPSPRc[61], unknown mods may exist in spectrum 20240927_SW-KF_S2_total_Slot2-39_1_8060_diatracer.442769.442769.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nYSVIDDLIFFASKKC[160]Hc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_total_Slot2-39_1_8060_diatracer.444808.444808.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nELIPSLC[160]LPEKc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_total_Slot2-39_1_8060_diatracer.446342.446342.2 [INFO:] Please specify modification and rerun PTMProphet ... ​ [INFO:] written 82000/199305 spectrum_queries [ERROR:] Cannot initialize for sequence: nDLSFNPIITVLE[216]KEALFEVEAADc[61], unknown mods may exist in spectrum 20240927_SW-KF_S2_total_Slot2-39_1_8060_diatracer.446933.446933.4 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nC[160]NTLSSPNQYQc[61], unknown mods may exist in spectrum 20240927_SW-KF_S2_total_Slot2-39_1_8060_diatracer.447212.447212.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nYEDLC[160]AFYHPGVNGPPLc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_total_Slot2-39_1_8060_diatracer.447265.447265.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nRSPVAAQGTETAAAc[61], unknown mods may exist in spectrum 20240927_SW-KF_S2_total_Slot2-39_1_8060_diatracer.448003.448003.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nILDTIDIVRDAVAPGEYKc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_total_Slot2-39_1_8060_diatracer.448780.448780.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nSQDLMINSSQFc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_total_Slot2-39_1_8060_diatracer.449610.449610.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nWNNITEEPC[160]FWFISC[160]c[61], unknown mods may exist in spectrum 20240927_SW-KF_S2_total_Slot2-39_1_8060_diatracer.449998.449998.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nSELHIENLNMEc[61], unknown mods may exist in spectrum 20240927_SW-KF_S2_total_Slot2-39_1_8060_diatracer.450453.450453.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nFSVPVQHFC[160]GGNPSTPIQc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_total_Slot2-39_1_8060_diatracer.450522.450522.3 [INFO:] Please specify modification and rerun PTMProphet ... ​ [INFO:] written 83000/199305 spectrum_queries [ERROR:] Cannot initialize for sequence: nDSVLSVC[160]NMVHc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_total_Slot2-39_1_8060_diatracer.451635.451635.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nGEPGIPGTKGDPGAEGKPGPPGc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_total_Slot2-39_1_8060_diatracer.452819.452819.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nPQEEIIATIYNc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_total_Slot2-39_1_8060_diatracer.453354.453354.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nAGMFVMALASSISc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_total_Slot2-39_1_8060_diatracer.455309.455309.2 [INFO:] Please specify modification and rerun PTMProphet ... ​ [INFO:] written 84000/199305 spectrum_queries [ERROR:] Cannot initialize for sequence: nSVGM[147]IAGGTc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_total_Slot2-39_1_8060_diatracer.457728.457728.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nGASGGGGLMNc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_total_Slot2-39_1_8060_diatracer.458103.458103.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nPMDELVTLEEADc[61], unknown mods may exist in spectrum 20240927_SW-KF_S2_total_Slot2-39_1_8060_diatracer.458663.458663.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nLNLAEDGPKFQSc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_total_Slot2-39_1_8060_diatracer.458683.458683.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nLNIVSLEAc[61], unknown mods may exist in spectrum 20240927_SW-KF_S2_total_Slot2-39_1_8060_diatracer.459268.459268.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nNAVLGGQATc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_total_Slot2-39_1_8060_diatracer.459541.459541.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nGASGGGGLMNc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_total_Slot2-39_1_8060_diatracer.461731.461731.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: n[43]DLQPTVILAAEAc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_total_Slot2-39_1_8060_diatracer.461995.461995.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nDDALIQERLEYETTLc[61], unknown mods may exist in spectrum 20240927_SW-KF_S2_total_Slot2-39_1_8060_diatracer.462315.462315.4 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nWPTAQHPAQGPAc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_total_Slot2-39_1_8060_diatracer.462816.462816.3 [INFO:] Please specify modification and rerun PTMProphet ... ​ [INFO:] written 85000/199305 spectrum_queries [ERROR:] Cannot initialize for sequence: n[43]DLQPTVILAAEAc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_total_Slot2-39_1_8060_diatracer.463250.463250.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nLQSGIC[160]HLFREc[61], unknown mods may exist in spectrum 20240927_SW-KF_S2_total_Slot2-39_1_8060_diatracer.463767.463767.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nGWGWGQGFc[61], unknown mods may exist in spectrum 20240927_SW-KF_S2_total_Slot2-39_1_8060_diatracer.465205.465205.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nLELPDNVSGEFGc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_total_Slot2-39_1_8060_diatracer.465722.465722.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nKFLVAIGAGc[61], unknown mods may exist in spectrum 20240927_SW-KF_S2_total_Slot2-39_1_8060_diatracer.468435.468435.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nQPVSM[147]QNGc[61], unknown mods may exist in spectrum 20240927_SW-KF_S2_total_Slot2-39_1_8060_diatracer.468487.468487.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nEVLLSPGLQGVGVc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_total_Slot2-39_1_8060_diatracer.469355.469355.3 [INFO:] Please specify modification and rerun PTMProphet ... ​ [INFO:] written 86000/199305 spectrum_queries [ERROR:] Cannot initialize for sequence: nSVGM[147]IAGGTc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_total_Slot2-39_1_8060_diatracer.470489.470489.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nDVNVIPATAc[61], unknown mods may exist in spectrum 20240927_SW-KF_S2_total_Slot2-39_1_8060_diatracer.471575.471575.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nGASGGGGLMNc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_total_Slot2-39_1_8060_diatracer.474392.474392.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nGPGLSGGPPEc[61], unknown mods may exist in spectrum 20240927_SW-KF_S2_total_Slot2-39_1_8060_diatracer.474662.474662.2 [INFO:] Please specify modification and rerun PTMProphet ... ​ [INFO:] written 87000/199305 spectrum_queries [ERROR:] Cannot initialize for sequence: nQLDRDLHGSGGTc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_total_Slot2-39_1_8060_diatracer.480518.480518.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nEGAEVAPGQc[61], unknown mods may exist in spectrum 20240927_SW-KF_S2_total_Slot2-39_1_8060_diatracer.481856.481856.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nHQESLGGGAc[61], unknown mods may exist in spectrum 20240927_SW-KF_S2_total_Slot2-39_1_8060_diatracer.483071.483071.2 [INFO:] Please specify modification and rerun PTMProphet ... ​ [INFO:] written 88000/199305 spectrum_queries [ERROR:] Cannot initialize for sequence: nGAGAAVGAAASGc[61], unknown mods may exist in spectrum 20240927_SW-KF_S2_total_Slot2-39_1_8060_diatracer.484510.484510.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nPLFPLPAAFYHPGSYLGLKEc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_total_Slot2-39_1_8060_diatracer.486150.486150.2 [INFO:] Please specify modification and rerun PTMProphet ... ​ [INFO:] written 89000/199305 spectrum_queries [ERROR:] Cannot initialize for sequence: nGGSYSQAASSDSAQGSD[158]VSLTAC[160]c[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_total_Slot2-39_1_8060_diatracer.489839.489839.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nGGSYSQAASSDSAQGSD[158]VSLTAC[160]c[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_total_Slot2-39_1_8060_diatracer.490932.490932.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nNNLSFIETSALDSTNVE[172]EAFc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_total_Slot2-39_1_8060_diatracer.490961.490961.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nNNLSFIETSALDSTNVE[172]EAFc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_total_Slot2-39_1_8060_diatracer.491507.491507.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nDQMQQLLTQVVSTLDQVTKPDTEAc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_total_Slot2-39_1_8060_diatracer.491959.491959.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nLSYPSHSSADINSSLPPc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_total_Slot2-39_1_8060_diatracer.494515.494515.2 [INFO:] Please specify modification and rerun PTMProphet ... ​ [INFO:] written 90000/199305 spectrum_queries [ERROR:] Cannot initialize for sequence: nPNPPLNLDSYIVGQNDc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_total_Slot2-39_1_8060_diatracer.497798.497798.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nNEVAILQNLHHPGIVNc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_total_Slot2-39_1_8060_diatracer.498061.498061.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nVWTSAETPLTILLQQPc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_total_Slot2-39_1_8060_diatracer.501222.501222.2 [INFO:] Please specify modification and rerun PTMProphet ... ​ [INFO:] written 91000/199305 spectrum_queries [ERROR:] Cannot initialize for sequence: nGGPGGLQHVEAALPQPLC[160]c[61], unknown mods may exist in spectrum 20240927_SW-KF_S2_total_Slot2-39_1_8060_diatracer.506307.506307.2 [INFO:] Please specify modification and rerun PTMProphet ... ​ [INFO:] written 93000/199305 spectrum_queries [ERROR:] Cannot initialize for sequence: nADVQDWAKEQTFTHLc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_total_Slot2-39_1_8060_diatracer.514090.514090.2 [INFO:] Please specify modification and rerun PTMProphet ... ​ [INFO:] written 94000/199305 spectrum_queries [ERROR:] Cannot initialize for sequence: nQPFMLQHASGEHKDGHGKc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_total_Slot2-39_1_8060_diatracer.524366.524366.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nVGSHPEGGASWLSTAANFLSRSFYWc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_total_Slot2-39_1_8060_diatracer.524773.524773.4 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nC[160]VIEHTNPAFFc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_total_Slot2-39_1_8060_diatracer.525173.525173.2 [INFO:] Please specify modification and rerun PTMProphet ... ​ [INFO:] written 95000/199305 spectrum_queries [ERROR:] Cannot initialize for sequence: nLEPFGQPGLGNAEc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_total_Slot2-39_1_8060_diatracer.525295.525295.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nTNPNVESHATGVNc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_total_Slot2-39_1_8060_diatracer.525535.525535.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: n[43]QSGLAGGGPPAGC[160]ASAc[61], unknown mods may exist in spectrum 20240927_SW-KF_S2_total_Slot2-39_1_8060_diatracer.526406.526406.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nVGSHPEGGASWLSTAANFLSRSFYWc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_total_Slot2-39_1_8060_diatracer.527149.527149.4 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nQSGPDRGAGPSDHGQGPHQGPc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_total_Slot2-39_1_8060_diatracer.530003.530003.3 [INFO:] Please specify modification and rerun PTMProphet ... ​ [INFO:] written 96000/199305 spectrum_queries [ERROR:] Cannot initialize for sequence: nEGRQAGPAGAVAAPAAc[61], unknown mods may exist in spectrum 20240927_SW-KF_S2_total_Slot2-39_1_8060_diatracer.530955.530955.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nLPGGQQPGAGGPGPQc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_total_Slot2-39_1_8060_diatracer.531804.531804.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nM[147]LMLLAAGM[147]AAC[160]HSFHLELVIQYAc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_total_Slot2-39_1_8060_diatracer.531848.531848.4 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nSLGLSSQTPM[147]LTSc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_total_Slot2-39_1_8060_diatracer.532897.532897.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nVDGVMILPVLIMIALPSPSMc[61], unknown mods may exist in spectrum 20240927_SW-KF_S2_total_Slot2-39_1_8060_diatracer.532965.532965.3 [INFO:] Please specify modification and rerun PTMProphet ... ​ [INFO:] written 97000/199305 spectrum_queries [ERROR:] Cannot initialize for sequence: nNEIIPPTDPFPIc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_total_Slot2-39_1_8060_diatracer.535924.535924.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nYDQIHFVLNTVc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_total_Slot2-39_1_8060_diatracer.538041.538041.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nGPEGSVTGELGPGNKc[61], unknown mods may exist in spectrum 20240927_SW-KF_S2_total_Slot2-39_1_8060_diatracer.538317.538317.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nLQVENSSLPQADEIQVIEEADEEEc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_total_Slot2-39_1_8060_diatracer.538596.538596.4 [INFO:] Please specify modification and rerun PTMProphet ... ​ [INFO:] written 98000/199305 spectrum_queries [ERROR:] Cannot initialize for sequence: nWLNVLTVVC[160]LDc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_total_Slot2-39_1_8060_diatracer.542033.542033.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nQVEEGSLDLDELSSSAAAKAc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_total_Slot2-39_1_8060_diatracer.543663.543663.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nVEEGEASLPSPAMTLSSAIDc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_total_Slot2-39_1_8060_diatracer.545467.545467.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nMSPGYLEVFADEc[61], unknown mods may exist in spectrum 20240927_SW-KF_S2_total_Slot2-39_1_8060_diatracer.545722.545722.2 [INFO:] Please specify modification and rerun PTMProphet ... ​ [INFO:] written 99000/199305 spectrum_queries [ERROR:] Cannot initialize for sequence: nYYEC[160]DVLPFME[172]IGSVAHKFYLLc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_total_Slot2-39_1_8060_diatracer.546488.546488.4 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nVEEGEASLPSPAMTLSSAIDc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_total_Slot2-39_1_8060_diatracer.547841.547841.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nLLLSNAVINELEc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_total_Slot2-39_1_8060_diatracer.548898.548898.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nESATLQPFFTLQLDIQSDc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_total_Slot2-39_1_8060_diatracer.549456.549456.3 [INFO:] Please specify modification and rerun PTMProphet ... ​ [INFO:] written 100000/199305 spectrum_queries [ERROR:] Cannot initialize for sequence: nQVIEDKRYVALc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_total_Slot2-39_1_8060_diatracer.551391.551391.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nGFSC[160]LSLLNSWDc[61], unknown mods may exist in spectrum 20240927_SW-KF_S2_total_Slot2-39_1_8060_diatracer.552429.552429.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nNMVLLVYFQFDAAIPLC[160]c[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_total_Slot2-39_1_8060_diatracer.555082.555082.3 [INFO:] Please specify modification and rerun PTMProphet ... ​ [INFO:] written 101000/199305 spectrum_queries [ERROR:] Cannot initialize for sequence: nAVLKWADGETADQTLSLMEc[61], unknown mods may exist in spectrum 20240927_SW-KF_S2_total_Slot2-39_1_8060_diatracer.558244.558244.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nSVAAAVGGALFDKLFSWAHDGc[61], unknown mods may exist in spectrum 20240927_SW-KF_S2_total_Slot2-39_1_8060_diatracer.559526.559526.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nGPNHAVSTAC[160]TTGAHAVGDSFc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_total_Slot2-39_1_8060_diatracer.561356.561356.3 [INFO:] Please specify modification and rerun PTMProphet ... ​ [INFO:] written 102000/199305 spectrum_queries [ERROR:] Cannot initialize for sequence: nLM[147]LQDNC[160]C[160]GVNGPSDWQc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_total_Slot2-39_1_8060_diatracer.562172.562172.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nLADQAVSLYDKLc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_total_Slot2-39_1_8060_diatracer.563646.563646.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nGPNHAVSTAC[160]TTGAHAVGDSFc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_total_Slot2-39_1_8060_diatracer.563722.563722.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nGPEGSVTGELGPGNKc[61], unknown mods may exist in spectrum 20240927_SW-KF_S2_total_Slot2-39_1_8060_diatracer.564395.564395.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nTYLILETDTLEc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_total_Slot2-39_1_8060_diatracer.564758.564758.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nYYEC[160]DVLPFME[172]IGSVAHKFYLLc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_total_Slot2-39_1_8060_diatracer.565443.565443.4 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nALGSLVPQIAPVGC[160]c[61], unknown mods may exist in spectrum 20240927_SW-KF_S2_total_Slot2-39_1_8060_diatracer.566081.566081.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nSARAGGLLVAAMSAFLGIAPSPc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_total_Slot2-39_1_8060_diatracer.566123.566123.3 [INFO:] Please specify modification and rerun PTMProphet ... ​ [INFO:] written 103000/199305 spectrum_queries [ERROR:] Cannot initialize for sequence: nIEGEIDPSPETLADALSLDAc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_total_Slot2-39_1_8060_diatracer.568299.568299.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nSVAAAVGGALFDKLFSWAHDGc[61], unknown mods may exist in spectrum 20240927_SW-KF_S2_total_Slot2-39_1_8060_diatracer.569011.569011.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nTIMEHTLNHPYc[61], unknown mods may exist in spectrum 20240927_SW-KF_S2_total_Slot2-39_1_8060_diatracer.571692.571692.2 [INFO:] Please specify modification and rerun PTMProphet ... ​ [INFO:] written 104000/199305 spectrum_queries [ERROR:] Cannot initialize for sequence: nPNRGSC[160]AGADEPGVc[61], unknown mods may exist in spectrum 20240927_SW-KF_S2_total_Slot2-39_1_8060_diatracer.572940.572940.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nC[160]PILPSTLGASGC[160]WWC[160]C[160]AC[160]C[160]GWRc[61], unknown mods may exist in spectrum 20240927_SW-KF_S2_total_Slot2-39_1_8060_diatracer.573230.573230.4 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nQDQC[160]C[160]TTC[160]VVQc[61], unknown mods may exist in spectrum 20240927_SW-KF_S2_total_Slot2-39_1_8060_diatracer.573681.573681.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nEPGLGASGPAAVQVSc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_total_Slot2-39_1_8060_diatracer.574091.574091.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nNHLAGEAQVc[61], unknown mods may exist in spectrum 20240927_SW-KF_S2_total_Slot2-39_1_8060_diatracer.575278.575278.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nVYASFALC[160]M[147]FVAc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_total_Slot2-39_1_8060_diatracer.575316.575316.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nSSSSPALPTAGNC[160]TSc[61], unknown mods may exist in spectrum 20240927_SW-KF_S2_total_Slot2-39_1_8060_diatracer.575346.575346.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nGGTAGSALSC[160]c[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_total_Slot2-39_1_8060_diatracer.576274.576274.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nIQC[160]AAGYEQSEHNVC[160]Qc[61], unknown mods may exist in spectrum 20240927_SW-KF_S2_total_Slot2-39_1_8060_diatracer.576310.576310.4 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nLPMPALSLPTRWc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_total_Slot2-39_1_8060_diatracer.576661.576661.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nILQGGVGIPHIRMc[61], unknown mods may exist in spectrum 20240927_SW-KF_S2_total_Slot2-39_1_8060_diatracer.577678.577678.3 [INFO:] Please specify modification and rerun PTMProphet ... ​ [INFO:] written 105000/199305 spectrum_queries [ERROR:] Cannot initialize for sequence: nHETVVSLAAEGQYc[61], unknown mods may exist in spectrum 20240927_SW-KF_S2_total_Slot2-39_1_8060_diatracer.579545.579545.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nYPVVPVHLDTTIc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_total_Slot2-39_1_8060_diatracer.579560.579560.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nELHIQYLSHLLQRNFc[61], unknown mods may exist in spectrum 20240927_SW-KF_S2_total_Slot2-39_1_8060_diatracer.580052.580052.4 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nFNAIALSAAc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_total_Slot2-39_1_8060_diatracer.582941.582941.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nEVTVTPNAAWGGEGc[61], unknown mods may exist in spectrum 20240927_SW-KF_S2_total_Slot2-39_1_8060_diatracer.584150.584150.3 [INFO:] Please specify modification and rerun PTMProphet ... ​ [INFO:] written 106000/199305 spectrum_queries [ERROR:] Cannot initialize for sequence: nLGGPPKSGEPc[61], unknown mods may exist in spectrum 20240927_SW-KF_S2_total_Slot2-39_1_8060_diatracer.585228.585228.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nAPGPAEGLILSAC[160]GAc[61], unknown mods may exist in spectrum 20240927_SW-KF_S2_total_Slot2-39_1_8060_diatracer.585939.585939.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nVPC[160]SFVVEGGGGPPc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_total_Slot2-39_1_8060_diatracer.586160.586160.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nPGLSSWPC[160]c[61], unknown mods may exist in spectrum 20240927_SW-KF_S2_total_Slot2-39_1_8060_diatracer.587400.587400.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nPLYTLLVDc[61], unknown mods may exist in spectrum 20240927_SW-KF_S2_total_Slot2-39_1_8060_diatracer.588456.588456.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nGVHGHFPTAFNEGAc[61], unknown mods may exist in spectrum 20240927_SW-KF_S2_total_Slot2-39_1_8060_diatracer.588822.588822.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nPGLSSWPC[160]c[61], unknown mods may exist in spectrum 20240927_SW-KF_S2_total_Slot2-39_1_8060_diatracer.589074.589074.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nLC[160]GTFLGGPKPPQc[61], unknown mods may exist in spectrum 20240927_SW-KF_S2_total_Slot2-39_1_8060_diatracer.589085.589085.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nGVSSPAPPGPc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_total_Slot2-39_1_8060_diatracer.589304.589304.2 [INFO:] Please specify modification and rerun PTMProphet ... ​ [INFO:] written 107000/199305 spectrum_queries [ERROR:] Cannot initialize for sequence: nLEAEGLIDc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_total_Slot2-39_1_8060_diatracer.590829.590829.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nFSGERSGGGLHSDGc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_total_Slot2-39_1_8060_diatracer.591323.591323.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nGDVGPADVEc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_total_Slot2-39_1_8060_diatracer.592287.592287.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nPNRGSC[160]AGADEPGVc[61], unknown mods may exist in spectrum 20240927_SW-KF_S2_total_Slot2-39_1_8060_diatracer.594192.594192.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nLYKEYLQM[147]AQNGSFQc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_total_Slot2-39_1_8060_diatracer.594655.594655.4 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nEQAAWPGSGAGAAAAAc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_total_Slot2-39_1_8060_diatracer.595183.595183.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nTQPLGFSTGc[61], unknown mods may exist in spectrum 20240927_SW-KF_S2_total_Slot2-39_1_8060_diatracer.595932.595932.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nGILGAEYAEc[61], unknown mods may exist in spectrum 20240927_SW-KF_S2_total_Slot2-39_1_8060_diatracer.596160.596160.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nDFEWDPSLTEVAc[61], unknown mods may exist in spectrum 20240927_SW-KF_S2_total_Slot2-39_1_8060_diatracer.596508.596508.3 [INFO:] Please specify modification and rerun PTMProphet ... ​ [INFO:] written 108000/199305 spectrum_queries [ERROR:] Cannot initialize for sequence: nSVQGAIMPDQLLASc[61], unknown mods may exist in spectrum 20240927_SW-KF_S2_total_Slot2-39_1_8060_diatracer.596908.596908.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nEGRQAGPAGAVAAPAAc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_total_Slot2-39_1_8060_diatracer.596940.596940.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nPAATTAKAGAVGQTAGc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_total_Slot2-39_1_8060_diatracer.598019.598019.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nELGGLGEARc[61], unknown mods may exist in spectrum 20240927_SW-KF_S2_total_Slot2-39_1_8060_diatracer.599066.599066.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nENALSYTAc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_total_Slot2-39_1_8060_diatracer.599365.599365.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nAGDSGAKVFLEVQPQEEAc[61], unknown mods may exist in spectrum 20240927_SW-KF_S2_total_Slot2-39_1_8060_diatracer.601221.601221.4 [INFO:] Please specify modification and rerun PTMProphet ... ​ [INFO:] written 109000/199305 spectrum_queries [ERROR:] Cannot initialize for sequence: nENILQFAGc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_total_Slot2-39_1_8060_diatracer.605126.605126.2 [INFO:] Please specify modification and rerun PTMProphet ... ​ [INFO:] written 110000/199305 spectrum_queries [ERROR:] Cannot initialize for sequence: nGAAAAGGGGGGAAAc[61], unknown mods may exist in spectrum 20240927_SW-KF_S2_total_Slot2-39_1_8060_diatracer.609681.609681.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nFFFNIFTc[61], unknown mods may exist in spectrum 20240927_SW-KF_S2_total_Slot2-39_1_8060_diatracer.610147.610147.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nKLDALNMVc[61], unknown mods may exist in spectrum 20240927_SW-KF_S2_total_Slot2-39_1_8060_diatracer.610879.610879.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nGGTAGSALSC[160]c[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_total_Slot2-39_1_8060_diatracer.611397.611397.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nPLEMAWSVALVLALTVTPGPGARc[61], unknown mods may exist in spectrum 20240927_SW-KF_S2_total_Slot2-39_1_8060_diatracer.612772.612772.2 [INFO:] Please specify modification and rerun PTMProphet ... ​ [INFO:] written 111000/199305 spectrum_queries [ERROR:] Cannot initialize for sequence: nAPGAEGLGHSGGPLHC[160]LGGVc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_total_Slot2-39_1_8060_diatracer.620098.620098.2 [INFO:] Please specify modification and rerun PTMProphet ... ​ [INFO:] written 112000/199305 spectrum_queries [ERROR:] Cannot initialize for sequence: nINTLEELGVLLVMAGFVc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_total_Slot2-39_1_8060_diatracer.625170.625170.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nAEPPQC[160]TSLAWSADGQVSGSVLSGDSASSc[61], unknown mods may exist in spectrum 20240927_SW-KF_S2_total_Slot2-39_1_8060_diatracer.625666.625666.3 [INFO:] Please specify modification and rerun PTMProphet ... ​ [INFO:] written 113000/199305 spectrum_queries [ERROR:] Cannot initialize for sequence: nDAPMQAGVPWLLLTPSGSc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_total_Slot2-39_1_8060_diatracer.626790.626790.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nVC[160]IAQDSQTAVC[160]ISHRc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_total_Slot2-39_1_8060_diatracer.631407.631407.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nELNRFDGSGPYSTLSSPQLGRSTYMETYVYFYc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_total_Slot2-39_1_8060_diatracer.632943.632943.4 [INFO:] Please specify modification and rerun PTMProphet ... ​ [INFO:] written 114000/199305 spectrum_queries [ERROR:] Cannot initialize for sequence: nVDLLLVM[147]GTSLQGRGLAGc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_total_Slot2-39_1_8060_diatracer.636403.636403.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nDAPMQAGVPWLLLTPSGSc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_total_Slot2-39_1_8060_diatracer.637957.637957.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nVDLLLVM[147]GTSLQGRGLAGc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_total_Slot2-39_1_8060_diatracer.638644.638644.2 [INFO:] Please specify modification and rerun PTMProphet ... ​ [INFO:] written 115000/199305 spectrum_queries [ERROR:] Cannot initialize for sequence: nSSAPFSPPSGPPEKc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_total_Slot2-39_1_8060_diatracer.643973.643973.2 [INFO:] Please specify modification and rerun PTMProphet ... ​ [INFO:] written 116000/199305 spectrum_queries [ERROR:] Cannot initialize for sequence: nSPISHEESRLLQLLNKALPc[61], unknown mods may exist in spectrum 20240927_SW-KF_S2_total_Slot2-39_1_8060_diatracer.646045.646045.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nSVASGTVSHQAATIRDTLSQGSc[61], unknown mods may exist in spectrum 20240927_SW-KF_S2_total_Slot2-39_1_8060_diatracer.646702.646702.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nSPEATSPTHIATLPPPWSHTc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_total_Slot2-39_1_8060_diatracer.648651.648651.3 [INFO:] Please specify modification and rerun PTMProphet ... ​ [INFO:] written 117000/199305 spectrum_queries [ERROR:] Cannot initialize for sequence: nELDENHYQLELc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_total_Slot2-39_1_8060_diatracer.651554.651554.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nLLEAHEEQNVDSc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_total_Slot2-39_1_8060_diatracer.652886.652886.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nLYDEIFISSEPNc[61], unknown mods may exist in spectrum 20240927_SW-KF_S2_total_Slot2-39_1_8060_diatracer.653022.653022.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: n[43]QSGLAGGGPPAGC[160]ASAc[61], unknown mods may exist in spectrum 20240927_SW-KF_S2_total_Slot2-39_1_8060_diatracer.653994.653994.2 [INFO:] Please specify modification and rerun PTMProphet ... ​ [INFO:] written 118000/199305 spectrum_queries [ERROR:] Cannot initialize for sequence: nVVSQSGQQGTWDFc[61], unknown mods may exist in spectrum 20240927_SW-KF_S2_total_Slot2-39_1_8060_diatracer.660214.660214.2 [INFO:] Please specify modification and rerun PTMProphet ... ​ [INFO:] written 119000/199305 spectrum_queries [ERROR:] Cannot initialize for sequence: nVLAQEAGAAESGGGGAASAFPWLGRAKSGSAGc[61], unknown mods may exist in spectrum 20240927_SW-KF_S2_total_Slot2-39_1_8060_diatracer.661616.661616.4 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nVSFPTPTLAPSPFc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_total_Slot2-39_1_8060_diatracer.663077.663077.2 [INFO:] Please specify modification and rerun PTMProphet ... ​ [INFO:] written 120000/199305 spectrum_queries [ERROR:] Cannot initialize for sequence: nSSAPFSPPSGPPEKc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_total_Slot2-39_1_8060_diatracer.666435.666435.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nPNSVSTAAGKEVSDc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_total_Slot2-39_1_8060_diatracer.667419.667419.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nSVASGTVSHQAATIRDTLSQGSc[61], unknown mods may exist in spectrum 20240927_SW-KF_S2_total_Slot2-39_1_8060_diatracer.668981.668981.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nNVM[147]LENFTLLASLAGLC[160]DLc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_total_Slot2-39_1_8060_diatracer.670376.670376.3 [INFO:] Please specify modification and rerun PTMProphet ... ​ [INFO:] written 121000/199305 spectrum_queries [ERROR:] Cannot initialize for sequence: nPSNAYLSDSYAPPc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_total_Slot2-39_1_8060_diatracer.672828.672828.2 [INFO:] Please specify modification and rerun PTMProphet ... ​ [INFO:] written 122000/199305 spectrum_queries [ERROR:] Cannot initialize for sequence: nLLEAHEEQNVDSc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_total_Slot2-39_1_8060_diatracer.677397.677397.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nDTGIAAMRQQQPNc[61], unknown mods may exist in spectrum 20240927_SW-KF_S2_total_Slot2-39_1_8060_diatracer.677541.677541.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nAPSSSLGAFFAGDLPPPLQAGAAc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_total_Slot2-39_1_8060_diatracer.680413.680413.3 [INFO:] Please specify modification and rerun PTMProphet ... ​ [INFO:] written 123000/199305 spectrum_queries [ERROR:] Cannot initialize for sequence: nQELGDGLDDEIAVc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_total_Slot2-39_1_8060_diatracer.683628.683628.2 [INFO:] Please specify modification and rerun PTMProphet ... ​ [INFO:] written 124000/199305 spectrum_queries [ERROR:] Cannot initialize for sequence: nDILHLADLPGQKPYLVGEC[160]c[61], unknown mods may exist in spectrum 20240927_SW-KF_S2_total_Slot2-39_1_8060_diatracer.690220.690220.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nYQLFFFSFLWc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_total_Slot2-39_1_8060_diatracer.691429.691429.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nQESEGSDLLEVNFVLHGHEc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_total_Slot2-39_1_8060_diatracer.691460.691460.3 [INFO:] Please specify modification and rerun PTMProphet ... ​ [INFO:] written 125000/199305 spectrum_queries [ERROR:] Cannot initialize for sequence: nKGDGGGAGGGGGGGc[61], unknown mods may exist in spectrum 20240927_SW-KF_S2_total_Slot2-39_1_8060_diatracer.694348.694348.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nAVAEDPVAAAc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_total_Slot2-39_1_8060_diatracer.694505.694505.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nPVAGLDIPPASPWVc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_total_Slot2-39_1_8060_diatracer.694553.694553.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nEEVPPPEGEc[61], unknown mods may exist in spectrum 20240927_SW-KF_S2_total_Slot2-39_1_8060_diatracer.695316.695316.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nLVENDVAGIDVNM[147]Gc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_total_Slot2-39_1_8060_diatracer.695578.695578.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nVSGAAAM[147]SSLc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_total_Slot2-39_1_8060_diatracer.696065.696065.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nLNSDSVNPNc[61], unknown mods may exist in spectrum 20240927_SW-KF_S2_total_Slot2-39_1_8060_diatracer.696366.696366.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nLSVAQFGEFSGITSc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_total_Slot2-39_1_8060_diatracer.697150.697150.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nPALAAGPAALLAALLAC[160]GVALc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_total_Slot2-39_1_8060_diatracer.698334.698334.4 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nHNWGQGFRLGDQc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_total_Slot2-39_1_8060_diatracer.698453.698453.3 [INFO:] Please specify modification and rerun PTMProphet ... ​ [INFO:] written 126000/199305 spectrum_queries [ERROR:] Cannot initialize for sequence: nHILDGTAEEc[61], unknown mods may exist in spectrum 20240927_SW-KF_S2_total_Slot2-39_1_8060_diatracer.699308.699308.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nM[147]AATVGIPTIPLPRc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_total_Slot2-39_1_8060_diatracer.699334.699334.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nWDAQAVMGAc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_total_Slot2-39_1_8060_diatracer.699583.699583.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nVEDYEPYPDDGM[147]Gc[61], unknown mods may exist in spectrum 20240927_SW-KF_S2_total_Slot2-39_1_8060_diatracer.699785.699785.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nIHVLPEGVAc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_total_Slot2-39_1_8060_diatracer.701101.701101.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nPTITNDRSAPLIRc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_total_Slot2-39_1_8060_diatracer.701368.701368.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nEIHPAAEAC[160]c[61], unknown mods may exist in spectrum 20240927_SW-KF_S2_total_Slot2-39_1_8060_diatracer.702040.702040.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nQVAAQAVTDPc[61], unknown mods may exist in spectrum 20240927_SW-KF_S2_total_Slot2-39_1_8060_diatracer.704008.704008.2 [INFO:] Please specify modification and rerun PTMProphet ... ​ [INFO:] written 127000/199305 spectrum_queries [ERROR:] Cannot initialize for sequence: nPDTDMRPDTDMRc[61], unknown mods may exist in spectrum 20240927_SW-KF_S2_total_Slot2-39_1_8060_diatracer.704302.704302.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nQTPGC[160]RADPGWGLc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_total_Slot2-39_1_8060_diatracer.706185.706185.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nDGVSSC[160]WPGc[61], unknown mods may exist in spectrum 20240927_SW-KF_S2_total_Slot2-39_1_8060_diatracer.706765.706765.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nYLPGYYSEKLEAIQLDGc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_total_Slot2-39_1_8060_diatracer.707040.707040.4 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nLM[147]AQNAGMMGIGPSQc[61], unknown mods may exist in spectrum 20240927_SW-KF_S2_total_Slot2-39_1_8060_diatracer.708079.708079.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nVLGAPHGQSPQLAPNc[61], unknown mods may exist in spectrum 20240927_SW-KF_S2_total_Slot2-39_1_8060_diatracer.709089.709089.3 [INFO:] Please specify modification and rerun PTMProphet ... ​ [INFO:] written 128000/199305 spectrum_queries [ERROR:] Cannot initialize for sequence: n[43]MSVDLPGEYDSSFHPSTc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_total_Slot2-39_1_8060_diatracer.710425.710425.4 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nQTGTSSLSFc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_total_Slot2-39_1_8060_diatracer.710852.710852.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nPQSAQISAGNTSERc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_total_Slot2-39_1_8060_diatracer.711173.711173.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nQYKC[160]DEC[160]GKASTc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_total_Slot2-39_1_8060_diatracer.711346.711346.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nPEGGGAPGAAQAc[61], unknown mods may exist in spectrum 20240927_SW-KF_S2_total_Slot2-39_1_8060_diatracer.711570.711570.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nAGASFFSWIQHRc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_total_Slot2-39_1_8060_diatracer.712396.712396.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nEVFQIASNc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_total_Slot2-39_1_8060_diatracer.714208.714208.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nSPPPAPEPHc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_total_Slot2-39_1_8060_diatracer.714784.714784.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nKPLELSSGHc[61], unknown mods may exist in spectrum 20240927_SW-KF_S2_total_Slot2-39_1_8060_diatracer.715047.715047.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nFTGSVPPAEAc[61], unknown mods may exist in spectrum 20240927_SW-KF_S2_total_Slot2-39_1_8060_diatracer.715221.715221.2 [INFO:] Please specify modification and rerun PTMProphet ... ​ [INFO:] written 129000/199305 spectrum_queries [ERROR:] Cannot initialize for sequence: nQVAAQAVTDPc[61], unknown mods may exist in spectrum 20240927_SW-KF_S2_total_Slot2-39_1_8060_diatracer.716082.716082.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nHNWGQGFRLGDQc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_total_Slot2-39_1_8060_diatracer.716573.716573.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nVGSVLE[172]EVAAAAEGGVc[61], unknown mods may exist in spectrum 20240927_SW-KF_S2_total_Slot2-39_1_8060_diatracer.717441.717441.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nTSPAAPQQTPc[61], unknown mods may exist in spectrum 20240927_SW-KF_S2_total_Slot2-39_1_8060_diatracer.718071.718071.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nGSIVHSDALHFIKc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_total_Slot2-39_1_8060_diatracer.718780.718780.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nPLLSQEVNAc[61], unknown mods may exist in spectrum 20240927_SW-KF_S2_total_Slot2-39_1_8060_diatracer.720991.720991.2 [INFO:] Please specify modification and rerun PTMProphet ... ​ [INFO:] written 130000/199305 spectrum_queries [ERROR:] Cannot initialize for sequence: nPEGGGAPGAAQAc[61], unknown mods may exist in spectrum 20240927_SW-KF_S2_total_Slot2-39_1_8060_diatracer.721628.721628.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nEAAFGGGLLSPGPEATc[61], unknown mods may exist in spectrum 20240927_SW-KF_S2_total_Slot2-39_1_8060_diatracer.724847.724847.3 [INFO:] Please specify modification and rerun PTMProphet ... ​ [INFO:] written 131000/199305 spectrum_queries [ERROR:] Cannot initialize for sequence: nETYGAKDIAEKVLc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_total_Slot2-39_1_8060_diatracer.729357.729357.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nAIPSSPSSPAc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_total_Slot2-39_1_8060_diatracer.730485.730485.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nLSVAQFGEFSGITSc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_total_Slot2-39_1_8060_diatracer.731385.731385.3 [INFO:] Please specify modification and rerun PTMProphet ... ​ [INFO:] written 132000/199305 spectrum_queries [ERROR:] Cannot initialize for sequence: nEVLGLPDEESIKEc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_total_Slot2-39_1_8060_diatracer.733741.733741.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nEKFQTQLPLHEPc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_total_Slot2-39_1_8060_diatracer.735895.735895.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nLEGHQSSVVc[61], unknown mods may exist in spectrum 20240927_SW-KF_S2_total_Slot2-39_1_8060_diatracer.736511.736511.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nGQGTMNPPHc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_total_Slot2-39_1_8060_diatracer.737564.737564.2 [INFO:] Please specify modification and rerun PTMProphet ... ​ [INFO:] written 133000/199305 spectrum_queries [ERROR:] Cannot initialize for sequence: nVSGAAAM[147]SSLc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_total_Slot2-39_1_8060_diatracer.738370.738370.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nKLELDVPAAc[61], unknown mods may exist in spectrum 20240927_SW-KF_S2_total_Slot2-39_1_8060_diatracer.738642.738642.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nKPLELSSGHc[61], unknown mods may exist in spectrum 20240927_SW-KF_S2_total_Slot2-39_1_8060_diatracer.739226.739226.2 [INFO:] Please specify modification and rerun PTMProphet ... ​ [INFO:] written 135000/199305 spectrum_queries [ERROR:] Cannot initialize for sequence: nQDLPSSLPEPETQAPPRSc[61], unknown mods may exist in spectrum 20240927_SW-KF_S2_total_Slot2-39_1_8060_diatracer.753435.753435.2 [INFO:] Please specify modification and rerun PTMProphet ... ​ [INFO:] written 136000/199305 spectrum_queries [ERROR:] Cannot initialize for sequence: nQEFGWLIPMGTADISVYc[61], unknown mods may exist in spectrum 20240927_SW-KF_S2_total_Slot2-39_1_8060_diatracer.760650.760650.2 [INFO:] Please specify modification and rerun PTMProphet ... ​ [INFO:] written 137000/199305 spectrum_queries [ERROR:] Cannot initialize for sequence: nDQGLQINVc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_total_Slot2-39_1_8060_diatracer.764960.764960.1 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nGFNPPLTFNFPASANHAEc[61], unknown mods may exist in spectrum 20240927_SW-KF_S2_total_Slot2-39_1_8060_diatracer.765547.765547.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nAGITPVAVAGPSTPLEADLKPSQTPQPKDKc[61], unknown mods may exist in spectrum 20240927_SW-KF_S2_total_Slot2-39_1_8060_diatracer.767478.767478.4 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nTEIGLLSDPNGFSGFLHKQAVc[61], unknown mods may exist in spectrum 20240927_SW-KF_S2_total_Slot2-39_1_8060_diatracer.768992.768992.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nLNGAASWTEITEGEc[61], unknown mods may exist in spectrum 20240927_SW-KF_S2_total_Slot2-39_1_8060_diatracer.769102.769102.2 [INFO:] Please specify modification and rerun PTMProphet ... ​ [INFO:] written 138000/199305 spectrum_queries [ERROR:] Cannot initialize for sequence: nPAQVGDSFGPTSLADGGPAGSGWSc[61], unknown mods may exist in spectrum 20240927_SW-KF_S2_total_Slot2-39_1_8060_diatracer.770540.770540.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nSATDADVVNSGWEGc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_total_Slot2-39_1_8060_diatracer.772320.772320.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nLGQDALGELIFLHc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_total_Slot2-39_1_8060_diatracer.773220.773220.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nWWNNLSDGQRTVTGSC[160]GPSPc[61], unknown mods may exist in spectrum 20240927_SW-KF_S2_total_Slot2-39_1_8060_diatracer.774980.774980.3 [INFO:] Please specify modification and rerun PTMProphet ... ​ [INFO:] written 139000/199305 spectrum_queries [ERROR:] Cannot initialize for sequence: nDDIILFSGKVSC[160]Pc[61], unknown mods may exist in spectrum 20240927_SW-KF_S2_total_Slot2-39_1_8060_diatracer.776732.776732.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nVC[160]AVSPGDSPIVSKc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_total_Slot2-39_1_8060_diatracer.776955.776955.2 [INFO:] Please specify modification and rerun PTMProphet ... ​ [INFO:] written 140000/199305 spectrum_queries [ERROR:] Cannot initialize for sequence: nTEIGLLSDPNGFSGFLHKQAVc[61], unknown mods may exist in spectrum 20240927_SW-KF_S2_total_Slot2-39_1_8060_diatracer.784203.784203.3 [INFO:] Please specify modification and rerun PTMProphet ... ​ [INFO:] written 141000/199305 spectrum_queries [ERROR:] Cannot initialize for sequence: nQNSVPPSQTKSETSc[61], unknown mods may exist in spectrum 20240927_SW-KF_S2_total_Slot2-39_1_8060_diatracer.788856.788856.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nLGQDALGELIFLHc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_total_Slot2-39_1_8060_diatracer.790239.790239.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nELQQVTAGEAASIHc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_total_Slot2-39_1_8060_diatracer.791320.791320.2 [INFO:] Please specify modification and rerun PTMProphet ... ​ [INFO:] written 142000/199305 spectrum_queries [ERROR:] Cannot initialize for sequence: nLTIAFQAKDVEGSTSPQIGDKc[61], unknown mods may exist in spectrum 20240927_SW-KF_S2_total_Slot2-39_1_8060_diatracer.793838.793838.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nQNQLFLFDLLSLLLMIQRc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_total_Slot2-39_1_8060_diatracer.795127.795127.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nLDEYSPARFDC[160]GDC[160]QLVEc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_total_Slot2-39_1_8060_diatracer.796169.796169.3 [INFO:] Please specify modification and rerun PTMProphet ... ​ [INFO:] written 143000/199305 spectrum_queries [ERROR:] Cannot initialize for sequence: nAASTPAAPPPPGAPGPAPGPAGGAAAAAc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_total_Slot2-39_1_8060_diatracer.797479.797479.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nNFLIC[160]FLSSFSIc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_total_Slot2-39_1_8060_diatracer.797583.797583.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nVTISSRLVSSPC[160]RIVTSTYSc[61], unknown mods may exist in spectrum 20240927_SW-KF_S2_total_Slot2-39_1_8060_diatracer.798272.798272.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nISEGFELLNSGQSIRTVLTFc[61], unknown mods may exist in spectrum 20240927_SW-KF_S2_total_Slot2-39_1_8060_diatracer.800338.800338.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nFFILWYLGTGVTc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_total_Slot2-39_1_8060_diatracer.800480.800480.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nETEAAYESDIPEEc[61], unknown mods may exist in spectrum 20240927_SW-KF_S2_total_Slot2-39_1_8060_diatracer.801361.801361.2 [INFO:] Please specify modification and rerun PTMProphet ... ​ [INFO:] written 144000/199305 spectrum_queries [ERROR:] Cannot initialize for sequence: nSATDADVVNSGWEGc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_total_Slot2-39_1_8060_diatracer.802095.802095.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nGGSATAAAVAASGGFGGGGSGASPGSGGGGGGGHKQPAc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_total_Slot2-39_1_8060_diatracer.802572.802572.4 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nLGQDALGELIFLHc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_total_Slot2-39_1_8060_diatracer.802807.802807.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nSSQLDTLAVELGQAc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_total_Slot2-39_1_8060_diatracer.803228.803228.2 [INFO:] Please specify modification and rerun PTMProphet ... ​ [INFO:] written 145000/199305 spectrum_queries [ERROR:] Cannot initialize for sequence: nIDYSAAVIYD[158]FLAVD[158]DINGc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_total_Slot2-39_1_8060_diatracer.810710.810710.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nC[160]SVRLSVPVSEGYc[61], unknown mods may exist in spectrum 20240927_SW-KF_S2_total_Slot2-39_1_8060_diatracer.810715.810715.2 [INFO:] Please specify modification and rerun PTMProphet ... ​ [INFO:] written 146000/199305 spectrum_queries [ERROR:] Cannot initialize for sequence: nLFLSQAGAGSTC[160]QINTSVC[160]Lc[61], unknown mods may exist in spectrum 20240927_SW-KF_S2_total_Slot2-39_1_8060_diatracer.816802.816802.4 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nIFPDDMINSHNTKc[61], unknown mods may exist in spectrum 20240927_SW-KF_S2_total_Slot2-39_1_8060_diatracer.817115.817115.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: n[43]MQSGLAGGGPPAGC[160]ASAc[61], unknown mods may exist in spectrum 20240927_SW-KF_S2_total_Slot2-39_1_8060_diatracer.817207.817207.3 [INFO:] Please specify modification and rerun PTMProphet ... ​ [INFO:] written 147000/199305 spectrum_queries [ERROR:] Cannot initialize for sequence: nATLTRDFYLFPGNc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_total_Slot2-39_1_8060_diatracer.818400.818400.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nAGETEAPISALSSAHAc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_total_Slot2-39_1_8060_diatracer.818419.818419.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nDHLSPLSSSMPFWc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_total_Slot2-39_1_8060_diatracer.820191.820191.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nKDTDEVFSSc[61], unknown mods may exist in spectrum 20240927_SW-KF_S2_total_Slot2-39_1_8060_diatracer.822920.822920.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nGRNAVLGGQATc[61], unknown mods may exist in spectrum 20240927_SW-KF_S2_total_Slot2-39_1_8060_diatracer.823646.823646.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nLVIQSYFGKQILHc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_total_Slot2-39_1_8060_diatracer.823923.823923.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nTEEKTSSTDLSDIPAc[61], unknown mods may exist in spectrum 20240927_SW-KF_S2_total_Slot2-39_1_8060_diatracer.823939.823939.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nKAVAEELAKc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_total_Slot2-39_1_8060_diatracer.824048.824048.2 [INFO:] Please specify modification and rerun PTMProphet ... ​ [INFO:] written 148000/199305 spectrum_queries [ERROR:] Cannot initialize for sequence: nSSSKSWKQIELDSc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_total_Slot2-39_1_8060_diatracer.824496.824496.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nLVIQSYFGKQILHc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_total_Slot2-39_1_8060_diatracer.826216.826216.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nSFGPAVIM[147]GNc[61], unknown mods may exist in spectrum 20240927_SW-KF_S2_total_Slot2-39_1_8060_diatracer.829026.829026.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nDHLSPLSSSMPFWc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_total_Slot2-39_1_8060_diatracer.829353.829353.3 [INFO:] Please specify modification and rerun PTMProphet ... ​ [INFO:] written 149000/199305 spectrum_queries [ERROR:] Cannot initialize for sequence: nSWMSKDEGQPTPWc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_total_Slot2-39_1_8060_diatracer.830672.830672.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nDDLLHVQC[160]HRGETc[61], unknown mods may exist in spectrum 20240927_SW-KF_S2_total_Slot2-39_1_8060_diatracer.832857.832857.3 [INFO:] Please specify modification and rerun PTMProphet ... ​ [INFO:] written 150000/199305 spectrum_queries [ERROR:] Cannot initialize for sequence: nAIEHADGGVAAGVAVLDNPYPVc[61], unknown mods may exist in spectrum 20240927_SW-KF_S2_total_Slot2-39_1_8060_diatracer.835336.835336.4 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nQNPSGFGTQAc[61], unknown mods may exist in spectrum 20240927_SW-KF_S2_total_Slot2-39_1_8060_diatracer.835488.835488.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nGASMRPASQSC[160]GGTLc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_total_Slot2-39_1_8060_diatracer.835778.835778.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nGRNAVLGGQATc[61], unknown mods may exist in spectrum 20240927_SW-KF_S2_total_Slot2-39_1_8060_diatracer.837422.837422.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nNSFYVALERVSHEc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_total_Slot2-39_1_8060_diatracer.837739.837739.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nQNPSGFGTQAc[61], unknown mods may exist in spectrum 20240927_SW-KF_S2_total_Slot2-39_1_8060_diatracer.837884.837884.2 [INFO:] Please specify modification and rerun PTMProphet ... ​ [INFO:] written 151000/199305 spectrum_queries [ERROR:] Cannot initialize for sequence: nYVAFLGHLRSLGASGc[61], unknown mods may exist in spectrum 20240927_SW-KF_S2_total_Slot2-39_1_8060_diatracer.840995.840995.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nVEQLGILDKc[61], unknown mods may exist in spectrum 20240927_SW-KF_S2_total_Slot2-39_1_8060_diatracer.843036.843036.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nYVAFLGHLRSLGASGc[61], unknown mods may exist in spectrum 20240927_SW-KF_S2_total_Slot2-39_1_8060_diatracer.843295.843295.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nHSTVQHSYSc[61], unknown mods may exist in spectrum 20240927_SW-KF_S2_total_Slot2-39_1_8060_diatracer.844056.844056.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nILSNGSESIEMGEDc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_total_Slot2-39_1_8060_diatracer.844806.844806.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nPLPGDLGSVC[160]c[61], unknown mods may exist in spectrum 20240927_SW-KF_S2_total_Slot2-39_1_8060_diatracer.845646.845646.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nELSFTSAPFc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_total_Slot2-39_1_8060_diatracer.846407.846407.2 [INFO:] Please specify modification and rerun PTMProphet ... ​ [INFO:] written 152000/199305 spectrum_queries [ERROR:] Cannot initialize for sequence: nFASKNTVFGc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_total_Slot2-39_1_8060_diatracer.849668.849668.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nFTPGTFTNQIQAAFc[61], unknown mods may exist in spectrum 20240927_SW-KF_S2_total_Slot2-39_1_8060_diatracer.849863.849863.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nSDEFYGNQSc[61], unknown mods may exist in spectrum 20240927_SW-KF_S2_total_Slot2-39_1_8060_diatracer.851379.851379.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nTGAVAGDNKGLc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_total_Slot2-39_1_8060_diatracer.851440.851440.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nKAVAEELAKc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_total_Slot2-39_1_8060_diatracer.851613.851613.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nDAVLKVVEEc[61], unknown mods may exist in spectrum 20240927_SW-KF_S2_total_Slot2-39_1_8060_diatracer.851872.851872.2 [INFO:] Please specify modification and rerun PTMProphet ... ​ [INFO:] written 153000/199305 spectrum_queries [ERROR:] Cannot initialize for sequence: nNHLSSVPVGLPVDLQc[61], unknown mods may exist in spectrum 20240927_SW-KF_S2_total_Slot2-39_1_8060_diatracer.852978.852978.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nYSSGDQSDRc[61], unknown mods may exist in spectrum 20240927_SW-KF_S2_total_Slot2-39_1_8060_diatracer.854440.854440.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nLPLEVEKQLLMLSc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_total_Slot2-39_1_8060_diatracer.855176.855176.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nGGAGPHTASGASc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_total_Slot2-39_1_8060_diatracer.856542.856542.2 [INFO:] Please specify modification and rerun PTMProphet ... ​ [INFO:] written 154000/199305 spectrum_queries [ERROR:] Cannot initialize for sequence: nGGAGPHTASGASc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_total_Slot2-39_1_8060_diatracer.858840.858840.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nDPIKYSQYc[61], unknown mods may exist in spectrum 20240927_SW-KF_S2_total_Slot2-39_1_8060_diatracer.858868.858868.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nIEPAGMSSHVc[61], unknown mods may exist in spectrum 20240927_SW-KF_S2_total_Slot2-39_1_8060_diatracer.859538.859538.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nLEEGVGPLPM[147]ADPMSc[61], unknown mods may exist in spectrum 20240927_SW-KF_S2_total_Slot2-39_1_8060_diatracer.859649.859649.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nMADQSGGGLSSc[61], unknown mods may exist in spectrum 20240927_SW-KF_S2_total_Slot2-39_1_8060_diatracer.861315.861315.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nFTTPGSTAPVAGLRSSc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_total_Slot2-39_1_8060_diatracer.862902.862902.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nKRTYLILETDTLEc[61], unknown mods may exist in spectrum 20240927_SW-KF_S2_total_Slot2-39_1_8060_diatracer.862917.862917.3 [INFO:] Please specify modification and rerun PTMProphet ... ​ [INFO:] written 155000/199305 spectrum_queries [ERROR:] Cannot initialize for sequence: nDPIKYSQYc[61], unknown mods may exist in spectrum 20240927_SW-KF_S2_total_Slot2-39_1_8060_diatracer.863457.863457.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nNELGSSFHSc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_total_Slot2-39_1_8060_diatracer.863784.863784.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nDHLSPLSSSMPFWc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_total_Slot2-39_1_8060_diatracer.863808.863808.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nGFPAQEATAVc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_total_Slot2-39_1_8060_diatracer.864619.864619.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nDLHSFGAASNc[61], unknown mods may exist in spectrum 20240927_SW-KF_S2_total_Slot2-39_1_8060_diatracer.866273.866273.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nLTEASSSATYc[61], unknown mods may exist in spectrum 20240927_SW-KF_S2_total_Slot2-39_1_8060_diatracer.866416.866416.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nAEALTEPLNAc[61], unknown mods may exist in spectrum 20240927_SW-KF_S2_total_Slot2-39_1_8060_diatracer.866445.866445.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nDQPEAANGASAc[61], unknown mods may exist in spectrum 20240927_SW-KF_S2_total_Slot2-39_1_8060_diatracer.866548.866548.2 [INFO:] Please specify modification and rerun PTMProphet ... ​ [INFO:] written 157000/199305 spectrum_queries [ERROR:] Cannot initialize for sequence: nLAEDAPNFDGPAAE[172]GQPGQc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_total_Slot2-39_1_8060_diatracer.876176.876176.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nFAPSQHLD[202]EYPQPLPPc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_total_Slot2-39_1_8060_diatracer.877092.877092.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nC[160]PNLEFVGLMTIGSFGHDc[61], unknown mods may exist in spectrum 20240927_SW-KF_S2_total_Slot2-39_1_8060_diatracer.879323.879323.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nDEM[147]EKQEEASAAEPVEASc[61], unknown mods may exist in spectrum 20240927_SW-KF_S2_total_Slot2-39_1_8060_diatracer.879661.879661.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nNGQFVVFGAATFGLFTTTGc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_total_Slot2-39_1_8060_diatracer.881594.881594.2 [INFO:] Please specify modification and rerun PTMProphet ... ​ [INFO:] written 159000/199305 spectrum_queries [ERROR:] Cannot initialize for sequence: nPLNAFM[147]LYM[147]KEMc[61], unknown mods may exist in spectrum 20240927_SW-KF_S2_total_Slot2-39_1_8060_diatracer.890404.890404.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nSPNSSLGDFQSALNTGFLTKLLc[61], unknown mods may exist in spectrum 20240927_SW-KF_S2_total_Slot2-39_1_8060_diatracer.890783.890783.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nAGGALAAAGIQGGTSGPGAc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_total_Slot2-39_1_8060_diatracer.892932.892932.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nSPSDLLDASAVSATSRYIE[172]E[172]Qc[61], unknown mods may exist in spectrum 20240927_SW-KF_S2_total_Slot2-39_1_8060_diatracer.893071.893071.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nLQETVTPKQFLLIAIIMFLGc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_total_Slot2-39_1_8060_diatracer.893133.893133.3 [INFO:] Please specify modification and rerun PTMProphet ... ​ [INFO:] written 160000/199305 spectrum_queries [ERROR:] Cannot initialize for sequence: nTLDMHTEPSVTVQTPARLAAAAc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_total_Slot2-39_1_8060_diatracer.895038.895038.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nPC[160]TSMHFQLPIQAc[61], unknown mods may exist in spectrum 20240927_SW-KF_S2_total_Slot2-39_1_8060_diatracer.895188.895188.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nLDISSLVSQIFNPLYNRQGEc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_total_Slot2-39_1_8060_diatracer.895454.895454.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nSRYM[147]ELYTYPPAc[61], unknown mods may exist in spectrum 20240927_SW-KF_S2_total_Slot2-39_1_8060_diatracer.896009.896009.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nILSLSWHPSGTHIAc[61], unknown mods may exist in spectrum 20240927_SW-KF_S2_total_Slot2-39_1_8060_diatracer.896512.896512.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nMVREFLAEFMSTYVMM[147]EPTc[61], unknown mods may exist in spectrum 20240927_SW-KF_S2_total_Slot2-39_1_8060_diatracer.897321.897321.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nPQNQNAC[160]SSEMFTc[61], unknown mods may exist in spectrum 20240927_SW-KF_S2_total_Slot2-39_1_8060_diatracer.898161.898161.2 [INFO:] Please specify modification and rerun PTMProphet ... ​ [INFO:] written 161000/199305 spectrum_queries [ERROR:] Cannot initialize for sequence: nSPSDLLDASAVSATSRYIE[172]E[172]Qc[61], unknown mods may exist in spectrum 20240927_SW-KF_S2_total_Slot2-39_1_8060_diatracer.901004.901004.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nQID[158]ELSVGSDTIDLc[61], unknown mods may exist in spectrum 20240927_SW-KF_S2_total_Slot2-39_1_8060_diatracer.901641.901641.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nQLQSEQPQTAAARSc[61], unknown mods may exist in spectrum 20240927_SW-KF_S2_total_Slot2-39_1_8060_diatracer.901982.901982.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nAC[160]LAKGLAAAPSPNEc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_total_Slot2-39_1_8060_diatracer.902061.902061.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nMPGSHAGPITTFLPGc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_total_Slot2-39_1_8060_diatracer.902802.902802.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: n[43]NVSVLSYFDSAGATc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_total_Slot2-39_1_8060_diatracer.904468.904468.2 [INFO:] Please specify modification and rerun PTMProphet ... ​ [INFO:] written 162000/199305 spectrum_queries [ERROR:] Cannot initialize for sequence: nEEISAQGPSQIVSSHPTIRMTc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_total_Slot2-39_1_8060_diatracer.906713.906713.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nQLSIIDMHC[160]VSNLISSM[147]VILTWQPPWc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_total_Slot2-39_1_8060_diatracer.907254.907254.4 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nEQIVGPLESPVEDSLIWC[160]LSc[61], unknown mods may exist in spectrum 20240927_SW-KF_S2_total_Slot2-39_1_8060_diatracer.909823.909823.3 [INFO:] Please specify modification and rerun PTMProphet ... ​ [INFO:] written 163000/199305 spectrum_queries [ERROR:] Cannot initialize for sequence: nLADGQLQQAQIWGAc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_total_Slot2-39_1_8060_diatracer.911234.911234.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nQFSTASDHEQPGVSGc[61], unknown mods may exist in spectrum 20240927_SW-KF_S2_total_Slot2-39_1_8060_diatracer.915347.915347.2 [INFO:] Please specify modification and rerun PTMProphet ... ​ [INFO:] written 164000/199305 spectrum_queries [ERROR:] Cannot initialize for sequence: nGQGQWAPTC[160]TLPGPc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_total_Slot2-39_1_8060_diatracer.918094.918094.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nTNVINPAYATESGRc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_total_Slot2-39_1_8060_diatracer.919042.919042.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: n[43]MPGGAEYAGPPGPHNAAM[147]ALSQYc[61], unknown mods may exist in spectrum 20240927_SW-KF_S2_total_Slot2-39_1_8060_diatracer.919344.919344.3 [INFO:] Please specify modification and rerun PTMProphet ... ​ [INFO:] written 165000/199305 spectrum_queries [ERROR:] Cannot initialize for sequence: nSSAAAAAALDLSGRRGc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_total_Slot2-39_1_8060_diatracer.924178.924178.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nPAVPALLC[160]RHGQQLLRVLGSAc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_total_Slot2-39_1_8060_diatracer.926262.926262.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nLEAEFPPHHSQSTc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_total_Slot2-39_1_8060_diatracer.926482.926482.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nMVREFLAEFMSTYVMM[147]EPTc[61], unknown mods may exist in spectrum 20240927_SW-KF_S2_total_Slot2-39_1_8060_diatracer.927047.927047.3 [INFO:] Please specify modification and rerun PTMProphet ... ​ [INFO:] written 166000/199305 spectrum_queries [ERROR:] Cannot initialize for sequence: nQARDGTSPIHQMGQc[61], unknown mods may exist in spectrum 20240927_SW-KF_S2_total_Slot2-39_1_8060_diatracer.928602.928602.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nGDLKC[160]HITANPFKc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_total_Slot2-39_1_8060_diatracer.929169.929169.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nAC[160]LAKGLAAAPSPNEc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_total_Slot2-39_1_8060_diatracer.929809.929809.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nSLPQTERIYFQVc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_total_Slot2-39_1_8060_diatracer.930320.930320.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nSPSDLLDASAVSATSRYIE[172]E[172]Qc[61], unknown mods may exist in spectrum 20240927_SW-KF_S2_total_Slot2-39_1_8060_diatracer.930732.930732.3 [INFO:] Please specify modification and rerun PTMProphet ... ​ [INFO:] written 167000/199305 spectrum_queries [ERROR:] Cannot initialize for sequence: nIDEIQYVQGTINLc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_total_Slot2-39_1_8060_diatracer.933318.933318.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nHLSGQAEGLELLVLLLLLLTKc[61], unknown mods may exist in spectrum 20240927_SW-KF_S2_total_Slot2-39_1_8060_diatracer.933639.933639.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nAGGALAAAGIQGGTSGPGAc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_total_Slot2-39_1_8060_diatracer.934549.934549.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nIEQFSMVIGc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_total_Slot2-39_1_8060_diatracer.936119.936119.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nC[160]LVPQVVTDc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_total_Slot2-39_1_8060_diatracer.936699.936699.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nGASANWWNHc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_total_Slot2-39_1_8060_diatracer.936907.936907.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nFSAVALC[160]KAAc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_total_Slot2-39_1_8060_diatracer.937137.937137.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nELNGSDDALGVc[61], unknown mods may exist in spectrum 20240927_SW-KF_S2_total_Slot2-39_1_8060_diatracer.937345.937345.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nELNSGENHAEc[61], unknown mods may exist in spectrum 20240927_SW-KF_S2_total_Slot2-39_1_8060_diatracer.937544.937544.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nMTATTEVADDc[61], unknown mods may exist in spectrum 20240927_SW-KF_S2_total_Slot2-39_1_8060_diatracer.937819.937819.2 [INFO:] Please specify modification and rerun PTMProphet ... ​ [INFO:] written 168000/199305 spectrum_queries [ERROR:] Cannot initialize for sequence: nQNDLTSVTEEAESTPc[61], unknown mods may exist in spectrum 20240927_SW-KF_S2_total_Slot2-39_1_8060_diatracer.938769.938769.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nLLSFIAWC[160]VLWTDc[61], unknown mods may exist in spectrum 20240927_SW-KF_S2_total_Slot2-39_1_8060_diatracer.938877.938877.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nC[160]TIAPAASAFLVELGAc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_total_Slot2-39_1_8060_diatracer.939112.939112.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nVVVSASALIAGLHQRAGPLARQc[61], unknown mods may exist in spectrum 20240927_SW-KF_S2_total_Slot2-39_1_8060_diatracer.939515.939515.4 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nMFTLDAGNNSc[61], unknown mods may exist in spectrum 20240927_SW-KF_S2_total_Slot2-39_1_8060_diatracer.941132.941132.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nPPDSYSGLGRc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_total_Slot2-39_1_8060_diatracer.942311.942311.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nTVVGQITVDMc[61], unknown mods may exist in spectrum 20240927_SW-KF_S2_total_Slot2-39_1_8060_diatracer.943183.943183.2 [INFO:] Please specify modification and rerun PTMProphet ... ​ [INFO:] written 169000/199305 spectrum_queries [ERROR:] Cannot initialize for sequence: nAPAAEAVAEGASc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_total_Slot2-39_1_8060_diatracer.944527.944527.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nC[160]PGLGAGPARGAPGGALHc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_total_Slot2-39_1_8060_diatracer.944628.944628.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nDLHNTNIEPc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_total_Slot2-39_1_8060_diatracer.947330.947330.2 [INFO:] Please specify modification and rerun PTMProphet ... ​ [INFO:] written 170000/199305 spectrum_queries [ERROR:] Cannot initialize for sequence: nTPMDLSSSSPc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_total_Slot2-39_1_8060_diatracer.950750.950750.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nIVITGDADIDHDQVVC[160]VRRc[61], unknown mods may exist in spectrum 20240927_SW-KF_S2_total_Slot2-39_1_8060_diatracer.950948.950948.4 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nPTPDKC[160]AADVKAPLEVAQEHc[61], unknown mods may exist in spectrum 20240927_SW-KF_S2_total_Slot2-39_1_8060_diatracer.953259.953259.4 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nLEEVKSLGFc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_total_Slot2-39_1_8060_diatracer.953343.953343.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nLQEVHGLVQc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_total_Slot2-39_1_8060_diatracer.953392.953392.2 [INFO:] Please specify modification and rerun PTMProphet ... ​ [INFO:] written 171000/199305 spectrum_queries [ERROR:] Cannot initialize for sequence: nYQIYDLDSEAKQFc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_total_Slot2-39_1_8060_diatracer.954580.954580.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nLEEVKSLGFc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_total_Slot2-39_1_8060_diatracer.955761.955761.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nWPQPLLAMC[160]LEIRc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_total_Slot2-39_1_8060_diatracer.957094.957094.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nADGLAVIGVLMc[61], unknown mods may exist in spectrum 20240927_SW-KF_S2_total_Slot2-39_1_8060_diatracer.957605.957605.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nGPC[160]DAPAPEC[160]c[61], unknown mods may exist in spectrum 20240927_SW-KF_S2_total_Slot2-39_1_8060_diatracer.958326.958326.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nTLPGPSGQPSQEPIPC[160]c[61], unknown mods may exist in spectrum 20240927_SW-KF_S2_total_Slot2-39_1_8060_diatracer.959628.959628.3 [INFO:] Please specify modification and rerun PTMProphet ... ​ [INFO:] written 172000/199305 spectrum_queries [ERROR:] Cannot initialize for sequence: nNGPYTGPC[160]GLc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_total_Slot2-39_1_8060_diatracer.960889.960889.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nAPTGSNGSEAAAc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_total_Slot2-39_1_8060_diatracer.960940.960940.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nC[160]PGLGAGPARGAPGGALHc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_total_Slot2-39_1_8060_diatracer.961639.961639.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nPEGGGGGQAAAAAc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_total_Slot2-39_1_8060_diatracer.962134.962134.2 [INFO:] Please specify modification and rerun PTMProphet ... ​ [INFO:] written 173000/199305 spectrum_queries [ERROR:] Cannot initialize for sequence: nQGPPASPTASPEPPPPEc[61], unknown mods may exist in spectrum 20240927_SW-KF_S2_total_Slot2-39_1_8060_diatracer.966476.966476.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nEVTVSGGVSAANc[61], unknown mods may exist in spectrum 20240927_SW-KF_S2_total_Slot2-39_1_8060_diatracer.966677.966677.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nDSLIPPQSRc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_total_Slot2-39_1_8060_diatracer.967156.967156.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nVMNTFDYGANVEYPc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_total_Slot2-39_1_8060_diatracer.968842.968842.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nC[160]PGLGAGPARGAPGGALHc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_total_Slot2-39_1_8060_diatracer.968939.968939.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nTSPVTASDPAGPc[61], unknown mods may exist in spectrum 20240927_SW-KF_S2_total_Slot2-39_1_8060_diatracer.969265.969265.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nQQQYQQAQc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_total_Slot2-39_1_8060_diatracer.970166.970166.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nLEEVKSLGFc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_total_Slot2-39_1_8060_diatracer.970356.970356.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nLQEVHGLVQc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_total_Slot2-39_1_8060_diatracer.970406.970406.2 [INFO:] Please specify modification and rerun PTMProphet ... ​ [INFO:] written 174000/199305 spectrum_queries [ERROR:] Cannot initialize for sequence: nAEEAAKGNGLPLAKEATc[61], unknown mods may exist in spectrum 20240927_SW-KF_S2_total_Slot2-39_1_8060_diatracer.971729.971729.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nTVVGQITVDMc[61], unknown mods may exist in spectrum 20240927_SW-KF_S2_total_Slot2-39_1_8060_diatracer.972359.972359.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nC[160]AFQSATAC[160]AAPASTAGc[61], unknown mods may exist in spectrum 20240927_SW-KF_S2_total_Slot2-39_1_8060_diatracer.973397.973397.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nNFILDQETLPSQRc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_total_Slot2-39_1_8060_diatracer.974386.974386.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nIEDNLPAGEEc[61], unknown mods may exist in spectrum 20240927_SW-KF_S2_total_Slot2-39_1_8060_diatracer.975809.975809.2 [INFO:] Please specify modification and rerun PTMProphet ... ​ [INFO:] written 175000/199305 spectrum_queries [ERROR:] Cannot initialize for sequence: nGAEEPWMGPFPGQQGc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_total_Slot2-39_1_8060_diatracer.977780.977780.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nAEPQSLDGVDc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_total_Slot2-39_1_8060_diatracer.977974.977974.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: n[43]SPGASLWSDIPDGAAAAc[61], unknown mods may exist in spectrum 20240927_SW-KF_S2_total_Slot2-39_1_8060_diatracer.979907.979907.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nILDLYALSKc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_total_Slot2-39_1_8060_diatracer.980371.980371.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nASVLEAAVAATATSEMAc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_total_Slot2-39_1_8060_diatracer.980488.980488.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nRC[160]SLSVAQEc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_total_Slot2-39_1_8060_diatracer.980980.980980.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nGLPSSSPDASTAc[61], unknown mods may exist in spectrum 20240927_SW-KF_S2_total_Slot2-39_1_8060_diatracer.981095.981095.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nLDELEEATKc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_total_Slot2-39_1_8060_diatracer.981168.981168.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nSGLYPTGSSGSc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_total_Slot2-39_1_8060_diatracer.981578.981578.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nAAAGDLGGMVFc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_total_Slot2-39_1_8060_diatracer.981711.981711.2 [INFO:] Please specify modification and rerun PTMProphet ... ​ [INFO:] written 176000/199305 spectrum_queries [ERROR:] Cannot initialize for sequence: nILDTERMLAc[61], unknown mods may exist in spectrum 20240927_SW-KF_S2_total_Slot2-39_1_8060_diatracer.982190.982190.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nC[160]IIVM[147]PEKM[147]SSEKc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_total_Slot2-39_1_8060_diatracer.982570.982570.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nIPASQTSVPFDHLGKc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_total_Slot2-39_1_8060_diatracer.982832.982832.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nTLKSSSLFFc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_total_Slot2-39_1_8060_diatracer.982852.982852.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nKVAPGGQC[160]VPITDSQQPGRLc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_total_Slot2-39_1_8060_diatracer.984343.984343.4 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nELNSGENHAEc[61], unknown mods may exist in spectrum 20240927_SW-KF_S2_total_Slot2-39_1_8060_diatracer.986171.986171.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nAAAGDLGGMVFc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_total_Slot2-39_1_8060_diatracer.986578.986578.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nNLGGIFLKGPHDAEVc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_total_Slot2-39_1_8060_diatracer.987035.987035.3 [INFO:] Please specify modification and rerun PTMProphet ... ​ [INFO:] written 177000/199305 spectrum_queries [ERROR:] Cannot initialize for sequence: nPEGGGGGQAAAAAc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_total_Slot2-39_1_8060_diatracer.988850.988850.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nLEEVKSLGFc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_total_Slot2-39_1_8060_diatracer.989456.989456.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nELNGSDDALGVc[61], unknown mods may exist in spectrum 20240927_SW-KF_S2_total_Slot2-39_1_8060_diatracer.990847.990847.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nAFRRDSHLAQHQRc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_total_Slot2-39_1_8060_diatracer.991200.991200.3 [INFO:] Please specify modification and rerun PTMProphet ... ​ [INFO:] written 179000/199305 spectrum_queries [ERROR:] Cannot initialize for sequence: nWPLTETSIQGDAVKSGNTAc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_total_Slot2-39_1_8060_diatracer.1000358.1000358.2 [INFO:] Please specify modification and rerun PTMProphet ... ​ [INFO:] written 180000/199305 spectrum_queries [ERROR:] Cannot initialize for sequence: nLLATNGTPLPc[61], unknown mods may exist in spectrum 20240927_SW-KF_S2_total_Slot2-39_1_8060_diatracer.1007810.1007810.1 [INFO:] Please specify modification and rerun PTMProphet ... ​ [INFO:] written 181000/199305 spectrum_queries [ERROR:] Cannot initialize for sequence: nADILEEGLLC[160]LVVC[160]C[160]LLRTAc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_total_Slot2-39_1_8060_diatracer.1011801.1011801.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nENDLVSGYHPRAVGLGDVEDAASc[61], unknown mods may exist in spectrum 20240927_SW-KF_S2_total_Slot2-39_1_8060_diatracer.1012025.1012025.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nAQLSPEASTEELIHc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_total_Slot2-39_1_8060_diatracer.1012147.1012147.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nQIEDTVLYGYYTNc[61], unknown mods may exist in spectrum 20240927_SW-KF_S2_total_Slot2-39_1_8060_diatracer.1015944.1015944.2 [INFO:] Please specify modification and rerun PTMProphet ... ​ [INFO:] written 182000/199305 spectrum_queries [ERROR:] Cannot initialize for sequence: nAYEIVDSHLEVPSLPSHKWAEc[61], unknown mods may exist in spectrum 20240927_SW-KF_S2_total_Slot2-39_1_8060_diatracer.1016576.1016576.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nQIEDTVLYGYYTNc[61], unknown mods may exist in spectrum 20240927_SW-KF_S2_total_Slot2-39_1_8060_diatracer.1017792.1017792.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nATAGEPSPHGQVSSPPc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_total_Slot2-39_1_8060_diatracer.1020936.1020936.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nLGAAVAAAGWGRRATAAc[61], unknown mods may exist in spectrum 20240927_SW-KF_S2_total_Slot2-39_1_8060_diatracer.1021390.1021390.2 [INFO:] Please specify modification and rerun PTMProphet ... ​ [INFO:] written 183000/199305 spectrum_queries [ERROR:] Cannot initialize for sequence: nAITIAGIPQSIIE[172]C[160]c[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_total_Slot2-39_1_8060_diatracer.1023439.1023439.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nPGQPSGGAPKAAAAETGEc[61], unknown mods may exist in spectrum 20240927_SW-KF_S2_total_Slot2-39_1_8060_diatracer.1024164.1024164.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nHRAAFSVLSLGAHSVc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_total_Slot2-39_1_8060_diatracer.1024255.1024255.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nSLC[160]AVFGGGTQLTVLc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_total_Slot2-39_1_8060_diatracer.1024994.1024994.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nPAPPPPPPPQPQASATGAADPGPEPc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_total_Slot2-39_1_8060_diatracer.1025243.1025243.3 [INFO:] Please specify modification and rerun PTMProphet ... ​ [INFO:] written 184000/199305 spectrum_queries [ERROR:] Cannot initialize for sequence: nEPFAVTDEIFSLDAc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_total_Slot2-39_1_8060_diatracer.1031516.1031516.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nYQSLAMAANHGPPPGc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_total_Slot2-39_1_8060_diatracer.1031778.1031778.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nAQSISTTSNNSMGEKc[61], unknown mods may exist in spectrum 20240927_SW-KF_S2_total_Slot2-39_1_8060_diatracer.1031861.1031861.2 [INFO:] Please specify modification and rerun PTMProphet ... ​ [INFO:] written 185000/199305 spectrum_queries [ERROR:] Cannot initialize for sequence: nFC[160]LLSSSLAHQGDPGc[61], unknown mods may exist in spectrum 20240927_SW-KF_S2_total_Slot2-39_1_8060_diatracer.1034977.1034977.2 [INFO:] Please specify modification and rerun PTMProphet ... ​ [INFO:] written 186000/199305 spectrum_queries [ERROR:] Cannot initialize for sequence: nDELHIVEAEAM[147]NYc[61], unknown mods may exist in spectrum 20240927_SW-KF_S2_total_Slot2-39_1_8060_diatracer.1042945.1042945.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nMAVISLSAHQFPTLc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_total_Slot2-39_1_8060_diatracer.1043258.1043258.2 [INFO:] Please specify modification and rerun PTMProphet ... ​ [INFO:] written 187000/199305 spectrum_queries [ERROR:] Cannot initialize for sequence: nSGAIVPQASPLSRSPGAc[61], unknown mods may exist in spectrum 20240927_SW-KF_S2_total_Slot2-39_1_8060_diatracer.1046440.1046440.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nFTVYIPDNYPDGDc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_total_Slot2-39_1_8060_diatracer.1046943.1046943.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nLAATNALLNSLE[172]FTc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_total_Slot2-39_1_8060_diatracer.1046994.1046994.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nYADLPGRPFEPLLATDGGEVTSAc[61], unknown mods may exist in spectrum 20240927_SW-KF_S2_total_Slot2-39_1_8060_diatracer.1047177.1047177.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nATDLPFFVTMATVSGc[61], unknown mods may exist in spectrum 20240927_SW-KF_S2_total_Slot2-39_1_8060_diatracer.1048528.1048528.2 [INFO:] Please specify modification and rerun PTMProphet ... ​ [INFO:] written 188000/199305 spectrum_queries [ERROR:] Cannot initialize for sequence: nNTSALPC[160]KMWGMPGc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_total_Slot2-39_1_8060_diatracer.1051805.1051805.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nVC[160]APVLAKPGVISVMGTc[61], unknown mods may exist in spectrum 20240927_SW-KF_S2_total_Slot2-39_1_8060_diatracer.1053092.1053092.3 [INFO:] Please specify modification and rerun PTMProphet ... ​ [INFO:] written 189000/199305 spectrum_queries [ERROR:] Cannot initialize for sequence: nLQDAAGHEQC[160]c[61], unknown mods may exist in spectrum 20240927_SW-KF_S2_total_Slot2-39_1_8060_diatracer.1055865.1055865.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nGGEASGTSDGGPPc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_total_Slot2-39_1_8060_diatracer.1056136.1056136.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nVEEHSDTPAIc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_total_Slot2-39_1_8060_diatracer.1056863.1056863.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nLDE[216]NVHTDNc[61], unknown mods may exist in spectrum 20240927_SW-KF_S2_total_Slot2-39_1_8060_diatracer.1059117.1059117.2 [INFO:] Please specify modification and rerun PTMProphet ... ​ [INFO:] written 190000/199305 spectrum_queries [ERROR:] Cannot initialize for sequence: nQLAELETEDGMQESPc[61], unknown mods may exist in spectrum 20240927_SW-KF_S2_total_Slot2-39_1_8060_diatracer.1062698.1062698.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nSHPSTLDQMEc[61], unknown mods may exist in spectrum 20240927_SW-KF_S2_total_Slot2-39_1_8060_diatracer.1064266.1064266.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nC[160]QFGAEIITAESYSLc[61], unknown mods may exist in spectrum 20240927_SW-KF_S2_total_Slot2-39_1_8060_diatracer.1065525.1065525.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nQTPPLASVEMc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_total_Slot2-39_1_8060_diatracer.1065813.1065813.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nM[147]FDIEDLDLYEPAEc[61], unknown mods may exist in spectrum 20240927_SW-KF_S2_total_Slot2-39_1_8060_diatracer.1066205.1066205.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nYLC[160]SC[160]FC[160]NLLQTEc[61], unknown mods may exist in spectrum 20240927_SW-KF_S2_total_Slot2-39_1_8060_diatracer.1066425.1066425.3 [INFO:] Please specify modification and rerun PTMProphet ... ​ [INFO:] written 191000/199305 spectrum_queries [ERROR:] Cannot initialize for sequence: nARGIPHRFAGHESYQc[61], unknown mods may exist in spectrum 20240927_SW-KF_S2_total_Slot2-39_1_8060_diatracer.1069271.1069271.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nGEIGPMGIPGPQGPPGPHc[61], unknown mods may exist in spectrum 20240927_SW-KF_S2_total_Slot2-39_1_8060_diatracer.1070937.1070937.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nVLIKSLQWEc[61], unknown mods may exist in spectrum 20240927_SW-KF_S2_total_Slot2-39_1_8060_diatracer.1071110.1071110.2 [INFO:] Please specify modification and rerun PTMProphet ... ​ [INFO:] written 192000/199305 spectrum_queries [ERROR:] Cannot initialize for sequence: nLDE[216]NVHTDNc[61], unknown mods may exist in spectrum 20240927_SW-KF_S2_total_Slot2-39_1_8060_diatracer.1074617.1074617.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nLLDQMETPLc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_total_Slot2-39_1_8060_diatracer.1075560.1075560.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nQAVAQLEDQAc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_total_Slot2-39_1_8060_diatracer.1076159.1076159.2 [INFO:] Please specify modification and rerun PTMProphet ... ​ [INFO:] written 193000/199305 spectrum_queries [ERROR:] Cannot initialize for sequence: nALGVGSQAATSADLIGAGQc[61], unknown mods may exist in spectrum 20240927_SW-KF_S2_total_Slot2-39_1_8060_diatracer.1078386.1078386.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nDLAQELDRDc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_total_Slot2-39_1_8060_diatracer.1078688.1078688.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nDPDRNLIEVSNYISSc[61], unknown mods may exist in spectrum 20240927_SW-KF_S2_total_Slot2-39_1_8060_diatracer.1079641.1079641.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nRILEDLSIDAc[61], unknown mods may exist in spectrum 20240927_SW-KF_S2_total_Slot2-39_1_8060_diatracer.1079821.1079821.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nAAVGC[160]SLSNGGEc[61], unknown mods may exist in spectrum 20240927_SW-KF_S2_total_Slot2-39_1_8060_diatracer.1081351.1081351.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nMQEQEIGFISKYNEc[61], unknown mods may exist in spectrum 20240927_SW-KF_S2_total_Slot2-39_1_8060_diatracer.1081805.1081805.3 [INFO:] Please specify modification and rerun PTMProphet ... ​ [INFO:] written 194000/199305 spectrum_queries [ERROR:] Cannot initialize for sequence: nASLALPGPVSSLc[61], unknown mods may exist in spectrum 20240927_SW-KF_S2_total_Slot2-39_1_8060_diatracer.1083772.1083772.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nASVYQTIFSTc[61], unknown mods may exist in spectrum 20240927_SW-KF_S2_total_Slot2-39_1_8060_diatracer.1083923.1083923.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nTTSSRNSPTMc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_total_Slot2-39_1_8060_diatracer.1084221.1084221.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nYLDMDSPLGSc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_total_Slot2-39_1_8060_diatracer.1084983.1084983.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nIFYPEIEEVQALDDc[61], unknown mods may exist in spectrum 20240927_SW-KF_S2_total_Slot2-39_1_8060_diatracer.1085784.1085784.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nISQPQEPELMNANPSPPPSPSc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_total_Slot2-39_1_8060_diatracer.1086257.1086257.4 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nEDLSSNC[160]PGPTSADHDc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_total_Slot2-39_1_8060_diatracer.1087963.1087963.3 [INFO:] Please specify modification and rerun PTMProphet ... ​ [INFO:] written 195000/199305 spectrum_queries [ERROR:] Cannot initialize for sequence: nAGVGSGEGAGSVGPc[61], unknown mods may exist in spectrum 20240927_SW-KF_S2_total_Slot2-39_1_8060_diatracer.1090883.1090883.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nSPQC[160]SNPGLC[160]VQPHHc[61], unknown mods may exist in spectrum 20240927_SW-KF_S2_total_Slot2-39_1_8060_diatracer.1092439.1092439.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nSMAASGNLGHTPFVDELc[61], unknown mods may exist in spectrum 20240927_SW-KF_S2_total_Slot2-39_1_8060_diatracer.1093244.1093244.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nSLALM[147]LSSTSFVTSVAc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_total_Slot2-39_1_8060_diatracer.1093450.1093450.3 [INFO:] Please specify modification and rerun PTMProphet ... ​ [INFO:] written 196000/199305 spectrum_queries [ERROR:] Cannot initialize for sequence: nLDE[216]NVHTDNc[61], unknown mods may exist in spectrum 20240927_SW-KF_S2_total_Slot2-39_1_8060_diatracer.1095289.1095289.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nPSFLTIASFSc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_total_Slot2-39_1_8060_diatracer.1096599.1096599.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nMVNGGTVLC[160]Kc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_total_Slot2-39_1_8060_diatracer.1099470.1099470.2 [INFO:] Please specify modification and rerun PTMProphet ... ​ [INFO:] written 197000/199305 spectrum_queries [ERROR:] Cannot initialize for sequence: nPSFLTIASFSc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_total_Slot2-39_1_8060_diatracer.1101771.1101771.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nGWIGQHIQEc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_total_Slot2-39_1_8060_diatracer.1101788.1101788.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nQILALTGWGYc[61], unknown mods may exist in spectrum 20240927_SW-KF_S2_total_Slot2-39_1_8060_diatracer.1102038.1102038.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nGAGAISNFLPNNGRQFc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_total_Slot2-39_1_8060_diatracer.1102388.1102388.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nDAVLLLFANKc[61], unknown mods may exist in spectrum 20240927_SW-KF_S2_total_Slot2-39_1_8060_diatracer.1103831.1103831.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nTPSTMPWVALc[61], unknown mods may exist in spectrum 20240927_SW-KF_S2_total_Slot2-39_1_8060_diatracer.1103974.1103974.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nEFDILLGQHNDEMQc[61], unknown mods may exist in spectrum 20240927_SW-KF_S2_total_Slot2-39_1_8060_diatracer.1104273.1104273.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nGNVTEEFVWc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_total_Slot2-39_1_8060_diatracer.1104887.1104887.2 [INFO:] Please specify modification and rerun PTMProphet ... ​ [INFO:] written 198000/199305 spectrum_queries [ERROR:] Cannot initialize for sequence: nIHDVSAIIEQc[61], unknown mods may exist in spectrum 20240927_SW-KF_S2_total_Slot2-39_1_8060_diatracer.1104971.1104971.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nNEISGTLEDDFLKAKc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_total_Slot2-39_1_8060_diatracer.1105323.1105323.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nFTAKLSQFC[160]c[61], unknown mods may exist in spectrum 20240927_SW-KF_S2_total_Slot2-39_1_8060_diatracer.1106583.1106583.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nGVGPGAGPGAGDGTc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_total_Slot2-39_1_8060_diatracer.1106705.1106705.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nVNSPVAAFC[160]Lc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_total_Slot2-39_1_8060_diatracer.1107270.1107270.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nPGGGGVGPGPGAAGPMLGGVVc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_total_Slot2-39_1_8060_diatracer.1110261.1110261.3 [INFO:] Please specify modification and rerun PTMProphet ... ​ [INFO:] written 199000/199305 spectrum_queries [INFO:] done ... [INFO:] Writing file interact-20240927_SW-KF_S2_total_Slot2-39_1_8060_diatracer.mod.pep.xml ... [INFO:] done ... Process 'PTMProphet' finished, exit code: 0 [INFO:] Using statically set 15 PPM tolerance ... [INFO:] Writing file interact-20240927_SW-KF_S2_sup_Slot2-40_1_8061_diatracer.pep.xml.tmp.a04368 ... [INFO:] Creating 1 threads [INFO:] Wait for threads to finish ... [INFO:] Reading file interact-20240927_SW-KF_S2_sup_Slot2-40_1_8061_diatracer.pep.xml ... [ERROR:] Cannot initialize for sequence: nWEEKSREFIGSFLEMFc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_sup_Slot2-40_1_8061_diatracer.01360.01360.2 [INFO:] Please specify modification and rerun PTMProphet ... ​ [INFO:] processed 1000/189300 spectrum_queries [ERROR:] Cannot initialize for sequence: nM[147]QAQDAVSLC[160]FPGWSAM[147]Tc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_sup_Slot2-40_1_8061_diatracer.06533.06533.2 [INFO:] Please specify modification and rerun PTMProphet ... ​ [INFO:] processed 2000/189300 spectrum_queries [ERROR:] Cannot initialize for sequence: nSC[160]PPWMAVPDSGRPVDPDSc[61], unknown mods may exist in spectrum 20240927_SW-KF_S2_sup_Slot2-40_1_8061_diatracer.12849.12849.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nNGEDDSMDLVENMTEPVNc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_sup_Slot2-40_1_8061_diatracer.13276.13276.2 [INFO:] Please specify modification and rerun PTMProphet ... ​ [INFO:] processed 3000/189300 spectrum_queries [ERROR:] Cannot initialize for sequence: nM[147]GLALVM[147]HGFPPGSDDLFFIQKc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_sup_Slot2-40_1_8061_diatracer.17172.17172.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nQPPPAEAGAVNRTEAAc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_sup_Slot2-40_1_8061_diatracer.19485.19485.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nVSTEGPKSSVPPGPVEc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_sup_Slot2-40_1_8061_diatracer.20983.20983.2 [INFO:] Please specify modification and rerun PTMProphet ... ​ [INFO:] processed 4000/189300 spectrum_queries [ERROR:] Cannot initialize for sequence: nQIEAGSAPALTE[172]PGQE[172]GSEPRVFc[61], unknown mods may exist in spectrum 20240927_SW-KF_S2_sup_Slot2-40_1_8061_diatracer.26267.26267.3 [INFO:] Please specify modification and rerun PTMProphet ... ​ [INFO:] processed 5000/189300 spectrum_queries [ERROR:] Cannot initialize for sequence: nSPGGNVGQGQGLGDSPC[160]c[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_sup_Slot2-40_1_8061_diatracer.28333.28333.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nGGESIWLAAANESGGPEc[61], unknown mods may exist in spectrum 20240927_SW-KF_S2_sup_Slot2-40_1_8061_diatracer.30451.30451.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nEAPEYLDLDEIDFc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_sup_Slot2-40_1_8061_diatracer.32655.32655.2 [INFO:] Please specify modification and rerun PTMProphet ... ​ [INFO:] processed 6000/189300 spectrum_queries [ERROR:] Cannot initialize for sequence: nGASDLGLM[147]VIHLSQFASINSSINGc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_sup_Slot2-40_1_8061_diatracer.33987.33987.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nM[147]IRPASELSAQTAAGAc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_sup_Slot2-40_1_8061_diatracer.35188.35188.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nEAPEYLDLDEIDFc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_sup_Slot2-40_1_8061_diatracer.36019.36019.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nFVDELTQTFNSLTSc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_sup_Slot2-40_1_8061_diatracer.37336.37336.2 [INFO:] Please specify modification and rerun PTMProphet ... ​ [INFO:] processed 7000/189300 spectrum_queries [ERROR:] Cannot initialize for sequence: nFQDSNLAPAC[160]FPGTGRGLM[147]SQTSc[61], unknown mods may exist in spectrum 20240927_SW-KF_S2_sup_Slot2-40_1_8061_diatracer.43285.43285.3 [INFO:] Please specify modification and rerun PTMProphet ... ​ [INFO:] processed 8000/189300 spectrum_queries [ERROR:] Cannot initialize for sequence: nAVTEGAQAVEEPSIC[160]c[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_sup_Slot2-40_1_8061_diatracer.44189.44189.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nLLE[172]AVGSSSGTPNAPPPc[61], unknown mods may exist in spectrum 20240927_SW-KF_S2_sup_Slot2-40_1_8061_diatracer.45356.45356.2 [INFO:] Please specify modification and rerun PTMProphet ... ​ [INFO:] processed 9000/189300 spectrum_queries [ERROR:] Cannot initialize for sequence: nWRISLWNPLKSGDVPc[61], unknown mods may exist in spectrum 20240927_SW-KF_S2_sup_Slot2-40_1_8061_diatracer.53172.53172.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nSNFELLEKEVGLDLFc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_sup_Slot2-40_1_8061_diatracer.54321.54321.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nFHEILC[160]SFPLIPQEAc[61], unknown mods may exist in spectrum 20240927_SW-KF_S2_sup_Slot2-40_1_8061_diatracer.54374.54374.3 [INFO:] Please specify modification and rerun PTMProphet ... ​ [INFO:] processed 10000/189300 spectrum_queries [ERROR:] Cannot initialize for sequence: nAGAAGAEAPTQESc[61], unknown mods may exist in spectrum 20240927_SW-KF_S2_sup_Slot2-40_1_8061_diatracer.55521.55521.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nPREQNGAIYLPTPDRc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_sup_Slot2-40_1_8061_diatracer.56167.56167.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nDFLFPSPTGKc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_sup_Slot2-40_1_8061_diatracer.57989.57989.2 [INFO:] Please specify modification and rerun PTMProphet ... ​ [INFO:] processed 11000/189300 spectrum_queries [ERROR:] Cannot initialize for sequence: nRHETIAKPPGc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_sup_Slot2-40_1_8061_diatracer.60500.60500.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nTLAGDPSSPGPVSc[61], unknown mods may exist in spectrum 20240927_SW-KF_S2_sup_Slot2-40_1_8061_diatracer.61800.61800.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nSGPSTNTQSGLFNTPPPTc[61], unknown mods may exist in spectrum 20240927_SW-KF_S2_sup_Slot2-40_1_8061_diatracer.61906.61906.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nADHPPAEVTSHc[61], unknown mods may exist in spectrum 20240927_SW-KF_S2_sup_Slot2-40_1_8061_diatracer.63205.63205.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nDLSNLHLPGSNHSSASASc[61], unknown mods may exist in spectrum 20240927_SW-KF_S2_sup_Slot2-40_1_8061_diatracer.64571.64571.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nYPKEGAHIGTHQTLHSc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_sup_Slot2-40_1_8061_diatracer.65154.65154.3 [INFO:] Please specify modification and rerun PTMProphet ... ​ [INFO:] processed 12000/189300 spectrum_queries [ERROR:] Cannot initialize for sequence: nGPSGNREGPQYc[61], unknown mods may exist in spectrum 20240927_SW-KF_S2_sup_Slot2-40_1_8061_diatracer.65684.65684.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nGSDGLNPWSEKPTREAc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_sup_Slot2-40_1_8061_diatracer.66563.66563.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nKVGVAVETVIGDc[61], unknown mods may exist in spectrum 20240927_SW-KF_S2_sup_Slot2-40_1_8061_diatracer.67487.67487.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nC[160]FWPC[160]WALTSQVSNGc[61], unknown mods may exist in spectrum 20240927_SW-KF_S2_sup_Slot2-40_1_8061_diatracer.69988.69988.3 [INFO:] Please specify modification and rerun PTMProphet ... ​ [INFO:] processed 13000/189300 spectrum_queries [ERROR:] Cannot initialize for sequence: nGSDGLNPWSEKPTREAc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_sup_Slot2-40_1_8061_diatracer.71643.71643.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nAGNRNPTSMPSALWRPc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_sup_Slot2-40_1_8061_diatracer.72182.72182.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nVADEVVLPRQc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_sup_Slot2-40_1_8061_diatracer.73990.73990.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nINGTVILMYLc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_sup_Slot2-40_1_8061_diatracer.74121.74121.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nLAGGSADTVRSPc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_sup_Slot2-40_1_8061_diatracer.74251.74251.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nIEEEALSQPHc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_sup_Slot2-40_1_8061_diatracer.75146.75146.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nGGGGASSTC[160]GSGGAAc[61], unknown mods may exist in spectrum 20240927_SW-KF_S2_sup_Slot2-40_1_8061_diatracer.75402.75402.2 [INFO:] Please specify modification and rerun PTMProphet ... ​ [INFO:] processed 14000/189300 spectrum_queries [ERROR:] Cannot initialize for sequence: nQAEVLKADMTDSKLGPAc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_sup_Slot2-40_1_8061_diatracer.77751.77751.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nVADEVVLPRQc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_sup_Slot2-40_1_8061_diatracer.79063.79063.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nHSLATQNQRSc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_sup_Slot2-40_1_8061_diatracer.79525.79525.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nDKPIAVGSM[147]SMLSTSNYc[61], unknown mods may exist in spectrum 20240927_SW-KF_S2_sup_Slot2-40_1_8061_diatracer.80329.80329.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nLQASAPNLTPIc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_sup_Slot2-40_1_8061_diatracer.81573.81573.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nVADEVVLPRQc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_sup_Slot2-40_1_8061_diatracer.81591.81591.2 [INFO:] Please specify modification and rerun PTMProphet ... ​ [INFO:] processed 15000/189300 spectrum_queries [ERROR:] Cannot initialize for sequence: nLPDLEKTGHKc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_sup_Slot2-40_1_8061_diatracer.82214.82214.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nIEEEALSQPHc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_sup_Slot2-40_1_8061_diatracer.85320.85320.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nEDPLGEAQPQIc[61], unknown mods may exist in spectrum 20240927_SW-KF_S2_sup_Slot2-40_1_8061_diatracer.85470.85470.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nIQDGSFLELTc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_sup_Slot2-40_1_8061_diatracer.86640.86640.2 [INFO:] Please specify modification and rerun PTMProphet ... ​ [INFO:] processed 16000/189300 spectrum_queries [ERROR:] Cannot initialize for sequence: nFSSPSSRSPETc[61], unknown mods may exist in spectrum 20240927_SW-KF_S2_sup_Slot2-40_1_8061_diatracer.87283.87283.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nKWLSLTEEPPGGAAELAc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_sup_Slot2-40_1_8061_diatracer.87689.87689.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nFLYTVPNGNNPTGNSLTc[61], unknown mods may exist in spectrum 20240927_SW-KF_S2_sup_Slot2-40_1_8061_diatracer.87835.87835.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nVEASLGYSPGKNFQTSSc[61], unknown mods may exist in spectrum 20240927_SW-KF_S2_sup_Slot2-40_1_8061_diatracer.89186.89186.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nVESGGGSGPYPAAc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_sup_Slot2-40_1_8061_diatracer.90031.90031.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nGGGLQC[160]SGGGFGGGYSASSSQLRLSc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_sup_Slot2-40_1_8061_diatracer.91984.91984.4 [INFO:] Please specify modification and rerun PTMProphet ... ​ [INFO:] processed 17000/189300 spectrum_queries [ERROR:] Cannot initialize for sequence: nFHHPAQGLC[160]Pc[61], unknown mods may exist in spectrum 20240927_SW-KF_S2_sup_Slot2-40_1_8061_diatracer.93657.93657.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nDGTENAFLLHVAQGSGLc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_sup_Slot2-40_1_8061_diatracer.94042.94042.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nELAEDDSILKc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_sup_Slot2-40_1_8061_diatracer.94731.94731.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nAGC[160]PVANGVAAAAAc[61], unknown mods may exist in spectrum 20240927_SW-KF_S2_sup_Slot2-40_1_8061_diatracer.95643.95643.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nPQITAQRC[160]INEAQKVc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_sup_Slot2-40_1_8061_diatracer.97630.97630.3 [INFO:] Please specify modification and rerun PTMProphet ... ​ [INFO:] processed 18000/189300 spectrum_queries [ERROR:] Cannot initialize for sequence: nNFIQLC[160]LEELC[160]LVSc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_sup_Slot2-40_1_8061_diatracer.99625.99625.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nPLDGEYFTLQc[61], unknown mods may exist in spectrum 20240927_SW-KF_S2_sup_Slot2-40_1_8061_diatracer.99833.99833.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nSDNGNATVVMSSc[61], unknown mods may exist in spectrum 20240927_SW-KF_S2_sup_Slot2-40_1_8061_diatracer.100095.100095.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nM[147]NSSPAGTPSPQc[61], unknown mods may exist in spectrum 20240927_SW-KF_S2_sup_Slot2-40_1_8061_diatracer.100283.100283.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nMTDPASWEGGFSNTYNc[61], unknown mods may exist in spectrum 20240927_SW-KF_S2_sup_Slot2-40_1_8061_diatracer.101677.101677.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nVADEVVLPRQc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_sup_Slot2-40_1_8061_diatracer.101928.101928.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nTQAASFPPPPVc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_sup_Slot2-40_1_8061_diatracer.103588.103588.2 [INFO:] Please specify modification and rerun PTMProphet ... ​ [INFO:] processed 19000/189300 spectrum_queries [ERROR:] Cannot initialize for sequence: nLQASAPNLTPIc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_sup_Slot2-40_1_8061_diatracer.109495.109495.2 [INFO:] Please specify modification and rerun PTMProphet ... ​ [INFO:] processed 20000/189300 spectrum_queries [ERROR:] Cannot initialize for sequence: nDQPGVSVc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_sup_Slot2-40_1_8061_diatracer.111936.111936.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nELENAKNM[147]Lc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_sup_Slot2-40_1_8061_diatracer.112965.112965.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nELALISFLNLc[61], unknown mods may exist in spectrum 20240927_SW-KF_S2_sup_Slot2-40_1_8061_diatracer.112986.112986.3 [INFO:] Please specify modification and rerun PTMProphet ... ​ [INFO:] processed 21000/189300 spectrum_queries [ERROR:] Cannot initialize for sequence: nEGGAIFEVLGGSSSSGLLGHWc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_sup_Slot2-40_1_8061_diatracer.116118.116118.2 [INFO:] Please specify modification and rerun PTMProphet ... ​ [INFO:] processed 22000/189300 spectrum_queries [ERROR:] Cannot initialize for sequence: nPQSAAPDRVVGPGSAPGATGAGAAc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_sup_Slot2-40_1_8061_diatracer.124583.124583.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nVQPSPGSVGTHQLASGGHHIEc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_sup_Slot2-40_1_8061_diatracer.125539.125539.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nTEIVELEGAPSPEFPPWDKc[61], unknown mods may exist in spectrum 20240927_SW-KF_S2_sup_Slot2-40_1_8061_diatracer.126610.126610.2 [INFO:] Please specify modification and rerun PTMProphet ... ​ [INFO:] processed 23000/189300 spectrum_queries [ERROR:] Cannot initialize for sequence: nGGSPSLFDTDDEDGAGFc[61], unknown mods may exist in spectrum 20240927_SW-KF_S2_sup_Slot2-40_1_8061_diatracer.127794.127794.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nPPSQVPHPQAPAC[160]PVAc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_sup_Slot2-40_1_8061_diatracer.128229.128229.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nTEPAPAAAAGLGPDGAGGGAc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_sup_Slot2-40_1_8061_diatracer.131562.131562.2 [INFO:] Please specify modification and rerun PTMProphet ... ​ [INFO:] processed 24000/189300 spectrum_queries [ERROR:] Cannot initialize for sequence: nAVLIDEVC[160]TMND[158]GPHSALYTMMc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_sup_Slot2-40_1_8061_diatracer.134414.134414.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nSFSAISESSADNTLFSc[61], unknown mods may exist in spectrum 20240927_SW-KF_S2_sup_Slot2-40_1_8061_diatracer.135058.135058.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nASDLLAWEQIFEVAVDEFTVSEc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_sup_Slot2-40_1_8061_diatracer.137326.137326.3 [INFO:] Please specify modification and rerun PTMProphet ... ​ [INFO:] processed 25000/189300 spectrum_queries [ERROR:] Cannot initialize for sequence: nTVENVTVFGTASASKHc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_sup_Slot2-40_1_8061_diatracer.139189.139189.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nEEATLDSPVYSDDEEc[61], unknown mods may exist in spectrum 20240927_SW-KF_S2_sup_Slot2-40_1_8061_diatracer.139323.139323.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nNELISVKMAEAGSELEGVSLVTGGSc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_sup_Slot2-40_1_8061_diatracer.141662.141662.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nLQYPSNQAGPGSEEAVc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_sup_Slot2-40_1_8061_diatracer.143880.143880.2 [INFO:] Please specify modification and rerun PTMProphet ... ​ [INFO:] processed 26000/189300 spectrum_queries [ERROR:] Cannot initialize for sequence: nALLANQDSGEVQQGGPAc[61], unknown mods may exist in spectrum 20240927_SW-KF_S2_sup_Slot2-40_1_8061_diatracer.145791.145791.2 [INFO:] Please specify modification and rerun PTMProphet ... ​ [INFO:] processed 27000/189300 spectrum_queries [ERROR:] Cannot initialize for sequence: n[43]SVGVSTSAPLSPTSGTSVGM[147]STFSIMc[61], unknown mods may exist in spectrum 20240927_SW-KF_S2_sup_Slot2-40_1_8061_diatracer.151722.151722.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nIFTAVLNRC[160]M[147]LSALc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_sup_Slot2-40_1_8061_diatracer.152776.152776.2 [INFO:] Please specify modification and rerun PTMProphet ... ​ [INFO:] processed 28000/189300 spectrum_queries [ERROR:] Cannot initialize for sequence: nAEEAQKTESVDNEGEc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_sup_Slot2-40_1_8061_diatracer.156299.156299.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nEAAPSPHQPSAQPLPPc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_sup_Slot2-40_1_8061_diatracer.159190.159190.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nDVLWDLLKSTQIDIPVHQHDEc[61], unknown mods may exist in spectrum 20240927_SW-KF_S2_sup_Slot2-40_1_8061_diatracer.160274.160274.3 [INFO:] Please specify modification and rerun PTMProphet ... ​ [INFO:] processed 29000/189300 spectrum_queries [ERROR:] Cannot initialize for sequence: nGGSPSLFDTDDEDGAGFc[61], unknown mods may exist in spectrum 20240927_SW-KF_S2_sup_Slot2-40_1_8061_diatracer.162807.162807.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nTLAGTSTSGHFLHGPLSc[61], unknown mods may exist in spectrum 20240927_SW-KF_S2_sup_Slot2-40_1_8061_diatracer.162852.162852.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nNVSTSSTAAALM[147]GGTALC[160]Tc[61], unknown mods may exist in spectrum 20240927_SW-KF_S2_sup_Slot2-40_1_8061_diatracer.165828.165828.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nLLATLE[172]E[172]VDNc[61], unknown mods may exist in spectrum 20240927_SW-KF_S2_sup_Slot2-40_1_8061_diatracer.165882.165882.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nYQTWIKSNLVPPHTNc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_sup_Slot2-40_1_8061_diatracer.166234.166234.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nQLNHEYMLKc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_sup_Slot2-40_1_8061_diatracer.166517.166517.2 [INFO:] Please specify modification and rerun PTMProphet ... ​ [INFO:] processed 30000/189300 spectrum_queries [ERROR:] Cannot initialize for sequence: nILDDSFIEGMEMEGHVc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_sup_Slot2-40_1_8061_diatracer.169848.169848.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nDWIAAC[160]QLHGGLELEEc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_sup_Slot2-40_1_8061_diatracer.170119.170119.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nLLATLE[172]E[172]VDNc[61], unknown mods may exist in spectrum 20240927_SW-KF_S2_sup_Slot2-40_1_8061_diatracer.170762.170762.2 [INFO:] Please specify modification and rerun PTMProphet ... ​ [INFO:] processed 31000/189300 spectrum_queries [ERROR:] Cannot initialize for sequence: nPGLGLPPGAPPLVc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_sup_Slot2-40_1_8061_diatracer.171973.171973.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nVEEGSSAGKQNPQAEVHAc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_sup_Slot2-40_1_8061_diatracer.172614.172614.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nLLATLE[172]E[172]VDNc[61], unknown mods may exist in spectrum 20240927_SW-KF_S2_sup_Slot2-40_1_8061_diatracer.175648.175648.2 [INFO:] Please specify modification and rerun PTMProphet ... ​ [INFO:] processed 32000/189300 spectrum_queries [ERROR:] Cannot initialize for sequence: nTQPFHKYMSTc[61], unknown mods may exist in spectrum 20240927_SW-KF_S2_sup_Slot2-40_1_8061_diatracer.177515.177515.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nDGDAIPLPESSGc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_sup_Slot2-40_1_8061_diatracer.178131.178131.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nSASASASASSPAAAGAAAEAGC[160]c[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_sup_Slot2-40_1_8061_diatracer.179601.179601.3 [INFO:] Please specify modification and rerun PTMProphet ... ​ [INFO:] processed 33000/189300 spectrum_queries [ERROR:] Cannot initialize for sequence: nVAPYAIESIYVKGLSC[160]Tc[61], unknown mods may exist in spectrum 20240927_SW-KF_S2_sup_Slot2-40_1_8061_diatracer.182145.182145.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nDQQFKC[160]TGSMc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_sup_Slot2-40_1_8061_diatracer.182548.182548.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nSGGRVVLTQGC[160]LALGVSGAc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_sup_Slot2-40_1_8061_diatracer.183730.183730.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nGARVTHLADEWGFDTVTc[61], unknown mods may exist in spectrum 20240927_SW-KF_S2_sup_Slot2-40_1_8061_diatracer.184420.184420.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nSVLVPTDYKLLSDAPPIc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_sup_Slot2-40_1_8061_diatracer.184532.184532.3 [INFO:] Please specify modification and rerun PTMProphet ... ​ [INFO:] processed 34000/189300 spectrum_queries [ERROR:] Cannot initialize for sequence: nPIGEEEVTSPPEGTVSVTc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_sup_Slot2-40_1_8061_diatracer.186761.186761.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nISGPC[160]IVC[160]SC[160]IAGVDFEc[61], unknown mods may exist in spectrum 20240927_SW-KF_S2_sup_Slot2-40_1_8061_diatracer.187292.187292.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nFEEPLLQEIPGEFIYc[61], unknown mods may exist in spectrum 20240927_SW-KF_S2_sup_Slot2-40_1_8061_diatracer.190483.190483.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nPEVPM[147]HTLHPc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_sup_Slot2-40_1_8061_diatracer.191078.191078.2 [INFO:] Please specify modification and rerun PTMProphet ... ​ [INFO:] processed 35000/189300 spectrum_queries [ERROR:] Cannot initialize for sequence: nGM[147]TTVDDFFQGc[61], unknown mods may exist in spectrum 20240927_SW-KF_S2_sup_Slot2-40_1_8061_diatracer.191707.191707.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nNIISLLNVFTPc[61], unknown mods may exist in spectrum 20240927_SW-KF_S2_sup_Slot2-40_1_8061_diatracer.191900.191900.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nDAPMQAGVPWLLLTPSGSc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_sup_Slot2-40_1_8061_diatracer.192197.192197.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nEPPEVHTNSYc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_sup_Slot2-40_1_8061_diatracer.195921.195921.2 [INFO:] Please specify modification and rerun PTMProphet ... ​ [INFO:] processed 36000/189300 spectrum_queries [ERROR:] Cannot initialize for sequence: nAALAPLLALC[160]LLPALLPPc[61], unknown mods may exist in spectrum 20240927_SW-KF_S2_sup_Slot2-40_1_8061_diatracer.197742.197742.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nEVQVLSQSM[147]PLTPHQAVPSGERc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_sup_Slot2-40_1_8061_diatracer.197795.197795.4 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nC[160]GVSLDPIQEGc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_sup_Slot2-40_1_8061_diatracer.198471.198471.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nSEVPEESAQKNTFVSYc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_sup_Slot2-40_1_8061_diatracer.198830.198830.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nLVERAQRLDQELLQAc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_sup_Slot2-40_1_8061_diatracer.200239.200239.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nC[160]STSVIYGATSAc[61], unknown mods may exist in spectrum 20240927_SW-KF_S2_sup_Slot2-40_1_8061_diatracer.200655.200655.2 [INFO:] Please specify modification and rerun PTMProphet ... ​ [INFO:] processed 37000/189300 spectrum_queries [ERROR:] Cannot initialize for sequence: nFAIQDISVEETSAKEGLc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_sup_Slot2-40_1_8061_diatracer.201926.201926.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nDLHNTNIEPMc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_sup_Slot2-40_1_8061_diatracer.203622.203622.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nDFSQLALDPSGNQLIVGAc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_sup_Slot2-40_1_8061_diatracer.204695.204695.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nEVSTLEFGLSAQSVQVEc[61], unknown mods may exist in spectrum 20240927_SW-KF_S2_sup_Slot2-40_1_8061_diatracer.204819.204819.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nFDLLLVDPNDc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_sup_Slot2-40_1_8061_diatracer.205107.205107.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nPSLSQVM[147]LFHVLLMQLc[61], unknown mods may exist in spectrum 20240927_SW-KF_S2_sup_Slot2-40_1_8061_diatracer.206588.206588.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nC[160]TPEGTLSYGLc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_sup_Slot2-40_1_8061_diatracer.206717.206717.2 [INFO:] Please specify modification and rerun PTMProphet ... ​ [INFO:] processed 38000/189300 spectrum_queries [ERROR:] Cannot initialize for sequence: nLTVTFVMVTFc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_sup_Slot2-40_1_8061_diatracer.207471.207471.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nLQGAQGAPDASRc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_sup_Slot2-40_1_8061_diatracer.207698.207698.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nQGAPGRWGSSNGc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_sup_Slot2-40_1_8061_diatracer.208052.208052.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nIEAC[160]D[158]GMAAGPGSGGEAGGAAc[61], unknown mods may exist in spectrum 20240927_SW-KF_S2_sup_Slot2-40_1_8061_diatracer.208146.208146.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nLQGAQGAPDASRc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_sup_Slot2-40_1_8061_diatracer.210127.210127.2 [INFO:] Please specify modification and rerun PTMProphet ... ​ [INFO:] processed 39000/189300 spectrum_queries [ERROR:] Cannot initialize for sequence: nDLVPTGVLVTNGTAQIHGTc[61], unknown mods may exist in spectrum 20240927_SW-KF_S2_sup_Slot2-40_1_8061_diatracer.211957.211957.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nIDAAEGPSDIPDc[61], unknown mods may exist in spectrum 20240927_SW-KF_S2_sup_Slot2-40_1_8061_diatracer.212242.212242.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nPSTPSGLMMPESGLAPGQPEVAFAAc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_sup_Slot2-40_1_8061_diatracer.213036.213036.4 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nTFPARHGGSHLc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_sup_Slot2-40_1_8061_diatracer.213436.213436.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nDLMQQLAQDPc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_sup_Slot2-40_1_8061_diatracer.214541.214541.2 [INFO:] Please specify modification and rerun PTMProphet ... ​ [INFO:] processed 40000/189300 spectrum_queries [ERROR:] Cannot initialize for sequence: nVEQAAAAASPSPSSFGTPFc[61], unknown mods may exist in spectrum 20240927_SW-KF_S2_sup_Slot2-40_1_8061_diatracer.217204.217204.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nAELEGVAVTAPRc[61], unknown mods may exist in spectrum 20240927_SW-KF_S2_sup_Slot2-40_1_8061_diatracer.217503.217503.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nSEVPEESAQKNTFVSYc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_sup_Slot2-40_1_8061_diatracer.218361.218361.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nWFVPGAAAAAAVAc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_sup_Slot2-40_1_8061_diatracer.219190.219190.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nDPSPVSGEc[61], unknown mods may exist in spectrum 20240927_SW-KF_S2_sup_Slot2-40_1_8061_diatracer.220632.220632.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nPLSIALAQRHc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_sup_Slot2-40_1_8061_diatracer.221189.221189.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nPRGVSQAPLLLc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_sup_Slot2-40_1_8061_diatracer.221398.221398.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nELIPSLC[160]LPEc[61], unknown mods may exist in spectrum 20240927_SW-KF_S2_sup_Slot2-40_1_8061_diatracer.222168.222168.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nGTPGTQSHc[61], unknown mods may exist in spectrum 20240927_SW-KF_S2_sup_Slot2-40_1_8061_diatracer.223139.223139.2 [INFO:] Please specify modification and rerun PTMProphet ... ​ [INFO:] processed 41000/189300 spectrum_queries [ERROR:] Cannot initialize for sequence: nAMPFAGVVc[61], unknown mods may exist in spectrum 20240927_SW-KF_S2_sup_Slot2-40_1_8061_diatracer.223652.223652.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nSGAQGEEPc[61], unknown mods may exist in spectrum 20240927_SW-KF_S2_sup_Slot2-40_1_8061_diatracer.223941.223941.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nGGADSVVFc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_sup_Slot2-40_1_8061_diatracer.224090.224090.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nPGSPSATPAPGGGADDPVc[61], unknown mods may exist in spectrum 20240927_SW-KF_S2_sup_Slot2-40_1_8061_diatracer.225076.225076.4 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nEKPRVLPPSLc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_sup_Slot2-40_1_8061_diatracer.225617.225617.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nAAPGELRc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_sup_Slot2-40_1_8061_diatracer.227292.227292.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nRESQTALVANQc[61], unknown mods may exist in spectrum 20240927_SW-KF_S2_sup_Slot2-40_1_8061_diatracer.229354.229354.3 [INFO:] Please specify modification and rerun PTMProphet ... ​ [INFO:] processed 42000/189300 spectrum_queries [ERROR:] Cannot initialize for sequence: nIYLTADNLVLNLQD[202]ESFTc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_sup_Slot2-40_1_8061_diatracer.234313.234313.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nSDTVADIESEPVVESTETEGTc[61], unknown mods may exist in spectrum 20240927_SW-KF_S2_sup_Slot2-40_1_8061_diatracer.235883.235883.2 [INFO:] Please specify modification and rerun PTMProphet ... ​ [INFO:] processed 43000/189300 spectrum_queries [ERROR:] Cannot initialize for sequence: nIYLTADNLVLNLQD[202]ESFTc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_sup_Slot2-40_1_8061_diatracer.238023.238023.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nLAQQQAALLMQQE[216]Ec[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_sup_Slot2-40_1_8061_diatracer.239807.239807.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nFGADLLATDYQGNTALc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_sup_Slot2-40_1_8061_diatracer.240742.240742.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nTGLGEDGAGLFFHATTSEGESATLSWc[61], unknown mods may exist in spectrum 20240927_SW-KF_S2_sup_Slot2-40_1_8061_diatracer.241860.241860.3 [INFO:] Please specify modification and rerun PTMProphet ... ​ [INFO:] processed 44000/189300 spectrum_queries [ERROR:] Cannot initialize for sequence: nETLQELTSHC[160]DDMEc[61], unknown mods may exist in spectrum 20240927_SW-KF_S2_sup_Slot2-40_1_8061_diatracer.243740.243740.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nSC[160]SQMSLNGETLSYFc[61], unknown mods may exist in spectrum 20240927_SW-KF_S2_sup_Slot2-40_1_8061_diatracer.244125.244125.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nGTPSPDTAGAASEAGRELc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_sup_Slot2-40_1_8061_diatracer.244308.244308.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nELLSTITDPSVIVMADc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_sup_Slot2-40_1_8061_diatracer.244809.244809.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nAFWYGQLSGMVEPLAc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_sup_Slot2-40_1_8061_diatracer.245312.245312.2 [INFO:] Please specify modification and rerun PTMProphet ... ​ [INFO:] processed 45000/189300 spectrum_queries [ERROR:] Cannot initialize for sequence: nPFVALGSGEESPLEGWc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_sup_Slot2-40_1_8061_diatracer.248442.248442.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nQAEADAGVRWWQSMIc[61], unknown mods may exist in spectrum 20240927_SW-KF_S2_sup_Slot2-40_1_8061_diatracer.249378.249378.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nQID[158]LSSAD[158]AAQEHEEDHTSTPNPc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_sup_Slot2-40_1_8061_diatracer.253395.253395.3 [INFO:] Please specify modification and rerun PTMProphet ... ​ [INFO:] processed 46000/189300 spectrum_queries [ERROR:] Cannot initialize for sequence: nEKFTNENVYFEVQVc[61], unknown mods may exist in spectrum 20240927_SW-KF_S2_sup_Slot2-40_1_8061_diatracer.255391.255391.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nLGSAIFSSGDDLGEDDEDAPM[147]ITGFSDDVPMVIAc[61], unknown mods may exist in spectrum 20240927_SW-KF_S2_sup_Slot2-40_1_8061_diatracer.257777.257777.4 [INFO:] Please specify modification and rerun PTMProphet ... ​ [INFO:] processed 48000/189300 spectrum_queries [ERROR:] Cannot initialize for sequence: nTQPQGEEVLSAQEPAPc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_sup_Slot2-40_1_8061_diatracer.268193.268193.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nLNDILEDNDEGASVAGGc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_sup_Slot2-40_1_8061_diatracer.269948.269948.2 [INFO:] Please specify modification and rerun PTMProphet ... ​ [INFO:] processed 49000/189300 spectrum_queries [ERROR:] Cannot initialize for sequence: nEGITAIGGTSTISSEGTQHSc[61], unknown mods may exist in spectrum 20240927_SW-KF_S2_sup_Slot2-40_1_8061_diatracer.274828.274828.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nFSPLMTAAGMISc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_sup_Slot2-40_1_8061_diatracer.276841.276841.2 [INFO:] Please specify modification and rerun PTMProphet ... ​ [INFO:] processed 50000/189300 spectrum_queries [ERROR:] Cannot initialize for sequence: nLC[160]SAPLGALGKC[160]c[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_sup_Slot2-40_1_8061_diatracer.278182.278182.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nLTGALTSQAQAILSPQSPKc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_sup_Slot2-40_1_8061_diatracer.278200.278200.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nYYKSALVQIYELEEHc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_sup_Slot2-40_1_8061_diatracer.279375.279375.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nWDSNVIETFDc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_sup_Slot2-40_1_8061_diatracer.279460.279460.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nAEGLM[147]LEKEVGALLLLVMc[61], unknown mods may exist in spectrum 20240927_SW-KF_S2_sup_Slot2-40_1_8061_diatracer.280261.280261.3 [INFO:] Please specify modification and rerun PTMProphet ... ​ [INFO:] processed 51000/189300 spectrum_queries [ERROR:] Cannot initialize for sequence: nQIC[160]TPQNSSASDNIEEQc[61], unknown mods may exist in spectrum 20240927_SW-KF_S2_sup_Slot2-40_1_8061_diatracer.284397.284397.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nAVGRGLQPKASRc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_sup_Slot2-40_1_8061_diatracer.285105.285105.2 [INFO:] Please specify modification and rerun PTMProphet ... ​ [INFO:] processed 52000/189300 spectrum_queries [ERROR:] Cannot initialize for sequence: nGVLGSDALNLQEc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_sup_Slot2-40_1_8061_diatracer.289041.289041.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nPEISLPSDFEHTIHVGFc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_sup_Slot2-40_1_8061_diatracer.290879.290879.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nLC[160]C[160]LHKPETGTSFSFFc[61], unknown mods may exist in spectrum 20240927_SW-KF_S2_sup_Slot2-40_1_8061_diatracer.291839.291839.3 [INFO:] Please specify modification and rerun PTMProphet ... ​ [INFO:] processed 53000/189300 spectrum_queries [ERROR:] Cannot initialize for sequence: nALFDGAEPGPGAGGGGLGAAAAAc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_sup_Slot2-40_1_8061_diatracer.296116.296116.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nQSNNIQVLHSVFDQSAEM[147]NEQIc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_sup_Slot2-40_1_8061_diatracer.297347.297347.4 [INFO:] Please specify modification and rerun PTMProphet ... ​ [INFO:] processed 54000/189300 spectrum_queries [ERROR:] Cannot initialize for sequence: nDPIHIVSVMSIc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_sup_Slot2-40_1_8061_diatracer.298727.298727.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nLNEQEGVPSVFNPPPSRPc[61], unknown mods may exist in spectrum 20240927_SW-KF_S2_sup_Slot2-40_1_8061_diatracer.300508.300508.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nTTWQEFVEDLGFWRVc[61], unknown mods may exist in spectrum 20240927_SW-KF_S2_sup_Slot2-40_1_8061_diatracer.301374.301374.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nPQTPAAAARRPEGTYAGTLc[61], unknown mods may exist in spectrum 20240927_SW-KF_S2_sup_Slot2-40_1_8061_diatracer.301925.301925.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nSNMVRTNPNVESHAVGVNc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_sup_Slot2-40_1_8061_diatracer.303373.303373.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nSQTDDEEM[147]TGEc[61], unknown mods may exist in spectrum 20240927_SW-KF_S2_sup_Slot2-40_1_8061_diatracer.303449.303449.2 [INFO:] Please specify modification and rerun PTMProphet ... ​ [INFO:] processed 55000/189300 spectrum_queries [ERROR:] Cannot initialize for sequence: nRSALQSINEWAAQTTD[158]GKLPEVTc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_sup_Slot2-40_1_8061_diatracer.307664.307664.4 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nAPAPAAGTEEWLc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_sup_Slot2-40_1_8061_diatracer.308378.308378.2 [INFO:] Please specify modification and rerun PTMProphet ... ​ [INFO:] processed 56000/189300 spectrum_queries [ERROR:] Cannot initialize for sequence: nQLEAEDAEGLEAc[61], unknown mods may exist in spectrum 20240927_SW-KF_S2_sup_Slot2-40_1_8061_diatracer.309573.309573.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nKNVHMNDNVLHSAFEVc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_sup_Slot2-40_1_8061_diatracer.310944.310944.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nQVQLVC[160]QLPHc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_sup_Slot2-40_1_8061_diatracer.311365.311365.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nSAGTLQAHHRPGc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_sup_Slot2-40_1_8061_diatracer.312086.312086.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nNLQEGQVTDPRGIPLPPQc[61], unknown mods may exist in spectrum 20240927_SW-KF_S2_sup_Slot2-40_1_8061_diatracer.312962.312962.3 [INFO:] Please specify modification and rerun PTMProphet ... ​ [INFO:] processed 57000/189300 spectrum_queries [ERROR:] Cannot initialize for sequence: nGAPGGAGSGGSGGGAHAc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_sup_Slot2-40_1_8061_diatracer.314142.314142.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nRLSGRGPAQPAAAc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_sup_Slot2-40_1_8061_diatracer.315646.315646.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: n[43]DLQPTVILAAEAc[61], unknown mods may exist in spectrum 20240927_SW-KF_S2_sup_Slot2-40_1_8061_diatracer.317410.317410.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nNEGPSGLPLEM[147]Sc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_sup_Slot2-40_1_8061_diatracer.317743.317743.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nEPLQHGGAGGFLAc[61], unknown mods may exist in spectrum 20240927_SW-KF_S2_sup_Slot2-40_1_8061_diatracer.318665.318665.2 [INFO:] Please specify modification and rerun PTMProphet ... ​ [INFO:] processed 58000/189300 spectrum_queries [ERROR:] Cannot initialize for sequence: nVIM[147]VMPKVGVAVETVIGDc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_sup_Slot2-40_1_8061_diatracer.318977.318977.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nNLEAQLNNISDc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_sup_Slot2-40_1_8061_diatracer.319534.319534.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nLLADEPGGSGARDAVSNVAPc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_sup_Slot2-40_1_8061_diatracer.322160.322160.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nLADKPGEETENIIDC[160]IEc[61], unknown mods may exist in spectrum 20240927_SW-KF_S2_sup_Slot2-40_1_8061_diatracer.322593.322593.3 [INFO:] Please specify modification and rerun PTMProphet ... ​ [INFO:] processed 59000/189300 spectrum_queries [ERROR:] Cannot initialize for sequence: nVTFNGLNQMIVc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_sup_Slot2-40_1_8061_diatracer.327091.327091.2 [INFO:] Please specify modification and rerun PTMProphet ... ​ [INFO:] processed 60000/189300 spectrum_queries [ERROR:] Cannot initialize for sequence: nHPGTSLPAASPVTc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_sup_Slot2-40_1_8061_diatracer.331451.331451.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nDVGNLAAAAc[61], unknown mods may exist in spectrum 20240927_SW-KF_S2_sup_Slot2-40_1_8061_diatracer.331685.331685.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nLQAVEVVITHLc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_sup_Slot2-40_1_8061_diatracer.332033.332033.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nPTGSGAAAAAAc[61], unknown mods may exist in spectrum 20240927_SW-KF_S2_sup_Slot2-40_1_8061_diatracer.333111.333111.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nIGNFLNYPHRc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_sup_Slot2-40_1_8061_diatracer.333725.333725.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nVTGGKTAMAc[61], unknown mods may exist in spectrum 20240927_SW-KF_S2_sup_Slot2-40_1_8061_diatracer.333768.333768.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nQGAGAPTAPc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_sup_Slot2-40_1_8061_diatracer.334205.334205.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nAPGAARSAGRAFLc[61], unknown mods may exist in spectrum 20240927_SW-KF_S2_sup_Slot2-40_1_8061_diatracer.334359.334359.3 [INFO:] Please specify modification and rerun PTMProphet ... ​ [INFO:] processed 61000/189300 spectrum_queries [ERROR:] Cannot initialize for sequence: nVTGGKTAMAc[61], unknown mods may exist in spectrum 20240927_SW-KF_S2_sup_Slot2-40_1_8061_diatracer.337068.337068.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nYKGGAAEAAc[61], unknown mods may exist in spectrum 20240927_SW-KF_S2_sup_Slot2-40_1_8061_diatracer.337141.337141.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nAASSSPDSPc[61], unknown mods may exist in spectrum 20240927_SW-KF_S2_sup_Slot2-40_1_8061_diatracer.338417.338417.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nGASGGGGLMNc[61], unknown mods may exist in spectrum 20240927_SW-KF_S2_sup_Slot2-40_1_8061_diatracer.339278.339278.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nRMTASLC[160]PRPAALQTc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_sup_Slot2-40_1_8061_diatracer.340365.340365.4 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nIEYLSEAc[61], unknown mods may exist in spectrum 20240927_SW-KF_S2_sup_Slot2-40_1_8061_diatracer.341057.341057.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nYKGGAAEAAc[61], unknown mods may exist in spectrum 20240927_SW-KF_S2_sup_Slot2-40_1_8061_diatracer.341139.341139.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nELLC[160]SGYc[61], unknown mods may exist in spectrum 20240927_SW-KF_S2_sup_Slot2-40_1_8061_diatracer.341354.341354.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nIQTRGPEc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_sup_Slot2-40_1_8061_diatracer.342946.342946.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nFC[160]LGLLSNVNRc[61], unknown mods may exist in spectrum 20240927_SW-KF_S2_sup_Slot2-40_1_8061_diatracer.343115.343115.3 [INFO:] Please specify modification and rerun PTMProphet ... ​ [INFO:] processed 62000/189300 spectrum_queries [ERROR:] Cannot initialize for sequence: nPDGDIGPSSc[61], unknown mods may exist in spectrum 20240927_SW-KF_S2_sup_Slot2-40_1_8061_diatracer.343758.343758.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nVTGGKTAMAc[61], unknown mods may exist in spectrum 20240927_SW-KF_S2_sup_Slot2-40_1_8061_diatracer.344496.344496.2 [INFO:] Please specify modification and rerun PTMProphet ... ​ [INFO:] processed 64000/189300 spectrum_queries [ERROR:] Cannot initialize for sequence: nDQPRHALEGPASMLLSc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_sup_Slot2-40_1_8061_diatracer.361758.361758.2 [INFO:] Please specify modification and rerun PTMProphet ... ​ [INFO:] processed 65000/189300 spectrum_queries [ERROR:] Cannot initialize for sequence: nAVEDAKGSSSDSTAGVKEc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_sup_Slot2-40_1_8061_diatracer.364796.364796.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nTTGIVMDSGDGVTHTVPIc[61], unknown mods may exist in spectrum 20240927_SW-KF_S2_sup_Slot2-40_1_8061_diatracer.365166.365166.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nAVEDAKGSSSDSTAGVKEc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_sup_Slot2-40_1_8061_diatracer.366101.366101.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nPTGSILPPQLLNSPYLc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_sup_Slot2-40_1_8061_diatracer.369274.369274.2 [INFO:] Please specify modification and rerun PTMProphet ... ​ [INFO:] processed 66000/189300 spectrum_queries [ERROR:] Cannot initialize for sequence: nQEGQVGHYELVMPQANc[61], unknown mods may exist in spectrum 20240927_SW-KF_S2_sup_Slot2-40_1_8061_diatracer.370343.370343.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nDQYSHLLSDHFLPYc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_sup_Slot2-40_1_8061_diatracer.373702.373702.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nTTGIVMDSGDGVTHTVPIc[61], unknown mods may exist in spectrum 20240927_SW-KF_S2_sup_Slot2-40_1_8061_diatracer.374312.374312.2 [INFO:] Please specify modification and rerun PTMProphet ... ​ [INFO:] processed 67000/189300 spectrum_queries [ERROR:] Cannot initialize for sequence: nDLVDFFSAEPGMPAFAc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_sup_Slot2-40_1_8061_diatracer.377013.377013.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nLVEVGGDVQLDSVRIFc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_sup_Slot2-40_1_8061_diatracer.380595.380595.2 [INFO:] Please specify modification and rerun PTMProphet ... ​ [INFO:] processed 68000/189300 spectrum_queries [ERROR:] Cannot initialize for sequence: nSSFLHLVSFWLRATKc[61], unknown mods may exist in spectrum 20240927_SW-KF_S2_sup_Slot2-40_1_8061_diatracer.383300.383300.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nDQYSHLLSDHFLPYc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_sup_Slot2-40_1_8061_diatracer.385467.385467.2 [INFO:] Please specify modification and rerun PTMProphet ... ​ [INFO:] processed 69000/189300 spectrum_queries [ERROR:] Cannot initialize for sequence: nENTEDTEPGFIAc[61], unknown mods may exist in spectrum 20240927_SW-KF_S2_sup_Slot2-40_1_8061_diatracer.388735.388735.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nVQNHLPASGPTQPc[61], unknown mods may exist in spectrum 20240927_SW-KF_S2_sup_Slot2-40_1_8061_diatracer.389426.389426.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nGGTGEGEIEFVGFFAGPTPAc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_sup_Slot2-40_1_8061_diatracer.390018.390018.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nLEQEEQGAATGPPPEPREc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_sup_Slot2-40_1_8061_diatracer.392327.392327.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nDWLFAPLQPSSc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_sup_Slot2-40_1_8061_diatracer.392531.392531.2 [INFO:] Please specify modification and rerun PTMProphet ... ​ [INFO:] processed 70000/189300 spectrum_queries [ERROR:] Cannot initialize for sequence: nPPSAAGPAGWAAQGSc[61], unknown mods may exist in spectrum 20240927_SW-KF_S2_sup_Slot2-40_1_8061_diatracer.396077.396077.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nELEELLLEASQESGQETLc[61], unknown mods may exist in spectrum 20240927_SW-KF_S2_sup_Slot2-40_1_8061_diatracer.396281.396281.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nGPAEAGC[160]LPGAQAGSc[61], unknown mods may exist in spectrum 20240927_SW-KF_S2_sup_Slot2-40_1_8061_diatracer.396605.396605.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nSELHIENLNM[147]Ec[61], unknown mods may exist in spectrum 20240927_SW-KF_S2_sup_Slot2-40_1_8061_diatracer.396755.396755.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nSVFASVDKVPDPSLC[160]SC[160]ISYMC[160]QSc[61], unknown mods may exist in spectrum 20240927_SW-KF_S2_sup_Slot2-40_1_8061_diatracer.397040.397040.4 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nSPAEC[160]REEHSKTPEERc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_sup_Slot2-40_1_8061_diatracer.397759.397759.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nAAIEETLLLESSc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_sup_Slot2-40_1_8061_diatracer.398247.398247.2 [INFO:] Please specify modification and rerun PTMProphet ... ​ [INFO:] processed 71000/189300 spectrum_queries [ERROR:] Cannot initialize for sequence: nFTLHAGPGC[160]SSRVSSIMSHc[61], unknown mods may exist in spectrum 20240927_SW-KF_S2_sup_Slot2-40_1_8061_diatracer.401539.401539.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nKSSTFIQEVIC[160]LFLSVVGc[61], unknown mods may exist in spectrum 20240927_SW-KF_S2_sup_Slot2-40_1_8061_diatracer.401654.401654.3 [INFO:] Please specify modification and rerun PTMProphet ... ​ [INFO:] processed 72000/189300 spectrum_queries [ERROR:] Cannot initialize for sequence: nLELNVPFEVPSPc[61], unknown mods may exist in spectrum 20240927_SW-KF_S2_sup_Slot2-40_1_8061_diatracer.404100.404100.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nPLVTDEAGMEALTc[61], unknown mods may exist in spectrum 20240927_SW-KF_S2_sup_Slot2-40_1_8061_diatracer.404302.404302.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nEAGEELEAASAQQc[61], unknown mods may exist in spectrum 20240927_SW-KF_S2_sup_Slot2-40_1_8061_diatracer.405939.405939.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nGQGTAATAQMVNMc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_sup_Slot2-40_1_8061_diatracer.408038.408038.2 [INFO:] Please specify modification and rerun PTMProphet ... ​ [INFO:] processed 73000/189300 spectrum_queries [ERROR:] Cannot initialize for sequence: nPSGSETARSVPDMc[61], unknown mods may exist in spectrum 20240927_SW-KF_S2_sup_Slot2-40_1_8061_diatracer.410883.410883.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nSPPPSLGGTC[160]SPIc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_sup_Slot2-40_1_8061_diatracer.412301.412301.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: n[43]TRSTSSPTASYNTTSAWMc[61], unknown mods may exist in spectrum 20240927_SW-KF_S2_sup_Slot2-40_1_8061_diatracer.412303.412303.3 [INFO:] Please specify modification and rerun PTMProphet ... ​ [INFO:] processed 74000/189300 spectrum_queries [ERROR:] Cannot initialize for sequence: nIQPSEPRDSAVYFC[160]ASGLc[61], unknown mods may exist in spectrum 20240927_SW-KF_S2_sup_Slot2-40_1_8061_diatracer.415156.415156.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nHHGHEHGHEHAc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_sup_Slot2-40_1_8061_diatracer.415288.415288.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nRWQETRGASSSAc[61], unknown mods may exist in spectrum 20240927_SW-KF_S2_sup_Slot2-40_1_8061_diatracer.415801.415801.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nIPARFFTTPSQAKGIDFQc[61], unknown mods may exist in spectrum 20240927_SW-KF_S2_sup_Slot2-40_1_8061_diatracer.415957.415957.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nLEGWHAPASTNHGTDLDPNc[61], unknown mods may exist in spectrum 20240927_SW-KF_S2_sup_Slot2-40_1_8061_diatracer.416191.416191.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nEVGGIIIGDDNLSc[61], unknown mods may exist in spectrum 20240927_SW-KF_S2_sup_Slot2-40_1_8061_diatracer.416904.416904.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nLFYELINESWSGPGGASAAc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_sup_Slot2-40_1_8061_diatracer.417856.417856.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nLEPFGQPGLGNAEc[61], unknown mods may exist in spectrum 20240927_SW-KF_S2_sup_Slot2-40_1_8061_diatracer.417872.417872.2 [INFO:] Please specify modification and rerun PTMProphet ... ​ [INFO:] processed 75000/189300 spectrum_queries [ERROR:] Cannot initialize for sequence: nGDPGPDGPSGPPGPPc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_sup_Slot2-40_1_8061_diatracer.421059.421059.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nGEEGAGGGEGVEFLc[61], unknown mods may exist in spectrum 20240927_SW-KF_S2_sup_Slot2-40_1_8061_diatracer.421808.421808.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nTLQQMEEVVGSVc[61], unknown mods may exist in spectrum 20240927_SW-KF_S2_sup_Slot2-40_1_8061_diatracer.422314.422314.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nITTITGSTAAVFHc[61], unknown mods may exist in spectrum 20240927_SW-KF_S2_sup_Slot2-40_1_8061_diatracer.422382.422382.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nSQGRSRQAAGTGTAc[61], unknown mods may exist in spectrum 20240927_SW-KF_S2_sup_Slot2-40_1_8061_diatracer.423865.423865.2 [INFO:] Please specify modification and rerun PTMProphet ... ​ [INFO:] processed 76000/189300 spectrum_queries [ERROR:] Cannot initialize for sequence: nDQPVAESPRPLAc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_sup_Slot2-40_1_8061_diatracer.425084.425084.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nGEGEGDWGQESEAc[61], unknown mods may exist in spectrum 20240927_SW-KF_S2_sup_Slot2-40_1_8061_diatracer.426095.426095.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nQFSC[160]LSLLSSWDYRDPc[61], unknown mods may exist in spectrum 20240927_SW-KF_S2_sup_Slot2-40_1_8061_diatracer.426356.426356.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nTLQQMEEVVGSVc[61], unknown mods may exist in spectrum 20240927_SW-KF_S2_sup_Slot2-40_1_8061_diatracer.427188.427188.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nQMAAAMPSTTPRc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_sup_Slot2-40_1_8061_diatracer.428887.428887.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nYTAILEKAANDPc[61], unknown mods may exist in spectrum 20240927_SW-KF_S2_sup_Slot2-40_1_8061_diatracer.429133.429133.2 [INFO:] Please specify modification and rerun PTMProphet ... ​ [INFO:] processed 77000/189300 spectrum_queries [ERROR:] Cannot initialize for sequence: nEEEDDDMKELENWAGSMc[61], unknown mods may exist in spectrum 20240927_SW-KF_S2_sup_Slot2-40_1_8061_diatracer.430726.430726.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nGDPGPDGPSGPPGPPc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_sup_Slot2-40_1_8061_diatracer.430782.430782.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nDPSFVNIPQQTQSWYLGc[61], unknown mods may exist in spectrum 20240927_SW-KF_S2_sup_Slot2-40_1_8061_diatracer.431422.431422.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nTLQQMEEVVGSVc[61], unknown mods may exist in spectrum 20240927_SW-KF_S2_sup_Slot2-40_1_8061_diatracer.432040.432040.2 [INFO:] Please specify modification and rerun PTMProphet ... ​ [INFO:] processed 78000/189300 spectrum_queries [ERROR:] Cannot initialize for sequence: nNSMSPGVTHRPPSAGNTGGLMGGDLTSGc[61], unknown mods may exist in spectrum 20240927_SW-KF_S2_sup_Slot2-40_1_8061_diatracer.436197.436197.4 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nSVFASVDKVPDPSLC[160]SC[160]ISYMC[160]QSc[61], unknown mods may exist in spectrum 20240927_SW-KF_S2_sup_Slot2-40_1_8061_diatracer.438359.438359.4 [INFO:] Please specify modification and rerun PTMProphet ... ​ [INFO:] processed 79000/189300 spectrum_queries [ERROR:] Cannot initialize for sequence: nLQTKTIKATVYLC[160]FSLLc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_sup_Slot2-40_1_8061_diatracer.440815.440815.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nSLRPGGGGVGPGPGAAGPM[147]LGGVVc[61], unknown mods may exist in spectrum 20240927_SW-KF_S2_sup_Slot2-40_1_8061_diatracer.442920.442920.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nLQEEQFVNAVEc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_sup_Slot2-40_1_8061_diatracer.443165.443165.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nPEAALNINc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_sup_Slot2-40_1_8061_diatracer.444152.444152.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nSAGGPASSVQNFSRc[61], unknown mods may exist in spectrum 20240927_SW-KF_S2_sup_Slot2-40_1_8061_diatracer.444485.444485.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nEGAGELEALc[61], unknown mods may exist in spectrum 20240927_SW-KF_S2_sup_Slot2-40_1_8061_diatracer.445472.445472.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nLGSVLSPESc[61], unknown mods may exist in spectrum 20240927_SW-KF_S2_sup_Slot2-40_1_8061_diatracer.445534.445534.2 [INFO:] Please specify modification and rerun PTMProphet ... ​ [INFO:] processed 80000/189300 spectrum_queries [ERROR:] Cannot initialize for sequence: nSSASAPDVDDPEAFPALAc[61], unknown mods may exist in spectrum 20240927_SW-KF_S2_sup_Slot2-40_1_8061_diatracer.446010.446010.4 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nQGIAPSAM[147]Ac[61], unknown mods may exist in spectrum 20240927_SW-KF_S2_sup_Slot2-40_1_8061_diatracer.446045.446045.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nPDLALAGGASc[61], unknown mods may exist in spectrum 20240927_SW-KF_S2_sup_Slot2-40_1_8061_diatracer.446265.446265.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nLEE[172]EFPSQSFPc[61], unknown mods may exist in spectrum 20240927_SW-KF_S2_sup_Slot2-40_1_8061_diatracer.447916.447916.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nYSVAGGYSVC[160]PAAc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_sup_Slot2-40_1_8061_diatracer.449053.449053.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nTAVSPPDQRDEAPLTRc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_sup_Slot2-40_1_8061_diatracer.450137.450137.4 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nPLGDWSYAYMQc[61], unknown mods may exist in spectrum 20240927_SW-KF_S2_sup_Slot2-40_1_8061_diatracer.451162.451162.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nAQSLGLLGDEHWc[61], unknown mods may exist in spectrum 20240927_SW-KF_S2_sup_Slot2-40_1_8061_diatracer.451178.451178.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nYYVSKGLENIDc[61], unknown mods may exist in spectrum 20240927_SW-KF_S2_sup_Slot2-40_1_8061_diatracer.452075.452075.3 [INFO:] Please specify modification and rerun PTMProphet ... ​ [INFO:] processed 81000/189300 spectrum_queries [ERROR:] Cannot initialize for sequence: nPVPLHQGAc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_sup_Slot2-40_1_8061_diatracer.453458.453458.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nTGVGGTGIDIc[61], unknown mods may exist in spectrum 20240927_SW-KF_S2_sup_Slot2-40_1_8061_diatracer.454025.454025.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nPERTSPPAc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_sup_Slot2-40_1_8061_diatracer.454234.454234.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nVITVLVGKc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_sup_Slot2-40_1_8061_diatracer.454981.454981.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nYYVSKGLENIDc[61], unknown mods may exist in spectrum 20240927_SW-KF_S2_sup_Slot2-40_1_8061_diatracer.455745.455745.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nGAAVLPATGVWFGAc[61], unknown mods may exist in spectrum 20240927_SW-KF_S2_sup_Slot2-40_1_8061_diatracer.455905.455905.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nGASGPGARGDPSGGEAc[61], unknown mods may exist in spectrum 20240927_SW-KF_S2_sup_Slot2-40_1_8061_diatracer.457577.457577.3 [INFO:] Please specify modification and rerun PTMProphet ... ​ [INFO:] processed 82000/189300 spectrum_queries [ERROR:] Cannot initialize for sequence: nGGESGHSLPC[160]VLPc[61], unknown mods may exist in spectrum 20240927_SW-KF_S2_sup_Slot2-40_1_8061_diatracer.463198.463198.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nDPRSPDAAGATILc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_sup_Slot2-40_1_8061_diatracer.463311.463311.3 [INFO:] Please specify modification and rerun PTMProphet ... ​ [INFO:] processed 83000/189300 spectrum_queries [ERROR:] Cannot initialize for sequence: nVITVLVGKc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_sup_Slot2-40_1_8061_diatracer.467253.467253.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nLNIVSLEAc[61], unknown mods may exist in spectrum 20240927_SW-KF_S2_sup_Slot2-40_1_8061_diatracer.468179.468179.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nFPDHSLLAINSFc[61], unknown mods may exist in spectrum 20240927_SW-KF_S2_sup_Slot2-40_1_8061_diatracer.468890.468890.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nLNIVSLEAc[61], unknown mods may exist in spectrum 20240927_SW-KF_S2_sup_Slot2-40_1_8061_diatracer.470643.470643.2 [INFO:] Please specify modification and rerun PTMProphet ... ​ [INFO:] processed 84000/189300 spectrum_queries [ERROR:] Cannot initialize for sequence: nNNLSFIETSALD[202]STNVEEAFc[61], unknown mods may exist in spectrum 20240927_SW-KF_S2_sup_Slot2-40_1_8061_diatracer.472987.472987.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nNNLSFIETSALD[202]STNVEEAFc[61], unknown mods may exist in spectrum 20240927_SW-KF_S2_sup_Slot2-40_1_8061_diatracer.473228.473228.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nGGSYSQAASSDSAQGSD[158]VSLTAC[160]c[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_sup_Slot2-40_1_8061_diatracer.475379.475379.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nGGSYSQAASSDSAQGSD[158]VSLTAC[160]c[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_sup_Slot2-40_1_8061_diatracer.476103.476103.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nGGSYSQAASSDSAQGSD[158]VSLTAC[160]c[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_sup_Slot2-40_1_8061_diatracer.476346.476346.2 [INFO:] Please specify modification and rerun PTMProphet ... ​ [INFO:] processed 85000/189300 spectrum_queries [ERROR:] Cannot initialize for sequence: nEEMFAKGQPVAPYNTTc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_sup_Slot2-40_1_8061_diatracer.477665.477665.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nLSFGLEDEPLETATKEc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_sup_Slot2-40_1_8061_diatracer.477775.477775.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nSWAWGRITSSFSFASNc[61], unknown mods may exist in spectrum 20240927_SW-KF_S2_sup_Slot2-40_1_8061_diatracer.480805.480805.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nTTPSATSLPQTVVMTSPVc[61], unknown mods may exist in spectrum 20240927_SW-KF_S2_sup_Slot2-40_1_8061_diatracer.481134.481134.2 [INFO:] Please specify modification and rerun PTMProphet ... ​ [INFO:] processed 86000/189300 spectrum_queries [ERROR:] Cannot initialize for sequence: nQLTVESDESGDDLLD[158]Ic[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_sup_Slot2-40_1_8061_diatracer.486234.486234.2 [INFO:] Please specify modification and rerun PTMProphet ... ​ [INFO:] processed 87000/189300 spectrum_queries [ERROR:] Cannot initialize for sequence: nTDAAVMDQEPAGNRTANc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_sup_Slot2-40_1_8061_diatracer.492555.492555.2 [INFO:] Please specify modification and rerun PTMProphet ... ​ [INFO:] processed 88000/189300 spectrum_queries [ERROR:] Cannot initialize for sequence: nSVVEGISSQPGNSPSGTVVc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_sup_Slot2-40_1_8061_diatracer.497142.497142.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nMDFVAGLSVGLTAIPQALAYAEVAGLPPc[61], unknown mods may exist in spectrum 20240927_SW-KF_S2_sup_Slot2-40_1_8061_diatracer.498057.498057.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nTEEIQRPDGGGGSSSTVDc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_sup_Slot2-40_1_8061_diatracer.501501.501501.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nQEGQVGHYELVM[147]PQANc[61], unknown mods may exist in spectrum 20240927_SW-KF_S2_sup_Slot2-40_1_8061_diatracer.502436.502436.2 [INFO:] Please specify modification and rerun PTMProphet ... ​ [INFO:] processed 89000/189300 spectrum_queries [ERROR:] Cannot initialize for sequence: nVSQVSTPGAGVSPKKAHSC[160]EMC[160]GAILGc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_sup_Slot2-40_1_8061_diatracer.502739.502739.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nPLDNASDLTPSTKDDTAc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_sup_Slot2-40_1_8061_diatracer.503208.503208.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nIFSSHSETANLFPEAHc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_sup_Slot2-40_1_8061_diatracer.503936.503936.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nLTATSASWVQAIPLPQPPEc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_sup_Slot2-40_1_8061_diatracer.504575.504575.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nTLGTAAGLLLWAAAc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_sup_Slot2-40_1_8061_diatracer.505646.505646.2 [INFO:] Please specify modification and rerun PTMProphet ... ​ [INFO:] processed 90000/189300 spectrum_queries [ERROR:] Cannot initialize for sequence: nFWDPKTGQSLATc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_sup_Slot2-40_1_8061_diatracer.508674.508674.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nFWDPKTGQSLATc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_sup_Slot2-40_1_8061_diatracer.508677.508677.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nGVVLDIEEQVRAc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_sup_Slot2-40_1_8061_diatracer.509800.509800.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nMFLNTSRPEDKc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_sup_Slot2-40_1_8061_diatracer.510451.510451.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nDTVQALC[160]FWISc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_sup_Slot2-40_1_8061_diatracer.510604.510604.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nVGSHPEGGASWLSTAANFLSRSFYWc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_sup_Slot2-40_1_8061_diatracer.512022.512022.4 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nAPGPAEGLILSAC[160]GAc[61], unknown mods may exist in spectrum 20240927_SW-KF_S2_sup_Slot2-40_1_8061_diatracer.512971.512971.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nELSVC[160]LSSFSELLC[160]SSDVAc[61], unknown mods may exist in spectrum 20240927_SW-KF_S2_sup_Slot2-40_1_8061_diatracer.513047.513047.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nVTAC[160]TPSDGPGGGAAAc[61], unknown mods may exist in spectrum 20240927_SW-KF_S2_sup_Slot2-40_1_8061_diatracer.513204.513204.2 [INFO:] Please specify modification and rerun PTMProphet ... ​ [INFO:] processed 91000/189300 spectrum_queries [ERROR:] Cannot initialize for sequence: nLEPFGQPGLGNAEc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_sup_Slot2-40_1_8061_diatracer.514548.514548.2 [INFO:] Please specify modification and rerun PTMProphet ... ​ [INFO:] processed 92000/189300 spectrum_queries [ERROR:] Cannot initialize for sequence: nPEPRSYQTLEKESLVPFc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_sup_Slot2-40_1_8061_diatracer.518938.518938.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nPPSAAGPAGWAAQGSc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_sup_Slot2-40_1_8061_diatracer.519150.519150.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nLEPFGQPGLGNAEc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_sup_Slot2-40_1_8061_diatracer.519525.519525.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nEPAAAAAALLGGEEIc[61], unknown mods may exist in spectrum 20240927_SW-KF_S2_sup_Slot2-40_1_8061_diatracer.520003.520003.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nQVEEGSLDLDELSSSAAAKAc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_sup_Slot2-40_1_8061_diatracer.523701.523701.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nVGSHPEGGASWLSTAANFLSRSFYWc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_sup_Slot2-40_1_8061_diatracer.523712.523712.4 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nDNELMMNWHLAc[61], unknown mods may exist in spectrum 20240927_SW-KF_S2_sup_Slot2-40_1_8061_diatracer.524102.524102.2 [INFO:] Please specify modification and rerun PTMProphet ... ​ [INFO:] processed 93000/189300 spectrum_queries [ERROR:] Cannot initialize for sequence: nSLHYSAALGSIGGGLVVVTRGc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_sup_Slot2-40_1_8061_diatracer.525930.525930.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nGVVLDIEEQVRAc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_sup_Slot2-40_1_8061_diatracer.526167.526167.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nSMSTSNLTHPRMLNNHPDc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_sup_Slot2-40_1_8061_diatracer.526856.526856.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nYVNLDAWNRELLDKYC[160]c[61], unknown mods may exist in spectrum 20240927_SW-KF_S2_sup_Slot2-40_1_8061_diatracer.528454.528454.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nEPAAAAAALLGGEEIc[61], unknown mods may exist in spectrum 20240927_SW-KF_S2_sup_Slot2-40_1_8061_diatracer.529370.529370.2 [INFO:] Please specify modification and rerun PTMProphet ... ​ [INFO:] processed 94000/189300 spectrum_queries [ERROR:] Cannot initialize for sequence: nPAGGAVLHSPGAM[147]FGALSAWRc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_sup_Slot2-40_1_8061_diatracer.529746.529746.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nC[160]VAVGPGGYAVVVC[160]IGQGWTAc[61], unknown mods may exist in spectrum 20240927_SW-KF_S2_sup_Slot2-40_1_8061_diatracer.529946.529946.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nEPAAAAAALLGGEEIc[61], unknown mods may exist in spectrum 20240927_SW-KF_S2_sup_Slot2-40_1_8061_diatracer.534040.534040.2 [INFO:] Please specify modification and rerun PTMProphet ... ​ [INFO:] processed 95000/189300 spectrum_queries [ERROR:] Cannot initialize for sequence: nHFWLYQALVVAC[160]PWVYc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_sup_Slot2-40_1_8061_diatracer.536371.536371.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nGGEGAAADQGC[160]AVC[160]SAGKGAHGMc[61], unknown mods may exist in spectrum 20240927_SW-KF_S2_sup_Slot2-40_1_8061_diatracer.536953.536953.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nSYPIQAVEEEASc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_sup_Slot2-40_1_8061_diatracer.540240.540240.2 [INFO:] Please specify modification and rerun PTMProphet ... ​ [INFO:] processed 96000/189300 spectrum_queries [ERROR:] Cannot initialize for sequence: nQANGEDIDVTSNDc[61], unknown mods may exist in spectrum 20240927_SW-KF_S2_sup_Slot2-40_1_8061_diatracer.542884.542884.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nLEPFGQPGLGNAEc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_sup_Slot2-40_1_8061_diatracer.544888.544888.2 [INFO:] Please specify modification and rerun PTMProphet ... ​ [INFO:] processed 97000/189300 spectrum_queries [ERROR:] Cannot initialize for sequence: nEGIAQTC[160]SQC[160]PEc[61], unknown mods may exist in spectrum 20240927_SW-KF_S2_sup_Slot2-40_1_8061_diatracer.547531.547531.2 [INFO:] Please specify modification and rerun PTMProphet ... ​ [INFO:] processed 98000/189300 spectrum_queries [ERROR:] Cannot initialize for sequence: nLSSMSEGLSDMPEc[61], unknown mods may exist in spectrum 20240927_SW-KF_S2_sup_Slot2-40_1_8061_diatracer.552499.552499.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nGFSC[160]LSLLNSWDc[61], unknown mods may exist in spectrum 20240927_SW-KF_S2_sup_Slot2-40_1_8061_diatracer.555627.555627.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nFTVDSFGNYASC[160]GQIDFSc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_sup_Slot2-40_1_8061_diatracer.555895.555895.3 [INFO:] Please specify modification and rerun PTMProphet ... ​ [INFO:] processed 99000/189300 spectrum_queries [ERROR:] Cannot initialize for sequence: nDLDSALLAEATLELSTTENTc[61], unknown mods may exist in spectrum 20240927_SW-KF_S2_sup_Slot2-40_1_8061_diatracer.557782.557782.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nLPSVGEESTc[61], unknown mods may exist in spectrum 20240927_SW-KF_S2_sup_Slot2-40_1_8061_diatracer.558689.558689.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nVLEYMAAGAc[61], unknown mods may exist in spectrum 20240927_SW-KF_S2_sup_Slot2-40_1_8061_diatracer.558936.558936.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nHAPPHPVRDLYSc[61], unknown mods may exist in spectrum 20240927_SW-KF_S2_sup_Slot2-40_1_8061_diatracer.559985.559985.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nPGLSSWPC[160]c[61], unknown mods may exist in spectrum 20240927_SW-KF_S2_sup_Slot2-40_1_8061_diatracer.561488.561488.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nYTGMLETVc[61], unknown mods may exist in spectrum 20240927_SW-KF_S2_sup_Slot2-40_1_8061_diatracer.561746.561746.2 [INFO:] Please specify modification and rerun PTMProphet ... ​ [INFO:] processed 100000/189300 spectrum_queries [ERROR:] Cannot initialize for sequence: nTC[160]IAQQQGGAAEPGc[61], unknown mods may exist in spectrum 20240927_SW-KF_S2_sup_Slot2-40_1_8061_diatracer.563327.563327.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nTTAAGGFLHc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_sup_Slot2-40_1_8061_diatracer.563566.563566.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nLSMVMQKLEASDAc[61], unknown mods may exist in spectrum 20240927_SW-KF_S2_sup_Slot2-40_1_8061_diatracer.563974.563974.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nNYIQASGLAc[61], unknown mods may exist in spectrum 20240927_SW-KF_S2_sup_Slot2-40_1_8061_diatracer.564001.564001.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nC[160]LFLGELKDDINc[61], unknown mods may exist in spectrum 20240927_SW-KF_S2_sup_Slot2-40_1_8061_diatracer.564278.564278.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nGQTNNAASASASNSTc[61], unknown mods may exist in spectrum 20240927_SW-KF_S2_sup_Slot2-40_1_8061_diatracer.567936.567936.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nYAISM[147]NTGFELSc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_sup_Slot2-40_1_8061_diatracer.568230.568230.3 [INFO:] Please specify modification and rerun PTMProphet ... ​ [INFO:] processed 101000/189300 spectrum_queries [ERROR:] Cannot initialize for sequence: nLQKHGVC[160]IRVLGc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_sup_Slot2-40_1_8061_diatracer.568980.568980.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nC[160]LFLGELKDDINc[61], unknown mods may exist in spectrum 20240927_SW-KF_S2_sup_Slot2-40_1_8061_diatracer.569152.569152.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nSILEVHQRIHIc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_sup_Slot2-40_1_8061_diatracer.569816.569816.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nVTASSPVDLLPWKc[61], unknown mods may exist in spectrum 20240927_SW-KF_S2_sup_Slot2-40_1_8061_diatracer.570341.570341.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nAPGPAEGLILSAC[160]GAc[61], unknown mods may exist in spectrum 20240927_SW-KF_S2_sup_Slot2-40_1_8061_diatracer.571453.571453.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nGDGSRFPEVFSADc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_sup_Slot2-40_1_8061_diatracer.573831.573831.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nGHLAFLSGQc[61], unknown mods may exist in spectrum 20240927_SW-KF_S2_sup_Slot2-40_1_8061_diatracer.575186.575186.2 [INFO:] Please specify modification and rerun PTMProphet ... ​ [INFO:] processed 102000/189300 spectrum_queries [ERROR:] Cannot initialize for sequence: nYIYYLDWMWSc[61], unknown mods may exist in spectrum 20240927_SW-KF_S2_sup_Slot2-40_1_8061_diatracer.577256.577256.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nAPGPAEGLILSAC[160]GAc[61], unknown mods may exist in spectrum 20240927_SW-KF_S2_sup_Slot2-40_1_8061_diatracer.577947.577947.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nLREEAVGSc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_sup_Slot2-40_1_8061_diatracer.579227.579227.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nPSATGPDGPSEEAEAc[61], unknown mods may exist in spectrum 20240927_SW-KF_S2_sup_Slot2-40_1_8061_diatracer.579982.579982.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nLPQGALPLDc[61], unknown mods may exist in spectrum 20240927_SW-KF_S2_sup_Slot2-40_1_8061_diatracer.580036.580036.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nSTSPPPSPEc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_sup_Slot2-40_1_8061_diatracer.580606.580606.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nEKTEMEGVc[61], unknown mods may exist in spectrum 20240927_SW-KF_S2_sup_Slot2-40_1_8061_diatracer.581584.581584.2 [INFO:] Please specify modification and rerun PTMProphet ... ​ [INFO:] processed 103000/189300 spectrum_queries [ERROR:] Cannot initialize for sequence: nISIAHKNGQDLEGc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_sup_Slot2-40_1_8061_diatracer.583656.583656.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nC[160]LFLGELKDDINc[61], unknown mods may exist in spectrum 20240927_SW-KF_S2_sup_Slot2-40_1_8061_diatracer.583799.583799.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nVVGQQDLMINNPLc[61], unknown mods may exist in spectrum 20240927_SW-KF_S2_sup_Slot2-40_1_8061_diatracer.584110.584110.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nGAAAAGGGGGGAAAc[61], unknown mods may exist in spectrum 20240927_SW-KF_S2_sup_Slot2-40_1_8061_diatracer.584574.584574.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nDLPSSPRGGc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_sup_Slot2-40_1_8061_diatracer.584862.584862.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nYVNAFSARTLVMc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_sup_Slot2-40_1_8061_diatracer.585202.585202.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nVGVDTKKGAEQITGc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_sup_Slot2-40_1_8061_diatracer.585600.585600.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nEKEGSSSAAc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_sup_Slot2-40_1_8061_diatracer.586157.586157.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nYGTNNRIGQPRPc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_sup_Slot2-40_1_8061_diatracer.586635.586635.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nGEASVLESPQEAPEc[61], unknown mods may exist in spectrum 20240927_SW-KF_S2_sup_Slot2-40_1_8061_diatracer.587303.587303.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nGPGAATKGDEGQEGEc[61], unknown mods may exist in spectrum 20240927_SW-KF_S2_sup_Slot2-40_1_8061_diatracer.587920.587920.3 [INFO:] Please specify modification and rerun PTMProphet ... ​ [INFO:] processed 104000/189300 spectrum_queries [ERROR:] Cannot initialize for sequence: nITGLDPAGPNFEYc[61], unknown mods may exist in spectrum 20240927_SW-KF_S2_sup_Slot2-40_1_8061_diatracer.590927.590927.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nVAVSTEETNc[61], unknown mods may exist in spectrum 20240927_SW-KF_S2_sup_Slot2-40_1_8061_diatracer.592219.592219.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nLAEQTLESDPLAQc[61], unknown mods may exist in spectrum 20240927_SW-KF_S2_sup_Slot2-40_1_8061_diatracer.593173.593173.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nGPERELAEVAAVAQc[61], unknown mods may exist in spectrum 20240927_SW-KF_S2_sup_Slot2-40_1_8061_diatracer.593791.593791.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nLDEGSASAPAc[61], unknown mods may exist in spectrum 20240927_SW-KF_S2_sup_Slot2-40_1_8061_diatracer.594449.594449.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nKMAAVSSSGSc[61], unknown mods may exist in spectrum 20240927_SW-KF_S2_sup_Slot2-40_1_8061_diatracer.594601.594601.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nDKITGQSLGYGFVNYIDc[61], unknown mods may exist in spectrum 20240927_SW-KF_S2_sup_Slot2-40_1_8061_diatracer.594612.594612.4 [INFO:] Please specify modification and rerun PTMProphet ... ​ [INFO:] processed 105000/189300 spectrum_queries [ERROR:] Cannot initialize for sequence: nLAGSALTDKHSDKSc[61], unknown mods may exist in spectrum 20240927_SW-KF_S2_sup_Slot2-40_1_8061_diatracer.595337.595337.3 [INFO:] Please specify modification and rerun PTMProphet ... ​ [INFO:] processed 106000/189300 spectrum_queries [ERROR:] Cannot initialize for sequence: nGRFTSGSAPGPTTPVGEAEAc[61], unknown mods may exist in spectrum 20240927_SW-KF_S2_sup_Slot2-40_1_8061_diatracer.603821.603821.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nSASDDPSRAIQTLQMELc[61], unknown mods may exist in spectrum 20240927_SW-KF_S2_sup_Slot2-40_1_8061_diatracer.605252.605252.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nSASDDPSRAIQTLQMELc[61], unknown mods may exist in spectrum 20240927_SW-KF_S2_sup_Slot2-40_1_8061_diatracer.606340.606340.2 [INFO:] Please specify modification and rerun PTMProphet ... ​ [INFO:] processed 107000/189300 spectrum_queries [ERROR:] Cannot initialize for sequence: nSASDDPSRAIQTLQMELc[61], unknown mods may exist in spectrum 20240927_SW-KF_S2_sup_Slot2-40_1_8061_diatracer.607427.607427.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nLDAVGAVGGGEGAAAASGAVGPVc[61], unknown mods may exist in spectrum 20240927_SW-KF_S2_sup_Slot2-40_1_8061_diatracer.608383.608383.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nYTIVVSATASDAAPLQYLc[61], unknown mods may exist in spectrum 20240927_SW-KF_S2_sup_Slot2-40_1_8061_diatracer.612324.612324.2 [INFO:] Please specify modification and rerun PTMProphet ... ​ [INFO:] processed 108000/189300 spectrum_queries [ERROR:] Cannot initialize for sequence: nSALATLVPPQASGC[160]TFLPc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_sup_Slot2-40_1_8061_diatracer.616428.616428.2 [INFO:] Please specify modification and rerun PTMProphet ... ​ [INFO:] processed 109000/189300 spectrum_queries [ERROR:] Cannot initialize for sequence: nSASDDPSRAIQTLQMELc[61], unknown mods may exist in spectrum 20240927_SW-KF_S2_sup_Slot2-40_1_8061_diatracer.619374.619374.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nTGSVVTFPGLSNAC[160]SRARDTASGSEAWAc[61], unknown mods may exist in spectrum 20240927_SW-KF_S2_sup_Slot2-40_1_8061_diatracer.621220.621220.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nFYD[202]ANYDGKE[216]YDPVc[61], unknown mods may exist in spectrum 20240927_SW-KF_S2_sup_Slot2-40_1_8061_diatracer.622897.622897.2 [INFO:] Please specify modification and rerun PTMProphet ... ​ [INFO:] processed 110000/189300 spectrum_queries [ERROR:] Cannot initialize for sequence: nGM[147]YITYASSNVSSSTFYFVc[61], unknown mods may exist in spectrum 20240927_SW-KF_S2_sup_Slot2-40_1_8061_diatracer.625071.625071.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nTHHSGEC[160]FQLPEGLSAQGPGc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_sup_Slot2-40_1_8061_diatracer.627552.627552.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nFDVGDPTVTFQFAVAQHAEAc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_sup_Slot2-40_1_8061_diatracer.628863.628863.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nEQEELALFVAARc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_sup_Slot2-40_1_8061_diatracer.629843.629843.2 [INFO:] Please specify modification and rerun PTMProphet ... ​ [INFO:] processed 111000/189300 spectrum_queries [ERROR:] Cannot initialize for sequence: nELSFRGTAASVEGAc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_sup_Slot2-40_1_8061_diatracer.630672.630672.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nELEAAPVQVYDKc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_sup_Slot2-40_1_8061_diatracer.631407.631407.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nLLEAHEEQNVDSc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_sup_Slot2-40_1_8061_diatracer.632290.632290.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nIDAASAIQGTPSSSSc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_sup_Slot2-40_1_8061_diatracer.634652.634652.2 [INFO:] Please specify modification and rerun PTMProphet ... ​ [INFO:] processed 112000/189300 spectrum_queries [ERROR:] Cannot initialize for sequence: nKDVAC[160]VLLHDPLSPSKVGVLLFGAPVDc[61], unknown mods may exist in spectrum 20240927_SW-KF_S2_sup_Slot2-40_1_8061_diatracer.635763.635763.4 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nEQEELALFVAARc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_sup_Slot2-40_1_8061_diatracer.636363.636363.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nQSFVPTSYVSSGTSWINPSSc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_sup_Slot2-40_1_8061_diatracer.636930.636930.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nGEESKISYPNIFFMIDSFc[61], unknown mods may exist in spectrum 20240927_SW-KF_S2_sup_Slot2-40_1_8061_diatracer.637866.637866.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nAGERAGGSSSAAGPGGAGHGAGVAAAAc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_sup_Slot2-40_1_8061_diatracer.638824.638824.3 [INFO:] Please specify modification and rerun PTMProphet ... ​ [INFO:] processed 113000/189300 spectrum_queries [ERROR:] Cannot initialize for sequence: nTKTC[160]MQNAVDQWNGFGC[160]DMVAELLAc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_sup_Slot2-40_1_8061_diatracer.645623.645623.4 [INFO:] Please specify modification and rerun PTMProphet ... ​ [INFO:] processed 114000/189300 spectrum_queries [ERROR:] Cannot initialize for sequence: nREEEMEMSDDEIEEMTETKETEESc[61], unknown mods may exist in spectrum 20240927_SW-KF_S2_sup_Slot2-40_1_8061_diatracer.646250.646250.4 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nTFLQPSGNMDDSGFFSIQKc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_sup_Slot2-40_1_8061_diatracer.647403.647403.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nEIEEEPLSEDLEc[61], unknown mods may exist in spectrum 20240927_SW-KF_S2_sup_Slot2-40_1_8061_diatracer.647852.647852.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nQDHPSSMGVYGQESGGFSGPGc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_sup_Slot2-40_1_8061_diatracer.648687.648687.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nGGIDHINALDENLc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_sup_Slot2-40_1_8061_diatracer.649674.649674.2 [INFO:] Please specify modification and rerun PTMProphet ... ​ [INFO:] processed 115000/189300 spectrum_queries [ERROR:] Cannot initialize for sequence: nGNLIPPPSGC[160]SIGLVGPAVLALFVGLLGAAGc[61], unknown mods may exist in spectrum 20240927_SW-KF_S2_sup_Slot2-40_1_8061_diatracer.651961.651961.4 [INFO:] Please specify modification and rerun PTMProphet ... ​ [INFO:] processed 116000/189300 spectrum_queries [ERROR:] Cannot initialize for sequence: nGEESKISYPNIFFMIDSFc[61], unknown mods may exist in spectrum 20240927_SW-KF_S2_sup_Slot2-40_1_8061_diatracer.657417.657417.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nVC[160]C[160]DQQPEGRAPVAEADAAAc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_sup_Slot2-40_1_8061_diatracer.658304.658304.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nELEAAPVQVYDKc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_sup_Slot2-40_1_8061_diatracer.659482.659482.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nEPGPWGGPAQAGGAEAPGATALC[160]c[61], unknown mods may exist in spectrum 20240927_SW-KF_S2_sup_Slot2-40_1_8061_diatracer.659605.659605.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nLHTQQSPTSQWHC[160]RC[160]RGc[61], unknown mods may exist in spectrum 20240927_SW-KF_S2_sup_Slot2-40_1_8061_diatracer.659752.659752.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nPDVPMDLVDPSHVSGFTVSPc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_sup_Slot2-40_1_8061_diatracer.659819.659819.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nSSSVSSSAASRMIIc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_sup_Slot2-40_1_8061_diatracer.660457.660457.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nLDDQISRNSVHVc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_sup_Slot2-40_1_8061_diatracer.660615.660615.2 [INFO:] Please specify modification and rerun PTMProphet ... ​ [INFO:] processed 117000/189300 spectrum_queries [ERROR:] Cannot initialize for sequence: nEQALEELVAC[160]AQc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_sup_Slot2-40_1_8061_diatracer.661751.661751.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nYM[147]MDIATVGPYLSGNED[158]Rc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_sup_Slot2-40_1_8061_diatracer.661980.661980.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nQQSAFLPHPSHSSc[61], unknown mods may exist in spectrum 20240927_SW-KF_S2_sup_Slot2-40_1_8061_diatracer.662496.662496.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nSPASDTYIVFGE[172]Ac[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_sup_Slot2-40_1_8061_diatracer.663366.663366.2 [INFO:] Please specify modification and rerun PTMProphet ... ​ [INFO:] processed 118000/189300 spectrum_queries [ERROR:] Cannot initialize for sequence: nDMVVGFANLGILHc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_sup_Slot2-40_1_8061_diatracer.667267.667267.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nHVFGESDELIGQKVAHALAEc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_sup_Slot2-40_1_8061_diatracer.667912.667912.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nEC[160]LNNKQQLMRc[61], unknown mods may exist in spectrum 20240927_SW-KF_S2_sup_Slot2-40_1_8061_diatracer.669527.669527.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nVLSPTSVFKSC[160]AFc[61], unknown mods may exist in spectrum 20240927_SW-KF_S2_sup_Slot2-40_1_8061_diatracer.669928.669928.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nQDKEELSIEAAQc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_sup_Slot2-40_1_8061_diatracer.670464.670464.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nAWSAGLLLLLQLARLWPKGc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_sup_Slot2-40_1_8061_diatracer.670964.670964.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nLM[147]SSAEEC[160]C[160]RNLAFSLALRSM[147]QNSPc[61], unknown mods may exist in spectrum 20240927_SW-KF_S2_sup_Slot2-40_1_8061_diatracer.671749.671749.4 [INFO:] Please specify modification and rerun PTMProphet ... ​ [INFO:] processed 119000/189300 spectrum_queries [ERROR:] Cannot initialize for sequence: nKEEDGFAAAAAAATALSVGC[160]SKc[61], unknown mods may exist in spectrum 20240927_SW-KF_S2_sup_Slot2-40_1_8061_diatracer.672664.672664.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nEQEELALFVAARc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_sup_Slot2-40_1_8061_diatracer.673295.673295.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nLHTLAEGTFTPLTALSHLQINENPFDc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_sup_Slot2-40_1_8061_diatracer.674186.674186.4 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nNASFYANSSTLYYc[61], unknown mods may exist in spectrum 20240927_SW-KF_S2_sup_Slot2-40_1_8061_diatracer.675984.675984.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nAGE[172]GAAAAAAAAAAAAATGc[61], unknown mods may exist in spectrum 20240927_SW-KF_S2_sup_Slot2-40_1_8061_diatracer.676929.676929.3 [INFO:] Please specify modification and rerun PTMProphet ... ​ [INFO:] processed 120000/189300 spectrum_queries [ERROR:] Cannot initialize for sequence: nDQWFWENFSSLc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_sup_Slot2-40_1_8061_diatracer.677951.677951.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nSTGC[160]VARSLc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_sup_Slot2-40_1_8061_diatracer.678106.678106.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nANGQIVPSYVHPHc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_sup_Slot2-40_1_8061_diatracer.679028.679028.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nIETGSLSEKc[61], unknown mods may exist in spectrum 20240927_SW-KF_S2_sup_Slot2-40_1_8061_diatracer.679082.679082.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nVLGLTVSQNc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_sup_Slot2-40_1_8061_diatracer.679672.679672.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nHILDGTAEEc[61], unknown mods may exist in spectrum 20240927_SW-KF_S2_sup_Slot2-40_1_8061_diatracer.679776.679776.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nHILDGTAEEc[61], unknown mods may exist in spectrum 20240927_SW-KF_S2_sup_Slot2-40_1_8061_diatracer.679777.679777.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nVSGVHGSLGFc[61], unknown mods may exist in spectrum 20240927_SW-KF_S2_sup_Slot2-40_1_8061_diatracer.681002.681002.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nIQHLQSQTGLNGGLSHIDc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_sup_Slot2-40_1_8061_diatracer.681092.681092.4 [INFO:] Please specify modification and rerun PTMProphet ... ​ [INFO:] processed 121000/189300 spectrum_queries [ERROR:] Cannot initialize for sequence: nLHGPHSLIAAPQIC[160]c[61], unknown mods may exist in spectrum 20240927_SW-KF_S2_sup_Slot2-40_1_8061_diatracer.686448.686448.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nTDNQNDPEGDQENc[61], unknown mods may exist in spectrum 20240927_SW-KF_S2_sup_Slot2-40_1_8061_diatracer.687178.687178.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nFTLLTQAGAc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_sup_Slot2-40_1_8061_diatracer.688987.688987.2 [INFO:] Please specify modification and rerun PTMProphet ... ​ [INFO:] processed 122000/189300 spectrum_queries [ERROR:] Cannot initialize for sequence: nNASFYANSSTLYYc[61], unknown mods may exist in spectrum 20240927_SW-KF_S2_sup_Slot2-40_1_8061_diatracer.689881.689881.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nPPSC[160]PLLC[160]c[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_sup_Slot2-40_1_8061_diatracer.690188.690188.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nC[160]VAGSPQPVc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_sup_Slot2-40_1_8061_diatracer.690568.690568.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nKGDGGGAGGGGGGGc[61], unknown mods may exist in spectrum 20240927_SW-KF_S2_sup_Slot2-40_1_8061_diatracer.690834.690834.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nGNTISGSSAEc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_sup_Slot2-40_1_8061_diatracer.691066.691066.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nLSNITQYLc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_sup_Slot2-40_1_8061_diatracer.692415.692415.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nVQLRNLASKVLPFc[61], unknown mods may exist in spectrum 20240927_SW-KF_S2_sup_Slot2-40_1_8061_diatracer.693530.693530.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nNIVTVFPFSKAGRc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_sup_Slot2-40_1_8061_diatracer.693639.693639.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nELLLALSWLLARGc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_sup_Slot2-40_1_8061_diatracer.693898.693898.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nFSVSGKNIEENLQc[61], unknown mods may exist in spectrum 20240927_SW-KF_S2_sup_Slot2-40_1_8061_diatracer.694908.694908.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nELLDTVTAPc[61], unknown mods may exist in spectrum 20240927_SW-KF_S2_sup_Slot2-40_1_8061_diatracer.694974.694974.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nVQLRNLASKVLPFc[61], unknown mods may exist in spectrum 20240927_SW-KF_S2_sup_Slot2-40_1_8061_diatracer.695504.695504.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nHILDGTAEEc[61], unknown mods may exist in spectrum 20240927_SW-KF_S2_sup_Slot2-40_1_8061_diatracer.695662.695662.2 [INFO:] Please specify modification and rerun PTMProphet ... ​ [INFO:] processed 123000/189300 spectrum_queries [ERROR:] Cannot initialize for sequence: nELLLALSWLLARGc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_sup_Slot2-40_1_8061_diatracer.697855.697855.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nNENEYILVLFYSc[61], unknown mods may exist in spectrum 20240927_SW-KF_S2_sup_Slot2-40_1_8061_diatracer.698033.698033.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nIQHLQSQTGLNGGLSHIDc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_sup_Slot2-40_1_8061_diatracer.698962.698962.4 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nLLEKFSGLTSKLGTc[61], unknown mods may exist in spectrum 20240927_SW-KF_S2_sup_Slot2-40_1_8061_diatracer.699852.699852.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nSQAWSDMPQIIKc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_sup_Slot2-40_1_8061_diatracer.700642.700642.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nTAGPSNSATC[160]c[61], unknown mods may exist in spectrum 20240927_SW-KF_S2_sup_Slot2-40_1_8061_diatracer.700813.700813.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nEVASQLGYEc[61], unknown mods may exist in spectrum 20240927_SW-KF_S2_sup_Slot2-40_1_8061_diatracer.702132.702132.2 [INFO:] Please specify modification and rerun PTMProphet ... ​ [INFO:] processed 124000/189300 spectrum_queries [ERROR:] Cannot initialize for sequence: nHVADGEDHAc[61], unknown mods may exist in spectrum 20240927_SW-KF_S2_sup_Slot2-40_1_8061_diatracer.702387.702387.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nPGQAAAFNVTc[61], unknown mods may exist in spectrum 20240927_SW-KF_S2_sup_Slot2-40_1_8061_diatracer.703365.703365.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nMSPTGAPSSNc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_sup_Slot2-40_1_8061_diatracer.703926.703926.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nLEAMLFAIDEINKc[61], unknown mods may exist in spectrum 20240927_SW-KF_S2_sup_Slot2-40_1_8061_diatracer.704000.704000.3 [INFO:] Please specify modification and rerun PTMProphet ... ​ [INFO:] processed 125000/189300 spectrum_queries [ERROR:] Cannot initialize for sequence: nLTTMQALAEc[61], unknown mods may exist in spectrum 20240927_SW-KF_S2_sup_Slot2-40_1_8061_diatracer.709415.709415.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nATISLDQHTc[61], unknown mods may exist in spectrum 20240927_SW-KF_S2_sup_Slot2-40_1_8061_diatracer.709557.709557.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nGAPTRASASSAc[61], unknown mods may exist in spectrum 20240927_SW-KF_S2_sup_Slot2-40_1_8061_diatracer.713249.713249.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nDQGPAGQGGQAc[61], unknown mods may exist in spectrum 20240927_SW-KF_S2_sup_Slot2-40_1_8061_diatracer.713499.713499.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nTEKSMMPHTPLHPc[61], unknown mods may exist in spectrum 20240927_SW-KF_S2_sup_Slot2-40_1_8061_diatracer.713864.713864.3 [INFO:] Please specify modification and rerun PTMProphet ... ​ [INFO:] processed 126000/189300 spectrum_queries [ERROR:] Cannot initialize for sequence: nVHVVALATEQERQIC[160]Rc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_sup_Slot2-40_1_8061_diatracer.714495.714495.4 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nQAPPPAAC[160]PFSSHLc[61], unknown mods may exist in spectrum 20240927_SW-KF_S2_sup_Slot2-40_1_8061_diatracer.715063.715063.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nENQANTSVVc[61], unknown mods may exist in spectrum 20240927_SW-KF_S2_sup_Slot2-40_1_8061_diatracer.716732.716732.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nEFAGPAVAAEEAGTRc[61], unknown mods may exist in spectrum 20240927_SW-KF_S2_sup_Slot2-40_1_8061_diatracer.716939.716939.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nM[147]VWEILHQQLLc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_sup_Slot2-40_1_8061_diatracer.718584.718584.3 [INFO:] Please specify modification and rerun PTMProphet ... ​ [INFO:] processed 127000/189300 spectrum_queries [ERROR:] Cannot initialize for sequence: nDQGGEHPWAGQLLFFGVC[160]AMSVVMLSc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_sup_Slot2-40_1_8061_diatracer.723390.723390.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nNPPPAPQPPGQTTVPFPMc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_sup_Slot2-40_1_8061_diatracer.723803.723803.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nLGGSPTNGNSMAPSSPDSDPc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_sup_Slot2-40_1_8061_diatracer.723975.723975.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nFTFTVPAMPALTPAPSPASc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_sup_Slot2-40_1_8061_diatracer.725292.725292.2 [INFO:] Please specify modification and rerun PTMProphet ... ​ [INFO:] processed 128000/189300 spectrum_queries [ERROR:] Cannot initialize for sequence: nEAAWAITNATSGGTPE[172]QIc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_sup_Slot2-40_1_8061_diatracer.731128.731128.2 [INFO:] Please specify modification and rerun PTMProphet ... ​ [INFO:] processed 129000/189300 spectrum_queries [ERROR:] Cannot initialize for sequence: nM[147]RGFQASLSSHIPPTAVGc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_sup_Slot2-40_1_8061_diatracer.736225.736225.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nVINVDDDGNELGSGIMELc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_sup_Slot2-40_1_8061_diatracer.737447.737447.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nPESYVSSVSSGSLSSNSSAAc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_sup_Slot2-40_1_8061_diatracer.737698.737698.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nPALAAGPAALLAALLAC[160]GVALc[61], unknown mods may exist in spectrum 20240927_SW-KF_S2_sup_Slot2-40_1_8061_diatracer.739862.739862.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nEAAWAITNATSGGTPE[172]QIc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_sup_Slot2-40_1_8061_diatracer.740740.740740.2 [INFO:] Please specify modification and rerun PTMProphet ... ​ [INFO:] processed 130000/189300 spectrum_queries [ERROR:] Cannot initialize for sequence: nD[158]LEAEIE[172]AKLKADDDDc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_sup_Slot2-40_1_8061_diatracer.741019.741019.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nDLAPPSEPSESFQEHTVc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_sup_Slot2-40_1_8061_diatracer.742856.742856.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nIVEPAMWAYTGAASc[61], unknown mods may exist in spectrum 20240927_SW-KF_S2_sup_Slot2-40_1_8061_diatracer.746324.746324.2 [INFO:] Please specify modification and rerun PTMProphet ... ​ [INFO:] processed 131000/189300 spectrum_queries [ERROR:] Cannot initialize for sequence: nYQLNLPPYPDTEC[160]VYRLQc[61], unknown mods may exist in spectrum 20240927_SW-KF_S2_sup_Slot2-40_1_8061_diatracer.747336.747336.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nC[160]QELLNYIMDTVKDSSNGAc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_sup_Slot2-40_1_8061_diatracer.747780.747780.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nLVDESSANPGMRSSc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_sup_Slot2-40_1_8061_diatracer.749241.749241.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nDIKDEIAHISDMNc[61], unknown mods may exist in spectrum 20240927_SW-KF_S2_sup_Slot2-40_1_8061_diatracer.749502.749502.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nHWLSDNRVLQGNQRVANESc[61], unknown mods may exist in spectrum 20240927_SW-KF_S2_sup_Slot2-40_1_8061_diatracer.750261.750261.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nFLLM[147]SMYNPSFAc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_sup_Slot2-40_1_8061_diatracer.750889.750889.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nVASSSSGNNFLSGSPc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_sup_Slot2-40_1_8061_diatracer.751534.751534.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nPPAAMGPGGGGGGALEDc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_sup_Slot2-40_1_8061_diatracer.751742.751742.2 [INFO:] Please specify modification and rerun PTMProphet ... ​ [INFO:] processed 133000/189300 spectrum_queries [ERROR:] Cannot initialize for sequence: nLNDDALELDDC[160]AEc[61], unknown mods may exist in spectrum 20240927_SW-KF_S2_sup_Slot2-40_1_8061_diatracer.759249.759249.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nEYEALSDVNVTTSc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_sup_Slot2-40_1_8061_diatracer.760217.760217.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nHWLSDNRVLQGNQRVANESc[61], unknown mods may exist in spectrum 20240927_SW-KF_S2_sup_Slot2-40_1_8061_diatracer.760334.760334.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nVASSSSGNNFLSGSPc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_sup_Slot2-40_1_8061_diatracer.761609.761609.2 [INFO:] Please specify modification and rerun PTMProphet ... ​ [INFO:] processed 134000/189300 spectrum_queries [ERROR:] Cannot initialize for sequence: nGFAQVAIDAKVALTGMAC[160]FHIc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_sup_Slot2-40_1_8061_diatracer.763533.763533.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nQVPVEEARSKAEEc[61], unknown mods may exist in spectrum 20240927_SW-KF_S2_sup_Slot2-40_1_8061_diatracer.764381.764381.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nAALVSGAVSINSC[160]PAAc[61], unknown mods may exist in spectrum 20240927_SW-KF_S2_sup_Slot2-40_1_8061_diatracer.765045.765045.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nYRTQSVQPQAQPEEITVAHSc[61], unknown mods may exist in spectrum 20240927_SW-KF_S2_sup_Slot2-40_1_8061_diatracer.767640.767640.3 [INFO:] Please specify modification and rerun PTMProphet ... ​ [INFO:] processed 135000/189300 spectrum_queries [ERROR:] Cannot initialize for sequence: nQQC[160]LGAAKQGPVGNc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_sup_Slot2-40_1_8061_diatracer.770787.770787.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nAYQGFPHFVIYSc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_sup_Slot2-40_1_8061_diatracer.770852.770852.2 [INFO:] Please specify modification and rerun PTMProphet ... ​ [INFO:] processed 136000/189300 spectrum_queries [ERROR:] Cannot initialize for sequence: nMPDVPMDLVDPSHVSGFTVSPc[61], unknown mods may exist in spectrum 20240927_SW-KF_S2_sup_Slot2-40_1_8061_diatracer.776374.776374.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nHWLSDNRVLQGNQRVANESc[61], unknown mods may exist in spectrum 20240927_SW-KF_S2_sup_Slot2-40_1_8061_diatracer.776459.776459.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nSPYHC[160]SFPMQGDAc[61], unknown mods may exist in spectrum 20240927_SW-KF_S2_sup_Slot2-40_1_8061_diatracer.777536.777536.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nVTGFVTEALQGVYNc[61], unknown mods may exist in spectrum 20240927_SW-KF_S2_sup_Slot2-40_1_8061_diatracer.777647.777647.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nPGAVAHSC[160]NSSTLGGc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_sup_Slot2-40_1_8061_diatracer.777784.777784.2 [INFO:] Please specify modification and rerun PTMProphet ... ​ [INFO:] processed 137000/189300 spectrum_queries [ERROR:] Cannot initialize for sequence: nKDPQHSLSLHTKAMC[160]IPLNc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_sup_Slot2-40_1_8061_diatracer.780904.780904.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nMRFLPLSTQTTVKYAVYANc[61], unknown mods may exist in spectrum 20240927_SW-KF_S2_sup_Slot2-40_1_8061_diatracer.781967.781967.3 [INFO:] Please specify modification and rerun PTMProphet ... ​ [INFO:] processed 138000/189300 spectrum_queries [ERROR:] Cannot initialize for sequence: nLIQLDDVTYHGFPSLQALAGGc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_sup_Slot2-40_1_8061_diatracer.787450.787450.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nVASSSSGNNFLSGSPc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_sup_Slot2-40_1_8061_diatracer.787816.787816.2 [INFO:] Please specify modification and rerun PTMProphet ... ​ [INFO:] processed 139000/189300 spectrum_queries [ERROR:] Cannot initialize for sequence: nKKSNILISFPSIIYVFSLHc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_sup_Slot2-40_1_8061_diatracer.791332.791332.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nKAALDEAQGVGLDSTGc[61], unknown mods may exist in spectrum 20240927_SW-KF_S2_sup_Slot2-40_1_8061_diatracer.791965.791965.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nLTEASSSATYc[61], unknown mods may exist in spectrum 20240927_SW-KF_S2_sup_Slot2-40_1_8061_diatracer.793075.793075.2 [INFO:] Please specify modification and rerun PTMProphet ... ​ [INFO:] processed 140000/189300 spectrum_queries [ERROR:] Cannot initialize for sequence: n[43]GPPPGHNAAMALSQYc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_sup_Slot2-40_1_8061_diatracer.796213.796213.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nYEYAGSC[160]Ic[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_sup_Slot2-40_1_8061_diatracer.796357.796357.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nLVTTVTEIAGc[61], unknown mods may exist in spectrum 20240927_SW-KF_S2_sup_Slot2-40_1_8061_diatracer.796669.796669.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nYVAFLGHLRSLGASGc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_sup_Slot2-40_1_8061_diatracer.798486.798486.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nANPQAC[160]RGSAc[61], unknown mods may exist in spectrum 20240927_SW-KF_S2_sup_Slot2-40_1_8061_diatracer.800158.800158.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nIEELNQSLAc[61], unknown mods may exist in spectrum 20240927_SW-KF_S2_sup_Slot2-40_1_8061_diatracer.801558.801558.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nDHLSPLSSSMPFWc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_sup_Slot2-40_1_8061_diatracer.801576.801576.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nDHLSPLSSSMPFWc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_sup_Slot2-40_1_8061_diatracer.801577.801577.3 [INFO:] Please specify modification and rerun PTMProphet ... ​ [INFO:] processed 141000/189300 spectrum_queries [ERROR:] Cannot initialize for sequence: nYIPC[160]YQLFRM[147]Wc[61], unknown mods may exist in spectrum 20240927_SW-KF_S2_sup_Slot2-40_1_8061_diatracer.802952.802952.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nLTESVQTDAAc[61], unknown mods may exist in spectrum 20240927_SW-KF_S2_sup_Slot2-40_1_8061_diatracer.804580.804580.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nFSMVMNKAEVLEAAc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_sup_Slot2-40_1_8061_diatracer.804971.804971.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nVGDQGQQQGSc[61], unknown mods may exist in spectrum 20240927_SW-KF_S2_sup_Slot2-40_1_8061_diatracer.805314.805314.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nPGQDGAQAGALc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_sup_Slot2-40_1_8061_diatracer.806303.806303.2 [INFO:] Please specify modification and rerun PTMProphet ... ​ [INFO:] processed 142000/189300 spectrum_queries [ERROR:] Cannot initialize for sequence: nSNGVC[160]ATISAc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_sup_Slot2-40_1_8061_diatracer.808251.808251.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nHEKVANGLLGDQGLPGVFVLc[61], unknown mods may exist in spectrum 20240927_SW-KF_S2_sup_Slot2-40_1_8061_diatracer.810390.810390.4 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nSTWSPTM[147]VVLHLDc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_sup_Slot2-40_1_8061_diatracer.810528.810528.3 [INFO:] Please specify modification and rerun PTMProphet ... ​ [INFO:] processed 143000/189300 spectrum_queries [ERROR:] Cannot initialize for sequence: nQWSDANGGKc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_sup_Slot2-40_1_8061_diatracer.814342.814342.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nAFPANLGDGPSc[61], unknown mods may exist in spectrum 20240927_SW-KF_S2_sup_Slot2-40_1_8061_diatracer.816238.816238.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: n[43]GPPPGHNAAMALSQYc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_sup_Slot2-40_1_8061_diatracer.816361.816361.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nLDC[160]SPVYTGc[61], unknown mods may exist in spectrum 20240927_SW-KF_S2_sup_Slot2-40_1_8061_diatracer.817049.817049.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nDHLSPLSSSMPFWc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_sup_Slot2-40_1_8061_diatracer.817250.817250.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nLIEESSVDEc[61], unknown mods may exist in spectrum 20240927_SW-KF_S2_sup_Slot2-40_1_8061_diatracer.819567.819567.2 [INFO:] Please specify modification and rerun PTMProphet ... ​ [INFO:] processed 144000/189300 spectrum_queries [ERROR:] Cannot initialize for sequence: nGPAVWSGPGAAGGGLGGRc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_sup_Slot2-40_1_8061_diatracer.820243.820243.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nIC[160]MIC[160]SVPGMMSFc[61], unknown mods may exist in spectrum 20240927_SW-KF_S2_sup_Slot2-40_1_8061_diatracer.821043.821043.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nGQSRGSQTQQPGRVC[160]GGQAGc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_sup_Slot2-40_1_8061_diatracer.823774.823774.4 [INFO:] Please specify modification and rerun PTMProphet ... ​ [INFO:] processed 145000/189300 spectrum_queries [ERROR:] Cannot initialize for sequence: nFTPGTFTNQIQAAFc[61], unknown mods may exist in spectrum 20240927_SW-KF_S2_sup_Slot2-40_1_8061_diatracer.828324.828324.3 [INFO:] Please specify modification and rerun PTMProphet ... ​ [INFO:] processed 146000/189300 spectrum_queries [ERROR:] Cannot initialize for sequence: nEFASSRQTDc[61], unknown mods may exist in spectrum 20240927_SW-KF_S2_sup_Slot2-40_1_8061_diatracer.833893.833893.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nHEAFESQTLVAVSSc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_sup_Slot2-40_1_8061_diatracer.835165.835165.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nNQAAMFSLDc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_sup_Slot2-40_1_8061_diatracer.836083.836083.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nGQSRGSQTQQPGRVC[160]GGQAGc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_sup_Slot2-40_1_8061_diatracer.837223.837223.4 [INFO:] Please specify modification and rerun PTMProphet ... ​ [INFO:] processed 147000/189300 spectrum_queries [ERROR:] Cannot initialize for sequence: nPEGGGAPGAAQAc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_sup_Slot2-40_1_8061_diatracer.837707.837707.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nLVTTVTEIAGc[61], unknown mods may exist in spectrum 20240927_SW-KF_S2_sup_Slot2-40_1_8061_diatracer.839226.839226.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nNSNTVVFVKc[61], unknown mods may exist in spectrum 20240927_SW-KF_S2_sup_Slot2-40_1_8061_diatracer.839231.839231.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nLHALLMPPEc[61], unknown mods may exist in spectrum 20240927_SW-KF_S2_sup_Slot2-40_1_8061_diatracer.842106.842106.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nLAGWAEESGNGSSARAc[61], unknown mods may exist in spectrum 20240927_SW-KF_S2_sup_Slot2-40_1_8061_diatracer.842271.842271.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nLVIQSYFGKQILHc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_sup_Slot2-40_1_8061_diatracer.843321.843321.3 [INFO:] Please specify modification and rerun PTMProphet ... ​ [INFO:] processed 149000/189300 spectrum_queries [ERROR:] Cannot initialize for sequence: nNENLAANFLLSQNFDDEc[61], unknown mods may exist in spectrum 20240927_SW-KF_S2_sup_Slot2-40_1_8061_diatracer.854679.854679.2 [INFO:] Please specify modification and rerun PTMProphet ... ​ [INFO:] processed 150000/189300 spectrum_queries [ERROR:] Cannot initialize for sequence: nPPPEPAASLMLVPSLAGRQc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_sup_Slot2-40_1_8061_diatracer.856796.856796.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nPPPEPAASLMLVPSLAGRQc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_sup_Slot2-40_1_8061_diatracer.862762.862762.2 [INFO:] Please specify modification and rerun PTMProphet ... ​ [INFO:] processed 151000/189300 spectrum_queries [ERROR:] Cannot initialize for sequence: nGEFSAAPDPGWPDC[160]FNSGc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_sup_Slot2-40_1_8061_diatracer.863113.863113.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nNENLAANFLLSQNFDDEc[61], unknown mods may exist in spectrum 20240927_SW-KF_S2_sup_Slot2-40_1_8061_diatracer.863196.863196.2 [INFO:] Please specify modification and rerun PTMProphet ... ​ [INFO:] processed 152000/189300 spectrum_queries [ERROR:] Cannot initialize for sequence: nLLPEYHPGSFLDFc[61], unknown mods may exist in spectrum 20240927_SW-KF_S2_sup_Slot2-40_1_8061_diatracer.871931.871931.2 [INFO:] Please specify modification and rerun PTMProphet ... ​ [INFO:] processed 153000/189300 spectrum_queries [ERROR:] Cannot initialize for sequence: nLTDLASQM[147]AEMQLAc[61], unknown mods may exist in spectrum 20240927_SW-KF_S2_sup_Slot2-40_1_8061_diatracer.875944.875944.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nIYSHLHSSAIWNPYLHLMGTc[61], unknown mods may exist in spectrum 20240927_SW-KF_S2_sup_Slot2-40_1_8061_diatracer.878172.878172.3 [INFO:] Please specify modification and rerun PTMProphet ... ​ [INFO:] processed 154000/189300 spectrum_queries [ERROR:] Cannot initialize for sequence: nSRYM[147]ELYTYPPAc[61], unknown mods may exist in spectrum 20240927_SW-KF_S2_sup_Slot2-40_1_8061_diatracer.880354.880354.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nSRYM[147]ELYTYPPAc[61], unknown mods may exist in spectrum 20240927_SW-KF_S2_sup_Slot2-40_1_8061_diatracer.882282.882282.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nC[160]VIQLLQAEGAFWc[61], unknown mods may exist in spectrum 20240927_SW-KF_S2_sup_Slot2-40_1_8061_diatracer.883413.883413.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nGGSYSQAASSDSAQGSD[158]VSLTAC[160]c[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_sup_Slot2-40_1_8061_diatracer.884351.884351.3 [INFO:] Please specify modification and rerun PTMProphet ... ​ [INFO:] processed 155000/189300 spectrum_queries [ERROR:] Cannot initialize for sequence: nGARTTRSGAGGGLGAMAPDLQLEAc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_sup_Slot2-40_1_8061_diatracer.888568.888568.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nLADGQLQQAQIWGAc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_sup_Slot2-40_1_8061_diatracer.889509.889509.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nFTPTFYAGFLPGSLGEATAAPSQc[61], unknown mods may exist in spectrum 20240927_SW-KF_S2_sup_Slot2-40_1_8061_diatracer.889525.889525.3 [INFO:] Please specify modification and rerun PTMProphet ... ​ [INFO:] processed 156000/189300 spectrum_queries [ERROR:] Cannot initialize for sequence: nGEAQGSAASAAVAGTAAAc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_sup_Slot2-40_1_8061_diatracer.891742.891742.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nAGAQGVRIELINGAQLIRESGC[160]c[61], unknown mods may exist in spectrum 20240927_SW-KF_S2_sup_Slot2-40_1_8061_diatracer.892811.892811.3 [INFO:] Please specify modification and rerun PTMProphet ... ​ [INFO:] processed 157000/189300 spectrum_queries [ERROR:] Cannot initialize for sequence: nC[160]GVLITGLPGDQNC[160]LLNAIM[147]Tc[61], unknown mods may exist in spectrum 20240927_SW-KF_S2_sup_Slot2-40_1_8061_diatracer.897748.897748.3 [INFO:] Please specify modification and rerun PTMProphet ... ​ [INFO:] processed 158000/189300 spectrum_queries [ERROR:] Cannot initialize for sequence: nSRYM[147]ELYTYPPAc[61], unknown mods may exist in spectrum 20240927_SW-KF_S2_sup_Slot2-40_1_8061_diatracer.903473.903473.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nGAFADVTQVTSLWLAHNEVRTc[61], unknown mods may exist in spectrum 20240927_SW-KF_S2_sup_Slot2-40_1_8061_diatracer.904316.904316.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nQWQSELLQKYGLc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_sup_Slot2-40_1_8061_diatracer.904649.904649.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: n[43]DNAGVSFALIFAIIFGLIVM[147]WLYEDMAc[61], unknown mods may exist in spectrum 20240927_SW-KF_S2_sup_Slot2-40_1_8061_diatracer.905880.905880.4 [INFO:] Please specify modification and rerun PTMProphet ... ​ [INFO:] processed 159000/189300 spectrum_queries [ERROR:] Cannot initialize for sequence: nLSAHSSQSGTLANEMDEPLHNc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_sup_Slot2-40_1_8061_diatracer.907210.907210.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nEIQEAIAVANASTMHc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_sup_Slot2-40_1_8061_diatracer.912238.912238.3 [INFO:] Please specify modification and rerun PTMProphet ... ​ [INFO:] processed 160000/189300 spectrum_queries [ERROR:] Cannot initialize for sequence: nEVALVKDVRc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_sup_Slot2-40_1_8061_diatracer.912824.912824.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nVEQLGILDKc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_sup_Slot2-40_1_8061_diatracer.913928.913928.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nLSVISVEDPPc[61], unknown mods may exist in spectrum 20240927_SW-KF_S2_sup_Slot2-40_1_8061_diatracer.913980.913980.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nVTDTEYSEIKIHKc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_sup_Slot2-40_1_8061_diatracer.914083.914083.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nKDDENIPMETGNSPAc[61], unknown mods may exist in spectrum 20240927_SW-KF_S2_sup_Slot2-40_1_8061_diatracer.914212.914212.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nPNDFLSGDAAAc[61], unknown mods may exist in spectrum 20240927_SW-KF_S2_sup_Slot2-40_1_8061_diatracer.915120.915120.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nDLFLSTC[160]VTc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_sup_Slot2-40_1_8061_diatracer.916038.916038.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nTGAFAYPFLFDNLPc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_sup_Slot2-40_1_8061_diatracer.916657.916657.3 [INFO:] Please specify modification and rerun PTMProphet ... ​ [INFO:] processed 161000/189300 spectrum_queries [ERROR:] Cannot initialize for sequence: nVGAPAVSGSEM[147]QPSHLAc[61], unknown mods may exist in spectrum 20240927_SW-KF_S2_sup_Slot2-40_1_8061_diatracer.918023.918023.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nDLQAVLC[160]PPc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_sup_Slot2-40_1_8061_diatracer.918559.918559.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nNIPKM[147]LFSSLFGSLc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_sup_Slot2-40_1_8061_diatracer.919154.919154.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nGVASLC[160]QLDNc[61], unknown mods may exist in spectrum 20240927_SW-KF_S2_sup_Slot2-40_1_8061_diatracer.919754.919754.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nLDELEEATKc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_sup_Slot2-40_1_8061_diatracer.920331.920331.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nELNGSDDALGVc[61], unknown mods may exist in spectrum 20240927_SW-KF_S2_sup_Slot2-40_1_8061_diatracer.920465.920465.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nYSPTTSHVGAc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_sup_Slot2-40_1_8061_diatracer.921472.921472.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nPPMGMRPPVMSQALPc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_sup_Slot2-40_1_8061_diatracer.922511.922511.3 [INFO:] Please specify modification and rerun PTMProphet ... ​ [INFO:] processed 162000/189300 spectrum_queries [ERROR:] Cannot initialize for sequence: nANAQAAALYKc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_sup_Slot2-40_1_8061_diatracer.928541.928541.2 [INFO:] Please specify modification and rerun PTMProphet ... ​ [INFO:] processed 163000/189300 spectrum_queries [ERROR:] Cannot initialize for sequence: nEAATLEWSQGc[61], unknown mods may exist in spectrum 20240927_SW-KF_S2_sup_Slot2-40_1_8061_diatracer.930050.930050.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nLQGLEDGAGAGPAENAASc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_sup_Slot2-40_1_8061_diatracer.930221.930221.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nPQASVLPATPSc[61], unknown mods may exist in spectrum 20240927_SW-KF_S2_sup_Slot2-40_1_8061_diatracer.931314.931314.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nFATSRWDTEQGSVDc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_sup_Slot2-40_1_8061_diatracer.931906.931906.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nQIAELGSLSLLALVALAVSRSc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_sup_Slot2-40_1_8061_diatracer.932825.932825.4 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nANAQAAALYKc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_sup_Slot2-40_1_8061_diatracer.933602.933602.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nIEQKEELDDVIALDc[61], unknown mods may exist in spectrum 20240927_SW-KF_S2_sup_Slot2-40_1_8061_diatracer.933837.933837.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nFLSALGIAHGGQNPGDSc[61], unknown mods may exist in spectrum 20240927_SW-KF_S2_sup_Slot2-40_1_8061_diatracer.934005.934005.3 [INFO:] Please specify modification and rerun PTMProphet ... ​ [INFO:] processed 164000/189300 spectrum_queries [ERROR:] Cannot initialize for sequence: nYQTAGAQLC[160]c[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_sup_Slot2-40_1_8061_diatracer.935312.935312.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nFELGKLMELHGEGSSSGKATGc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_sup_Slot2-40_1_8061_diatracer.936099.936099.4 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nPIYINVIRDPIERc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_sup_Slot2-40_1_8061_diatracer.936642.936642.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nASAADC[160]LQHPWLNPc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_sup_Slot2-40_1_8061_diatracer.938278.938278.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nSLFGENLPELQIYAc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_sup_Slot2-40_1_8061_diatracer.938701.938701.3 [INFO:] Please specify modification and rerun PTMProphet ... ​ [INFO:] processed 165000/189300 spectrum_queries [ERROR:] Cannot initialize for sequence: nMELQTLQEAc[61], unknown mods may exist in spectrum 20240927_SW-KF_S2_sup_Slot2-40_1_8061_diatracer.942756.942756.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nC[160]YVLAEVKEFGGEEc[61], unknown mods may exist in spectrum 20240927_SW-KF_S2_sup_Slot2-40_1_8061_diatracer.945275.945275.3 [INFO:] Please specify modification and rerun PTMProphet ... ​ [INFO:] processed 166000/189300 spectrum_queries [ERROR:] Cannot initialize for sequence: n[43]MGIPGVKGQPc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_sup_Slot2-40_1_8061_diatracer.947718.947718.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nSAVAEAALAEAAc[61], unknown mods may exist in spectrum 20240927_SW-KF_S2_sup_Slot2-40_1_8061_diatracer.948173.948173.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nELNGSDDALGVc[61], unknown mods may exist in spectrum 20240927_SW-KF_S2_sup_Slot2-40_1_8061_diatracer.948821.948821.2 [INFO:] Please specify modification and rerun PTMProphet ... ​ [INFO:] processed 167000/189300 spectrum_queries [ERROR:] Cannot initialize for sequence: nPEHVSSSSSSSc[61], unknown mods may exist in spectrum 20240927_SW-KF_S2_sup_Slot2-40_1_8061_diatracer.953457.953457.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nHAGAPGRSPAQLQHFc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_sup_Slot2-40_1_8061_diatracer.954409.954409.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nHIQVHGYRFHLAMc[61], unknown mods may exist in spectrum 20240927_SW-KF_S2_sup_Slot2-40_1_8061_diatracer.956481.956481.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nNESIWIHLGGQMGPLGKSIDc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_sup_Slot2-40_1_8061_diatracer.957603.957603.4 [INFO:] Please specify modification and rerun PTMProphet ... ​ [INFO:] processed 168000/189300 spectrum_queries [ERROR:] Cannot initialize for sequence: nAQAAEDKQTEc[61], unknown mods may exist in spectrum 20240927_SW-KF_S2_sup_Slot2-40_1_8061_diatracer.958171.958171.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nMQDLKGAHRc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_sup_Slot2-40_1_8061_diatracer.958655.958655.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nTAGIAGWHGWc[61], unknown mods may exist in spectrum 20240927_SW-KF_S2_sup_Slot2-40_1_8061_diatracer.958774.958774.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nNLTVC[160]PDGALc[61], unknown mods may exist in spectrum 20240927_SW-KF_S2_sup_Slot2-40_1_8061_diatracer.959108.959108.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: n[43]MNVSVLSYFDSAGATc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_sup_Slot2-40_1_8061_diatracer.960141.960141.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nDGTLPLIITAQSSFVIFSLRc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_sup_Slot2-40_1_8061_diatracer.960684.960684.4 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nDLSDGSSGSGSAGc[61], unknown mods may exist in spectrum 20240927_SW-KF_S2_sup_Slot2-40_1_8061_diatracer.960874.960874.2 [INFO:] Please specify modification and rerun PTMProphet ... ​ [INFO:] processed 169000/189300 spectrum_queries [ERROR:] Cannot initialize for sequence: nAGPSPTPc[61], unknown mods may exist in spectrum 20240927_SW-KF_S2_sup_Slot2-40_1_8061_diatracer.963450.963450.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nWISWSDTAVSNVTESM[147]LAc[61], unknown mods may exist in spectrum 20240927_SW-KF_S2_sup_Slot2-40_1_8061_diatracer.964908.964908.2 [INFO:] Please specify modification and rerun PTMProphet ... ​ [INFO:] processed 170000/189300 spectrum_queries [ERROR:] Cannot initialize for sequence: nATFFFD[158]EADEELSSYGSSc[61], unknown mods may exist in spectrum 20240927_SW-KF_S2_sup_Slot2-40_1_8061_diatracer.974639.974639.2 [INFO:] Please specify modification and rerun PTMProphet ... ​ [INFO:] processed 172000/189300 spectrum_queries [ERROR:] Cannot initialize for sequence: nPKVSSTAHARHFTAc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_sup_Slot2-40_1_8061_diatracer.984829.984829.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nINEAFIEMATTEDAc[61], unknown mods may exist in spectrum 20240927_SW-KF_S2_sup_Slot2-40_1_8061_diatracer.986668.986668.2 [INFO:] Please specify modification and rerun PTMProphet ... ​ [INFO:] processed 173000/189300 spectrum_queries [ERROR:] Cannot initialize for sequence: nVPC[160]SGPWHQVC[160]GRc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_sup_Slot2-40_1_8061_diatracer.987783.987783.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nQTGGPTLQSLLLLVTLTLLLLKc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_sup_Slot2-40_1_8061_diatracer.989275.989275.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nPKVSSTAHARHFTAc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_sup_Slot2-40_1_8061_diatracer.992159.992159.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nQLEPSRISPFPMGPc[61], unknown mods may exist in spectrum 20240927_SW-KF_S2_sup_Slot2-40_1_8061_diatracer.992223.992223.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nNVVSGVLFGTGLWVAc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_sup_Slot2-40_1_8061_diatracer.992543.992543.2 [INFO:] Please specify modification and rerun PTMProphet ... ​ [INFO:] processed 174000/189300 spectrum_queries [ERROR:] Cannot initialize for sequence: nEANVPSVPALSEESVc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_sup_Slot2-40_1_8061_diatracer.993151.993151.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nFVTASILLC[160]FLLRC[160]SSAGKSEc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_sup_Slot2-40_1_8061_diatracer.995554.995554.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nC[160]SLIGYGGRAEAGVAAc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_sup_Slot2-40_1_8061_diatracer.997525.997525.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nATAGEPSPHGQVSSPPc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_sup_Slot2-40_1_8061_diatracer.997973.997973.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nIFVSGNSNEC[160]LQNSc[61], unknown mods may exist in spectrum 20240927_SW-KF_S2_sup_Slot2-40_1_8061_diatracer.998349.998349.2 [INFO:] Please specify modification and rerun PTMProphet ... ​ [INFO:] processed 175000/189300 spectrum_queries [ERROR:] Cannot initialize for sequence: nSPSAAGAAVLDALEEQGGLQSLFC[160]c[61], unknown mods may exist in spectrum 20240927_SW-KF_S2_sup_Slot2-40_1_8061_diatracer.998534.998534.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nLAATNALLNSLE[172]FTc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_sup_Slot2-40_1_8061_diatracer.999925.999925.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nAITIAGIPQSIIE[172]C[160]c[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_sup_Slot2-40_1_8061_diatracer.1003844.1003844.2 [INFO:] Please specify modification and rerun PTMProphet ... ​ [INFO:] processed 176000/189300 spectrum_queries [ERROR:] Cannot initialize for sequence: nEQGGGRSGGAGSGGGNLTc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_sup_Slot2-40_1_8061_diatracer.1005335.1005335.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nGTIRTPMAAAAFAEKc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_sup_Slot2-40_1_8061_diatracer.1005802.1005802.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nEDISALKLQNLAESTDDLTLDDQLESLPDc[61], unknown mods may exist in spectrum 20240927_SW-KF_S2_sup_Slot2-40_1_8061_diatracer.1005845.1005845.4 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nPKVSSTAHARHFTAc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_sup_Slot2-40_1_8061_diatracer.1006832.1006832.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nATAGEPSPHGQVSSPPc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_sup_Slot2-40_1_8061_diatracer.1008969.1008969.2 [INFO:] Please specify modification and rerun PTMProphet ... ​ [INFO:] processed 177000/189300 spectrum_queries [ERROR:] Cannot initialize for sequence: nAVTEGAQAVEEPSIC[160]c[61], unknown mods may exist in spectrum 20240927_SW-KF_S2_sup_Slot2-40_1_8061_diatracer.1010772.1010772.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nQTFTGHESDINAIC[160]c[61], unknown mods may exist in spectrum 20240927_SW-KF_S2_sup_Slot2-40_1_8061_diatracer.1011993.1011993.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nM[147]ADLPRELFPWEc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_sup_Slot2-40_1_8061_diatracer.1012613.1012613.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nSFYPEEVSSMVLTKMKEIAEc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_sup_Slot2-40_1_8061_diatracer.1012751.1012751.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nNNALAPPSDTMDMSLNQSQLDDc[61], unknown mods may exist in spectrum 20240927_SW-KF_S2_sup_Slot2-40_1_8061_diatracer.1012940.1012940.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nGPAAAAAAAAAAAEGGRELc[61], unknown mods may exist in spectrum 20240927_SW-KF_S2_sup_Slot2-40_1_8061_diatracer.1013974.1013974.2 [INFO:] Please specify modification and rerun PTMProphet ... ​ [INFO:] processed 178000/189300 spectrum_queries [ERROR:] Cannot initialize for sequence: nATAGEPSPHGQVSSPPc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_sup_Slot2-40_1_8061_diatracer.1019961.1019961.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nVEDESELEVFAEGSc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_sup_Slot2-40_1_8061_diatracer.1020762.1020762.2 [INFO:] Please specify modification and rerun PTMProphet ... ​ [INFO:] processed 179000/189300 spectrum_queries [ERROR:] Cannot initialize for sequence: nAVTEGAQAVEEPSIC[160]c[61], unknown mods may exist in spectrum 20240927_SW-KF_S2_sup_Slot2-40_1_8061_diatracer.1021766.1021766.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nEPATTLPTAQWSC[160]Lc[61], unknown mods may exist in spectrum 20240927_SW-KF_S2_sup_Slot2-40_1_8061_diatracer.1022415.1022415.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nC[160]VAHAAGC[160]WAc[61], unknown mods may exist in spectrum 20240927_SW-KF_S2_sup_Slot2-40_1_8061_diatracer.1023405.1023405.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nQRIHQQAETQGIVQc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_sup_Slot2-40_1_8061_diatracer.1023487.1023487.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nTTGIVMDSGDGVTHTVPc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_sup_Slot2-40_1_8061_diatracer.1025274.1025274.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nQHGVGGAFGC[160]Rc[61], unknown mods may exist in spectrum 20240927_SW-KF_S2_sup_Slot2-40_1_8061_diatracer.1025454.1025454.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nDEGPPTPSSATc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_sup_Slot2-40_1_8061_diatracer.1025789.1025789.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nLYWLLGFDSFFSEAc[61], unknown mods may exist in spectrum 20240927_SW-KF_S2_sup_Slot2-40_1_8061_diatracer.1026680.1026680.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nVKEMNTQAYc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_sup_Slot2-40_1_8061_diatracer.1026918.1026918.2 [INFO:] Please specify modification and rerun PTMProphet ... ​ [INFO:] processed 180000/189300 spectrum_queries [ERROR:] Cannot initialize for sequence: nLD[202]ENVHTDNc[61], unknown mods may exist in spectrum 20240927_SW-KF_S2_sup_Slot2-40_1_8061_diatracer.1030042.1030042.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nILAHLTGTEFc[61], unknown mods may exist in spectrum 20240927_SW-KF_S2_sup_Slot2-40_1_8061_diatracer.1030846.1030846.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nSELLMIIQMc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_sup_Slot2-40_1_8061_diatracer.1031678.1031678.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nTMEDVIAEQSVSGYFc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_sup_Slot2-40_1_8061_diatracer.1032275.1032275.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nMRFQEAAKEEAQNKc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_sup_Slot2-40_1_8061_diatracer.1032295.1032295.3 [INFO:] Please specify modification and rerun PTMProphet ... ​ [INFO:] processed 181000/189300 spectrum_queries [ERROR:] Cannot initialize for sequence: nTAVYPVAQAQGc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_sup_Slot2-40_1_8061_diatracer.1032888.1032888.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nLNLDM[147]ILSLFLNDIc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_sup_Slot2-40_1_8061_diatracer.1034103.1034103.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nNLVSLDGVFLc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_sup_Slot2-40_1_8061_diatracer.1034215.1034215.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nYLQLDAARLc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_sup_Slot2-40_1_8061_diatracer.1035829.1035829.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nEVDMWSTGVIM[147]YTLc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_sup_Slot2-40_1_8061_diatracer.1036376.1036376.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nRNQETQQDDc[61], unknown mods may exist in spectrum 20240927_SW-KF_S2_sup_Slot2-40_1_8061_diatracer.1037169.1037169.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nAYAPGGPAYQPVVEAFc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_sup_Slot2-40_1_8061_diatracer.1038338.1038338.3 [INFO:] Please specify modification and rerun PTMProphet ... ​ [INFO:] processed 182000/189300 spectrum_queries [ERROR:] Cannot initialize for sequence: nLDDLHTLYHKKSYc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_sup_Slot2-40_1_8061_diatracer.1040801.1040801.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nEGADTSLDWESYDNNISVQAc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_sup_Slot2-40_1_8061_diatracer.1043070.1043070.4 [INFO:] Please specify modification and rerun PTMProphet ... ​ [INFO:] processed 183000/189300 spectrum_queries [ERROR:] Cannot initialize for sequence: nISAAAAATAAAAAAc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_sup_Slot2-40_1_8061_diatracer.1045243.1045243.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nSGAGPGAAAAAAGPGc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_sup_Slot2-40_1_8061_diatracer.1046768.1046768.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nEM[147]AQGLVSGGAQLLGLLLM[147]GAAAAc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_sup_Slot2-40_1_8061_diatracer.1047176.1047176.4 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nLD[202]ENVHTDNc[61], unknown mods may exist in spectrum 20240927_SW-KF_S2_sup_Slot2-40_1_8061_diatracer.1047343.1047343.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nQFEVDEQPNLSLIPGAPGSFTAc[61], unknown mods may exist in spectrum 20240927_SW-KF_S2_sup_Slot2-40_1_8061_diatracer.1049609.1049609.4 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nKSLELAFQNISTALSDc[61], unknown mods may exist in spectrum 20240927_SW-KF_S2_sup_Slot2-40_1_8061_diatracer.1049784.1049784.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nLD[202]ENVHTDNc[61], unknown mods may exist in spectrum 20240927_SW-KF_S2_sup_Slot2-40_1_8061_diatracer.1049812.1049812.2 [INFO:] Please specify modification and rerun PTMProphet ... ​ [INFO:] processed 184000/189300 spectrum_queries [ERROR:] Cannot initialize for sequence: nEPAGVGAETGPVc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_sup_Slot2-40_1_8061_diatracer.1051565.1051565.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nKSLELAFQNISTALSDc[61], unknown mods may exist in spectrum 20240927_SW-KF_S2_sup_Slot2-40_1_8061_diatracer.1052246.1052246.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nKSDLPDGAGSSAc[61], unknown mods may exist in spectrum 20240927_SW-KF_S2_sup_Slot2-40_1_8061_diatracer.1052904.1052904.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nILAHLTGTEFc[61], unknown mods may exist in spectrum 20240927_SW-KF_S2_sup_Slot2-40_1_8061_diatracer.1053079.1053079.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nNLLDEAKGALDVFWSc[61], unknown mods may exist in spectrum 20240927_SW-KF_S2_sup_Slot2-40_1_8061_diatracer.1053096.1053096.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nPSIM[147]YATPVEc[61], unknown mods may exist in spectrum 20240927_SW-KF_S2_sup_Slot2-40_1_8061_diatracer.1054082.1054082.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nELVEEFPIEc[61], unknown mods may exist in spectrum 20240927_SW-KF_S2_sup_Slot2-40_1_8061_diatracer.1055472.1055472.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nLPGEMEKQKc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_sup_Slot2-40_1_8061_diatracer.1055680.1055680.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nFEELENTDDc[61], unknown mods may exist in spectrum 20240927_SW-KF_S2_sup_Slot2-40_1_8061_diatracer.1055752.1055752.2 [INFO:] Please specify modification and rerun PTMProphet ... ​ [INFO:] processed 185000/189300 spectrum_queries [ERROR:] Cannot initialize for sequence: nLGEHAIFQSPSMDVFc[61], unknown mods may exist in spectrum 20240927_SW-KF_S2_sup_Slot2-40_1_8061_diatracer.1058004.1058004.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nC[160]QFGAEIITAESYSLc[61], unknown mods may exist in spectrum 20240927_SW-KF_S2_sup_Slot2-40_1_8061_diatracer.1058438.1058438.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nKSLELAFQNISTALSDc[61], unknown mods may exist in spectrum 20240927_SW-KF_S2_sup_Slot2-40_1_8061_diatracer.1059667.1059667.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nIDRNQALLVPALASGIc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_sup_Slot2-40_1_8061_diatracer.1061014.1061014.3 [INFO:] Please specify modification and rerun PTMProphet ... ​ [INFO:] processed 186000/189300 spectrum_queries [ERROR:] Cannot initialize for sequence: nQGTSLGWGGAQc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_sup_Slot2-40_1_8061_diatracer.1063058.1063058.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nNMTIPEDILGEIAVSMc[61], unknown mods may exist in spectrum 20240927_SW-KF_S2_sup_Slot2-40_1_8061_diatracer.1064950.1064950.3 [INFO:] Please specify modification and rerun PTMProphet ... ​ [INFO:] processed 187000/189300 spectrum_queries [ERROR:] Cannot initialize for sequence: nFILALVEEPLGEGPEAc[61], unknown mods may exist in spectrum 20240927_SW-KF_S2_sup_Slot2-40_1_8061_diatracer.1067957.1067957.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: n[43]MYGAVNEYPc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_sup_Slot2-40_1_8061_diatracer.1068901.1068901.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nLPGEMEKQKc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_sup_Slot2-40_1_8061_diatracer.1070491.1070491.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nASNGQIGTQHSc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_sup_Slot2-40_1_8061_diatracer.1072075.1072075.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nTVGILPSNC[160]SDIWQVc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_sup_Slot2-40_1_8061_diatracer.1072297.1072297.3 [INFO:] Please specify modification and rerun PTMProphet ... ​ [INFO:] processed 188000/189300 spectrum_queries [ERROR:] Cannot initialize for sequence: nLNDPDASASDTRLFRc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_sup_Slot2-40_1_8061_diatracer.1074235.1074235.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nQVGAQGVSRSEM[147]MELSRPPGPc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_sup_Slot2-40_1_8061_diatracer.1075816.1075816.4 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nGEQILLSDNAASLAVQc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_sup_Slot2-40_1_8061_diatracer.1077924.1077924.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nENLELNGSILSGQPSSc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_sup_Slot2-40_1_8061_diatracer.1078226.1078226.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nGM[147]QAAREGSHSVTASALc[61], unknown mods may exist in spectrum 20240927_SW-KF_S2_sup_Slot2-40_1_8061_diatracer.1078260.1078260.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nPVGEQNFNSEc[61], unknown mods may exist in spectrum 20240927_SW-KF_S2_sup_Slot2-40_1_8061_diatracer.1078402.1078402.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nESLGLESKDGSc[61], unknown mods may exist in spectrum 20240927_SW-KF_S2_sup_Slot2-40_1_8061_diatracer.1078425.1078425.2 [INFO:] Please specify modification and rerun PTMProphet ... ​ [INFO:] processed 189000/189300 spectrum_queries [ERROR:] Cannot initialize for sequence: nENQLINIADDc[61], unknown mods may exist in spectrum 20240927_SW-KF_S2_sup_Slot2-40_1_8061_diatracer.1079709.1079709.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nC[160]RPNADLELNDVIGLc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_sup_Slot2-40_1_8061_diatracer.1079890.1079890.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nPEELLELLGGSHDLDSNQAAMVc[61], unknown mods may exist in spectrum 20240927_SW-KF_S2_sup_Slot2-40_1_8061_diatracer.1079970.1079970.4 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nMKLPGYLM[147]Gc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_sup_Slot2-40_1_8061_diatracer.1080830.1080830.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nRGLALNGc[61], unknown mods may exist in spectrum 20240927_SW-KF_S2_sup_Slot2-40_1_8061_diatracer.1080926.1080926.2 [INFO:] Please specify modification and rerun PTMProphet ... [INFO:] done ... [INFO:] Computing EM Models ... [INFO:] Iterating PTM Model: ....5....done [INFO:] done ... [INFO:] done ... [INFO:] Creating 1 threads [INFO:] Wait for threads to finish ... [INFO:] Reading file interact-20240927_SW-KF_S2_sup_Slot2-40_1_8061_diatracer.pep.xml ... [ERROR:] Cannot initialize for sequence: nWEEKSREFIGSFLEMFc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_sup_Slot2-40_1_8061_diatracer.01360.01360.2 [INFO:] Please specify modification and rerun PTMProphet ... ​ [INFO:] written 1000/189300 spectrum_queries [ERROR:] Cannot initialize for sequence: nM[147]QAQDAVSLC[160]FPGWSAM[147]Tc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_sup_Slot2-40_1_8061_diatracer.06533.06533.2 [INFO:] Please specify modification and rerun PTMProphet ... ​ [INFO:] written 2000/189300 spectrum_queries [ERROR:] Cannot initialize for sequence: nSC[160]PPWMAVPDSGRPVDPDSc[61], unknown mods may exist in spectrum 20240927_SW-KF_S2_sup_Slot2-40_1_8061_diatracer.12849.12849.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nNGEDDSMDLVENMTEPVNc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_sup_Slot2-40_1_8061_diatracer.13276.13276.2 [INFO:] Please specify modification and rerun PTMProphet ... ​ [INFO:] written 3000/189300 spectrum_queries [ERROR:] Cannot initialize for sequence: nM[147]GLALVM[147]HGFPPGSDDLFFIQKc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_sup_Slot2-40_1_8061_diatracer.17172.17172.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nQPPPAEAGAVNRTEAAc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_sup_Slot2-40_1_8061_diatracer.19485.19485.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nVSTEGPKSSVPPGPVEc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_sup_Slot2-40_1_8061_diatracer.20983.20983.2 [INFO:] Please specify modification and rerun PTMProphet ... ​ [INFO:] written 4000/189300 spectrum_queries [ERROR:] Cannot initialize for sequence: nQIEAGSAPALTE[172]PGQE[172]GSEPRVFc[61], unknown mods may exist in spectrum 20240927_SW-KF_S2_sup_Slot2-40_1_8061_diatracer.26267.26267.3 [INFO:] Please specify modification and rerun PTMProphet ... ​ [INFO:] written 5000/189300 spectrum_queries [ERROR:] Cannot initialize for sequence: nSPGGNVGQGQGLGDSPC[160]c[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_sup_Slot2-40_1_8061_diatracer.28333.28333.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nGGESIWLAAANESGGPEc[61], unknown mods may exist in spectrum 20240927_SW-KF_S2_sup_Slot2-40_1_8061_diatracer.30451.30451.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nEAPEYLDLDEIDFc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_sup_Slot2-40_1_8061_diatracer.32655.32655.2 [INFO:] Please specify modification and rerun PTMProphet ... ​ [INFO:] written 6000/189300 spectrum_queries [ERROR:] Cannot initialize for sequence: nGASDLGLM[147]VIHLSQFASINSSINGc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_sup_Slot2-40_1_8061_diatracer.33987.33987.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nM[147]IRPASELSAQTAAGAc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_sup_Slot2-40_1_8061_diatracer.35188.35188.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nEAPEYLDLDEIDFc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_sup_Slot2-40_1_8061_diatracer.36019.36019.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nFVDELTQTFNSLTSc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_sup_Slot2-40_1_8061_diatracer.37336.37336.2 [INFO:] Please specify modification and rerun PTMProphet ... ​ [INFO:] written 7000/189300 spectrum_queries [ERROR:] Cannot initialize for sequence: nFQDSNLAPAC[160]FPGTGRGLM[147]SQTSc[61], unknown mods may exist in spectrum 20240927_SW-KF_S2_sup_Slot2-40_1_8061_diatracer.43285.43285.3 [INFO:] Please specify modification and rerun PTMProphet ... ​ [INFO:] written 8000/189300 spectrum_queries [ERROR:] Cannot initialize for sequence: nAVTEGAQAVEEPSIC[160]c[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_sup_Slot2-40_1_8061_diatracer.44189.44189.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nLLE[172]AVGSSSGTPNAPPPc[61], unknown mods may exist in spectrum 20240927_SW-KF_S2_sup_Slot2-40_1_8061_diatracer.45356.45356.2 [INFO:] Please specify modification and rerun PTMProphet ... ​ [INFO:] written 9000/189300 spectrum_queries [ERROR:] Cannot initialize for sequence: nWRISLWNPLKSGDVPc[61], unknown mods may exist in spectrum 20240927_SW-KF_S2_sup_Slot2-40_1_8061_diatracer.53172.53172.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nSNFELLEKEVGLDLFc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_sup_Slot2-40_1_8061_diatracer.54321.54321.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nFHEILC[160]SFPLIPQEAc[61], unknown mods may exist in spectrum 20240927_SW-KF_S2_sup_Slot2-40_1_8061_diatracer.54374.54374.3 [INFO:] Please specify modification and rerun PTMProphet ... ​ [INFO:] written 10000/189300 spectrum_queries [ERROR:] Cannot initialize for sequence: nAGAAGAEAPTQESc[61], unknown mods may exist in spectrum 20240927_SW-KF_S2_sup_Slot2-40_1_8061_diatracer.55521.55521.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nPREQNGAIYLPTPDRc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_sup_Slot2-40_1_8061_diatracer.56167.56167.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nDFLFPSPTGKc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_sup_Slot2-40_1_8061_diatracer.57989.57989.2 [INFO:] Please specify modification and rerun PTMProphet ... ​ [INFO:] written 11000/189300 spectrum_queries [ERROR:] Cannot initialize for sequence: nRHETIAKPPGc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_sup_Slot2-40_1_8061_diatracer.60500.60500.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nTLAGDPSSPGPVSc[61], unknown mods may exist in spectrum 20240927_SW-KF_S2_sup_Slot2-40_1_8061_diatracer.61800.61800.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nSGPSTNTQSGLFNTPPPTc[61], unknown mods may exist in spectrum 20240927_SW-KF_S2_sup_Slot2-40_1_8061_diatracer.61906.61906.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nADHPPAEVTSHc[61], unknown mods may exist in spectrum 20240927_SW-KF_S2_sup_Slot2-40_1_8061_diatracer.63205.63205.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nDLSNLHLPGSNHSSASASc[61], unknown mods may exist in spectrum 20240927_SW-KF_S2_sup_Slot2-40_1_8061_diatracer.64571.64571.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nYPKEGAHIGTHQTLHSc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_sup_Slot2-40_1_8061_diatracer.65154.65154.3 [INFO:] Please specify modification and rerun PTMProphet ... ​ [INFO:] written 12000/189300 spectrum_queries [ERROR:] Cannot initialize for sequence: nGPSGNREGPQYc[61], unknown mods may exist in spectrum 20240927_SW-KF_S2_sup_Slot2-40_1_8061_diatracer.65684.65684.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nGSDGLNPWSEKPTREAc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_sup_Slot2-40_1_8061_diatracer.66563.66563.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nKVGVAVETVIGDc[61], unknown mods may exist in spectrum 20240927_SW-KF_S2_sup_Slot2-40_1_8061_diatracer.67487.67487.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nC[160]FWPC[160]WALTSQVSNGc[61], unknown mods may exist in spectrum 20240927_SW-KF_S2_sup_Slot2-40_1_8061_diatracer.69988.69988.3 [INFO:] Please specify modification and rerun PTMProphet ... ​ [INFO:] written 13000/189300 spectrum_queries [ERROR:] Cannot initialize for sequence: nGSDGLNPWSEKPTREAc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_sup_Slot2-40_1_8061_diatracer.71643.71643.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nAGNRNPTSMPSALWRPc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_sup_Slot2-40_1_8061_diatracer.72182.72182.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nVADEVVLPRQc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_sup_Slot2-40_1_8061_diatracer.73990.73990.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nINGTVILMYLc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_sup_Slot2-40_1_8061_diatracer.74121.74121.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nLAGGSADTVRSPc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_sup_Slot2-40_1_8061_diatracer.74251.74251.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nIEEEALSQPHc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_sup_Slot2-40_1_8061_diatracer.75146.75146.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nGGGGASSTC[160]GSGGAAc[61], unknown mods may exist in spectrum 20240927_SW-KF_S2_sup_Slot2-40_1_8061_diatracer.75402.75402.2 [INFO:] Please specify modification and rerun PTMProphet ... ​ [INFO:] written 14000/189300 spectrum_queries [ERROR:] Cannot initialize for sequence: nQAEVLKADMTDSKLGPAc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_sup_Slot2-40_1_8061_diatracer.77751.77751.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nVADEVVLPRQc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_sup_Slot2-40_1_8061_diatracer.79063.79063.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nHSLATQNQRSc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_sup_Slot2-40_1_8061_diatracer.79525.79525.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nDKPIAVGSM[147]SMLSTSNYc[61], unknown mods may exist in spectrum 20240927_SW-KF_S2_sup_Slot2-40_1_8061_diatracer.80329.80329.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nLQASAPNLTPIc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_sup_Slot2-40_1_8061_diatracer.81573.81573.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nVADEVVLPRQc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_sup_Slot2-40_1_8061_diatracer.81591.81591.2 [INFO:] Please specify modification and rerun PTMProphet ... ​ [INFO:] written 15000/189300 spectrum_queries [ERROR:] Cannot initialize for sequence: nLPDLEKTGHKc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_sup_Slot2-40_1_8061_diatracer.82214.82214.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nIEEEALSQPHc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_sup_Slot2-40_1_8061_diatracer.85320.85320.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nEDPLGEAQPQIc[61], unknown mods may exist in spectrum 20240927_SW-KF_S2_sup_Slot2-40_1_8061_diatracer.85470.85470.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nIQDGSFLELTc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_sup_Slot2-40_1_8061_diatracer.86640.86640.2 [INFO:] Please specify modification and rerun PTMProphet ... ​ [INFO:] written 16000/189300 spectrum_queries [ERROR:] Cannot initialize for sequence: nFSSPSSRSPETc[61], unknown mods may exist in spectrum 20240927_SW-KF_S2_sup_Slot2-40_1_8061_diatracer.87283.87283.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nKWLSLTEEPPGGAAELAc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_sup_Slot2-40_1_8061_diatracer.87689.87689.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nFLYTVPNGNNPTGNSLTc[61], unknown mods may exist in spectrum 20240927_SW-KF_S2_sup_Slot2-40_1_8061_diatracer.87835.87835.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nVEASLGYSPGKNFQTSSc[61], unknown mods may exist in spectrum 20240927_SW-KF_S2_sup_Slot2-40_1_8061_diatracer.89186.89186.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nVESGGGSGPYPAAc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_sup_Slot2-40_1_8061_diatracer.90031.90031.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nGGGLQC[160]SGGGFGGGYSASSSQLRLSc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_sup_Slot2-40_1_8061_diatracer.91984.91984.4 [INFO:] Please specify modification and rerun PTMProphet ... ​ [INFO:] written 17000/189300 spectrum_queries [ERROR:] Cannot initialize for sequence: nFHHPAQGLC[160]Pc[61], unknown mods may exist in spectrum 20240927_SW-KF_S2_sup_Slot2-40_1_8061_diatracer.93657.93657.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nDGTENAFLLHVAQGSGLc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_sup_Slot2-40_1_8061_diatracer.94042.94042.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nELAEDDSILKc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_sup_Slot2-40_1_8061_diatracer.94731.94731.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nAGC[160]PVANGVAAAAAc[61], unknown mods may exist in spectrum 20240927_SW-KF_S2_sup_Slot2-40_1_8061_diatracer.95643.95643.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nPQITAQRC[160]INEAQKVc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_sup_Slot2-40_1_8061_diatracer.97630.97630.3 [INFO:] Please specify modification and rerun PTMProphet ... ​ [INFO:] written 18000/189300 spectrum_queries [ERROR:] Cannot initialize for sequence: nNFIQLC[160]LEELC[160]LVSc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_sup_Slot2-40_1_8061_diatracer.99625.99625.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nPLDGEYFTLQc[61], unknown mods may exist in spectrum 20240927_SW-KF_S2_sup_Slot2-40_1_8061_diatracer.99833.99833.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nSDNGNATVVMSSc[61], unknown mods may exist in spectrum 20240927_SW-KF_S2_sup_Slot2-40_1_8061_diatracer.100095.100095.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nM[147]NSSPAGTPSPQc[61], unknown mods may exist in spectrum 20240927_SW-KF_S2_sup_Slot2-40_1_8061_diatracer.100283.100283.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nMTDPASWEGGFSNTYNc[61], unknown mods may exist in spectrum 20240927_SW-KF_S2_sup_Slot2-40_1_8061_diatracer.101677.101677.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nVADEVVLPRQc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_sup_Slot2-40_1_8061_diatracer.101928.101928.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nTQAASFPPPPVc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_sup_Slot2-40_1_8061_diatracer.103588.103588.2 [INFO:] Please specify modification and rerun PTMProphet ... ​ [INFO:] written 19000/189300 spectrum_queries [ERROR:] Cannot initialize for sequence: nLQASAPNLTPIc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_sup_Slot2-40_1_8061_diatracer.109495.109495.2 [INFO:] Please specify modification and rerun PTMProphet ... ​ [INFO:] written 20000/189300 spectrum_queries [ERROR:] Cannot initialize for sequence: nDQPGVSVc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_sup_Slot2-40_1_8061_diatracer.111936.111936.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nELENAKNM[147]Lc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_sup_Slot2-40_1_8061_diatracer.112965.112965.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nELALISFLNLc[61], unknown mods may exist in spectrum 20240927_SW-KF_S2_sup_Slot2-40_1_8061_diatracer.112986.112986.3 [INFO:] Please specify modification and rerun PTMProphet ... ​ [INFO:] written 21000/189300 spectrum_queries [ERROR:] Cannot initialize for sequence: nEGGAIFEVLGGSSSSGLLGHWc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_sup_Slot2-40_1_8061_diatracer.116118.116118.2 [INFO:] Please specify modification and rerun PTMProphet ... ​ [INFO:] written 22000/189300 spectrum_queries [ERROR:] Cannot initialize for sequence: nPQSAAPDRVVGPGSAPGATGAGAAc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_sup_Slot2-40_1_8061_diatracer.124583.124583.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nVQPSPGSVGTHQLASGGHHIEc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_sup_Slot2-40_1_8061_diatracer.125539.125539.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nTEIVELEGAPSPEFPPWDKc[61], unknown mods may exist in spectrum 20240927_SW-KF_S2_sup_Slot2-40_1_8061_diatracer.126610.126610.2 [INFO:] Please specify modification and rerun PTMProphet ... ​ [INFO:] written 23000/189300 spectrum_queries [ERROR:] Cannot initialize for sequence: nGGSPSLFDTDDEDGAGFc[61], unknown mods may exist in spectrum 20240927_SW-KF_S2_sup_Slot2-40_1_8061_diatracer.127794.127794.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nPPSQVPHPQAPAC[160]PVAc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_sup_Slot2-40_1_8061_diatracer.128229.128229.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nTEPAPAAAAGLGPDGAGGGAc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_sup_Slot2-40_1_8061_diatracer.131562.131562.2 [INFO:] Please specify modification and rerun PTMProphet ... ​ [INFO:] written 24000/189300 spectrum_queries [ERROR:] Cannot initialize for sequence: nAVLIDEVC[160]TMND[158]GPHSALYTMMc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_sup_Slot2-40_1_8061_diatracer.134414.134414.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nSFSAISESSADNTLFSc[61], unknown mods may exist in spectrum 20240927_SW-KF_S2_sup_Slot2-40_1_8061_diatracer.135058.135058.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nASDLLAWEQIFEVAVDEFTVSEc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_sup_Slot2-40_1_8061_diatracer.137326.137326.3 [INFO:] Please specify modification and rerun PTMProphet ... ​ [INFO:] written 25000/189300 spectrum_queries [ERROR:] Cannot initialize for sequence: nTVENVTVFGTASASKHc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_sup_Slot2-40_1_8061_diatracer.139189.139189.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nEEATLDSPVYSDDEEc[61], unknown mods may exist in spectrum 20240927_SW-KF_S2_sup_Slot2-40_1_8061_diatracer.139323.139323.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nNELISVKMAEAGSELEGVSLVTGGSc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_sup_Slot2-40_1_8061_diatracer.141662.141662.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nLQYPSNQAGPGSEEAVc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_sup_Slot2-40_1_8061_diatracer.143880.143880.2 [INFO:] Please specify modification and rerun PTMProphet ... ​ [INFO:] written 26000/189300 spectrum_queries [ERROR:] Cannot initialize for sequence: nALLANQDSGEVQQGGPAc[61], unknown mods may exist in spectrum 20240927_SW-KF_S2_sup_Slot2-40_1_8061_diatracer.145791.145791.2 [INFO:] Please specify modification and rerun PTMProphet ... ​ [INFO:] written 27000/189300 spectrum_queries [ERROR:] Cannot initialize for sequence: n[43]SVGVSTSAPLSPTSGTSVGM[147]STFSIMc[61], unknown mods may exist in spectrum 20240927_SW-KF_S2_sup_Slot2-40_1_8061_diatracer.151722.151722.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nIFTAVLNRC[160]M[147]LSALc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_sup_Slot2-40_1_8061_diatracer.152776.152776.2 [INFO:] Please specify modification and rerun PTMProphet ... ​ [INFO:] written 28000/189300 spectrum_queries [ERROR:] Cannot initialize for sequence: nAEEAQKTESVDNEGEc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_sup_Slot2-40_1_8061_diatracer.156299.156299.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nEAAPSPHQPSAQPLPPc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_sup_Slot2-40_1_8061_diatracer.159190.159190.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nDVLWDLLKSTQIDIPVHQHDEc[61], unknown mods may exist in spectrum 20240927_SW-KF_S2_sup_Slot2-40_1_8061_diatracer.160274.160274.3 [INFO:] Please specify modification and rerun PTMProphet ... ​ [INFO:] written 29000/189300 spectrum_queries [ERROR:] Cannot initialize for sequence: nGGSPSLFDTDDEDGAGFc[61], unknown mods may exist in spectrum 20240927_SW-KF_S2_sup_Slot2-40_1_8061_diatracer.162807.162807.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nTLAGTSTSGHFLHGPLSc[61], unknown mods may exist in spectrum 20240927_SW-KF_S2_sup_Slot2-40_1_8061_diatracer.162852.162852.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nNVSTSSTAAALM[147]GGTALC[160]Tc[61], unknown mods may exist in spectrum 20240927_SW-KF_S2_sup_Slot2-40_1_8061_diatracer.165828.165828.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nLLATLE[172]E[172]VDNc[61], unknown mods may exist in spectrum 20240927_SW-KF_S2_sup_Slot2-40_1_8061_diatracer.165882.165882.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nYQTWIKSNLVPPHTNc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_sup_Slot2-40_1_8061_diatracer.166234.166234.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nQLNHEYMLKc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_sup_Slot2-40_1_8061_diatracer.166517.166517.2 [INFO:] Please specify modification and rerun PTMProphet ... ​ [INFO:] written 30000/189300 spectrum_queries [ERROR:] Cannot initialize for sequence: nILDDSFIEGMEMEGHVc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_sup_Slot2-40_1_8061_diatracer.169848.169848.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nDWIAAC[160]QLHGGLELEEc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_sup_Slot2-40_1_8061_diatracer.170119.170119.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nLLATLE[172]E[172]VDNc[61], unknown mods may exist in spectrum 20240927_SW-KF_S2_sup_Slot2-40_1_8061_diatracer.170762.170762.2 [INFO:] Please specify modification and rerun PTMProphet ... ​ [INFO:] written 31000/189300 spectrum_queries [ERROR:] Cannot initialize for sequence: nPGLGLPPGAPPLVc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_sup_Slot2-40_1_8061_diatracer.171973.171973.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nVEEGSSAGKQNPQAEVHAc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_sup_Slot2-40_1_8061_diatracer.172614.172614.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nLLATLE[172]E[172]VDNc[61], unknown mods may exist in spectrum 20240927_SW-KF_S2_sup_Slot2-40_1_8061_diatracer.175648.175648.2 [INFO:] Please specify modification and rerun PTMProphet ... ​ [INFO:] written 32000/189300 spectrum_queries [ERROR:] Cannot initialize for sequence: nTQPFHKYMSTc[61], unknown mods may exist in spectrum 20240927_SW-KF_S2_sup_Slot2-40_1_8061_diatracer.177515.177515.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nDGDAIPLPESSGc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_sup_Slot2-40_1_8061_diatracer.178131.178131.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nSASASASASSPAAAGAAAEAGC[160]c[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_sup_Slot2-40_1_8061_diatracer.179601.179601.3 [INFO:] Please specify modification and rerun PTMProphet ... ​ [INFO:] written 33000/189300 spectrum_queries [ERROR:] Cannot initialize for sequence: nVAPYAIESIYVKGLSC[160]Tc[61], unknown mods may exist in spectrum 20240927_SW-KF_S2_sup_Slot2-40_1_8061_diatracer.182145.182145.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nDQQFKC[160]TGSMc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_sup_Slot2-40_1_8061_diatracer.182548.182548.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nSGGRVVLTQGC[160]LALGVSGAc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_sup_Slot2-40_1_8061_diatracer.183730.183730.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nGARVTHLADEWGFDTVTc[61], unknown mods may exist in spectrum 20240927_SW-KF_S2_sup_Slot2-40_1_8061_diatracer.184420.184420.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nSVLVPTDYKLLSDAPPIc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_sup_Slot2-40_1_8061_diatracer.184532.184532.3 [INFO:] Please specify modification and rerun PTMProphet ... ​ [INFO:] written 34000/189300 spectrum_queries [ERROR:] Cannot initialize for sequence: nPIGEEEVTSPPEGTVSVTc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_sup_Slot2-40_1_8061_diatracer.186761.186761.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nISGPC[160]IVC[160]SC[160]IAGVDFEc[61], unknown mods may exist in spectrum 20240927_SW-KF_S2_sup_Slot2-40_1_8061_diatracer.187292.187292.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nFEEPLLQEIPGEFIYc[61], unknown mods may exist in spectrum 20240927_SW-KF_S2_sup_Slot2-40_1_8061_diatracer.190483.190483.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nPEVPM[147]HTLHPc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_sup_Slot2-40_1_8061_diatracer.191078.191078.2 [INFO:] Please specify modification and rerun PTMProphet ... ​ [INFO:] written 35000/189300 spectrum_queries [ERROR:] Cannot initialize for sequence: nGM[147]TTVDDFFQGc[61], unknown mods may exist in spectrum 20240927_SW-KF_S2_sup_Slot2-40_1_8061_diatracer.191707.191707.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nNIISLLNVFTPc[61], unknown mods may exist in spectrum 20240927_SW-KF_S2_sup_Slot2-40_1_8061_diatracer.191900.191900.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nDAPMQAGVPWLLLTPSGSc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_sup_Slot2-40_1_8061_diatracer.192197.192197.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nEPPEVHTNSYc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_sup_Slot2-40_1_8061_diatracer.195921.195921.2 [INFO:] Please specify modification and rerun PTMProphet ... ​ [INFO:] written 36000/189300 spectrum_queries [ERROR:] Cannot initialize for sequence: nAALAPLLALC[160]LLPALLPPc[61], unknown mods may exist in spectrum 20240927_SW-KF_S2_sup_Slot2-40_1_8061_diatracer.197742.197742.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nEVQVLSQSM[147]PLTPHQAVPSGERc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_sup_Slot2-40_1_8061_diatracer.197795.197795.4 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nC[160]GVSLDPIQEGc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_sup_Slot2-40_1_8061_diatracer.198471.198471.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nSEVPEESAQKNTFVSYc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_sup_Slot2-40_1_8061_diatracer.198830.198830.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nLVERAQRLDQELLQAc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_sup_Slot2-40_1_8061_diatracer.200239.200239.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nC[160]STSVIYGATSAc[61], unknown mods may exist in spectrum 20240927_SW-KF_S2_sup_Slot2-40_1_8061_diatracer.200655.200655.2 [INFO:] Please specify modification and rerun PTMProphet ... ​ [INFO:] written 37000/189300 spectrum_queries [ERROR:] Cannot initialize for sequence: nFAIQDISVEETSAKEGLc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_sup_Slot2-40_1_8061_diatracer.201926.201926.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nDLHNTNIEPMc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_sup_Slot2-40_1_8061_diatracer.203622.203622.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nDFSQLALDPSGNQLIVGAc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_sup_Slot2-40_1_8061_diatracer.204695.204695.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nEVSTLEFGLSAQSVQVEc[61], unknown mods may exist in spectrum 20240927_SW-KF_S2_sup_Slot2-40_1_8061_diatracer.204819.204819.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nFDLLLVDPNDc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_sup_Slot2-40_1_8061_diatracer.205107.205107.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nPSLSQVM[147]LFHVLLMQLc[61], unknown mods may exist in spectrum 20240927_SW-KF_S2_sup_Slot2-40_1_8061_diatracer.206588.206588.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nC[160]TPEGTLSYGLc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_sup_Slot2-40_1_8061_diatracer.206717.206717.2 [INFO:] Please specify modification and rerun PTMProphet ... ​ [INFO:] written 38000/189300 spectrum_queries [ERROR:] Cannot initialize for sequence: nLTVTFVMVTFc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_sup_Slot2-40_1_8061_diatracer.207471.207471.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nLQGAQGAPDASRc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_sup_Slot2-40_1_8061_diatracer.207698.207698.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nQGAPGRWGSSNGc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_sup_Slot2-40_1_8061_diatracer.208052.208052.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nIEAC[160]D[158]GMAAGPGSGGEAGGAAc[61], unknown mods may exist in spectrum 20240927_SW-KF_S2_sup_Slot2-40_1_8061_diatracer.208146.208146.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nLQGAQGAPDASRc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_sup_Slot2-40_1_8061_diatracer.210127.210127.2 [INFO:] Please specify modification and rerun PTMProphet ... ​ [INFO:] written 39000/189300 spectrum_queries [ERROR:] Cannot initialize for sequence: nDLVPTGVLVTNGTAQIHGTc[61], unknown mods may exist in spectrum 20240927_SW-KF_S2_sup_Slot2-40_1_8061_diatracer.211957.211957.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nIDAAEGPSDIPDc[61], unknown mods may exist in spectrum 20240927_SW-KF_S2_sup_Slot2-40_1_8061_diatracer.212242.212242.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nPSTPSGLMMPESGLAPGQPEVAFAAc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_sup_Slot2-40_1_8061_diatracer.213036.213036.4 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nTFPARHGGSHLc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_sup_Slot2-40_1_8061_diatracer.213436.213436.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nDLMQQLAQDPc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_sup_Slot2-40_1_8061_diatracer.214541.214541.2 [INFO:] Please specify modification and rerun PTMProphet ... ​ [INFO:] written 40000/189300 spectrum_queries [ERROR:] Cannot initialize for sequence: nVEQAAAAASPSPSSFGTPFc[61], unknown mods may exist in spectrum 20240927_SW-KF_S2_sup_Slot2-40_1_8061_diatracer.217204.217204.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nAELEGVAVTAPRc[61], unknown mods may exist in spectrum 20240927_SW-KF_S2_sup_Slot2-40_1_8061_diatracer.217503.217503.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nSEVPEESAQKNTFVSYc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_sup_Slot2-40_1_8061_diatracer.218361.218361.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nWFVPGAAAAAAVAc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_sup_Slot2-40_1_8061_diatracer.219190.219190.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nDPSPVSGEc[61], unknown mods may exist in spectrum 20240927_SW-KF_S2_sup_Slot2-40_1_8061_diatracer.220632.220632.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nPLSIALAQRHc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_sup_Slot2-40_1_8061_diatracer.221189.221189.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nPRGVSQAPLLLc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_sup_Slot2-40_1_8061_diatracer.221398.221398.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nELIPSLC[160]LPEc[61], unknown mods may exist in spectrum 20240927_SW-KF_S2_sup_Slot2-40_1_8061_diatracer.222168.222168.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nGTPGTQSHc[61], unknown mods may exist in spectrum 20240927_SW-KF_S2_sup_Slot2-40_1_8061_diatracer.223139.223139.2 [INFO:] Please specify modification and rerun PTMProphet ... ​ [INFO:] written 41000/189300 spectrum_queries [ERROR:] Cannot initialize for sequence: nAMPFAGVVc[61], unknown mods may exist in spectrum 20240927_SW-KF_S2_sup_Slot2-40_1_8061_diatracer.223652.223652.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nSGAQGEEPc[61], unknown mods may exist in spectrum 20240927_SW-KF_S2_sup_Slot2-40_1_8061_diatracer.223941.223941.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nGGADSVVFc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_sup_Slot2-40_1_8061_diatracer.224090.224090.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nPGSPSATPAPGGGADDPVc[61], unknown mods may exist in spectrum 20240927_SW-KF_S2_sup_Slot2-40_1_8061_diatracer.225076.225076.4 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nEKPRVLPPSLc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_sup_Slot2-40_1_8061_diatracer.225617.225617.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nAAPGELRc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_sup_Slot2-40_1_8061_diatracer.227292.227292.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nRESQTALVANQc[61], unknown mods may exist in spectrum 20240927_SW-KF_S2_sup_Slot2-40_1_8061_diatracer.229354.229354.3 [INFO:] Please specify modification and rerun PTMProphet ... ​ [INFO:] written 42000/189300 spectrum_queries [ERROR:] Cannot initialize for sequence: nIYLTADNLVLNLQD[202]ESFTc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_sup_Slot2-40_1_8061_diatracer.234313.234313.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nSDTVADIESEPVVESTETEGTc[61], unknown mods may exist in spectrum 20240927_SW-KF_S2_sup_Slot2-40_1_8061_diatracer.235883.235883.2 [INFO:] Please specify modification and rerun PTMProphet ... ​ [INFO:] written 43000/189300 spectrum_queries [ERROR:] Cannot initialize for sequence: nIYLTADNLVLNLQD[202]ESFTc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_sup_Slot2-40_1_8061_diatracer.238023.238023.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nLAQQQAALLMQQE[216]Ec[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_sup_Slot2-40_1_8061_diatracer.239807.239807.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nFGADLLATDYQGNTALc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_sup_Slot2-40_1_8061_diatracer.240742.240742.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nTGLGEDGAGLFFHATTSEGESATLSWc[61], unknown mods may exist in spectrum 20240927_SW-KF_S2_sup_Slot2-40_1_8061_diatracer.241860.241860.3 [INFO:] Please specify modification and rerun PTMProphet ... ​ [INFO:] written 44000/189300 spectrum_queries [ERROR:] Cannot initialize for sequence: nETLQELTSHC[160]DDMEc[61], unknown mods may exist in spectrum 20240927_SW-KF_S2_sup_Slot2-40_1_8061_diatracer.243740.243740.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nSC[160]SQMSLNGETLSYFc[61], unknown mods may exist in spectrum 20240927_SW-KF_S2_sup_Slot2-40_1_8061_diatracer.244125.244125.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nGTPSPDTAGAASEAGRELc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_sup_Slot2-40_1_8061_diatracer.244308.244308.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nELLSTITDPSVIVMADc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_sup_Slot2-40_1_8061_diatracer.244809.244809.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nAFWYGQLSGMVEPLAc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_sup_Slot2-40_1_8061_diatracer.245312.245312.2 [INFO:] Please specify modification and rerun PTMProphet ... ​ [INFO:] written 45000/189300 spectrum_queries [ERROR:] Cannot initialize for sequence: nPFVALGSGEESPLEGWc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_sup_Slot2-40_1_8061_diatracer.248442.248442.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nQAEADAGVRWWQSMIc[61], unknown mods may exist in spectrum 20240927_SW-KF_S2_sup_Slot2-40_1_8061_diatracer.249378.249378.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nQID[158]LSSAD[158]AAQEHEEDHTSTPNPc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_sup_Slot2-40_1_8061_diatracer.253395.253395.3 [INFO:] Please specify modification and rerun PTMProphet ... ​ [INFO:] written 46000/189300 spectrum_queries [ERROR:] Cannot initialize for sequence: nEKFTNENVYFEVQVc[61], unknown mods may exist in spectrum 20240927_SW-KF_S2_sup_Slot2-40_1_8061_diatracer.255391.255391.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nLGSAIFSSGDDLGEDDEDAPM[147]ITGFSDDVPMVIAc[61], unknown mods may exist in spectrum 20240927_SW-KF_S2_sup_Slot2-40_1_8061_diatracer.257777.257777.4 [INFO:] Please specify modification and rerun PTMProphet ... ​ [INFO:] written 48000/189300 spectrum_queries [ERROR:] Cannot initialize for sequence: nTQPQGEEVLSAQEPAPc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_sup_Slot2-40_1_8061_diatracer.268193.268193.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nLNDILEDNDEGASVAGGc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_sup_Slot2-40_1_8061_diatracer.269948.269948.2 [INFO:] Please specify modification and rerun PTMProphet ... ​ [INFO:] written 49000/189300 spectrum_queries [ERROR:] Cannot initialize for sequence: nEGITAIGGTSTISSEGTQHSc[61], unknown mods may exist in spectrum 20240927_SW-KF_S2_sup_Slot2-40_1_8061_diatracer.274828.274828.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nFSPLMTAAGMISc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_sup_Slot2-40_1_8061_diatracer.276841.276841.2 [INFO:] Please specify modification and rerun PTMProphet ... ​ [INFO:] written 50000/189300 spectrum_queries [ERROR:] Cannot initialize for sequence: nLC[160]SAPLGALGKC[160]c[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_sup_Slot2-40_1_8061_diatracer.278182.278182.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nLTGALTSQAQAILSPQSPKc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_sup_Slot2-40_1_8061_diatracer.278200.278200.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nYYKSALVQIYELEEHc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_sup_Slot2-40_1_8061_diatracer.279375.279375.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nWDSNVIETFDc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_sup_Slot2-40_1_8061_diatracer.279460.279460.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nAEGLM[147]LEKEVGALLLLVMc[61], unknown mods may exist in spectrum 20240927_SW-KF_S2_sup_Slot2-40_1_8061_diatracer.280261.280261.3 [INFO:] Please specify modification and rerun PTMProphet ... ​ [INFO:] written 51000/189300 spectrum_queries [ERROR:] Cannot initialize for sequence: nQIC[160]TPQNSSASDNIEEQc[61], unknown mods may exist in spectrum 20240927_SW-KF_S2_sup_Slot2-40_1_8061_diatracer.284397.284397.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nAVGRGLQPKASRc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_sup_Slot2-40_1_8061_diatracer.285105.285105.2 [INFO:] Please specify modification and rerun PTMProphet ... ​ [INFO:] written 52000/189300 spectrum_queries [ERROR:] Cannot initialize for sequence: nGVLGSDALNLQEc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_sup_Slot2-40_1_8061_diatracer.289041.289041.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nPEISLPSDFEHTIHVGFc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_sup_Slot2-40_1_8061_diatracer.290879.290879.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nLC[160]C[160]LHKPETGTSFSFFc[61], unknown mods may exist in spectrum 20240927_SW-KF_S2_sup_Slot2-40_1_8061_diatracer.291839.291839.3 [INFO:] Please specify modification and rerun PTMProphet ... ​ [INFO:] written 53000/189300 spectrum_queries [ERROR:] Cannot initialize for sequence: nALFDGAEPGPGAGGGGLGAAAAAc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_sup_Slot2-40_1_8061_diatracer.296116.296116.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nQSNNIQVLHSVFDQSAEM[147]NEQIc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_sup_Slot2-40_1_8061_diatracer.297347.297347.4 [INFO:] Please specify modification and rerun PTMProphet ... ​ [INFO:] written 54000/189300 spectrum_queries [ERROR:] Cannot initialize for sequence: nDPIHIVSVMSIc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_sup_Slot2-40_1_8061_diatracer.298727.298727.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nLNEQEGVPSVFNPPPSRPc[61], unknown mods may exist in spectrum 20240927_SW-KF_S2_sup_Slot2-40_1_8061_diatracer.300508.300508.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nTTWQEFVEDLGFWRVc[61], unknown mods may exist in spectrum 20240927_SW-KF_S2_sup_Slot2-40_1_8061_diatracer.301374.301374.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nPQTPAAAARRPEGTYAGTLc[61], unknown mods may exist in spectrum 20240927_SW-KF_S2_sup_Slot2-40_1_8061_diatracer.301925.301925.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nSNMVRTNPNVESHAVGVNc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_sup_Slot2-40_1_8061_diatracer.303373.303373.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nSQTDDEEM[147]TGEc[61], unknown mods may exist in spectrum 20240927_SW-KF_S2_sup_Slot2-40_1_8061_diatracer.303449.303449.2 [INFO:] Please specify modification and rerun PTMProphet ... ​ [INFO:] written 55000/189300 spectrum_queries [ERROR:] Cannot initialize for sequence: nRSALQSINEWAAQTTD[158]GKLPEVTc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_sup_Slot2-40_1_8061_diatracer.307664.307664.4 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nAPAPAAGTEEWLc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_sup_Slot2-40_1_8061_diatracer.308378.308378.2 [INFO:] Please specify modification and rerun PTMProphet ... ​ [INFO:] written 56000/189300 spectrum_queries [ERROR:] Cannot initialize for sequence: nQLEAEDAEGLEAc[61], unknown mods may exist in spectrum 20240927_SW-KF_S2_sup_Slot2-40_1_8061_diatracer.309573.309573.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nKNVHMNDNVLHSAFEVc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_sup_Slot2-40_1_8061_diatracer.310944.310944.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nQVQLVC[160]QLPHc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_sup_Slot2-40_1_8061_diatracer.311365.311365.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nSAGTLQAHHRPGc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_sup_Slot2-40_1_8061_diatracer.312086.312086.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nNLQEGQVTDPRGIPLPPQc[61], unknown mods may exist in spectrum 20240927_SW-KF_S2_sup_Slot2-40_1_8061_diatracer.312962.312962.3 [INFO:] Please specify modification and rerun PTMProphet ... ​ [INFO:] written 57000/189300 spectrum_queries [ERROR:] Cannot initialize for sequence: nGAPGGAGSGGSGGGAHAc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_sup_Slot2-40_1_8061_diatracer.314142.314142.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nRLSGRGPAQPAAAc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_sup_Slot2-40_1_8061_diatracer.315646.315646.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: n[43]DLQPTVILAAEAc[61], unknown mods may exist in spectrum 20240927_SW-KF_S2_sup_Slot2-40_1_8061_diatracer.317410.317410.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nNEGPSGLPLEM[147]Sc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_sup_Slot2-40_1_8061_diatracer.317743.317743.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nEPLQHGGAGGFLAc[61], unknown mods may exist in spectrum 20240927_SW-KF_S2_sup_Slot2-40_1_8061_diatracer.318665.318665.2 [INFO:] Please specify modification and rerun PTMProphet ... ​ [INFO:] written 58000/189300 spectrum_queries [ERROR:] Cannot initialize for sequence: nVIM[147]VMPKVGVAVETVIGDc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_sup_Slot2-40_1_8061_diatracer.318977.318977.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nNLEAQLNNISDc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_sup_Slot2-40_1_8061_diatracer.319534.319534.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nLLADEPGGSGARDAVSNVAPc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_sup_Slot2-40_1_8061_diatracer.322160.322160.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nLADKPGEETENIIDC[160]IEc[61], unknown mods may exist in spectrum 20240927_SW-KF_S2_sup_Slot2-40_1_8061_diatracer.322593.322593.3 [INFO:] Please specify modification and rerun PTMProphet ... ​ [INFO:] written 59000/189300 spectrum_queries [ERROR:] Cannot initialize for sequence: nVTFNGLNQMIVc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_sup_Slot2-40_1_8061_diatracer.327091.327091.2 [INFO:] Please specify modification and rerun PTMProphet ... ​ [INFO:] written 60000/189300 spectrum_queries [ERROR:] Cannot initialize for sequence: nHPGTSLPAASPVTc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_sup_Slot2-40_1_8061_diatracer.331451.331451.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nDVGNLAAAAc[61], unknown mods may exist in spectrum 20240927_SW-KF_S2_sup_Slot2-40_1_8061_diatracer.331685.331685.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nLQAVEVVITHLc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_sup_Slot2-40_1_8061_diatracer.332033.332033.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nPTGSGAAAAAAc[61], unknown mods may exist in spectrum 20240927_SW-KF_S2_sup_Slot2-40_1_8061_diatracer.333111.333111.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nIGNFLNYPHRc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_sup_Slot2-40_1_8061_diatracer.333725.333725.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nVTGGKTAMAc[61], unknown mods may exist in spectrum 20240927_SW-KF_S2_sup_Slot2-40_1_8061_diatracer.333768.333768.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nQGAGAPTAPc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_sup_Slot2-40_1_8061_diatracer.334205.334205.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nAPGAARSAGRAFLc[61], unknown mods may exist in spectrum 20240927_SW-KF_S2_sup_Slot2-40_1_8061_diatracer.334359.334359.3 [INFO:] Please specify modification and rerun PTMProphet ... ​ [INFO:] written 61000/189300 spectrum_queries [ERROR:] Cannot initialize for sequence: nVTGGKTAMAc[61], unknown mods may exist in spectrum 20240927_SW-KF_S2_sup_Slot2-40_1_8061_diatracer.337068.337068.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nYKGGAAEAAc[61], unknown mods may exist in spectrum 20240927_SW-KF_S2_sup_Slot2-40_1_8061_diatracer.337141.337141.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nAASSSPDSPc[61], unknown mods may exist in spectrum 20240927_SW-KF_S2_sup_Slot2-40_1_8061_diatracer.338417.338417.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nGASGGGGLMNc[61], unknown mods may exist in spectrum 20240927_SW-KF_S2_sup_Slot2-40_1_8061_diatracer.339278.339278.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nRMTASLC[160]PRPAALQTc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_sup_Slot2-40_1_8061_diatracer.340365.340365.4 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nIEYLSEAc[61], unknown mods may exist in spectrum 20240927_SW-KF_S2_sup_Slot2-40_1_8061_diatracer.341057.341057.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nYKGGAAEAAc[61], unknown mods may exist in spectrum 20240927_SW-KF_S2_sup_Slot2-40_1_8061_diatracer.341139.341139.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nELLC[160]SGYc[61], unknown mods may exist in spectrum 20240927_SW-KF_S2_sup_Slot2-40_1_8061_diatracer.341354.341354.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nIQTRGPEc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_sup_Slot2-40_1_8061_diatracer.342946.342946.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nFC[160]LGLLSNVNRc[61], unknown mods may exist in spectrum 20240927_SW-KF_S2_sup_Slot2-40_1_8061_diatracer.343115.343115.3 [INFO:] Please specify modification and rerun PTMProphet ... ​ [INFO:] written 62000/189300 spectrum_queries [ERROR:] Cannot initialize for sequence: nPDGDIGPSSc[61], unknown mods may exist in spectrum 20240927_SW-KF_S2_sup_Slot2-40_1_8061_diatracer.343758.343758.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nVTGGKTAMAc[61], unknown mods may exist in spectrum 20240927_SW-KF_S2_sup_Slot2-40_1_8061_diatracer.344496.344496.2 [INFO:] Please specify modification and rerun PTMProphet ... ​ [INFO:] written 64000/189300 spectrum_queries [ERROR:] Cannot initialize for sequence: nDQPRHALEGPASMLLSc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_sup_Slot2-40_1_8061_diatracer.361758.361758.2 [INFO:] Please specify modification and rerun PTMProphet ... ​ [INFO:] written 65000/189300 spectrum_queries [ERROR:] Cannot initialize for sequence: nAVEDAKGSSSDSTAGVKEc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_sup_Slot2-40_1_8061_diatracer.364796.364796.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nTTGIVMDSGDGVTHTVPIc[61], unknown mods may exist in spectrum 20240927_SW-KF_S2_sup_Slot2-40_1_8061_diatracer.365166.365166.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nAVEDAKGSSSDSTAGVKEc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_sup_Slot2-40_1_8061_diatracer.366101.366101.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nPTGSILPPQLLNSPYLc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_sup_Slot2-40_1_8061_diatracer.369274.369274.2 [INFO:] Please specify modification and rerun PTMProphet ... ​ [INFO:] written 66000/189300 spectrum_queries [ERROR:] Cannot initialize for sequence: nQEGQVGHYELVMPQANc[61], unknown mods may exist in spectrum 20240927_SW-KF_S2_sup_Slot2-40_1_8061_diatracer.370343.370343.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nDQYSHLLSDHFLPYc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_sup_Slot2-40_1_8061_diatracer.373702.373702.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nTTGIVMDSGDGVTHTVPIc[61], unknown mods may exist in spectrum 20240927_SW-KF_S2_sup_Slot2-40_1_8061_diatracer.374312.374312.2 [INFO:] Please specify modification and rerun PTMProphet ... ​ [INFO:] written 67000/189300 spectrum_queries [ERROR:] Cannot initialize for sequence: nDLVDFFSAEPGMPAFAc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_sup_Slot2-40_1_8061_diatracer.377013.377013.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nLVEVGGDVQLDSVRIFc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_sup_Slot2-40_1_8061_diatracer.380595.380595.2 [INFO:] Please specify modification and rerun PTMProphet ... ​ [INFO:] written 68000/189300 spectrum_queries [ERROR:] Cannot initialize for sequence: nSSFLHLVSFWLRATKc[61], unknown mods may exist in spectrum 20240927_SW-KF_S2_sup_Slot2-40_1_8061_diatracer.383300.383300.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nDQYSHLLSDHFLPYc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_sup_Slot2-40_1_8061_diatracer.385467.385467.2 [INFO:] Please specify modification and rerun PTMProphet ... ​ [INFO:] written 69000/189300 spectrum_queries [ERROR:] Cannot initialize for sequence: nENTEDTEPGFIAc[61], unknown mods may exist in spectrum 20240927_SW-KF_S2_sup_Slot2-40_1_8061_diatracer.388735.388735.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nVQNHLPASGPTQPc[61], unknown mods may exist in spectrum 20240927_SW-KF_S2_sup_Slot2-40_1_8061_diatracer.389426.389426.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nGGTGEGEIEFVGFFAGPTPAc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_sup_Slot2-40_1_8061_diatracer.390018.390018.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nLEQEEQGAATGPPPEPREc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_sup_Slot2-40_1_8061_diatracer.392327.392327.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nDWLFAPLQPSSc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_sup_Slot2-40_1_8061_diatracer.392531.392531.2 [INFO:] Please specify modification and rerun PTMProphet ... ​ [INFO:] written 70000/189300 spectrum_queries [ERROR:] Cannot initialize for sequence: nPPSAAGPAGWAAQGSc[61], unknown mods may exist in spectrum 20240927_SW-KF_S2_sup_Slot2-40_1_8061_diatracer.396077.396077.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nELEELLLEASQESGQETLc[61], unknown mods may exist in spectrum 20240927_SW-KF_S2_sup_Slot2-40_1_8061_diatracer.396281.396281.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nGPAEAGC[160]LPGAQAGSc[61], unknown mods may exist in spectrum 20240927_SW-KF_S2_sup_Slot2-40_1_8061_diatracer.396605.396605.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nSELHIENLNM[147]Ec[61], unknown mods may exist in spectrum 20240927_SW-KF_S2_sup_Slot2-40_1_8061_diatracer.396755.396755.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nSVFASVDKVPDPSLC[160]SC[160]ISYMC[160]QSc[61], unknown mods may exist in spectrum 20240927_SW-KF_S2_sup_Slot2-40_1_8061_diatracer.397040.397040.4 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nSPAEC[160]REEHSKTPEERc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_sup_Slot2-40_1_8061_diatracer.397759.397759.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nAAIEETLLLESSc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_sup_Slot2-40_1_8061_diatracer.398247.398247.2 [INFO:] Please specify modification and rerun PTMProphet ... ​ [INFO:] written 71000/189300 spectrum_queries [ERROR:] Cannot initialize for sequence: nFTLHAGPGC[160]SSRVSSIMSHc[61], unknown mods may exist in spectrum 20240927_SW-KF_S2_sup_Slot2-40_1_8061_diatracer.401539.401539.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nKSSTFIQEVIC[160]LFLSVVGc[61], unknown mods may exist in spectrum 20240927_SW-KF_S2_sup_Slot2-40_1_8061_diatracer.401654.401654.3 [INFO:] Please specify modification and rerun PTMProphet ... ​ [INFO:] written 72000/189300 spectrum_queries [ERROR:] Cannot initialize for sequence: nLELNVPFEVPSPc[61], unknown mods may exist in spectrum 20240927_SW-KF_S2_sup_Slot2-40_1_8061_diatracer.404100.404100.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nPLVTDEAGMEALTc[61], unknown mods may exist in spectrum 20240927_SW-KF_S2_sup_Slot2-40_1_8061_diatracer.404302.404302.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nEAGEELEAASAQQc[61], unknown mods may exist in spectrum 20240927_SW-KF_S2_sup_Slot2-40_1_8061_diatracer.405939.405939.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nGQGTAATAQMVNMc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_sup_Slot2-40_1_8061_diatracer.408038.408038.2 [INFO:] Please specify modification and rerun PTMProphet ... ​ [INFO:] written 73000/189300 spectrum_queries [ERROR:] Cannot initialize for sequence: nPSGSETARSVPDMc[61], unknown mods may exist in spectrum 20240927_SW-KF_S2_sup_Slot2-40_1_8061_diatracer.410883.410883.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nSPPPSLGGTC[160]SPIc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_sup_Slot2-40_1_8061_diatracer.412301.412301.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: n[43]TRSTSSPTASYNTTSAWMc[61], unknown mods may exist in spectrum 20240927_SW-KF_S2_sup_Slot2-40_1_8061_diatracer.412303.412303.3 [INFO:] Please specify modification and rerun PTMProphet ... ​ [INFO:] written 74000/189300 spectrum_queries [ERROR:] Cannot initialize for sequence: nIQPSEPRDSAVYFC[160]ASGLc[61], unknown mods may exist in spectrum 20240927_SW-KF_S2_sup_Slot2-40_1_8061_diatracer.415156.415156.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nHHGHEHGHEHAc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_sup_Slot2-40_1_8061_diatracer.415288.415288.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nRWQETRGASSSAc[61], unknown mods may exist in spectrum 20240927_SW-KF_S2_sup_Slot2-40_1_8061_diatracer.415801.415801.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nIPARFFTTPSQAKGIDFQc[61], unknown mods may exist in spectrum 20240927_SW-KF_S2_sup_Slot2-40_1_8061_diatracer.415957.415957.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nLEGWHAPASTNHGTDLDPNc[61], unknown mods may exist in spectrum 20240927_SW-KF_S2_sup_Slot2-40_1_8061_diatracer.416191.416191.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nEVGGIIIGDDNLSc[61], unknown mods may exist in spectrum 20240927_SW-KF_S2_sup_Slot2-40_1_8061_diatracer.416904.416904.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nLFYELINESWSGPGGASAAc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_sup_Slot2-40_1_8061_diatracer.417856.417856.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nLEPFGQPGLGNAEc[61], unknown mods may exist in spectrum 20240927_SW-KF_S2_sup_Slot2-40_1_8061_diatracer.417872.417872.2 [INFO:] Please specify modification and rerun PTMProphet ... ​ [INFO:] written 75000/189300 spectrum_queries [ERROR:] Cannot initialize for sequence: nGDPGPDGPSGPPGPPc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_sup_Slot2-40_1_8061_diatracer.421059.421059.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nGEEGAGGGEGVEFLc[61], unknown mods may exist in spectrum 20240927_SW-KF_S2_sup_Slot2-40_1_8061_diatracer.421808.421808.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nTLQQMEEVVGSVc[61], unknown mods may exist in spectrum 20240927_SW-KF_S2_sup_Slot2-40_1_8061_diatracer.422314.422314.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nITTITGSTAAVFHc[61], unknown mods may exist in spectrum 20240927_SW-KF_S2_sup_Slot2-40_1_8061_diatracer.422382.422382.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nSQGRSRQAAGTGTAc[61], unknown mods may exist in spectrum 20240927_SW-KF_S2_sup_Slot2-40_1_8061_diatracer.423865.423865.2 [INFO:] Please specify modification and rerun PTMProphet ... ​ [INFO:] written 76000/189300 spectrum_queries [ERROR:] Cannot initialize for sequence: nDQPVAESPRPLAc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_sup_Slot2-40_1_8061_diatracer.425084.425084.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nGEGEGDWGQESEAc[61], unknown mods may exist in spectrum 20240927_SW-KF_S2_sup_Slot2-40_1_8061_diatracer.426095.426095.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nQFSC[160]LSLLSSWDYRDPc[61], unknown mods may exist in spectrum 20240927_SW-KF_S2_sup_Slot2-40_1_8061_diatracer.426356.426356.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nTLQQMEEVVGSVc[61], unknown mods may exist in spectrum 20240927_SW-KF_S2_sup_Slot2-40_1_8061_diatracer.427188.427188.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nQMAAAMPSTTPRc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_sup_Slot2-40_1_8061_diatracer.428887.428887.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nYTAILEKAANDPc[61], unknown mods may exist in spectrum 20240927_SW-KF_S2_sup_Slot2-40_1_8061_diatracer.429133.429133.2 [INFO:] Please specify modification and rerun PTMProphet ... ​ [INFO:] written 77000/189300 spectrum_queries [ERROR:] Cannot initialize for sequence: nEEEDDDMKELENWAGSMc[61], unknown mods may exist in spectrum 20240927_SW-KF_S2_sup_Slot2-40_1_8061_diatracer.430726.430726.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nGDPGPDGPSGPPGPPc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_sup_Slot2-40_1_8061_diatracer.430782.430782.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nDPSFVNIPQQTQSWYLGc[61], unknown mods may exist in spectrum 20240927_SW-KF_S2_sup_Slot2-40_1_8061_diatracer.431422.431422.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nTLQQMEEVVGSVc[61], unknown mods may exist in spectrum 20240927_SW-KF_S2_sup_Slot2-40_1_8061_diatracer.432040.432040.2 [INFO:] Please specify modification and rerun PTMProphet ... ​ [INFO:] written 78000/189300 spectrum_queries [ERROR:] Cannot initialize for sequence: nNSMSPGVTHRPPSAGNTGGLMGGDLTSGc[61], unknown mods may exist in spectrum 20240927_SW-KF_S2_sup_Slot2-40_1_8061_diatracer.436197.436197.4 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nSVFASVDKVPDPSLC[160]SC[160]ISYMC[160]QSc[61], unknown mods may exist in spectrum 20240927_SW-KF_S2_sup_Slot2-40_1_8061_diatracer.438359.438359.4 [INFO:] Please specify modification and rerun PTMProphet ... ​ [INFO:] written 79000/189300 spectrum_queries [ERROR:] Cannot initialize for sequence: nLQTKTIKATVYLC[160]FSLLc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_sup_Slot2-40_1_8061_diatracer.440815.440815.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nSLRPGGGGVGPGPGAAGPM[147]LGGVVc[61], unknown mods may exist in spectrum 20240927_SW-KF_S2_sup_Slot2-40_1_8061_diatracer.442920.442920.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nLQEEQFVNAVEc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_sup_Slot2-40_1_8061_diatracer.443165.443165.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nPEAALNINc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_sup_Slot2-40_1_8061_diatracer.444152.444152.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nSAGGPASSVQNFSRc[61], unknown mods may exist in spectrum 20240927_SW-KF_S2_sup_Slot2-40_1_8061_diatracer.444485.444485.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nEGAGELEALc[61], unknown mods may exist in spectrum 20240927_SW-KF_S2_sup_Slot2-40_1_8061_diatracer.445472.445472.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nLGSVLSPESc[61], unknown mods may exist in spectrum 20240927_SW-KF_S2_sup_Slot2-40_1_8061_diatracer.445534.445534.2 [INFO:] Please specify modification and rerun PTMProphet ... ​ [INFO:] written 80000/189300 spectrum_queries [ERROR:] Cannot initialize for sequence: nSSASAPDVDDPEAFPALAc[61], unknown mods may exist in spectrum 20240927_SW-KF_S2_sup_Slot2-40_1_8061_diatracer.446010.446010.4 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nQGIAPSAM[147]Ac[61], unknown mods may exist in spectrum 20240927_SW-KF_S2_sup_Slot2-40_1_8061_diatracer.446045.446045.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nPDLALAGGASc[61], unknown mods may exist in spectrum 20240927_SW-KF_S2_sup_Slot2-40_1_8061_diatracer.446265.446265.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nLEE[172]EFPSQSFPc[61], unknown mods may exist in spectrum 20240927_SW-KF_S2_sup_Slot2-40_1_8061_diatracer.447916.447916.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nYSVAGGYSVC[160]PAAc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_sup_Slot2-40_1_8061_diatracer.449053.449053.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nTAVSPPDQRDEAPLTRc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_sup_Slot2-40_1_8061_diatracer.450137.450137.4 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nPLGDWSYAYMQc[61], unknown mods may exist in spectrum 20240927_SW-KF_S2_sup_Slot2-40_1_8061_diatracer.451162.451162.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nAQSLGLLGDEHWc[61], unknown mods may exist in spectrum 20240927_SW-KF_S2_sup_Slot2-40_1_8061_diatracer.451178.451178.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nYYVSKGLENIDc[61], unknown mods may exist in spectrum 20240927_SW-KF_S2_sup_Slot2-40_1_8061_diatracer.452075.452075.3 [INFO:] Please specify modification and rerun PTMProphet ... ​ [INFO:] written 81000/189300 spectrum_queries [ERROR:] Cannot initialize for sequence: nPVPLHQGAc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_sup_Slot2-40_1_8061_diatracer.453458.453458.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nTGVGGTGIDIc[61], unknown mods may exist in spectrum 20240927_SW-KF_S2_sup_Slot2-40_1_8061_diatracer.454025.454025.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nPERTSPPAc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_sup_Slot2-40_1_8061_diatracer.454234.454234.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nVITVLVGKc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_sup_Slot2-40_1_8061_diatracer.454981.454981.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nYYVSKGLENIDc[61], unknown mods may exist in spectrum 20240927_SW-KF_S2_sup_Slot2-40_1_8061_diatracer.455745.455745.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nGAAVLPATGVWFGAc[61], unknown mods may exist in spectrum 20240927_SW-KF_S2_sup_Slot2-40_1_8061_diatracer.455905.455905.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nGASGPGARGDPSGGEAc[61], unknown mods may exist in spectrum 20240927_SW-KF_S2_sup_Slot2-40_1_8061_diatracer.457577.457577.3 [INFO:] Please specify modification and rerun PTMProphet ... ​ [INFO:] written 82000/189300 spectrum_queries [ERROR:] Cannot initialize for sequence: nGGESGHSLPC[160]VLPc[61], unknown mods may exist in spectrum 20240927_SW-KF_S2_sup_Slot2-40_1_8061_diatracer.463198.463198.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nDPRSPDAAGATILc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_sup_Slot2-40_1_8061_diatracer.463311.463311.3 [INFO:] Please specify modification and rerun PTMProphet ... ​ [INFO:] written 83000/189300 spectrum_queries [ERROR:] Cannot initialize for sequence: nVITVLVGKc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_sup_Slot2-40_1_8061_diatracer.467253.467253.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nLNIVSLEAc[61], unknown mods may exist in spectrum 20240927_SW-KF_S2_sup_Slot2-40_1_8061_diatracer.468179.468179.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nFPDHSLLAINSFc[61], unknown mods may exist in spectrum 20240927_SW-KF_S2_sup_Slot2-40_1_8061_diatracer.468890.468890.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nLNIVSLEAc[61], unknown mods may exist in spectrum 20240927_SW-KF_S2_sup_Slot2-40_1_8061_diatracer.470643.470643.2 [INFO:] Please specify modification and rerun PTMProphet ... ​ [INFO:] written 84000/189300 spectrum_queries [ERROR:] Cannot initialize for sequence: nNNLSFIETSALD[202]STNVEEAFc[61], unknown mods may exist in spectrum 20240927_SW-KF_S2_sup_Slot2-40_1_8061_diatracer.472987.472987.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nNNLSFIETSALD[202]STNVEEAFc[61], unknown mods may exist in spectrum 20240927_SW-KF_S2_sup_Slot2-40_1_8061_diatracer.473228.473228.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nGGSYSQAASSDSAQGSD[158]VSLTAC[160]c[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_sup_Slot2-40_1_8061_diatracer.475379.475379.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nGGSYSQAASSDSAQGSD[158]VSLTAC[160]c[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_sup_Slot2-40_1_8061_diatracer.476103.476103.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nGGSYSQAASSDSAQGSD[158]VSLTAC[160]c[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_sup_Slot2-40_1_8061_diatracer.476346.476346.2 [INFO:] Please specify modification and rerun PTMProphet ... ​ [INFO:] written 85000/189300 spectrum_queries [ERROR:] Cannot initialize for sequence: nEEMFAKGQPVAPYNTTc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_sup_Slot2-40_1_8061_diatracer.477665.477665.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nLSFGLEDEPLETATKEc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_sup_Slot2-40_1_8061_diatracer.477775.477775.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nSWAWGRITSSFSFASNc[61], unknown mods may exist in spectrum 20240927_SW-KF_S2_sup_Slot2-40_1_8061_diatracer.480805.480805.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nTTPSATSLPQTVVMTSPVc[61], unknown mods may exist in spectrum 20240927_SW-KF_S2_sup_Slot2-40_1_8061_diatracer.481134.481134.2 [INFO:] Please specify modification and rerun PTMProphet ... ​ [INFO:] written 86000/189300 spectrum_queries [ERROR:] Cannot initialize for sequence: nQLTVESDESGDDLLD[158]Ic[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_sup_Slot2-40_1_8061_diatracer.486234.486234.2 [INFO:] Please specify modification and rerun PTMProphet ... ​ [INFO:] written 87000/189300 spectrum_queries [ERROR:] Cannot initialize for sequence: nTDAAVMDQEPAGNRTANc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_sup_Slot2-40_1_8061_diatracer.492555.492555.2 [INFO:] Please specify modification and rerun PTMProphet ... ​ [INFO:] written 88000/189300 spectrum_queries [ERROR:] Cannot initialize for sequence: nSVVEGISSQPGNSPSGTVVc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_sup_Slot2-40_1_8061_diatracer.497142.497142.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nMDFVAGLSVGLTAIPQALAYAEVAGLPPc[61], unknown mods may exist in spectrum 20240927_SW-KF_S2_sup_Slot2-40_1_8061_diatracer.498057.498057.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nTEEIQRPDGGGGSSSTVDc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_sup_Slot2-40_1_8061_diatracer.501501.501501.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nQEGQVGHYELVM[147]PQANc[61], unknown mods may exist in spectrum 20240927_SW-KF_S2_sup_Slot2-40_1_8061_diatracer.502436.502436.2 [INFO:] Please specify modification and rerun PTMProphet ... ​ [INFO:] written 89000/189300 spectrum_queries [ERROR:] Cannot initialize for sequence: nVSQVSTPGAGVSPKKAHSC[160]EMC[160]GAILGc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_sup_Slot2-40_1_8061_diatracer.502739.502739.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nPLDNASDLTPSTKDDTAc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_sup_Slot2-40_1_8061_diatracer.503208.503208.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nIFSSHSETANLFPEAHc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_sup_Slot2-40_1_8061_diatracer.503936.503936.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nLTATSASWVQAIPLPQPPEc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_sup_Slot2-40_1_8061_diatracer.504575.504575.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nTLGTAAGLLLWAAAc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_sup_Slot2-40_1_8061_diatracer.505646.505646.2 [INFO:] Please specify modification and rerun PTMProphet ... ​ [INFO:] written 90000/189300 spectrum_queries [ERROR:] Cannot initialize for sequence: nFWDPKTGQSLATc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_sup_Slot2-40_1_8061_diatracer.508674.508674.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nFWDPKTGQSLATc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_sup_Slot2-40_1_8061_diatracer.508677.508677.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nGVVLDIEEQVRAc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_sup_Slot2-40_1_8061_diatracer.509800.509800.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nMFLNTSRPEDKc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_sup_Slot2-40_1_8061_diatracer.510451.510451.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nDTVQALC[160]FWISc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_sup_Slot2-40_1_8061_diatracer.510604.510604.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nVGSHPEGGASWLSTAANFLSRSFYWc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_sup_Slot2-40_1_8061_diatracer.512022.512022.4 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nAPGPAEGLILSAC[160]GAc[61], unknown mods may exist in spectrum 20240927_SW-KF_S2_sup_Slot2-40_1_8061_diatracer.512971.512971.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nELSVC[160]LSSFSELLC[160]SSDVAc[61], unknown mods may exist in spectrum 20240927_SW-KF_S2_sup_Slot2-40_1_8061_diatracer.513047.513047.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nVTAC[160]TPSDGPGGGAAAc[61], unknown mods may exist in spectrum 20240927_SW-KF_S2_sup_Slot2-40_1_8061_diatracer.513204.513204.2 [INFO:] Please specify modification and rerun PTMProphet ... ​ [INFO:] written 91000/189300 spectrum_queries [ERROR:] Cannot initialize for sequence: nLEPFGQPGLGNAEc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_sup_Slot2-40_1_8061_diatracer.514548.514548.2 [INFO:] Please specify modification and rerun PTMProphet ... ​ [INFO:] written 92000/189300 spectrum_queries [ERROR:] Cannot initialize for sequence: nPEPRSYQTLEKESLVPFc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_sup_Slot2-40_1_8061_diatracer.518938.518938.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nPPSAAGPAGWAAQGSc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_sup_Slot2-40_1_8061_diatracer.519150.519150.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nLEPFGQPGLGNAEc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_sup_Slot2-40_1_8061_diatracer.519525.519525.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nEPAAAAAALLGGEEIc[61], unknown mods may exist in spectrum 20240927_SW-KF_S2_sup_Slot2-40_1_8061_diatracer.520003.520003.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nQVEEGSLDLDELSSSAAAKAc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_sup_Slot2-40_1_8061_diatracer.523701.523701.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nVGSHPEGGASWLSTAANFLSRSFYWc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_sup_Slot2-40_1_8061_diatracer.523712.523712.4 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nDNELMMNWHLAc[61], unknown mods may exist in spectrum 20240927_SW-KF_S2_sup_Slot2-40_1_8061_diatracer.524102.524102.2 [INFO:] Please specify modification and rerun PTMProphet ... ​ [INFO:] written 93000/189300 spectrum_queries [ERROR:] Cannot initialize for sequence: nSLHYSAALGSIGGGLVVVTRGc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_sup_Slot2-40_1_8061_diatracer.525930.525930.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nGVVLDIEEQVRAc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_sup_Slot2-40_1_8061_diatracer.526167.526167.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nSMSTSNLTHPRMLNNHPDc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_sup_Slot2-40_1_8061_diatracer.526856.526856.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nYVNLDAWNRELLDKYC[160]c[61], unknown mods may exist in spectrum 20240927_SW-KF_S2_sup_Slot2-40_1_8061_diatracer.528454.528454.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nEPAAAAAALLGGEEIc[61], unknown mods may exist in spectrum 20240927_SW-KF_S2_sup_Slot2-40_1_8061_diatracer.529370.529370.2 [INFO:] Please specify modification and rerun PTMProphet ... ​ [INFO:] written 94000/189300 spectrum_queries [ERROR:] Cannot initialize for sequence: nPAGGAVLHSPGAM[147]FGALSAWRc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_sup_Slot2-40_1_8061_diatracer.529746.529746.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nC[160]VAVGPGGYAVVVC[160]IGQGWTAc[61], unknown mods may exist in spectrum 20240927_SW-KF_S2_sup_Slot2-40_1_8061_diatracer.529946.529946.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nEPAAAAAALLGGEEIc[61], unknown mods may exist in spectrum 20240927_SW-KF_S2_sup_Slot2-40_1_8061_diatracer.534040.534040.2 [INFO:] Please specify modification and rerun PTMProphet ... ​ [INFO:] written 95000/189300 spectrum_queries [ERROR:] Cannot initialize for sequence: nHFWLYQALVVAC[160]PWVYc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_sup_Slot2-40_1_8061_diatracer.536371.536371.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nGGEGAAADQGC[160]AVC[160]SAGKGAHGMc[61], unknown mods may exist in spectrum 20240927_SW-KF_S2_sup_Slot2-40_1_8061_diatracer.536953.536953.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nSYPIQAVEEEASc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_sup_Slot2-40_1_8061_diatracer.540240.540240.2 [INFO:] Please specify modification and rerun PTMProphet ... ​ [INFO:] written 96000/189300 spectrum_queries [ERROR:] Cannot initialize for sequence: nQANGEDIDVTSNDc[61], unknown mods may exist in spectrum 20240927_SW-KF_S2_sup_Slot2-40_1_8061_diatracer.542884.542884.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nLEPFGQPGLGNAEc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_sup_Slot2-40_1_8061_diatracer.544888.544888.2 [INFO:] Please specify modification and rerun PTMProphet ... ​ [INFO:] written 97000/189300 spectrum_queries [ERROR:] Cannot initialize for sequence: nEGIAQTC[160]SQC[160]PEc[61], unknown mods may exist in spectrum 20240927_SW-KF_S2_sup_Slot2-40_1_8061_diatracer.547531.547531.2 [INFO:] Please specify modification and rerun PTMProphet ... ​ [INFO:] written 98000/189300 spectrum_queries [ERROR:] Cannot initialize for sequence: nLSSMSEGLSDMPEc[61], unknown mods may exist in spectrum 20240927_SW-KF_S2_sup_Slot2-40_1_8061_diatracer.552499.552499.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nGFSC[160]LSLLNSWDc[61], unknown mods may exist in spectrum 20240927_SW-KF_S2_sup_Slot2-40_1_8061_diatracer.555627.555627.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nFTVDSFGNYASC[160]GQIDFSc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_sup_Slot2-40_1_8061_diatracer.555895.555895.3 [INFO:] Please specify modification and rerun PTMProphet ... ​ [INFO:] written 99000/189300 spectrum_queries [ERROR:] Cannot initialize for sequence: nDLDSALLAEATLELSTTENTc[61], unknown mods may exist in spectrum 20240927_SW-KF_S2_sup_Slot2-40_1_8061_diatracer.557782.557782.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nLPSVGEESTc[61], unknown mods may exist in spectrum 20240927_SW-KF_S2_sup_Slot2-40_1_8061_diatracer.558689.558689.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nVLEYMAAGAc[61], unknown mods may exist in spectrum 20240927_SW-KF_S2_sup_Slot2-40_1_8061_diatracer.558936.558936.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nHAPPHPVRDLYSc[61], unknown mods may exist in spectrum 20240927_SW-KF_S2_sup_Slot2-40_1_8061_diatracer.559985.559985.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nPGLSSWPC[160]c[61], unknown mods may exist in spectrum 20240927_SW-KF_S2_sup_Slot2-40_1_8061_diatracer.561488.561488.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nYTGMLETVc[61], unknown mods may exist in spectrum 20240927_SW-KF_S2_sup_Slot2-40_1_8061_diatracer.561746.561746.2 [INFO:] Please specify modification and rerun PTMProphet ... ​ [INFO:] written 100000/189300 spectrum_queries [ERROR:] Cannot initialize for sequence: nTC[160]IAQQQGGAAEPGc[61], unknown mods may exist in spectrum 20240927_SW-KF_S2_sup_Slot2-40_1_8061_diatracer.563327.563327.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nTTAAGGFLHc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_sup_Slot2-40_1_8061_diatracer.563566.563566.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nLSMVMQKLEASDAc[61], unknown mods may exist in spectrum 20240927_SW-KF_S2_sup_Slot2-40_1_8061_diatracer.563974.563974.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nNYIQASGLAc[61], unknown mods may exist in spectrum 20240927_SW-KF_S2_sup_Slot2-40_1_8061_diatracer.564001.564001.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nC[160]LFLGELKDDINc[61], unknown mods may exist in spectrum 20240927_SW-KF_S2_sup_Slot2-40_1_8061_diatracer.564278.564278.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nGQTNNAASASASNSTc[61], unknown mods may exist in spectrum 20240927_SW-KF_S2_sup_Slot2-40_1_8061_diatracer.567936.567936.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nYAISM[147]NTGFELSc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_sup_Slot2-40_1_8061_diatracer.568230.568230.3 [INFO:] Please specify modification and rerun PTMProphet ... ​ [INFO:] written 101000/189300 spectrum_queries [ERROR:] Cannot initialize for sequence: nLQKHGVC[160]IRVLGc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_sup_Slot2-40_1_8061_diatracer.568980.568980.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nC[160]LFLGELKDDINc[61], unknown mods may exist in spectrum 20240927_SW-KF_S2_sup_Slot2-40_1_8061_diatracer.569152.569152.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nSILEVHQRIHIc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_sup_Slot2-40_1_8061_diatracer.569816.569816.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nVTASSPVDLLPWKc[61], unknown mods may exist in spectrum 20240927_SW-KF_S2_sup_Slot2-40_1_8061_diatracer.570341.570341.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nAPGPAEGLILSAC[160]GAc[61], unknown mods may exist in spectrum 20240927_SW-KF_S2_sup_Slot2-40_1_8061_diatracer.571453.571453.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nGDGSRFPEVFSADc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_sup_Slot2-40_1_8061_diatracer.573831.573831.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nGHLAFLSGQc[61], unknown mods may exist in spectrum 20240927_SW-KF_S2_sup_Slot2-40_1_8061_diatracer.575186.575186.2 [INFO:] Please specify modification and rerun PTMProphet ... ​ [INFO:] written 102000/189300 spectrum_queries [ERROR:] Cannot initialize for sequence: nYIYYLDWMWSc[61], unknown mods may exist in spectrum 20240927_SW-KF_S2_sup_Slot2-40_1_8061_diatracer.577256.577256.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nAPGPAEGLILSAC[160]GAc[61], unknown mods may exist in spectrum 20240927_SW-KF_S2_sup_Slot2-40_1_8061_diatracer.577947.577947.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nLREEAVGSc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_sup_Slot2-40_1_8061_diatracer.579227.579227.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nPSATGPDGPSEEAEAc[61], unknown mods may exist in spectrum 20240927_SW-KF_S2_sup_Slot2-40_1_8061_diatracer.579982.579982.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nLPQGALPLDc[61], unknown mods may exist in spectrum 20240927_SW-KF_S2_sup_Slot2-40_1_8061_diatracer.580036.580036.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nSTSPPPSPEc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_sup_Slot2-40_1_8061_diatracer.580606.580606.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nEKTEMEGVc[61], unknown mods may exist in spectrum 20240927_SW-KF_S2_sup_Slot2-40_1_8061_diatracer.581584.581584.2 [INFO:] Please specify modification and rerun PTMProphet ... ​ [INFO:] written 103000/189300 spectrum_queries [ERROR:] Cannot initialize for sequence: nISIAHKNGQDLEGc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_sup_Slot2-40_1_8061_diatracer.583656.583656.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nC[160]LFLGELKDDINc[61], unknown mods may exist in spectrum 20240927_SW-KF_S2_sup_Slot2-40_1_8061_diatracer.583799.583799.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nVVGQQDLMINNPLc[61], unknown mods may exist in spectrum 20240927_SW-KF_S2_sup_Slot2-40_1_8061_diatracer.584110.584110.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nGAAAAGGGGGGAAAc[61], unknown mods may exist in spectrum 20240927_SW-KF_S2_sup_Slot2-40_1_8061_diatracer.584574.584574.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nDLPSSPRGGc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_sup_Slot2-40_1_8061_diatracer.584862.584862.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nYVNAFSARTLVMc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_sup_Slot2-40_1_8061_diatracer.585202.585202.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nVGVDTKKGAEQITGc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_sup_Slot2-40_1_8061_diatracer.585600.585600.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nEKEGSSSAAc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_sup_Slot2-40_1_8061_diatracer.586157.586157.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nYGTNNRIGQPRPc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_sup_Slot2-40_1_8061_diatracer.586635.586635.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nGEASVLESPQEAPEc[61], unknown mods may exist in spectrum 20240927_SW-KF_S2_sup_Slot2-40_1_8061_diatracer.587303.587303.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nGPGAATKGDEGQEGEc[61], unknown mods may exist in spectrum 20240927_SW-KF_S2_sup_Slot2-40_1_8061_diatracer.587920.587920.3 [INFO:] Please specify modification and rerun PTMProphet ... ​ [INFO:] written 104000/189300 spectrum_queries [ERROR:] Cannot initialize for sequence: nITGLDPAGPNFEYc[61], unknown mods may exist in spectrum 20240927_SW-KF_S2_sup_Slot2-40_1_8061_diatracer.590927.590927.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nVAVSTEETNc[61], unknown mods may exist in spectrum 20240927_SW-KF_S2_sup_Slot2-40_1_8061_diatracer.592219.592219.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nLAEQTLESDPLAQc[61], unknown mods may exist in spectrum 20240927_SW-KF_S2_sup_Slot2-40_1_8061_diatracer.593173.593173.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nGPERELAEVAAVAQc[61], unknown mods may exist in spectrum 20240927_SW-KF_S2_sup_Slot2-40_1_8061_diatracer.593791.593791.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nLDEGSASAPAc[61], unknown mods may exist in spectrum 20240927_SW-KF_S2_sup_Slot2-40_1_8061_diatracer.594449.594449.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nKMAAVSSSGSc[61], unknown mods may exist in spectrum 20240927_SW-KF_S2_sup_Slot2-40_1_8061_diatracer.594601.594601.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nDKITGQSLGYGFVNYIDc[61], unknown mods may exist in spectrum 20240927_SW-KF_S2_sup_Slot2-40_1_8061_diatracer.594612.594612.4 [INFO:] Please specify modification and rerun PTMProphet ... ​ [INFO:] written 105000/189300 spectrum_queries [ERROR:] Cannot initialize for sequence: nLAGSALTDKHSDKSc[61], unknown mods may exist in spectrum 20240927_SW-KF_S2_sup_Slot2-40_1_8061_diatracer.595337.595337.3 [INFO:] Please specify modification and rerun PTMProphet ... ​ [INFO:] written 106000/189300 spectrum_queries [ERROR:] Cannot initialize for sequence: nGRFTSGSAPGPTTPVGEAEAc[61], unknown mods may exist in spectrum 20240927_SW-KF_S2_sup_Slot2-40_1_8061_diatracer.603821.603821.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nSASDDPSRAIQTLQMELc[61], unknown mods may exist in spectrum 20240927_SW-KF_S2_sup_Slot2-40_1_8061_diatracer.605252.605252.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nSASDDPSRAIQTLQMELc[61], unknown mods may exist in spectrum 20240927_SW-KF_S2_sup_Slot2-40_1_8061_diatracer.606340.606340.2 [INFO:] Please specify modification and rerun PTMProphet ... ​ [INFO:] written 107000/189300 spectrum_queries [ERROR:] Cannot initialize for sequence: nSASDDPSRAIQTLQMELc[61], unknown mods may exist in spectrum 20240927_SW-KF_S2_sup_Slot2-40_1_8061_diatracer.607427.607427.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nLDAVGAVGGGEGAAAASGAVGPVc[61], unknown mods may exist in spectrum 20240927_SW-KF_S2_sup_Slot2-40_1_8061_diatracer.608383.608383.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nYTIVVSATASDAAPLQYLc[61], unknown mods may exist in spectrum 20240927_SW-KF_S2_sup_Slot2-40_1_8061_diatracer.612324.612324.2 [INFO:] Please specify modification and rerun PTMProphet ... ​ [INFO:] written 108000/189300 spectrum_queries [ERROR:] Cannot initialize for sequence: nSALATLVPPQASGC[160]TFLPc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_sup_Slot2-40_1_8061_diatracer.616428.616428.2 [INFO:] Please specify modification and rerun PTMProphet ... ​ [INFO:] written 109000/189300 spectrum_queries [ERROR:] Cannot initialize for sequence: nSASDDPSRAIQTLQMELc[61], unknown mods may exist in spectrum 20240927_SW-KF_S2_sup_Slot2-40_1_8061_diatracer.619374.619374.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nTGSVVTFPGLSNAC[160]SRARDTASGSEAWAc[61], unknown mods may exist in spectrum 20240927_SW-KF_S2_sup_Slot2-40_1_8061_diatracer.621220.621220.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nFYD[202]ANYDGKE[216]YDPVc[61], unknown mods may exist in spectrum 20240927_SW-KF_S2_sup_Slot2-40_1_8061_diatracer.622897.622897.2 [INFO:] Please specify modification and rerun PTMProphet ... ​ [INFO:] written 110000/189300 spectrum_queries [ERROR:] Cannot initialize for sequence: nGM[147]YITYASSNVSSSTFYFVc[61], unknown mods may exist in spectrum 20240927_SW-KF_S2_sup_Slot2-40_1_8061_diatracer.625071.625071.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nTHHSGEC[160]FQLPEGLSAQGPGc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_sup_Slot2-40_1_8061_diatracer.627552.627552.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nFDVGDPTVTFQFAVAQHAEAc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_sup_Slot2-40_1_8061_diatracer.628863.628863.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nEQEELALFVAARc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_sup_Slot2-40_1_8061_diatracer.629843.629843.2 [INFO:] Please specify modification and rerun PTMProphet ... ​ [INFO:] written 111000/189300 spectrum_queries [ERROR:] Cannot initialize for sequence: nELSFRGTAASVEGAc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_sup_Slot2-40_1_8061_diatracer.630672.630672.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nELEAAPVQVYDKc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_sup_Slot2-40_1_8061_diatracer.631407.631407.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nLLEAHEEQNVDSc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_sup_Slot2-40_1_8061_diatracer.632290.632290.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nIDAASAIQGTPSSSSc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_sup_Slot2-40_1_8061_diatracer.634652.634652.2 [INFO:] Please specify modification and rerun PTMProphet ... ​ [INFO:] written 112000/189300 spectrum_queries [ERROR:] Cannot initialize for sequence: nKDVAC[160]VLLHDPLSPSKVGVLLFGAPVDc[61], unknown mods may exist in spectrum 20240927_SW-KF_S2_sup_Slot2-40_1_8061_diatracer.635763.635763.4 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nEQEELALFVAARc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_sup_Slot2-40_1_8061_diatracer.636363.636363.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nQSFVPTSYVSSGTSWINPSSc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_sup_Slot2-40_1_8061_diatracer.636930.636930.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nGEESKISYPNIFFMIDSFc[61], unknown mods may exist in spectrum 20240927_SW-KF_S2_sup_Slot2-40_1_8061_diatracer.637866.637866.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nAGERAGGSSSAAGPGGAGHGAGVAAAAc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_sup_Slot2-40_1_8061_diatracer.638824.638824.3 [INFO:] Please specify modification and rerun PTMProphet ... ​ [INFO:] written 113000/189300 spectrum_queries [ERROR:] Cannot initialize for sequence: nTKTC[160]MQNAVDQWNGFGC[160]DMVAELLAc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_sup_Slot2-40_1_8061_diatracer.645623.645623.4 [INFO:] Please specify modification and rerun PTMProphet ... ​ [INFO:] written 114000/189300 spectrum_queries [ERROR:] Cannot initialize for sequence: nREEEMEMSDDEIEEMTETKETEESc[61], unknown mods may exist in spectrum 20240927_SW-KF_S2_sup_Slot2-40_1_8061_diatracer.646250.646250.4 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nTFLQPSGNMDDSGFFSIQKc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_sup_Slot2-40_1_8061_diatracer.647403.647403.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nEIEEEPLSEDLEc[61], unknown mods may exist in spectrum 20240927_SW-KF_S2_sup_Slot2-40_1_8061_diatracer.647852.647852.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nQDHPSSMGVYGQESGGFSGPGc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_sup_Slot2-40_1_8061_diatracer.648687.648687.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nGGIDHINALDENLc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_sup_Slot2-40_1_8061_diatracer.649674.649674.2 [INFO:] Please specify modification and rerun PTMProphet ... ​ [INFO:] written 115000/189300 spectrum_queries [ERROR:] Cannot initialize for sequence: nGNLIPPPSGC[160]SIGLVGPAVLALFVGLLGAAGc[61], unknown mods may exist in spectrum 20240927_SW-KF_S2_sup_Slot2-40_1_8061_diatracer.651961.651961.4 [INFO:] Please specify modification and rerun PTMProphet ... ​ [INFO:] written 116000/189300 spectrum_queries [ERROR:] Cannot initialize for sequence: nGEESKISYPNIFFMIDSFc[61], unknown mods may exist in spectrum 20240927_SW-KF_S2_sup_Slot2-40_1_8061_diatracer.657417.657417.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nVC[160]C[160]DQQPEGRAPVAEADAAAc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_sup_Slot2-40_1_8061_diatracer.658304.658304.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nELEAAPVQVYDKc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_sup_Slot2-40_1_8061_diatracer.659482.659482.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nEPGPWGGPAQAGGAEAPGATALC[160]c[61], unknown mods may exist in spectrum 20240927_SW-KF_S2_sup_Slot2-40_1_8061_diatracer.659605.659605.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nLHTQQSPTSQWHC[160]RC[160]RGc[61], unknown mods may exist in spectrum 20240927_SW-KF_S2_sup_Slot2-40_1_8061_diatracer.659752.659752.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nPDVPMDLVDPSHVSGFTVSPc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_sup_Slot2-40_1_8061_diatracer.659819.659819.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nSSSVSSSAASRMIIc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_sup_Slot2-40_1_8061_diatracer.660457.660457.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nLDDQISRNSVHVc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_sup_Slot2-40_1_8061_diatracer.660615.660615.2 [INFO:] Please specify modification and rerun PTMProphet ... ​ [INFO:] written 117000/189300 spectrum_queries [ERROR:] Cannot initialize for sequence: nEQALEELVAC[160]AQc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_sup_Slot2-40_1_8061_diatracer.661751.661751.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nYM[147]MDIATVGPYLSGNED[158]Rc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_sup_Slot2-40_1_8061_diatracer.661980.661980.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nQQSAFLPHPSHSSc[61], unknown mods may exist in spectrum 20240927_SW-KF_S2_sup_Slot2-40_1_8061_diatracer.662496.662496.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nSPASDTYIVFGE[172]Ac[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_sup_Slot2-40_1_8061_diatracer.663366.663366.2 [INFO:] Please specify modification and rerun PTMProphet ... ​ [INFO:] written 118000/189300 spectrum_queries [ERROR:] Cannot initialize for sequence: nDMVVGFANLGILHc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_sup_Slot2-40_1_8061_diatracer.667267.667267.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nHVFGESDELIGQKVAHALAEc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_sup_Slot2-40_1_8061_diatracer.667912.667912.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nEC[160]LNNKQQLMRc[61], unknown mods may exist in spectrum 20240927_SW-KF_S2_sup_Slot2-40_1_8061_diatracer.669527.669527.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nVLSPTSVFKSC[160]AFc[61], unknown mods may exist in spectrum 20240927_SW-KF_S2_sup_Slot2-40_1_8061_diatracer.669928.669928.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nQDKEELSIEAAQc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_sup_Slot2-40_1_8061_diatracer.670464.670464.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nAWSAGLLLLLQLARLWPKGc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_sup_Slot2-40_1_8061_diatracer.670964.670964.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nLM[147]SSAEEC[160]C[160]RNLAFSLALRSM[147]QNSPc[61], unknown mods may exist in spectrum 20240927_SW-KF_S2_sup_Slot2-40_1_8061_diatracer.671749.671749.4 [INFO:] Please specify modification and rerun PTMProphet ... ​ [INFO:] written 119000/189300 spectrum_queries [ERROR:] Cannot initialize for sequence: nKEEDGFAAAAAAATALSVGC[160]SKc[61], unknown mods may exist in spectrum 20240927_SW-KF_S2_sup_Slot2-40_1_8061_diatracer.672664.672664.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nEQEELALFVAARc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_sup_Slot2-40_1_8061_diatracer.673295.673295.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nLHTLAEGTFTPLTALSHLQINENPFDc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_sup_Slot2-40_1_8061_diatracer.674186.674186.4 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nNASFYANSSTLYYc[61], unknown mods may exist in spectrum 20240927_SW-KF_S2_sup_Slot2-40_1_8061_diatracer.675984.675984.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nAGE[172]GAAAAAAAAAAAAATGc[61], unknown mods may exist in spectrum 20240927_SW-KF_S2_sup_Slot2-40_1_8061_diatracer.676929.676929.3 [INFO:] Please specify modification and rerun PTMProphet ... ​ [INFO:] written 120000/189300 spectrum_queries [ERROR:] Cannot initialize for sequence: nDQWFWENFSSLc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_sup_Slot2-40_1_8061_diatracer.677951.677951.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nSTGC[160]VARSLc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_sup_Slot2-40_1_8061_diatracer.678106.678106.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nANGQIVPSYVHPHc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_sup_Slot2-40_1_8061_diatracer.679028.679028.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nIETGSLSEKc[61], unknown mods may exist in spectrum 20240927_SW-KF_S2_sup_Slot2-40_1_8061_diatracer.679082.679082.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nVLGLTVSQNc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_sup_Slot2-40_1_8061_diatracer.679672.679672.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nHILDGTAEEc[61], unknown mods may exist in spectrum 20240927_SW-KF_S2_sup_Slot2-40_1_8061_diatracer.679776.679776.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nHILDGTAEEc[61], unknown mods may exist in spectrum 20240927_SW-KF_S2_sup_Slot2-40_1_8061_diatracer.679777.679777.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nVSGVHGSLGFc[61], unknown mods may exist in spectrum 20240927_SW-KF_S2_sup_Slot2-40_1_8061_diatracer.681002.681002.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nIQHLQSQTGLNGGLSHIDc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_sup_Slot2-40_1_8061_diatracer.681092.681092.4 [INFO:] Please specify modification and rerun PTMProphet ... ​ [INFO:] written 121000/189300 spectrum_queries [ERROR:] Cannot initialize for sequence: nLHGPHSLIAAPQIC[160]c[61], unknown mods may exist in spectrum 20240927_SW-KF_S2_sup_Slot2-40_1_8061_diatracer.686448.686448.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nTDNQNDPEGDQENc[61], unknown mods may exist in spectrum 20240927_SW-KF_S2_sup_Slot2-40_1_8061_diatracer.687178.687178.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nFTLLTQAGAc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_sup_Slot2-40_1_8061_diatracer.688987.688987.2 [INFO:] Please specify modification and rerun PTMProphet ... ​ [INFO:] written 122000/189300 spectrum_queries [ERROR:] Cannot initialize for sequence: nNASFYANSSTLYYc[61], unknown mods may exist in spectrum 20240927_SW-KF_S2_sup_Slot2-40_1_8061_diatracer.689881.689881.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nPPSC[160]PLLC[160]c[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_sup_Slot2-40_1_8061_diatracer.690188.690188.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nC[160]VAGSPQPVc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_sup_Slot2-40_1_8061_diatracer.690568.690568.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nKGDGGGAGGGGGGGc[61], unknown mods may exist in spectrum 20240927_SW-KF_S2_sup_Slot2-40_1_8061_diatracer.690834.690834.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nGNTISGSSAEc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_sup_Slot2-40_1_8061_diatracer.691066.691066.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nLSNITQYLc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_sup_Slot2-40_1_8061_diatracer.692415.692415.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nVQLRNLASKVLPFc[61], unknown mods may exist in spectrum 20240927_SW-KF_S2_sup_Slot2-40_1_8061_diatracer.693530.693530.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nNIVTVFPFSKAGRc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_sup_Slot2-40_1_8061_diatracer.693639.693639.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nELLLALSWLLARGc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_sup_Slot2-40_1_8061_diatracer.693898.693898.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nFSVSGKNIEENLQc[61], unknown mods may exist in spectrum 20240927_SW-KF_S2_sup_Slot2-40_1_8061_diatracer.694908.694908.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nELLDTVTAPc[61], unknown mods may exist in spectrum 20240927_SW-KF_S2_sup_Slot2-40_1_8061_diatracer.694974.694974.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nVQLRNLASKVLPFc[61], unknown mods may exist in spectrum 20240927_SW-KF_S2_sup_Slot2-40_1_8061_diatracer.695504.695504.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nHILDGTAEEc[61], unknown mods may exist in spectrum 20240927_SW-KF_S2_sup_Slot2-40_1_8061_diatracer.695662.695662.2 [INFO:] Please specify modification and rerun PTMProphet ... ​ [INFO:] written 123000/189300 spectrum_queries [ERROR:] Cannot initialize for sequence: nELLLALSWLLARGc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_sup_Slot2-40_1_8061_diatracer.697855.697855.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nNENEYILVLFYSc[61], unknown mods may exist in spectrum 20240927_SW-KF_S2_sup_Slot2-40_1_8061_diatracer.698033.698033.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nIQHLQSQTGLNGGLSHIDc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_sup_Slot2-40_1_8061_diatracer.698962.698962.4 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nLLEKFSGLTSKLGTc[61], unknown mods may exist in spectrum 20240927_SW-KF_S2_sup_Slot2-40_1_8061_diatracer.699852.699852.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nSQAWSDMPQIIKc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_sup_Slot2-40_1_8061_diatracer.700642.700642.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nTAGPSNSATC[160]c[61], unknown mods may exist in spectrum 20240927_SW-KF_S2_sup_Slot2-40_1_8061_diatracer.700813.700813.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nEVASQLGYEc[61], unknown mods may exist in spectrum 20240927_SW-KF_S2_sup_Slot2-40_1_8061_diatracer.702132.702132.2 [INFO:] Please specify modification and rerun PTMProphet ... ​ [INFO:] written 124000/189300 spectrum_queries [ERROR:] Cannot initialize for sequence: nHVADGEDHAc[61], unknown mods may exist in spectrum 20240927_SW-KF_S2_sup_Slot2-40_1_8061_diatracer.702387.702387.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nPGQAAAFNVTc[61], unknown mods may exist in spectrum 20240927_SW-KF_S2_sup_Slot2-40_1_8061_diatracer.703365.703365.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nMSPTGAPSSNc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_sup_Slot2-40_1_8061_diatracer.703926.703926.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nLEAMLFAIDEINKc[61], unknown mods may exist in spectrum 20240927_SW-KF_S2_sup_Slot2-40_1_8061_diatracer.704000.704000.3 [INFO:] Please specify modification and rerun PTMProphet ... ​ [INFO:] written 125000/189300 spectrum_queries [ERROR:] Cannot initialize for sequence: nLTTMQALAEc[61], unknown mods may exist in spectrum 20240927_SW-KF_S2_sup_Slot2-40_1_8061_diatracer.709415.709415.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nATISLDQHTc[61], unknown mods may exist in spectrum 20240927_SW-KF_S2_sup_Slot2-40_1_8061_diatracer.709557.709557.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nGAPTRASASSAc[61], unknown mods may exist in spectrum 20240927_SW-KF_S2_sup_Slot2-40_1_8061_diatracer.713249.713249.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nDQGPAGQGGQAc[61], unknown mods may exist in spectrum 20240927_SW-KF_S2_sup_Slot2-40_1_8061_diatracer.713499.713499.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nTEKSMMPHTPLHPc[61], unknown mods may exist in spectrum 20240927_SW-KF_S2_sup_Slot2-40_1_8061_diatracer.713864.713864.3 [INFO:] Please specify modification and rerun PTMProphet ... ​ [INFO:] written 126000/189300 spectrum_queries [ERROR:] Cannot initialize for sequence: nVHVVALATEQERQIC[160]Rc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_sup_Slot2-40_1_8061_diatracer.714495.714495.4 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nQAPPPAAC[160]PFSSHLc[61], unknown mods may exist in spectrum 20240927_SW-KF_S2_sup_Slot2-40_1_8061_diatracer.715063.715063.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nENQANTSVVc[61], unknown mods may exist in spectrum 20240927_SW-KF_S2_sup_Slot2-40_1_8061_diatracer.716732.716732.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nEFAGPAVAAEEAGTRc[61], unknown mods may exist in spectrum 20240927_SW-KF_S2_sup_Slot2-40_1_8061_diatracer.716939.716939.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nM[147]VWEILHQQLLc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_sup_Slot2-40_1_8061_diatracer.718584.718584.3 [INFO:] Please specify modification and rerun PTMProphet ... ​ [INFO:] written 127000/189300 spectrum_queries [ERROR:] Cannot initialize for sequence: nDQGGEHPWAGQLLFFGVC[160]AMSVVMLSc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_sup_Slot2-40_1_8061_diatracer.723390.723390.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nNPPPAPQPPGQTTVPFPMc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_sup_Slot2-40_1_8061_diatracer.723803.723803.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nLGGSPTNGNSMAPSSPDSDPc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_sup_Slot2-40_1_8061_diatracer.723975.723975.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nFTFTVPAMPALTPAPSPASc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_sup_Slot2-40_1_8061_diatracer.725292.725292.2 [INFO:] Please specify modification and rerun PTMProphet ... ​ [INFO:] written 128000/189300 spectrum_queries [ERROR:] Cannot initialize for sequence: nEAAWAITNATSGGTPE[172]QIc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_sup_Slot2-40_1_8061_diatracer.731128.731128.2 [INFO:] Please specify modification and rerun PTMProphet ... ​ [INFO:] written 129000/189300 spectrum_queries [ERROR:] Cannot initialize for sequence: nM[147]RGFQASLSSHIPPTAVGc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_sup_Slot2-40_1_8061_diatracer.736225.736225.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nVINVDDDGNELGSGIMELc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_sup_Slot2-40_1_8061_diatracer.737447.737447.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nPESYVSSVSSGSLSSNSSAAc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_sup_Slot2-40_1_8061_diatracer.737698.737698.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nPALAAGPAALLAALLAC[160]GVALc[61], unknown mods may exist in spectrum 20240927_SW-KF_S2_sup_Slot2-40_1_8061_diatracer.739862.739862.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nEAAWAITNATSGGTPE[172]QIc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_sup_Slot2-40_1_8061_diatracer.740740.740740.2 [INFO:] Please specify modification and rerun PTMProphet ... ​ [INFO:] written 130000/189300 spectrum_queries [ERROR:] Cannot initialize for sequence: nD[158]LEAEIE[172]AKLKADDDDc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_sup_Slot2-40_1_8061_diatracer.741019.741019.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nDLAPPSEPSESFQEHTVc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_sup_Slot2-40_1_8061_diatracer.742856.742856.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nIVEPAMWAYTGAASc[61], unknown mods may exist in spectrum 20240927_SW-KF_S2_sup_Slot2-40_1_8061_diatracer.746324.746324.2 [INFO:] Please specify modification and rerun PTMProphet ... ​ [INFO:] written 131000/189300 spectrum_queries [ERROR:] Cannot initialize for sequence: nYQLNLPPYPDTEC[160]VYRLQc[61], unknown mods may exist in spectrum 20240927_SW-KF_S2_sup_Slot2-40_1_8061_diatracer.747336.747336.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nC[160]QELLNYIMDTVKDSSNGAc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_sup_Slot2-40_1_8061_diatracer.747780.747780.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nLVDESSANPGMRSSc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_sup_Slot2-40_1_8061_diatracer.749241.749241.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nDIKDEIAHISDMNc[61], unknown mods may exist in spectrum 20240927_SW-KF_S2_sup_Slot2-40_1_8061_diatracer.749502.749502.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nHWLSDNRVLQGNQRVANESc[61], unknown mods may exist in spectrum 20240927_SW-KF_S2_sup_Slot2-40_1_8061_diatracer.750261.750261.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nFLLM[147]SMYNPSFAc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_sup_Slot2-40_1_8061_diatracer.750889.750889.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nVASSSSGNNFLSGSPc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_sup_Slot2-40_1_8061_diatracer.751534.751534.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nPPAAMGPGGGGGGALEDc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_sup_Slot2-40_1_8061_diatracer.751742.751742.2 [INFO:] Please specify modification and rerun PTMProphet ... ​ [INFO:] written 133000/189300 spectrum_queries [ERROR:] Cannot initialize for sequence: nLNDDALELDDC[160]AEc[61], unknown mods may exist in spectrum 20240927_SW-KF_S2_sup_Slot2-40_1_8061_diatracer.759249.759249.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nEYEALSDVNVTTSc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_sup_Slot2-40_1_8061_diatracer.760217.760217.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nHWLSDNRVLQGNQRVANESc[61], unknown mods may exist in spectrum 20240927_SW-KF_S2_sup_Slot2-40_1_8061_diatracer.760334.760334.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nVASSSSGNNFLSGSPc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_sup_Slot2-40_1_8061_diatracer.761609.761609.2 [INFO:] Please specify modification and rerun PTMProphet ... ​ [INFO:] written 134000/189300 spectrum_queries [ERROR:] Cannot initialize for sequence: nGFAQVAIDAKVALTGMAC[160]FHIc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_sup_Slot2-40_1_8061_diatracer.763533.763533.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nQVPVEEARSKAEEc[61], unknown mods may exist in spectrum 20240927_SW-KF_S2_sup_Slot2-40_1_8061_diatracer.764381.764381.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nAALVSGAVSINSC[160]PAAc[61], unknown mods may exist in spectrum 20240927_SW-KF_S2_sup_Slot2-40_1_8061_diatracer.765045.765045.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nYRTQSVQPQAQPEEITVAHSc[61], unknown mods may exist in spectrum 20240927_SW-KF_S2_sup_Slot2-40_1_8061_diatracer.767640.767640.3 [INFO:] Please specify modification and rerun PTMProphet ... ​ [INFO:] written 135000/189300 spectrum_queries [ERROR:] Cannot initialize for sequence: nQQC[160]LGAAKQGPVGNc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_sup_Slot2-40_1_8061_diatracer.770787.770787.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nAYQGFPHFVIYSc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_sup_Slot2-40_1_8061_diatracer.770852.770852.2 [INFO:] Please specify modification and rerun PTMProphet ... ​ [INFO:] written 136000/189300 spectrum_queries [ERROR:] Cannot initialize for sequence: nMPDVPMDLVDPSHVSGFTVSPc[61], unknown mods may exist in spectrum 20240927_SW-KF_S2_sup_Slot2-40_1_8061_diatracer.776374.776374.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nHWLSDNRVLQGNQRVANESc[61], unknown mods may exist in spectrum 20240927_SW-KF_S2_sup_Slot2-40_1_8061_diatracer.776459.776459.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nSPYHC[160]SFPMQGDAc[61], unknown mods may exist in spectrum 20240927_SW-KF_S2_sup_Slot2-40_1_8061_diatracer.777536.777536.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nVTGFVTEALQGVYNc[61], unknown mods may exist in spectrum 20240927_SW-KF_S2_sup_Slot2-40_1_8061_diatracer.777647.777647.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nPGAVAHSC[160]NSSTLGGc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_sup_Slot2-40_1_8061_diatracer.777784.777784.2 [INFO:] Please specify modification and rerun PTMProphet ... ​ [INFO:] written 137000/189300 spectrum_queries [ERROR:] Cannot initialize for sequence: nKDPQHSLSLHTKAMC[160]IPLNc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_sup_Slot2-40_1_8061_diatracer.780904.780904.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nMRFLPLSTQTTVKYAVYANc[61], unknown mods may exist in spectrum 20240927_SW-KF_S2_sup_Slot2-40_1_8061_diatracer.781967.781967.3 [INFO:] Please specify modification and rerun PTMProphet ... ​ [INFO:] written 138000/189300 spectrum_queries [ERROR:] Cannot initialize for sequence: nLIQLDDVTYHGFPSLQALAGGc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_sup_Slot2-40_1_8061_diatracer.787450.787450.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nVASSSSGNNFLSGSPc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_sup_Slot2-40_1_8061_diatracer.787816.787816.2 [INFO:] Please specify modification and rerun PTMProphet ... ​ [INFO:] written 139000/189300 spectrum_queries [ERROR:] Cannot initialize for sequence: nKKSNILISFPSIIYVFSLHc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_sup_Slot2-40_1_8061_diatracer.791332.791332.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nKAALDEAQGVGLDSTGc[61], unknown mods may exist in spectrum 20240927_SW-KF_S2_sup_Slot2-40_1_8061_diatracer.791965.791965.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nLTEASSSATYc[61], unknown mods may exist in spectrum 20240927_SW-KF_S2_sup_Slot2-40_1_8061_diatracer.793075.793075.2 [INFO:] Please specify modification and rerun PTMProphet ... ​ [INFO:] written 140000/189300 spectrum_queries [ERROR:] Cannot initialize for sequence: n[43]GPPPGHNAAMALSQYc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_sup_Slot2-40_1_8061_diatracer.796213.796213.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nYEYAGSC[160]Ic[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_sup_Slot2-40_1_8061_diatracer.796357.796357.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nLVTTVTEIAGc[61], unknown mods may exist in spectrum 20240927_SW-KF_S2_sup_Slot2-40_1_8061_diatracer.796669.796669.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nYVAFLGHLRSLGASGc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_sup_Slot2-40_1_8061_diatracer.798486.798486.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nANPQAC[160]RGSAc[61], unknown mods may exist in spectrum 20240927_SW-KF_S2_sup_Slot2-40_1_8061_diatracer.800158.800158.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nIEELNQSLAc[61], unknown mods may exist in spectrum 20240927_SW-KF_S2_sup_Slot2-40_1_8061_diatracer.801558.801558.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nDHLSPLSSSMPFWc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_sup_Slot2-40_1_8061_diatracer.801576.801576.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nDHLSPLSSSMPFWc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_sup_Slot2-40_1_8061_diatracer.801577.801577.3 [INFO:] Please specify modification and rerun PTMProphet ... ​ [INFO:] written 141000/189300 spectrum_queries [ERROR:] Cannot initialize for sequence: nYIPC[160]YQLFRM[147]Wc[61], unknown mods may exist in spectrum 20240927_SW-KF_S2_sup_Slot2-40_1_8061_diatracer.802952.802952.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nLTESVQTDAAc[61], unknown mods may exist in spectrum 20240927_SW-KF_S2_sup_Slot2-40_1_8061_diatracer.804580.804580.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nFSMVMNKAEVLEAAc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_sup_Slot2-40_1_8061_diatracer.804971.804971.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nVGDQGQQQGSc[61], unknown mods may exist in spectrum 20240927_SW-KF_S2_sup_Slot2-40_1_8061_diatracer.805314.805314.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nPGQDGAQAGALc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_sup_Slot2-40_1_8061_diatracer.806303.806303.2 [INFO:] Please specify modification and rerun PTMProphet ... ​ [INFO:] written 142000/189300 spectrum_queries [ERROR:] Cannot initialize for sequence: nSNGVC[160]ATISAc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_sup_Slot2-40_1_8061_diatracer.808251.808251.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nHEKVANGLLGDQGLPGVFVLc[61], unknown mods may exist in spectrum 20240927_SW-KF_S2_sup_Slot2-40_1_8061_diatracer.810390.810390.4 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nSTWSPTM[147]VVLHLDc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_sup_Slot2-40_1_8061_diatracer.810528.810528.3 [INFO:] Please specify modification and rerun PTMProphet ... ​ [INFO:] written 143000/189300 spectrum_queries [ERROR:] Cannot initialize for sequence: nQWSDANGGKc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_sup_Slot2-40_1_8061_diatracer.814342.814342.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nAFPANLGDGPSc[61], unknown mods may exist in spectrum 20240927_SW-KF_S2_sup_Slot2-40_1_8061_diatracer.816238.816238.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: n[43]GPPPGHNAAMALSQYc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_sup_Slot2-40_1_8061_diatracer.816361.816361.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nLDC[160]SPVYTGc[61], unknown mods may exist in spectrum 20240927_SW-KF_S2_sup_Slot2-40_1_8061_diatracer.817049.817049.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nDHLSPLSSSMPFWc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_sup_Slot2-40_1_8061_diatracer.817250.817250.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nLIEESSVDEc[61], unknown mods may exist in spectrum 20240927_SW-KF_S2_sup_Slot2-40_1_8061_diatracer.819567.819567.2 [INFO:] Please specify modification and rerun PTMProphet ... ​ [INFO:] written 144000/189300 spectrum_queries [ERROR:] Cannot initialize for sequence: nGPAVWSGPGAAGGGLGGRc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_sup_Slot2-40_1_8061_diatracer.820243.820243.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nIC[160]MIC[160]SVPGMMSFc[61], unknown mods may exist in spectrum 20240927_SW-KF_S2_sup_Slot2-40_1_8061_diatracer.821043.821043.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nGQSRGSQTQQPGRVC[160]GGQAGc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_sup_Slot2-40_1_8061_diatracer.823774.823774.4 [INFO:] Please specify modification and rerun PTMProphet ... ​ [INFO:] written 145000/189300 spectrum_queries [ERROR:] Cannot initialize for sequence: nFTPGTFTNQIQAAFc[61], unknown mods may exist in spectrum 20240927_SW-KF_S2_sup_Slot2-40_1_8061_diatracer.828324.828324.3 [INFO:] Please specify modification and rerun PTMProphet ... ​ [INFO:] written 146000/189300 spectrum_queries [ERROR:] Cannot initialize for sequence: nEFASSRQTDc[61], unknown mods may exist in spectrum 20240927_SW-KF_S2_sup_Slot2-40_1_8061_diatracer.833893.833893.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nHEAFESQTLVAVSSc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_sup_Slot2-40_1_8061_diatracer.835165.835165.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nNQAAMFSLDc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_sup_Slot2-40_1_8061_diatracer.836083.836083.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nGQSRGSQTQQPGRVC[160]GGQAGc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_sup_Slot2-40_1_8061_diatracer.837223.837223.4 [INFO:] Please specify modification and rerun PTMProphet ... ​ [INFO:] written 147000/189300 spectrum_queries [ERROR:] Cannot initialize for sequence: nPEGGGAPGAAQAc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_sup_Slot2-40_1_8061_diatracer.837707.837707.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nLVTTVTEIAGc[61], unknown mods may exist in spectrum 20240927_SW-KF_S2_sup_Slot2-40_1_8061_diatracer.839226.839226.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nNSNTVVFVKc[61], unknown mods may exist in spectrum 20240927_SW-KF_S2_sup_Slot2-40_1_8061_diatracer.839231.839231.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nLHALLMPPEc[61], unknown mods may exist in spectrum 20240927_SW-KF_S2_sup_Slot2-40_1_8061_diatracer.842106.842106.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nLAGWAEESGNGSSARAc[61], unknown mods may exist in spectrum 20240927_SW-KF_S2_sup_Slot2-40_1_8061_diatracer.842271.842271.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nLVIQSYFGKQILHc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_sup_Slot2-40_1_8061_diatracer.843321.843321.3 [INFO:] Please specify modification and rerun PTMProphet ... ​ [INFO:] written 149000/189300 spectrum_queries [ERROR:] Cannot initialize for sequence: nNENLAANFLLSQNFDDEc[61], unknown mods may exist in spectrum 20240927_SW-KF_S2_sup_Slot2-40_1_8061_diatracer.854679.854679.2 [INFO:] Please specify modification and rerun PTMProphet ... ​ [INFO:] written 150000/189300 spectrum_queries [ERROR:] Cannot initialize for sequence: nPPPEPAASLMLVPSLAGRQc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_sup_Slot2-40_1_8061_diatracer.856796.856796.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nPPPEPAASLMLVPSLAGRQc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_sup_Slot2-40_1_8061_diatracer.862762.862762.2 [INFO:] Please specify modification and rerun PTMProphet ... ​ [INFO:] written 151000/189300 spectrum_queries [ERROR:] Cannot initialize for sequence: nGEFSAAPDPGWPDC[160]FNSGc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_sup_Slot2-40_1_8061_diatracer.863113.863113.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nNENLAANFLLSQNFDDEc[61], unknown mods may exist in spectrum 20240927_SW-KF_S2_sup_Slot2-40_1_8061_diatracer.863196.863196.2 [INFO:] Please specify modification and rerun PTMProphet ... ​ [INFO:] written 152000/189300 spectrum_queries [ERROR:] Cannot initialize for sequence: nLLPEYHPGSFLDFc[61], unknown mods may exist in spectrum 20240927_SW-KF_S2_sup_Slot2-40_1_8061_diatracer.871931.871931.2 [INFO:] Please specify modification and rerun PTMProphet ... ​ [INFO:] written 153000/189300 spectrum_queries [ERROR:] Cannot initialize for sequence: nLTDLASQM[147]AEMQLAc[61], unknown mods may exist in spectrum 20240927_SW-KF_S2_sup_Slot2-40_1_8061_diatracer.875944.875944.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nIYSHLHSSAIWNPYLHLMGTc[61], unknown mods may exist in spectrum 20240927_SW-KF_S2_sup_Slot2-40_1_8061_diatracer.878172.878172.3 [INFO:] Please specify modification and rerun PTMProphet ... ​ [INFO:] written 154000/189300 spectrum_queries [ERROR:] Cannot initialize for sequence: nSRYM[147]ELYTYPPAc[61], unknown mods may exist in spectrum 20240927_SW-KF_S2_sup_Slot2-40_1_8061_diatracer.880354.880354.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nSRYM[147]ELYTYPPAc[61], unknown mods may exist in spectrum 20240927_SW-KF_S2_sup_Slot2-40_1_8061_diatracer.882282.882282.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nC[160]VIQLLQAEGAFWc[61], unknown mods may exist in spectrum 20240927_SW-KF_S2_sup_Slot2-40_1_8061_diatracer.883413.883413.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nGGSYSQAASSDSAQGSD[158]VSLTAC[160]c[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_sup_Slot2-40_1_8061_diatracer.884351.884351.3 [INFO:] Please specify modification and rerun PTMProphet ... ​ [INFO:] written 155000/189300 spectrum_queries [ERROR:] Cannot initialize for sequence: nGARTTRSGAGGGLGAMAPDLQLEAc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_sup_Slot2-40_1_8061_diatracer.888568.888568.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nLADGQLQQAQIWGAc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_sup_Slot2-40_1_8061_diatracer.889509.889509.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nFTPTFYAGFLPGSLGEATAAPSQc[61], unknown mods may exist in spectrum 20240927_SW-KF_S2_sup_Slot2-40_1_8061_diatracer.889525.889525.3 [INFO:] Please specify modification and rerun PTMProphet ... ​ [INFO:] written 156000/189300 spectrum_queries [ERROR:] Cannot initialize for sequence: nGEAQGSAASAAVAGTAAAc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_sup_Slot2-40_1_8061_diatracer.891742.891742.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nAGAQGVRIELINGAQLIRESGC[160]c[61], unknown mods may exist in spectrum 20240927_SW-KF_S2_sup_Slot2-40_1_8061_diatracer.892811.892811.3 [INFO:] Please specify modification and rerun PTMProphet ... ​ [INFO:] written 157000/189300 spectrum_queries [ERROR:] Cannot initialize for sequence: nC[160]GVLITGLPGDQNC[160]LLNAIM[147]Tc[61], unknown mods may exist in spectrum 20240927_SW-KF_S2_sup_Slot2-40_1_8061_diatracer.897748.897748.3 [INFO:] Please specify modification and rerun PTMProphet ... ​ [INFO:] written 158000/189300 spectrum_queries [ERROR:] Cannot initialize for sequence: nSRYM[147]ELYTYPPAc[61], unknown mods may exist in spectrum 20240927_SW-KF_S2_sup_Slot2-40_1_8061_diatracer.903473.903473.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nGAFADVTQVTSLWLAHNEVRTc[61], unknown mods may exist in spectrum 20240927_SW-KF_S2_sup_Slot2-40_1_8061_diatracer.904316.904316.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nQWQSELLQKYGLc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_sup_Slot2-40_1_8061_diatracer.904649.904649.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: n[43]DNAGVSFALIFAIIFGLIVM[147]WLYEDMAc[61], unknown mods may exist in spectrum 20240927_SW-KF_S2_sup_Slot2-40_1_8061_diatracer.905880.905880.4 [INFO:] Please specify modification and rerun PTMProphet ... ​ [INFO:] written 159000/189300 spectrum_queries [ERROR:] Cannot initialize for sequence: nLSAHSSQSGTLANEMDEPLHNc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_sup_Slot2-40_1_8061_diatracer.907210.907210.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nEIQEAIAVANASTMHc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_sup_Slot2-40_1_8061_diatracer.912238.912238.3 [INFO:] Please specify modification and rerun PTMProphet ... ​ [INFO:] written 160000/189300 spectrum_queries [ERROR:] Cannot initialize for sequence: nEVALVKDVRc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_sup_Slot2-40_1_8061_diatracer.912824.912824.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nVEQLGILDKc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_sup_Slot2-40_1_8061_diatracer.913928.913928.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nLSVISVEDPPc[61], unknown mods may exist in spectrum 20240927_SW-KF_S2_sup_Slot2-40_1_8061_diatracer.913980.913980.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nVTDTEYSEIKIHKc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_sup_Slot2-40_1_8061_diatracer.914083.914083.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nKDDENIPMETGNSPAc[61], unknown mods may exist in spectrum 20240927_SW-KF_S2_sup_Slot2-40_1_8061_diatracer.914212.914212.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nPNDFLSGDAAAc[61], unknown mods may exist in spectrum 20240927_SW-KF_S2_sup_Slot2-40_1_8061_diatracer.915120.915120.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nDLFLSTC[160]VTc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_sup_Slot2-40_1_8061_diatracer.916038.916038.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nTGAFAYPFLFDNLPc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_sup_Slot2-40_1_8061_diatracer.916657.916657.3 [INFO:] Please specify modification and rerun PTMProphet ... ​ [INFO:] written 161000/189300 spectrum_queries [ERROR:] Cannot initialize for sequence: nVGAPAVSGSEM[147]QPSHLAc[61], unknown mods may exist in spectrum 20240927_SW-KF_S2_sup_Slot2-40_1_8061_diatracer.918023.918023.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nDLQAVLC[160]PPc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_sup_Slot2-40_1_8061_diatracer.918559.918559.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nNIPKM[147]LFSSLFGSLc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_sup_Slot2-40_1_8061_diatracer.919154.919154.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nGVASLC[160]QLDNc[61], unknown mods may exist in spectrum 20240927_SW-KF_S2_sup_Slot2-40_1_8061_diatracer.919754.919754.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nLDELEEATKc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_sup_Slot2-40_1_8061_diatracer.920331.920331.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nELNGSDDALGVc[61], unknown mods may exist in spectrum 20240927_SW-KF_S2_sup_Slot2-40_1_8061_diatracer.920465.920465.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nYSPTTSHVGAc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_sup_Slot2-40_1_8061_diatracer.921472.921472.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nPPMGMRPPVMSQALPc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_sup_Slot2-40_1_8061_diatracer.922511.922511.3 [INFO:] Please specify modification and rerun PTMProphet ... ​ [INFO:] written 162000/189300 spectrum_queries [ERROR:] Cannot initialize for sequence: nANAQAAALYKc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_sup_Slot2-40_1_8061_diatracer.928541.928541.2 [INFO:] Please specify modification and rerun PTMProphet ... ​ [INFO:] written 163000/189300 spectrum_queries [ERROR:] Cannot initialize for sequence: nEAATLEWSQGc[61], unknown mods may exist in spectrum 20240927_SW-KF_S2_sup_Slot2-40_1_8061_diatracer.930050.930050.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nLQGLEDGAGAGPAENAASc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_sup_Slot2-40_1_8061_diatracer.930221.930221.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nPQASVLPATPSc[61], unknown mods may exist in spectrum 20240927_SW-KF_S2_sup_Slot2-40_1_8061_diatracer.931314.931314.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nFATSRWDTEQGSVDc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_sup_Slot2-40_1_8061_diatracer.931906.931906.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nQIAELGSLSLLALVALAVSRSc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_sup_Slot2-40_1_8061_diatracer.932825.932825.4 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nANAQAAALYKc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_sup_Slot2-40_1_8061_diatracer.933602.933602.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nIEQKEELDDVIALDc[61], unknown mods may exist in spectrum 20240927_SW-KF_S2_sup_Slot2-40_1_8061_diatracer.933837.933837.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nFLSALGIAHGGQNPGDSc[61], unknown mods may exist in spectrum 20240927_SW-KF_S2_sup_Slot2-40_1_8061_diatracer.934005.934005.3 [INFO:] Please specify modification and rerun PTMProphet ... ​ [INFO:] written 164000/189300 spectrum_queries [ERROR:] Cannot initialize for sequence: nYQTAGAQLC[160]c[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_sup_Slot2-40_1_8061_diatracer.935312.935312.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nFELGKLMELHGEGSSSGKATGc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_sup_Slot2-40_1_8061_diatracer.936099.936099.4 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nPIYINVIRDPIERc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_sup_Slot2-40_1_8061_diatracer.936642.936642.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nASAADC[160]LQHPWLNPc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_sup_Slot2-40_1_8061_diatracer.938278.938278.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nSLFGENLPELQIYAc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_sup_Slot2-40_1_8061_diatracer.938701.938701.3 [INFO:] Please specify modification and rerun PTMProphet ... ​ [INFO:] written 165000/189300 spectrum_queries [ERROR:] Cannot initialize for sequence: nMELQTLQEAc[61], unknown mods may exist in spectrum 20240927_SW-KF_S2_sup_Slot2-40_1_8061_diatracer.942756.942756.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nC[160]YVLAEVKEFGGEEc[61], unknown mods may exist in spectrum 20240927_SW-KF_S2_sup_Slot2-40_1_8061_diatracer.945275.945275.3 [INFO:] Please specify modification and rerun PTMProphet ... ​ [INFO:] written 166000/189300 spectrum_queries [ERROR:] Cannot initialize for sequence: n[43]MGIPGVKGQPc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_sup_Slot2-40_1_8061_diatracer.947718.947718.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nSAVAEAALAEAAc[61], unknown mods may exist in spectrum 20240927_SW-KF_S2_sup_Slot2-40_1_8061_diatracer.948173.948173.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nELNGSDDALGVc[61], unknown mods may exist in spectrum 20240927_SW-KF_S2_sup_Slot2-40_1_8061_diatracer.948821.948821.2 [INFO:] Please specify modification and rerun PTMProphet ... ​ [INFO:] written 167000/189300 spectrum_queries [ERROR:] Cannot initialize for sequence: nPEHVSSSSSSSc[61], unknown mods may exist in spectrum 20240927_SW-KF_S2_sup_Slot2-40_1_8061_diatracer.953457.953457.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nHAGAPGRSPAQLQHFc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_sup_Slot2-40_1_8061_diatracer.954409.954409.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nHIQVHGYRFHLAMc[61], unknown mods may exist in spectrum 20240927_SW-KF_S2_sup_Slot2-40_1_8061_diatracer.956481.956481.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nNESIWIHLGGQMGPLGKSIDc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_sup_Slot2-40_1_8061_diatracer.957603.957603.4 [INFO:] Please specify modification and rerun PTMProphet ... ​ [INFO:] written 168000/189300 spectrum_queries [ERROR:] Cannot initialize for sequence: nAQAAEDKQTEc[61], unknown mods may exist in spectrum 20240927_SW-KF_S2_sup_Slot2-40_1_8061_diatracer.958171.958171.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nMQDLKGAHRc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_sup_Slot2-40_1_8061_diatracer.958655.958655.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nTAGIAGWHGWc[61], unknown mods may exist in spectrum 20240927_SW-KF_S2_sup_Slot2-40_1_8061_diatracer.958774.958774.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nNLTVC[160]PDGALc[61], unknown mods may exist in spectrum 20240927_SW-KF_S2_sup_Slot2-40_1_8061_diatracer.959108.959108.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: n[43]MNVSVLSYFDSAGATc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_sup_Slot2-40_1_8061_diatracer.960141.960141.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nDGTLPLIITAQSSFVIFSLRc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_sup_Slot2-40_1_8061_diatracer.960684.960684.4 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nDLSDGSSGSGSAGc[61], unknown mods may exist in spectrum 20240927_SW-KF_S2_sup_Slot2-40_1_8061_diatracer.960874.960874.2 [INFO:] Please specify modification and rerun PTMProphet ... ​ [INFO:] written 169000/189300 spectrum_queries [ERROR:] Cannot initialize for sequence: nAGPSPTPc[61], unknown mods may exist in spectrum 20240927_SW-KF_S2_sup_Slot2-40_1_8061_diatracer.963450.963450.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nWISWSDTAVSNVTESM[147]LAc[61], unknown mods may exist in spectrum 20240927_SW-KF_S2_sup_Slot2-40_1_8061_diatracer.964908.964908.2 [INFO:] Please specify modification and rerun PTMProphet ... ​ [INFO:] written 170000/189300 spectrum_queries [ERROR:] Cannot initialize for sequence: nATFFFD[158]EADEELSSYGSSc[61], unknown mods may exist in spectrum 20240927_SW-KF_S2_sup_Slot2-40_1_8061_diatracer.974639.974639.2 [INFO:] Please specify modification and rerun PTMProphet ... ​ [INFO:] written 172000/189300 spectrum_queries [ERROR:] Cannot initialize for sequence: nPKVSSTAHARHFTAc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_sup_Slot2-40_1_8061_diatracer.984829.984829.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nINEAFIEMATTEDAc[61], unknown mods may exist in spectrum 20240927_SW-KF_S2_sup_Slot2-40_1_8061_diatracer.986668.986668.2 [INFO:] Please specify modification and rerun PTMProphet ... ​ [INFO:] written 173000/189300 spectrum_queries [ERROR:] Cannot initialize for sequence: nVPC[160]SGPWHQVC[160]GRc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_sup_Slot2-40_1_8061_diatracer.987783.987783.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nQTGGPTLQSLLLLVTLTLLLLKc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_sup_Slot2-40_1_8061_diatracer.989275.989275.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nPKVSSTAHARHFTAc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_sup_Slot2-40_1_8061_diatracer.992159.992159.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nQLEPSRISPFPMGPc[61], unknown mods may exist in spectrum 20240927_SW-KF_S2_sup_Slot2-40_1_8061_diatracer.992223.992223.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nNVVSGVLFGTGLWVAc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_sup_Slot2-40_1_8061_diatracer.992543.992543.2 [INFO:] Please specify modification and rerun PTMProphet ... ​ [INFO:] written 174000/189300 spectrum_queries [ERROR:] Cannot initialize for sequence: nEANVPSVPALSEESVc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_sup_Slot2-40_1_8061_diatracer.993151.993151.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nFVTASILLC[160]FLLRC[160]SSAGKSEc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_sup_Slot2-40_1_8061_diatracer.995554.995554.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nC[160]SLIGYGGRAEAGVAAc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_sup_Slot2-40_1_8061_diatracer.997525.997525.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nATAGEPSPHGQVSSPPc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_sup_Slot2-40_1_8061_diatracer.997973.997973.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nIFVSGNSNEC[160]LQNSc[61], unknown mods may exist in spectrum 20240927_SW-KF_S2_sup_Slot2-40_1_8061_diatracer.998349.998349.2 [INFO:] Please specify modification and rerun PTMProphet ... ​ [INFO:] written 175000/189300 spectrum_queries [ERROR:] Cannot initialize for sequence: nSPSAAGAAVLDALEEQGGLQSLFC[160]c[61], unknown mods may exist in spectrum 20240927_SW-KF_S2_sup_Slot2-40_1_8061_diatracer.998534.998534.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nLAATNALLNSLE[172]FTc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_sup_Slot2-40_1_8061_diatracer.999925.999925.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nAITIAGIPQSIIE[172]C[160]c[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_sup_Slot2-40_1_8061_diatracer.1003844.1003844.2 [INFO:] Please specify modification and rerun PTMProphet ... ​ [INFO:] written 176000/189300 spectrum_queries [ERROR:] Cannot initialize for sequence: nEQGGGRSGGAGSGGGNLTc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_sup_Slot2-40_1_8061_diatracer.1005335.1005335.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nGTIRTPMAAAAFAEKc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_sup_Slot2-40_1_8061_diatracer.1005802.1005802.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nEDISALKLQNLAESTDDLTLDDQLESLPDc[61], unknown mods may exist in spectrum 20240927_SW-KF_S2_sup_Slot2-40_1_8061_diatracer.1005845.1005845.4 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nPKVSSTAHARHFTAc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_sup_Slot2-40_1_8061_diatracer.1006832.1006832.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nATAGEPSPHGQVSSPPc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_sup_Slot2-40_1_8061_diatracer.1008969.1008969.2 [INFO:] Please specify modification and rerun PTMProphet ... ​ [INFO:] written 177000/189300 spectrum_queries [ERROR:] Cannot initialize for sequence: nAVTEGAQAVEEPSIC[160]c[61], unknown mods may exist in spectrum 20240927_SW-KF_S2_sup_Slot2-40_1_8061_diatracer.1010772.1010772.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nQTFTGHESDINAIC[160]c[61], unknown mods may exist in spectrum 20240927_SW-KF_S2_sup_Slot2-40_1_8061_diatracer.1011993.1011993.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nM[147]ADLPRELFPWEc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_sup_Slot2-40_1_8061_diatracer.1012613.1012613.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nSFYPEEVSSMVLTKMKEIAEc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_sup_Slot2-40_1_8061_diatracer.1012751.1012751.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nNNALAPPSDTMDMSLNQSQLDDc[61], unknown mods may exist in spectrum 20240927_SW-KF_S2_sup_Slot2-40_1_8061_diatracer.1012940.1012940.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nGPAAAAAAAAAAAEGGRELc[61], unknown mods may exist in spectrum 20240927_SW-KF_S2_sup_Slot2-40_1_8061_diatracer.1013974.1013974.2 [INFO:] Please specify modification and rerun PTMProphet ... ​ [INFO:] written 178000/189300 spectrum_queries [ERROR:] Cannot initialize for sequence: nATAGEPSPHGQVSSPPc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_sup_Slot2-40_1_8061_diatracer.1019961.1019961.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nVEDESELEVFAEGSc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_sup_Slot2-40_1_8061_diatracer.1020762.1020762.2 [INFO:] Please specify modification and rerun PTMProphet ... ​ [INFO:] written 179000/189300 spectrum_queries [ERROR:] Cannot initialize for sequence: nAVTEGAQAVEEPSIC[160]c[61], unknown mods may exist in spectrum 20240927_SW-KF_S2_sup_Slot2-40_1_8061_diatracer.1021766.1021766.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nEPATTLPTAQWSC[160]Lc[61], unknown mods may exist in spectrum 20240927_SW-KF_S2_sup_Slot2-40_1_8061_diatracer.1022415.1022415.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nC[160]VAHAAGC[160]WAc[61], unknown mods may exist in spectrum 20240927_SW-KF_S2_sup_Slot2-40_1_8061_diatracer.1023405.1023405.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nQRIHQQAETQGIVQc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_sup_Slot2-40_1_8061_diatracer.1023487.1023487.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nTTGIVMDSGDGVTHTVPc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_sup_Slot2-40_1_8061_diatracer.1025274.1025274.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nQHGVGGAFGC[160]Rc[61], unknown mods may exist in spectrum 20240927_SW-KF_S2_sup_Slot2-40_1_8061_diatracer.1025454.1025454.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nDEGPPTPSSATc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_sup_Slot2-40_1_8061_diatracer.1025789.1025789.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nLYWLLGFDSFFSEAc[61], unknown mods may exist in spectrum 20240927_SW-KF_S2_sup_Slot2-40_1_8061_diatracer.1026680.1026680.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nVKEMNTQAYc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_sup_Slot2-40_1_8061_diatracer.1026918.1026918.2 [INFO:] Please specify modification and rerun PTMProphet ... ​ [INFO:] written 180000/189300 spectrum_queries [ERROR:] Cannot initialize for sequence: nLD[202]ENVHTDNc[61], unknown mods may exist in spectrum 20240927_SW-KF_S2_sup_Slot2-40_1_8061_diatracer.1030042.1030042.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nILAHLTGTEFc[61], unknown mods may exist in spectrum 20240927_SW-KF_S2_sup_Slot2-40_1_8061_diatracer.1030846.1030846.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nSELLMIIQMc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_sup_Slot2-40_1_8061_diatracer.1031678.1031678.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nTMEDVIAEQSVSGYFc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_sup_Slot2-40_1_8061_diatracer.1032275.1032275.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nMRFQEAAKEEAQNKc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_sup_Slot2-40_1_8061_diatracer.1032295.1032295.3 [INFO:] Please specify modification and rerun PTMProphet ... ​ [INFO:] written 181000/189300 spectrum_queries [ERROR:] Cannot initialize for sequence: nTAVYPVAQAQGc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_sup_Slot2-40_1_8061_diatracer.1032888.1032888.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nLNLDM[147]ILSLFLNDIc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_sup_Slot2-40_1_8061_diatracer.1034103.1034103.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nNLVSLDGVFLc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_sup_Slot2-40_1_8061_diatracer.1034215.1034215.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nYLQLDAARLc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_sup_Slot2-40_1_8061_diatracer.1035829.1035829.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nEVDMWSTGVIM[147]YTLc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_sup_Slot2-40_1_8061_diatracer.1036376.1036376.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nRNQETQQDDc[61], unknown mods may exist in spectrum 20240927_SW-KF_S2_sup_Slot2-40_1_8061_diatracer.1037169.1037169.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nAYAPGGPAYQPVVEAFc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_sup_Slot2-40_1_8061_diatracer.1038338.1038338.3 [INFO:] Please specify modification and rerun PTMProphet ... ​ [INFO:] written 182000/189300 spectrum_queries [ERROR:] Cannot initialize for sequence: nLDDLHTLYHKKSYc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_sup_Slot2-40_1_8061_diatracer.1040801.1040801.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nEGADTSLDWESYDNNISVQAc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_sup_Slot2-40_1_8061_diatracer.1043070.1043070.4 [INFO:] Please specify modification and rerun PTMProphet ... ​ [INFO:] written 183000/189300 spectrum_queries [ERROR:] Cannot initialize for sequence: nISAAAAATAAAAAAc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_sup_Slot2-40_1_8061_diatracer.1045243.1045243.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nSGAGPGAAAAAAGPGc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_sup_Slot2-40_1_8061_diatracer.1046768.1046768.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nEM[147]AQGLVSGGAQLLGLLLM[147]GAAAAc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_sup_Slot2-40_1_8061_diatracer.1047176.1047176.4 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nLD[202]ENVHTDNc[61], unknown mods may exist in spectrum 20240927_SW-KF_S2_sup_Slot2-40_1_8061_diatracer.1047343.1047343.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nQFEVDEQPNLSLIPGAPGSFTAc[61], unknown mods may exist in spectrum 20240927_SW-KF_S2_sup_Slot2-40_1_8061_diatracer.1049609.1049609.4 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nKSLELAFQNISTALSDc[61], unknown mods may exist in spectrum 20240927_SW-KF_S2_sup_Slot2-40_1_8061_diatracer.1049784.1049784.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nLD[202]ENVHTDNc[61], unknown mods may exist in spectrum 20240927_SW-KF_S2_sup_Slot2-40_1_8061_diatracer.1049812.1049812.2 [INFO:] Please specify modification and rerun PTMProphet ... ​ [INFO:] written 184000/189300 spectrum_queries [ERROR:] Cannot initialize for sequence: nEPAGVGAETGPVc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_sup_Slot2-40_1_8061_diatracer.1051565.1051565.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nKSLELAFQNISTALSDc[61], unknown mods may exist in spectrum 20240927_SW-KF_S2_sup_Slot2-40_1_8061_diatracer.1052246.1052246.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nKSDLPDGAGSSAc[61], unknown mods may exist in spectrum 20240927_SW-KF_S2_sup_Slot2-40_1_8061_diatracer.1052904.1052904.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nILAHLTGTEFc[61], unknown mods may exist in spectrum 20240927_SW-KF_S2_sup_Slot2-40_1_8061_diatracer.1053079.1053079.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nNLLDEAKGALDVFWSc[61], unknown mods may exist in spectrum 20240927_SW-KF_S2_sup_Slot2-40_1_8061_diatracer.1053096.1053096.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nPSIM[147]YATPVEc[61], unknown mods may exist in spectrum 20240927_SW-KF_S2_sup_Slot2-40_1_8061_diatracer.1054082.1054082.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nELVEEFPIEc[61], unknown mods may exist in spectrum 20240927_SW-KF_S2_sup_Slot2-40_1_8061_diatracer.1055472.1055472.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nLPGEMEKQKc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_sup_Slot2-40_1_8061_diatracer.1055680.1055680.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nFEELENTDDc[61], unknown mods may exist in spectrum 20240927_SW-KF_S2_sup_Slot2-40_1_8061_diatracer.1055752.1055752.2 [INFO:] Please specify modification and rerun PTMProphet ... ​ [INFO:] written 185000/189300 spectrum_queries [ERROR:] Cannot initialize for sequence: nLGEHAIFQSPSMDVFc[61], unknown mods may exist in spectrum 20240927_SW-KF_S2_sup_Slot2-40_1_8061_diatracer.1058004.1058004.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nC[160]QFGAEIITAESYSLc[61], unknown mods may exist in spectrum 20240927_SW-KF_S2_sup_Slot2-40_1_8061_diatracer.1058438.1058438.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nKSLELAFQNISTALSDc[61], unknown mods may exist in spectrum 20240927_SW-KF_S2_sup_Slot2-40_1_8061_diatracer.1059667.1059667.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nIDRNQALLVPALASGIc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_sup_Slot2-40_1_8061_diatracer.1061014.1061014.3 [INFO:] Please specify modification and rerun PTMProphet ... ​ [INFO:] written 186000/189300 spectrum_queries [ERROR:] Cannot initialize for sequence: nQGTSLGWGGAQc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_sup_Slot2-40_1_8061_diatracer.1063058.1063058.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nNMTIPEDILGEIAVSMc[61], unknown mods may exist in spectrum 20240927_SW-KF_S2_sup_Slot2-40_1_8061_diatracer.1064950.1064950.3 [INFO:] Please specify modification and rerun PTMProphet ... ​ [INFO:] written 187000/189300 spectrum_queries [ERROR:] Cannot initialize for sequence: nFILALVEEPLGEGPEAc[61], unknown mods may exist in spectrum 20240927_SW-KF_S2_sup_Slot2-40_1_8061_diatracer.1067957.1067957.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: n[43]MYGAVNEYPc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_sup_Slot2-40_1_8061_diatracer.1068901.1068901.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nLPGEMEKQKc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_sup_Slot2-40_1_8061_diatracer.1070491.1070491.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nASNGQIGTQHSc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_sup_Slot2-40_1_8061_diatracer.1072075.1072075.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nTVGILPSNC[160]SDIWQVc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_sup_Slot2-40_1_8061_diatracer.1072297.1072297.3 [INFO:] Please specify modification and rerun PTMProphet ... ​ [INFO:] written 188000/189300 spectrum_queries [ERROR:] Cannot initialize for sequence: nLNDPDASASDTRLFRc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_sup_Slot2-40_1_8061_diatracer.1074235.1074235.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nQVGAQGVSRSEM[147]MELSRPPGPc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_sup_Slot2-40_1_8061_diatracer.1075816.1075816.4 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nGEQILLSDNAASLAVQc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_sup_Slot2-40_1_8061_diatracer.1077924.1077924.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nENLELNGSILSGQPSSc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_sup_Slot2-40_1_8061_diatracer.1078226.1078226.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nGM[147]QAAREGSHSVTASALc[61], unknown mods may exist in spectrum 20240927_SW-KF_S2_sup_Slot2-40_1_8061_diatracer.1078260.1078260.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nPVGEQNFNSEc[61], unknown mods may exist in spectrum 20240927_SW-KF_S2_sup_Slot2-40_1_8061_diatracer.1078402.1078402.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nESLGLESKDGSc[61], unknown mods may exist in spectrum 20240927_SW-KF_S2_sup_Slot2-40_1_8061_diatracer.1078425.1078425.2 [INFO:] Please specify modification and rerun PTMProphet ... ​ [INFO:] written 189000/189300 spectrum_queries [ERROR:] Cannot initialize for sequence: nENQLINIADDc[61], unknown mods may exist in spectrum 20240927_SW-KF_S2_sup_Slot2-40_1_8061_diatracer.1079709.1079709.2 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nC[160]RPNADLELNDVIGLc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_sup_Slot2-40_1_8061_diatracer.1079890.1079890.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nPEELLELLGGSHDLDSNQAAMVc[61], unknown mods may exist in spectrum 20240927_SW-KF_S2_sup_Slot2-40_1_8061_diatracer.1079970.1079970.4 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nMKLPGYLM[147]Gc[105], unknown mods may exist in spectrum 20240927_SW-KF_S2_sup_Slot2-40_1_8061_diatracer.1080830.1080830.3 [INFO:] Please specify modification and rerun PTMProphet ... [ERROR:] Cannot initialize for sequence: nRGLALNGc[61], unknown mods may exist in spectrum 20240927_SW-KF_S2_sup_Slot2-40_1_8061_diatracer.1080926.1080926.2 [INFO:] Please specify modification and rerun PTMProphet ... [INFO:] done ... [INFO:] Writing file interact-20240927_SW-KF_S2_sup_Slot2-40_1_8061_diatracer.mod.pep.xml ... [INFO:] done ... Process 'PTMProphet' finished, exit code: 0 ProteinProphet [Work dir: D:\20240927_SW-KF\PLD_method\output] C:\Users\dubia\OneDrive\Desktop\FragPipe-jre-22.0\fragpipe\tools\Philosopher\philosopher-v5.1.1.exe proteinprophet --maxppmdiff 2000000 --output combined D:\20240927_SW-KF\PLD_method\output\filelist_proteinprophet.txt time="06:02:59" level=info msg="Executing ProteinProphet v5.1.1" ProteinProphet (C++) by Insilicos LLC and LabKey Software, after the original Perl by A. Keller (TPP v6.0.0-rc15 Noctilucent, Build 202105101442-exported (Windows_NT-x86_64)) (no FPKM) (no groups) (using degen pep info) Reading in D:\20240927_SW-KF\PLD_method\output\interact-20240927_SW-KF_S1_PLD_Slot2-38_1_8058_diatracer.pep.xml... ...read in 17 1+, 48042 2+, 29515 3+, 4624 4+, 0 5+, 0 6+, 0 7+ spectra with min prob 0.05 Reading in D:\20240927_SW-KF\PLD_method\output\interact-20240927_SW-KF_S1_sup_Slot2-37_1_8056_diatracer.pep.xml... ...read in 49 1+, 107464 2+, 67105 3+, 12133 4+, 0 5+, 0 6+, 0 7+ spectra with min prob 0.05 Reading in D:\20240927_SW-KF\PLD_method\output\interact-20240927_SW-KF_S1_total_Slot2-36_1_8055_diatracer.pep.xml... ...read in 53 1+, 112450 2+, 70096 3+, 12904 4+, 0 5+, 0 6+, 0 7+ spectra with min prob 0.05 Reading in D:\20240927_SW-KF\PLD_method\output\interact-20240927_SW-KF_S2_PLD_Slot2-41_1_8063_diatracer.pep.xml... ...read in 13 1+, 31475 2+, 12417 3+, 1031 4+, 0 5+, 0 6+, 0 7+ spectra with min prob 0.05 Reading in D:\20240927_SW-KF\PLD_method\output\interact-20240927_SW-KF_S2_sup_Slot2-40_1_8061_diatracer.pep.xml... ...read in 71 1+, 106323 2+, 70613 3+, 12293 4+, 0 5+, 0 6+, 0 7+ spectra with min prob 0.05 Reading in D:\20240927_SW-KF\PLD_method\output\interact-20240927_SW-KF_S2_total_Slot2-39_1_8060_diatracer.pep.xml... ...read in 70 1+, 112627 2+, 73854 3+, 12754 4+, 0 5+, 0 6+, 0 7+ spectra with min prob 0.05 Initializing 165255 peptide weights: 0%...10%...20%...30%...40%...50%...60%...70%...80%...90%...100% Calculating protein lengths and molecular weights from database D:\20240927_SW-KF\sequence\2024-10-03-decoys-contam-UP000005640.fas .........:.........:.........:.........:.........:.........:.........:.........:.........:.........1000 .........:.........:.........:.........:.........:.........:.........:.........:.........:.........2000 .........:.........:.........:.........:.........:.........:.........:.........:.........:.........3000 .........:.........:.........:.........:.........:.........:.....WARNING: Found the following zero-mass residues in protein entry rev_sp|P07203|GPX1_HUMAN : U MACSPGQSLLAEIDPEIDITQFRRSYRRLPVGDPGVLFKEFNWAVDNRCVPSWTILKPDTMLATADDSPAPLAERLFAFLPHAGAGNVECKEFLMFNPEFGGGPRVYKLSNLIEENKANEQHGFQNCPFGLVVLGRPGLRRQLENMQTYDRVTTGULSAVNEILLVKGRLSGLSVPEGGALPRASFAYVSQAAAAAAALRAAC ....:.........:.........:.........4000 .........:.........:.........:.........:.........:.........:.........:.....WARNING: Found the following zero-mass residues in protein entry rev_sp|P18283|GPX2_HUMAN : U MIAVKLLRKIDPEINITPFTRSYRRFPEGEPGILFKEFNWAVDSRRVPSWIILKPDTMLSFPDDYPYPLKDKLYAFVPHENQGNVECKQVLTFTPQYGGGPRVYKLSNLIEENQCNEQHGFQNCPFGLVVLRRPFRCQLENLQTFDRTTTGULSAVNEILVARGRFTNFDVKEGDLSIASLDYFSKAIFA ....:.........:.........5000 .........:.........:.........:.........:.........:.........:......WARNING: Found the following zero-mass residues in protein entry rev_sp|P36969|GPX4_HUMAN : U MFYHPLDKEIVLPEEMPGYRKVVCGNKDILFKTFNWKIANGLIGKGKPQIKMWKWLPHADDGNVCIKSFMDFKVNYGAAFEKIEENSGPEQKGFQNCPAFLIRLGCEAYRAHLDVLQTYNVETKGUQSAVNTVICVFGRYKDLNVMHGDIDKASFEHMSRACRWDDRSACMTGALGPAALAGCLLAPKLLRCLRGLS ...:.........:.........:.........6000 .........:.........WARNING: Found the following zero-mass residues in protein entry rev_sp|P49908|SEPP1_HUMAN : UUUUUUUUUU MNSPUEUKKAQNKURUSASAETPILQQSIQUAAPPLRUQCSETINEEARLGQUSCLSPLNEKCQUTIASGTKEFILHRCHCCUSRPALESDTPLKCLLQNICRKRCLKKQLDQLDESAPMDRNEPHGQRHQGKHKHHHHLGPPAPHTPANPAGPQQNESLESSGLHQHGHNHHHEHHYHPSPTEVTKDVTLASVRKCFDEDKLTTLSCNGCKKECYAIKIAEEVYPFTLFSFPLGLHYVLRGCRDYILFDDKSGNLLTWVDTQNEEQQYVPIHESVKNKLHTYKLRSSIGQHNVVIYSINSYGEKKLKVRLDELKSAQLICLYUSAQLLAVVTVSGNSNLMPDQDRISWAPPQKCLSSQDQSETGGSPLLCLALALGLSRW :.........:.........:.........:.........:.........:.........:.........:.......WARNING: Found the following zero-mass residues in protein entry rev_sp|P62341|SELT_HUMAN : U MSRHHPISDMHVNLKMENDLIQVLQQMSPLHGSELKSWVPVDNLTIEFAGTSMCQNEIMNSLFFVMMCAYVKNEQGWQWISPAQMGFFAFPDKGVIIGLILVLKFVSLFSAIHRYIPQPLYNEGEIRIDPYRQSIVRMYEEFVRRYGUSVCIQFKLLPGTAYQMKLRKSPVGGLNASAESRVMASAAVLLLLLLR ..7000 .......WARNING: Found the following zero-mass residues in protein entry rev_sp|P63302|SELW_HUMAN : U MGQALAAKIAAVLKLFKSETDVYGDGKKKSHILKGAVMVEFFGATQPTGEGCIDLRGPFEDELKKKLQLYKSKYGUAGCYVVRVALA ..:.........:.........:.........:.........:.........:.........:.........:.........:.........8000 .........:.........:.........:.........:.........:.........:.........:.........:.........:.........9000 .........:.........:.........:.........:.........:.........:.........:.........:.........:.........10000 .........:.........:.........:.........:.........:.........:.........:.........:.........:.........11000 .........:.........:.........:.........:.........:.........:.........:.........:.........:.WARNING: Found the following zero-mass residues in protein entry rev_sp|Q86VQ6|TRXR3_HUMAN : U MGUCGKQTIDLGSSKTIELTTFVEGCTPHIGITDDLLQKTLGCKMAAAFGQTVEGANPGLIHFGIVRDHDFKNCIIKAYCTNNERGAVTWELPWFLTHYIELNEKKYVEIAKEESLGCCGYELPTFVTTPVNIYDCKELSAGFLRQALLKGSQIAVPTLEPKDELIDGVAYVYPVNTQEVDNVPIKGSKENIKVGIKELGIKRTCSDRGIALLVTNYVGEITETGETSKALVKLKGPSGKELQQVMVPIFKRLFKVGHQEMYSGVKEAMEQDFGRLLISRVMVTVDLGFGALFGACELAVYSAGVVLTKGPCYPLSFLDDSITCYEKDGQIGLYRPREGTAIVFQAATYYTEQGKKNTAKIKHHEVFEGYSNVYAVAKERLSLRYGWNLSSIHNQIAKTMTEWNHRVQQNYEWGFKRSDCLAQGLLAAQHMLKKPICGVNVCTGGLGWSTGQPSPVVFDLVMVKKGLIAAEKACSLGGSGGGIIILDYDYALDEQLLKQLLGSQYAQFTQDCGGVHVKNVFINPVTKQNTIESLVEQVRAGDDVQDLELVNCEVGLSSFLEKVRTSHPCYSKSFIVVRSREILGVLHRRLEERAESSRSPGPSSLRARRGPPSLVRAGRVHGSRRNPADGAKGPGPSQPPSRE ........12000 .........:.........:.........:.........:.........:.........:.........:.........:.........:.........13000 .........:.........:.........:.........:.........:.........:.........:.........:.........:.........14000 .........:.........:.........:.........:.........:.........:.........:.........:.........:.........15000 .........:.........:.........:.........:.........:.........:.........:.........:.........:.........16000 .........:.........:.........:.........:.........:.........:.WARNING: Found the following zero-mass residues in protein entry rev_sp|Q9BVL4|SELO_HUMAN : U MSSUTVCLEAAWLPPKSSYSRQRGDAGDAETAEADTAAGAECHYPTELLKLVRRVESFDGREAAEIANQAIYNRLVYKPNNAHMVRVHEAQWAAADGAGELDKDLRARYAQLWDAWHGQNRSQLEAASLQELRSQQEVRELERAIGARTGMLAFLQPNSQALMLMMSLQRPDMQPRFALRLEELSACQEMLRALFEALGPSELEVPFSSLLYFTNTFDAGTLHMTELLKSVLAGDEELEVQVLGLKRRMKQLYHRQFEADFEEALIAEGLELPLEPQLAEALKRLNWRCVEPQKSYAYRGTNDSANCVHDPDYRDLFGFPGYDITLGLISMNDTLNVGHCFGVCQWEAVMRATRRTVERFFAANRQVSDSAHAAQIEPYFSSIVYDLLQVRIDNRGVSPGARGTHEDASKFIEFSGFRIFTSAVRLVVTCQEYKPNGDYFVDRVVTSESTVCAGARTTPVGLHFMAESCLFERISSRLVKRGDAQRSFPTPGAGKLQLEWREGTATCVEGLYMAAGDGLQGAFQGFQHGCYCHAAPEAGPLLANGSFFLAAEAEAERAPPAGLGLLALAPESLAVLRPQRLPTPQVRTFCAGPVPRPASPAGEPGPPPAEVPLARLARNDFRLGALWRPAPEMAAGSLTSRPAPSPSCRGLPLLRAAALSAGLAARYVA ........:.........:.........:.........17000 .........:.........:.........:.........:.........:.........:.........:.........:.........:.........18000 .........:.........:.........:.........:.........:.........:.........:.........:.WARNING: Found the following zero-mass residues in protein entry rev_sp|Q9NZV5|SELN_HUMAN : UU MPQLLPLGRRLGEKLFQMYTATSPDEFTSSFSFLNSEIEEPKVSTIDLFYNANIHHVVTGNPLCIMMEVPFSYKELHLGALKQHSSNEQNNQLEELEKVLSWTSIFSENLLTLIPSSELVTERLTRGSGUCSQDDLAGWLLISHVLKNEAKARDFAETFPLYSVKKFPYMAVELRRAAEEWSLEQQWKIEEFVFQLPEGSPLHSDIMSGDEDLIVSPVSPGTAELEMQPIYGIDVEMNSSESAGYLWEMDVNLSRHNPVFLRFDRVHTADKSLIIHGTFQAPSFWFPFDPPESLQFEAHIRFMVTYYFDSIATLCAVAGQPAFRTKVFPRPHFMSLLRHIIVEKGKPPPPYFRNNSLYGTFMSLESPIIWWPEGLEQGPPPLFPQFHRTAFVASPSAAATWNRLGSLALRSVGLFGDKSKTMTEPLLPQFRAEITLTEESPDPPLEEEECSAAPTSRLLSLCSSUNLWPLQPQLSSHSCWQVGTQTVSCSGTLKEAIPKFEEPSIYMDGDTDLSSFLFLGDTGLTKLALEQRAAAQAEAHRACVRVAAAAAAALLAGLLALSRARRRPPAPPQAAPGPSPPGRQGPRARG ........:.........19000 .........:.........:.........:.........:.........:.........:.........:.........:.........:.........20000 .........:.........:.........:.........:.........:.........:.........:.........:.........:.........21000 .........:.........:.........:.........:.........:.........:.........:.........:.........:.........22000 .........:.........:.........:.........:.........:.........:.........:.........:.........:.........23000 .........:.........:.........:.........:.........:.........:.........:.........:.........:.........24000 .........:.........:.........:.........:.........:.........:.........:.........:.........:.........25000 .........:.........:.........:.........:.........:.........:.........:.........:.........:.........26000 .........:.........:.........:.........:.........:.........:.........:.........:.........:.........27000 .........:.........:.........:.........:.........:.........:.........:.........:.........:.........28000 .........:.........:.........:.........:.........:.........:.........:.........:.........:.........29000 .........:.........:.........:.........:.........:.........:.........:.........:.........:.........30000 .........:.........:.........:.........:.........:.........:.........:.........:.........:.........31000 .........:.........:.........:.........:.........:.........:.........:.........:.........:.........32000 .........:.........:.........:.........:.........:.........:.........:.........:.........:.........33000 .........:.........:.........:.........:.........:.........:.........:.........:.........:.........34000 .........:.........:.........:.........:.........:.........:.........:.........:.........:.........35000 .........:.........:.........:.........:.........:.........:.........:.........:.........:.........36000 .........:.........:.........:.........:.........:.........:.........:.........:.........:.........37000 .........:.........:.........:.........:.........:.........:.........:.........:.........:.........38000 .........:.........:.........:.........:.........:.........:.........:.........:.........:.........39000 .........:.........:.........:.........:.........:.........:.........:.........:.........:.........40000 .........:.........:.........:.........:.........:.........:.........:.........:.........:.........41000 .........:.........:.........:.........:.........:.........:.........:.........:.........:.........42000 .........:.........:.........:.........:.........:.........:.........:.........:.........:.........43000 .........:.........:.........:.........:.........:.........:.........:.........:.........:.........44000 .........:.........:.........:.........:.........:.........:.........:.........:.........:.........45000 .........:.........:.........:.........:.........:.........:.........:.........:.........:.........46000 .........:.........:.........:.........:.........:.........:.........:.........:.........:.........47000 .........:.........:.........:.........:.........:.........:.........:.........:.........:.........48000 .........:.........:.........:.........:.........:.........:.........:.........:.........:.........49000 .........:.........:.........:.........:.........:.........:.........:.........:.........:.........50000 .........:.........:.........:.........:.........:.........:.........:.........:.........:.........51000 .........:.........:.........:.........:.........:.........:.........:.........:.........:.........52000 .........:.........:.........:.........:.........:.........:.........:.........:.........:.........53000 .........:.........:.........:.........:.........:.........:.........:.........:.........:.........54000 .........:.........:.........:.........:.........:.........:.........:.........:.........:.........55000 .........:.........:.........:.........:.........:.........:.........:.........:.........:.........56000 .........:.........:.........:.........:.........:.........:.........:.........:.........:.........57000 .........:.........:.........:.........:.........:.........:.........:.........:.........:.........58000 .........:.........:.........:.........:.........:.........:.........:.........:.........:.........59000 .........:.........:.........:.........:.........:.........:.........:.........:.........:.........60000 .........:.........:.........:.........:.........:.........:.........:.........:.........:.........61000 .........:.........:.........:.........:.........:.........:.........:.........:.........:.........62000 .........:.........:.........:.........:.........:.........:.........:.........:.........:.........63000 .........:.........:.........:.........:.........:.........:.........:.........:.........:.........64000 .........:.........:.........:.........:.........:.........:.........:.........:.........:.........65000 .........:.........:.........:.........:.........:.........:.........:.........:.........:.........66000 .........:.........:.........:.........:.........:.........:.........:.........:.........:.........67000 .........:.........:.........:.........:.........:.........:.........:.........:.........:.........68000 .........:.........:.........:.........:.........:.........:.........:.........:.........:.........69000 .........:.........:.........:.........:.........:.........:.........:.........:.........:.........70000 .........:.........:.........:.........:.........:.........:.........:.........:.........:.........71000 .........:.........:.........:.........:.........:.........:.........:.........:.........:.........72000 .........:.........:.........:.........:.........:.........:.........:.........:.........:.........73000 .........:.........:.........:.........:.........:.........:.........:.........:.........:.........74000 .........:.........:.........:.........:.........:.........:.........:.........:.........:.........75000 .........:.........:.........:.........:.........:.........:.........:.........:.........:.........76000 .........:.........:.........:.........:.........:.........:.........:.........:.........:.........77000 .........:.........:.........:.........:.........:.........:.........:.........:.........:.........78000 .........:.........:.........:.........:.........:.........:.........:.........:.........:.........79000 .........:.........:.........:.........:.........:.........:.........:.........:.........:.........80000 .........:.........:.........:.........:.........:.........:.........:.........:.........:.........81000 .........:.........:.........:.........:.........:.........:.........:.........:.........:.........82000 .........:.........:.........:.........:.........:.........:.........:.........:.........:.........83000 .........:.........:.........:.........:.........:.........:.........:.........:.........:.........84000 .........:.........:.........:.........:.........:.........:.........:.........:.........:.........85000 .........:.........:.........:.........:.........:.........:.........:...WARNING: Found the following zero-mass residues in protein entry sp|O60613|SEP15_HUMAN : U MVAMAAGPSGCLVPAFGLRLLLATVLQAVSAFGAEFSSEACRELGFSSNLLCSSCDLLGQFNLLQLDPDCRGCCQEEAQFETKKLYAGAILEVCGUKLGRFPQVQAFVRSDKPKLFRGLQIKYVRGSDPVLKLLDDNGNIAEELSILKWNTDSVEEFLSEKLERI ......:.........:.........86000 .........:.........:.........:.........:.........:.........:.........:.........:.........:.........87000 .......WARNING: Found the following zero-mass residues in protein entry sp|P07203|GPX1_HUMAN : U MCAARLAAAAAAAQSVYAFSARPLAGGEPVSLGSLRGKVLLIENVASLUGTTVRDYTQMNELQRRLGPRGLVVLGFPCNQFGHQENAKNEEILNSLKYVRPGGGFEPNFMLFEKCEVNGAGAHPLFAFLREALPAPSDDATALMTDPKLITWSPVCRNDVAWNFEKFLVGPDGVPLRRYSRRFQTIDIEPDIEALLSQGPSCA ..:.........:.........:.........:.........:.........:.........:.........:.........:.........88000 .........:.........:.........:.........WARNING: Found the following zero-mass residues in protein entry sp|P22352|GPX3_HUMAN : U MARLLQASCLLSLLLAGFVSQSRGQEKSKMDCHGGISGTIYEYGALTIDGEEYIPFKQYAGKYVLFVNVASYUGLTGQYIELNALQEELAPFGLVILGFPCNQFGKQEPGENSEILPTLKYVRPGGGFVPNFQLFEKGDVNGEKEQKFYTFLKNSCPPTSELLGTSDRLFWEPMKVHDIRWNFEKFLVGPDGIPIMRWHHRTTVSNVKMDILSYMRRQAALGVKRK :.........:.........:.........:.........:.........:.........89000 ........WARNING: Found the following zero-mass residues in protein entry sp|P36969|GPX4_HUMAN : U MSLGRLCRLLKPALLCGALAAPGLAGTMCASRDDWRCARSMHEFSAKDIDGHMVNLDKYRGFVCIVTNVASQUGKTEVNYTQLVDLHARYAECGLRILAFPCNQFGKQEPGSNEEIKEFAAGYNVKFDMFSKICVNGDDAHPLWKWMKIQPKGKGILGNAIKWNFTKFLIDKNGCVVKRYGPMEEPLVIEKDLPHYF .:.........:.........:.........:.........:.........:.........:.........:.........:......WARNING: Found the following zero-mass residues in protein entry sp|P55073|IOD3_HUMAN : U MPRQATSRLVVGEGEGSQGASGPAATMLRSLLLHSLRLCAQTASCLVLFPRFLGTAFMLWLLDFLCIRKHFLGRRRRGQPEPEVELNSEGEEVPPDDPPICVSDDNRLCTLASLKAVWHGQKLDFFKQAHEGGPAPNSEVVLPDGFQSQHILDYAQGNRPLVLNFGSCTUPPFMARMSAFQRLVTKYQRDVDFLIIYIEEAHPSDGWVTTDSPYIIPQHRSLEDRVSAARVLQQGAPGCALVLDTMANSSSSAYGAYFERLYVIQSGTIMYQGGRGPDGYQVSELRTWLERYDEQLHGARPRRV ...90000 .........:.........:.........:........WARNING: Found the following zero-mass residues in protein entry sp|P62341|SELT_HUMAN : U MRLLLLLLVAASAMVRSEASANLGGVPSKRLKMQYATGPLLKFQICVSUGYRRVFEEYMRVISQRYPDIRIEGENYLPQPIYRHIASFLSVFKLVLIGLIIVGKDPFAFFGMQAPSIWQWGQENKVYACMMVFFLSNMIENQCMSTGAFEITLNDVPVWSKLESGHLPSMQQLVQILDNEMKLNVHMDSIPHHRS .:.........:.........:.........:.........:.........:.........91000 .........:.........:.........:.........:.........:.........:.........:.........:.........:.........92000 .........:.........:.......WARNING: Found the following zero-mass residues in protein entry sp|Q16881|TRXR1_HUMAN : U MGCAEGKAVAAAAPTELQTKGKNGDGRRRSAKDHHPGKTLPENPAGFTSTATADSRALLQAYIDGHSVVIFSRSTCTRCTEVKKLFKSLCVPYFVLELDQTEDGRALEGTLSELAAETDLPVVFVKQRKIGGHGPTLKAYQEGRLQKLLKMNGPEDLPKSYDYDLIIIGGGSGGLAAAKEAAQYGKKVMVLDFVTPTPLGTRWGLGGTCVNVGCIPKKLMHQAALLGQALQDSRNYGWKVEETVKHDWDRMIEAVQNHIGSLNWGYRVALREKKVVYENAYGQFIGPHRIKATNNKGKEKIYSAERFLIATGERPRYLGIPGDKEYCISSDDLFSLPYCPGKTLVVGASYVALECAGFLAGIGLDVTVMVRSILLRGFDQDMANKIGEHMEEHGIKFIRQFVPIKVEQIEAGTPGRLRVVAQSTNSEEIIEGEYNTVMLAIGRDACTRKIGLETVGVKINEKTGKIPVTDEEQTNVPYIYAIGDILEDKVELTPVAIQAGRLLAQRLYAGSTVKCDYENVPTTVFTPLEYGACGLSEEKAVEKFGEENIEVYHSYFWPLEWTIPSRDNNKCYAKIICNTKDNERVVGFHVLGPNAGEVTQGFAAALKCGLTKKQLDSTIGIHPVCAEVFTTLSVTKRSGASILQAGCUG ..:.........:.........:.........:.........:.........:.........:.........93000 .........:.........:.........:.........:.........:.........:.........:.........:.........:.........94000 .........:.........:.........:.........:.........:.........:.........:.........:.........:.........95000 .........:.........:.........:..WARNING: Found the following zero-mass residues in protein entry sp|Q86VQ6|TRXR3_HUMAN : U MERSPPQSPGPGKAGDAPNRRSGHVRGARVLSPPGRRARLSSPGPSRSSEAREELRRHLVGLIERSRVVIFSKSYCPHSTRVKELFSSLGVECNVLELDQVDDGARVQEVLSEITNQKTVPNIFVNKVHVGGCDQTFQAYQSGLLQKLLQEDLAYDYDLIIIGGGSGGLSCAKEAAILGKKVMVLDFVVPSPQGTSWGLGGTCVNVGCIPKKLMHQAALLGQALCDSRKFGWEYNQQVRHNWETMTKAIQNHISSLNWGYRLSLREKAVAYVNSYGEFVEHHKIKATNKKGQETYYTAAQFVIATGERPRYLGIQGDKEYCITSDDLFSLPYCPGKTLVVGASYVALECAGFLAGFGLDVTVMVRSILLRGFDQEMAEKVGSYMEQHGVKFLRKFIPVMVQQLEKGSPGKLKVLAKSTEGTETIEGVYNTVLLAIGRDSCTRKIGLEKIGVKINEKSGKIPVNDVEQTNVPYVYAVGDILEDKPELTPVAIQSGKLLAQRLFGASLEKCDYINVPTTVFTPLEYGCCGLSEEKAIEVYKKENLEIYHTLFWPLEWTVAGRENNTCYAKIICNKFDHDRVIGFHILGPNAGEVTQGFAAAMKCGLTKQLLDDTIGIHPTCGEVFTTLEITKSSGLDITQKGCUG .......:.........:.........:.........:.........:.........:.....WARNING: Found the following zero-mass residues in protein entry sp|Q8IZQ5|SELH_HUMAN : U MAPRGRKRKAEAAVVAVAEKREKLANGGEGMEEATVVIEHCTSURVYGRNAAALSQALRLEAPELPVKVNPTKPRRGSFEVTLLRPDGSSAELWTGIKKGPPRKLKFPEPQEVVEELKKYLS ....96000 .........:.........:.........:.........:.........:.........:.........:.........:.........:.........97000 .........:.........:.........:.........:.........:.........:.........:.........:.WARNING: Found the following zero-mass residues in protein entry sp|Q8WWX9|SELM_HUMAN : U MSLLLPPLALLLLLAALVAPATAATAYRPDWNRLSGLTRARVETCGGUQLNRLKEVKAFVTQDIPFYHNLVMKHLPGADPELVLLGRRYEELERIPLSEMTREEINALVQELGFYRKAAPDAQVPPEYVWAPAKPPEETSDHADL ........:.........98000 .........:.........:.........:.........:.........:.........:.........:.........:.........:.........99000 .........:.........:.........:.........:.........:.........:.........:..WARNING: Found the following zero-mass residues in protein entry sp|Q9BQE4|SELS_HUMAN : U MERQEESLSARPALETEGLRFLHTTVGSLLATYGWYIVFSCILLYVVFQKLSARLRALRQRQLDRAAAAVEPDVVVKRQEALAAARLKMQEELNAQVEKHKEKLKQLEEEKRRQKIEMWDSMQEGKSYKGNAKKPQEEDSPGPSTSSVLKRKSDRKPLRGGGYNPLSGEGGGACSWRPGRRGPSSGGUG .......:.........:.........100000 ..WARNING: Found the following zero-mass residues in protein entry sp|Q9BVL4|SELO_HUMAN : U MAVYRAALGASLAAARLLPLGRCSPSPAPRSTLSGAAMEPAPRWLAGLRFDNRALRALPVEAPPPGPEGAPSAPRPVPGACFTRVQPTPLRQPRLVALSEPALALLGLGAPPAREAEAEAALFFSGNALLPGAEPAAHCYCGHQFGQFAGQLGDGAAMYLGEVCTATGERWELQLKGAGPTPFSRQADGRKVLRSSIREFLCSEAMFHLGVPTTRAGACVTSESTVVRDVFYDGNPKYEQCTVVLRVASTFIRFGSFEIFKSADEHTGRAGPSVGRNDIRVQLLDYVISSFYPEIQAAHASDSVQRNAAFFREVTRRTARMVAEWQCVGFCHGVLNTDNMSILGLTIDYGPFGFLDRYDPDHVCNASDNTGRYAYSKQPEVCRWNLRKLAEALQPELPLELGEAILAEEFDAEFQRHYLQKMRRKLGLVQVELEEDGALVSKLLETMHLTGADFTNTFYLLSSFPVELESPGLAEFLARLMEQCASLEELRLAFRPQMDPRQLSMMLMLAQSNPQLFALMGTRAGIARELERVEQQSRLEQLSAAELQSRNQGHWADWLQAYRARLDKDLEGAGDAAAWQAEHVRVMHANNPKYVLRNYIAQNAIEAAERGDFSEVRRVLKLLETPYHCEAGAATDAEATEADGADGRQRSYSSKPPLWAAELCVTUSS .......:.........:.........:.........:...WARNING: Found the following zero-mass residues in protein entry sp|Q9C0D9|EPT1_HUMAN : U MAGYEYVSPEQLAGFDKYKYSAVDTNPLSLYVMHPFWNTIVKVFPTWLAPNLITFSGFLLVVFNFLLMAYFDPDFYASAPGHKHVPDWVWIVVGILNFVAYTLDGVDGKQARRTNSSTPLGELFDHGLDSWSCVYFVVTVYSIFGRGSTGVSVFVLYLLLWVVLFSFILSHWEKYNTGILFLPWGYDISQVTISFVYIVTAVVGVEAWYEPFLFNFLYRDLFTAMIIGCALCVTLPMSLLNFFRSYKNNTLKLNSVYEAMVPLFSPCLLFILSTAWILWSPSDILELHPRVFYFMVGTAFANSTCQLIVCQMSSTRCPTLNWLLVPLFLVVLVVNLGVASYVESILLYTLTTAFTLAHIHYGVRVVKQLSSHFQIYPFSLRKPNSDULGMEEKNIGL ......:.........:.........:.........:.........:.........101000 .........:.........:.........:.........WARNING: Found the following zero-mass residues in protein entry sp|Q9NNW7|TRXR2_HUMAN : U MAAMAVALRGLGGRFRWRTQAVAGGVRGAARGAAAGQRDYDLLVVGGGSGGLACAKEAAQLGRKVAVVDYVEPSPQGTRWGLGGTCVNVGCIPKKLMHQAALLGGLIQDAPNYGWEVAQPVPHDWRKMAEAVQNHVKSLNWGHRVQLQDRKVKYFNIKASFVDEHTVCGVAKGGKEILLSADHIIIATGGRPRYPTHIEGALEYGITSDDIFWLKESPGKTLVVGASYVALECAGFLTGIGLDTTIMMRSIPLRGFDQQMSSMVIEHMASHGTRFLRGCAPSRVRRLPDGQLQVTWEDSTTGKEDTGTFDTVLWAIGRVPDTRSLNLEKAGVDTSPDTQKILVDSREATSVPHIYAIGDVVEGRPELTPIAIMAGRLLVQRLFGGSSDLMDYDNVPTTVFTPLEYGCVGLSEEEAVARHGQEHVEVYHAHYKPLEFTVAGRDASQCYVKMVCLREPPQLVLGLHFLGPNAGEVTQGFALGIKCGASYAQVMRTVGIHPTCSEEVVKLRISKRSGLDPTVTGCUG :.........:.........:.........:.........:.........:.........102000 .........:.........:..WARNING: Found the following zero-mass residues in protein entry sp|Q9NZV5|SELN_HUMAN : UU MGRARPGQRGPPSPGPAAQPPAPPRRRARSLALLGALLAAAAAAAVRVCARHAEAQAAARQELALKTLGTDGLFLFSSLDTDGDMYISPEEFKPIAEKLTGSCSVTQTGVQWCSHSSLQPQLPWLNUSSCLSLLRSTPAASCEEEELPPDPSEETLTIEARFQPLLPETMTKSKDGFLGVSRLALSGLRNWTAAASPSAVFATRHFQPFLPPPGQELGEPWWIIPSELSMFTGYLSNNRFYPPPPKGKEVIIHRLLSMFHPRPFVKTRFAPQGAVACLTAISDFYYTVMFRIHAEFQLSEPPDFPFWFSPAQFTGHIILSKDATHVRDFRLFVPNHRSLNVDMEWLYGASESSNMEVDIGYIPQMELEATGPSVPSVILDEDGSMIDSHLPSGEPLQFVFEEIKWQQELSWEEAARRLEVAMYPFKKVSYLPFTEAFDRAKAENKLVHSILLWGALDDQSCUGSGRTLRETVLESSPILTLLNESFISTWSLVKELEELQNNQENSSHQKLAGLHLEKYSFPVEMMICLPNGTVVHHINANYFLDITSVKPEEIESNLFSFSSTFEDPSTATYMQFLKEGLRRGLPLLQP .......:.........:.........:.........:.........:.........:.........:.........103000 .........:.........:.........:.........:.........:.........:.........:.........:..WARNING: Found the following zero-mass residues in protein entry sp|Q9Y6D0|SELK_HUMAN : U MVYISNGQVLDSRSQSPWRLSLITDFFWGIAEFVVLFFKTLLQQDVKKRRSYGNSSDSRYDDGRGPPGNPPRRMGRINHLRGPSPPPMAGGUGR .......:.........104000 .........:.........:.........:.........:.........:.........:.........:.........:.........:.........105000 .........:.........:.........:.........:.........:.........:.........:.........:.........:.........106000 .........:.........:.........:.........:.........:.........:.........:.........:.........:.........107000 .........:.........:.........:.........:.........:.........:.........:.........:.........:.........108000 .........:.........:.........:.........:.........:.........:.........:.........:.........:.........109000 .........:.........:.........:.........:.........:.........:.........:.........:.........:.........110000 .........:.........:.........:.........:.........:.........:.........:.........:.........:.........111000 .........:.........:.........:.........:.........:.........:.........:.........:.........:.........112000 .........:.........:.........:.........:.........:.........:.........:.........:.........:.........113000 .........:.........:.........:.........:.........:.........:.........:.........:.........:.........114000 .........:.........:.........:.........:.........:.........:.........:.........:.........:.........115000 .........:.........:.........:.........:.........:.........:.........:.........:.........:.........116000 .........:.........:.........:.........:.........:.........:.........:.........:.........:.........117000 .........:.........:.........:.........:.........:.........:.........:.........:.........:.........118000 .........:.........:.........:.........:.........:.........:.........:.........:.........:.........119000 .........:.........:.........:.........:.........:.........:.........:.........:.........:.........120000 .........:.........:.........:.........:.........:.........:.........:.........:.........:.........121000 .........:.........:.........:.........:.........:.........:.........:.........:.........:.........122000 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.........:.........:.........:.........:.........:.........:.........:.........:.........:.........159000 .........:.........:.........:.........:.........:.........:.........:.........:.........:.........160000 .........:.........:.........:.........:.........:.........:.........:.........:.........:.........161000 .........:.........:.........:.........:.........:.........:.........:.........:.........:.........162000 .........:.........:.........:.........:.........:.........:.........:.........:.........:.........163000 .........:.........:.........:.........:.........:.........:.........:.........:.........:.........164000 .........:.........:.........:.........:.........:.........:.........:.........:.........:.........165000 .........:.........:.........:.........:.........:.........:.........:.........:.........:.........166000 .........:.........:.........:.........:.........:.........:.........:.........:.........:.. Total: 166922 Computing degenerate peptides for 95673 proteins: 0%...10%...20%...30%...40%...50%...60%...70%...80%...90%...100% Computing probabilities for 111584 proteins. Loop 1: 0%...20%...40%...60%...80%...100% Loop 2: 0%...20%...40%...60%...80%...100% Computing probabilities for 111584 proteins. Loop 1: 0%...20%...40%...60%...80%...100% Loop 2: 0%...20%...40%...60%...80%...100% Computing probabilities for 111584 proteins. Loop 1: 0%...20%...40%...60%...80%...100% Loop 2: 0%...20%...40%...60%...80%...100% Computing probabilities for 111584 proteins. Loop 1: 0%...20%...40%...60%...80%...100% Loop 2: 0%...20%...40%...60%...80%...100% Computing probabilities for 111584 proteins. Loop 1: 0%...20%...40%...60%...80%...100% Loop 2: 0%...20%...40%...60%...80%...100% Computing probabilities for 111584 proteins. Loop 1: 0%...20%...40%...60%...80%...100% Loop 2: 0%...20%...40%...60%...80%...100% Computing probabilities for 111584 proteins. Loop 1: 0%...20%...40%...60%...80%...100% Loop 2: 0%...20%...40%...60%...80%...100% Computing probabilities for 111584 proteins. Loop 1: 0%...20%...40%...60%...80%...100% Loop 2: 0%...20%...40%...60%...80%...100% Computing probabilities for 111584 proteins. Loop 1: 0%...20%...40%...60%...80%...100% Loop 2: 0%...20%...40%...60%...80%...100% Computing probabilities for 111584 proteins. Loop 1: 0%...20%...40%...60%...80%...100% Loop 2: 0%...20%...40%...60%...80%...100% Computing probabilities for 111584 proteins. Loop 1: 0%...20%...40%...60%...80%...100% Loop 2: 0%...20%...40%...60%...80%...100% Computing probabilities for 111584 proteins. Loop 1: 0%...20%...40%...60%...80%...100% Loop 2: 0%...20%...40%...60%...80%...100% Computing probabilities for 111584 proteins. Loop 1: 0%...20%...40%...60%...80%...100% Loop 2: 0%...20%...40%...60%...80%...100% Calculating sensitivity...and error tables... Computing MU for 111584 proteins: 0%...10%...20%...30%...40%...50%...60%...70%INFO: mu=0.000221525, db_size=124499729 ...80%...90%...100% time="06:05:27" level=info msg=Done Process 'ProteinProphet' finished, exit code: 0 PhilosopherDbAnnotate [Work dir: D:\20240927_SW-KF\PLD_method\output] C:\Users\dubia\OneDrive\Desktop\FragPipe-jre-22.0\fragpipe\tools\Philosopher\philosopher-v5.1.1.exe database --annotate D:\20240927_SW-KF\sequence\2024-10-03-decoys-contam-UP000005640.fas --prefix rev_ time="06:05:27" level=info msg="Executing Database v5.1.1" time="06:05:27" level=info msg="Annotating the database" time="06:05:27" level=info msg=Done Process 'PhilosopherDbAnnotate' finished, exit code: 0 PhilosopherFilter [Work dir: D:\20240927_SW-KF\PLD_method\output] C:\Users\dubia\OneDrive\Desktop\FragPipe-jre-22.0\fragpipe\tools\Philosopher\philosopher-v5.1.1.exe filter --picked --prot 0.01 --tag rev_ --pepxml D:\20240927_SW-KF\PLD_method\output --protxml D:\20240927_SW-KF\PLD_method\output\combined.prot.xml --razor time="06:05:27" level=info msg="Executing Filter v5.1.1" time="06:05:27" level=info msg="Processing peptide identification files" time="06:05:27" level=info msg="Parsing D:\\20240927_SW-KF\\PLD_method\\output\\interact-20240927_SW-KF_S2_total_Slot2-39_1_8060_diatracer.mod.pep.xml" time="06:05:27" level=info msg="Parsing D:\\20240927_SW-KF\\PLD_method\\output\\interact-20240927_SW-KF_S1_PLD_Slot2-38_1_8058_diatracer.mod.pep.xml" time="06:05:27" level=info msg="Parsing D:\\20240927_SW-KF\\PLD_method\\output\\interact-20240927_SW-KF_S1_total_Slot2-36_1_8055_diatracer.mod.pep.xml" time="06:05:27" level=info msg="Parsing D:\\20240927_SW-KF\\PLD_method\\output\\interact-20240927_SW-KF_S1_sup_Slot2-37_1_8056_diatracer.mod.pep.xml" time="06:05:27" level=info msg="Parsing D:\\20240927_SW-KF\\PLD_method\\output\\interact-20240927_SW-KF_S2_PLD_Slot2-41_1_8063_diatracer.mod.pep.xml" time="06:05:27" level=info msg="Parsing D:\\20240927_SW-KF\\PLD_method\\output\\interact-20240927_SW-KF_S2_sup_Slot2-40_1_8061_diatracer.mod.pep.xml" time="06:05:41" level=info msg="1+ Charge profile" decoy=61 target=212 time="06:05:41" level=info msg="2+ Charge profile" decoy=27134 target=491247 time="06:05:41" level=info msg="3+ Charge profile" decoy=15219 target=308381 time="06:05:41" level=info msg="4+ Charge profile" decoy=2524 target=53215 time="06:05:41" level=info msg="5+ Charge profile" decoy=0 target=0 time="06:05:41" level=info msg="6+ Charge profile" decoy=0 target=0 time="06:05:44" level=info msg="Database search results" ions=164381 peptides=141998 psms=897993 time="06:05:45" level=info msg="Converged to 1.00 % FDR with 726840 PSMs" decoy=7268 threshold=0.871284 total=734108 time="06:05:45" level=info msg="Converged to 1.00 % FDR with 57569 Peptides" decoy=575 threshold=0.983051 total=58144 time="06:05:45" level=info msg="Converged to 1.00 % FDR with 72675 Ions" decoy=727 threshold=0.979021 total=73402 time="06:05:45" level=info msg="Protein inference results" decoy=24624 target=38756 time="06:05:46" level=info msg="Converged to 0.93 % FDR with 6875 Proteins" decoy=64 threshold=0.9951 total=6939 time="06:05:46" level=info msg="2D FDR estimation: Protein mirror image" decoy=6875 target=6875 time="06:05:49" level=info msg="Second filtering results" ions=114979 peptides=93804 psms=836138 time="06:05:50" level=info msg="Converged to 1.00 % FDR with 781789 PSMs" decoy=7817 threshold=0.680577 total=789606 time="06:05:50" level=info msg="Converged to 1.00 % FDR with 61286 Peptides" decoy=612 threshold=0.95262 total=61898 time="06:05:50" level=info msg="Converged to 1.00 % FDR with 78008 Ions" decoy=780 threshold=0.939919 total=78788 time="06:05:50" level=info msg="Post processing identifications" time="06:05:58" level=info msg="Assigning protein identifications to layers" time="06:08:02" level=info msg="Processing protein inference" time="06:08:03" level=info msg="Synchronizing PSMs and proteins" time="06:08:07" level=info msg="Final report numbers after FDR filtering, and post-processing" ions=77999 peptides=61278 proteins=6875 psms=781753 time="06:08:07" level=info msg=Saving time="06:08:10" level=info msg=Done Process 'PhilosopherFilter' finished, exit code: 0 PhilosopherReport [Work dir: D:\20240927_SW-KF\PLD_method\output] C:\Users\dubia\OneDrive\Desktop\FragPipe-jre-22.0\fragpipe\tools\Philosopher\philosopher-v5.1.1.exe report --removecontam time="06:08:10" level=info msg="Executing Report v5.1.1" time="06:08:10" level=info msg="Creating reports" time="06:08:28" level=info msg=Done Process 'PhilosopherReport' finished, exit code: 0 WorkspaceClean [Work dir: D:\20240927_SW-KF\PLD_method\output] C:\Users\dubia\OneDrive\Desktop\FragPipe-jre-22.0\fragpipe\tools\Philosopher\philosopher-v5.1.1.exe workspace --clean --nocheck time="06:08:28" level=info msg="Executing Workspace v5.1.1" time="06:08:28" level=info msg="Removing workspace" time="06:08:28" level=info msg=Done Process 'WorkspaceClean' finished, exit code: 0 SpecLibGen [Work dir: D:\20240927_SW-KF\PLD_method\output] C:\Users\dubia\anaconda3\python -u C:\Users\dubia\OneDrive\Desktop\FragPipe-jre-22.0\fragpipe\tools\speclib\gen_con_spec_lib.py D:\20240927_SW-KF\sequence\2024-10-03-decoys-contam-UP000005640.fas D:\20240927_SW-KF\PLD_method\output unused D:\20240927_SW-KF\PLD_method\output True unused use_easypqp noiRT;noIM 23 "--unimod C:/Users/dubia/OneDrive/Desktop/FragPipe-jre-22.0/fragpipe/tools/unimod_old.xml --max_delta_unimod 0.02 --max_delta_ppm 15.0 --fragment_types [\'b\',\'y\',]" "--rt_lowess_fraction 0.0" delete_intermediate_files D:\20240927_SW-KF\PLD_method\output\filelist_speclibgen.txt File list provided Spectral library building Commands to execute: 'C:\Users\dubia\anaconda3\Scripts\easypqp.exe' convert --unimod C:/Users/dubia/OneDrive/Desktop/FragPipe-jre-22.0/fragpipe/tools/unimod_old.xml --max_delta_unimod 0.02 --max_delta_ppm 15.0 --fragment_types '['"'"'b'"'"','"'"'y'"'"',]' --enable_unannotated --pepxml '['"'"'D:\\20240927_SW-KF\\PLD_method\\output\\interact-20240927_SW-KF_S1_PLD_Slot2-38_1_8058_diatracer.mod.pep.xml'"'"']' --spectra 'D:\20240927_SW-KF\PLD_method\raw\20240927_SW-KF_S1_PLD_Slot2-38_1_8058_diatracer.mzML' --exclude-range -1.5,3.5 --psms 20240927_SW-KF_S1_PLD_Slot2-38_1_8058_diatracer.psmpkl --peaks 20240927_SW-KF_S1_PLD_Slot2-38_1_8058_diatracer.peakpkl 'C:\Users\dubia\anaconda3\Scripts\easypqp.exe' convert --unimod C:/Users/dubia/OneDrive/Desktop/FragPipe-jre-22.0/fragpipe/tools/unimod_old.xml --max_delta_unimod 0.02 --max_delta_ppm 15.0 --fragment_types '['"'"'b'"'"','"'"'y'"'"',]' --enable_unannotated --pepxml '['"'"'D:\\20240927_SW-KF\\PLD_method\\output\\interact-20240927_SW-KF_S1_sup_Slot2-37_1_8056_diatracer.mod.pep.xml'"'"']' --spectra 'D:\20240927_SW-KF\PLD_method\raw\20240927_SW-KF_S1_sup_Slot2-37_1_8056_diatracer.mzML' --exclude-range -1.5,3.5 --psms 20240927_SW-KF_S1_sup_Slot2-37_1_8056_diatracer.psmpkl --peaks 20240927_SW-KF_S1_sup_Slot2-37_1_8056_diatracer.peakpkl 'C:\Users\dubia\anaconda3\Scripts\easypqp.exe' convert --unimod C:/Users/dubia/OneDrive/Desktop/FragPipe-jre-22.0/fragpipe/tools/unimod_old.xml --max_delta_unimod 0.02 --max_delta_ppm 15.0 --fragment_types '['"'"'b'"'"','"'"'y'"'"',]' --enable_unannotated --pepxml '['"'"'D:\\20240927_SW-KF\\PLD_method\\output\\interact-20240927_SW-KF_S1_total_Slot2-36_1_8055_diatracer.mod.pep.xml'"'"']' --spectra 'D:\20240927_SW-KF\PLD_method\raw\20240927_SW-KF_S1_total_Slot2-36_1_8055_diatracer.mzML' --exclude-range -1.5,3.5 --psms 20240927_SW-KF_S1_total_Slot2-36_1_8055_diatracer.psmpkl --peaks 20240927_SW-KF_S1_total_Slot2-36_1_8055_diatracer.peakpkl 'C:\Users\dubia\anaconda3\Scripts\easypqp.exe' convert --unimod C:/Users/dubia/OneDrive/Desktop/FragPipe-jre-22.0/fragpipe/tools/unimod_old.xml --max_delta_unimod 0.02 --max_delta_ppm 15.0 --fragment_types '['"'"'b'"'"','"'"'y'"'"',]' --enable_unannotated --pepxml '['"'"'D:\\20240927_SW-KF\\PLD_method\\output\\interact-20240927_SW-KF_S2_PLD_Slot2-41_1_8063_diatracer.mod.pep.xml'"'"']' --spectra 'D:\20240927_SW-KF\PLD_method\raw\20240927_SW-KF_S2_PLD_Slot2-41_1_8063_diatracer.mzML' --exclude-range -1.5,3.5 --psms 20240927_SW-KF_S2_PLD_Slot2-41_1_8063_diatracer.psmpkl --peaks 20240927_SW-KF_S2_PLD_Slot2-41_1_8063_diatracer.peakpkl 'C:\Users\dubia\anaconda3\Scripts\easypqp.exe' convert --unimod C:/Users/dubia/OneDrive/Desktop/FragPipe-jre-22.0/fragpipe/tools/unimod_old.xml --max_delta_unimod 0.02 --max_delta_ppm 15.0 --fragment_types '['"'"'b'"'"','"'"'y'"'"',]' --enable_unannotated --pepxml '['"'"'D:\\20240927_SW-KF\\PLD_method\\output\\interact-20240927_SW-KF_S2_sup_Slot2-40_1_8061_diatracer.mod.pep.xml'"'"']' --spectra 'D:\20240927_SW-KF\PLD_method\raw\20240927_SW-KF_S2_sup_Slot2-40_1_8061_diatracer.mzML' --exclude-range -1.5,3.5 --psms 20240927_SW-KF_S2_sup_Slot2-40_1_8061_diatracer.psmpkl --peaks 20240927_SW-KF_S2_sup_Slot2-40_1_8061_diatracer.peakpkl 'C:\Users\dubia\anaconda3\Scripts\easypqp.exe' convert --unimod C:/Users/dubia/OneDrive/Desktop/FragPipe-jre-22.0/fragpipe/tools/unimod_old.xml --max_delta_unimod 0.02 --max_delta_ppm 15.0 --fragment_types '['"'"'b'"'"','"'"'y'"'"',]' --enable_unannotated --pepxml '['"'"'D:\\20240927_SW-KF\\PLD_method\\output\\interact-20240927_SW-KF_S2_total_Slot2-39_1_8060_diatracer.mod.pep.xml'"'"']' --spectra 'D:\20240927_SW-KF\PLD_method\raw\20240927_SW-KF_S2_total_Slot2-39_1_8060_diatracer.mzML' --exclude-range -1.5,3.5 --psms 20240927_SW-KF_S2_total_Slot2-39_1_8060_diatracer.psmpkl --peaks 20240927_SW-KF_S2_total_Slot2-39_1_8060_diatracer.peakpkl 'C:\Users\dubia\anaconda3\Scripts\easypqp.exe' library --psmtsv 'D:\20240927_SW-KF\PLD_method\output\psm.tsv' --peptidetsv 'D:\20240927_SW-KF\PLD_method\output\peptide.tsv' --out easypqp_lib_openswath.tsv --rt_lowess_fraction 0.0 'D:\20240927_SW-KF\PLD_method\output\filelist_easypqp_library.txt' ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ easypqp, version 0.1.49 Executing ['C:\\Users\\dubia\\anaconda3\\Scripts\\easypqp.exe', 'convert', '--unimod', 'C:/Users/dubia/OneDrive/Desktop/FragPipe-jre-22.0/fragpipe/tools/unimod_old.xml', '--max_delta_unimod', '0.02', '--max_delta_ppm', '15.0', '--fragment_types', "['b','y',]", '--enable_unannotated', '--pepxml', "['D:\\\\20240927_SW-KF\\\\PLD_method\\\\output\\\\interact-20240927_SW-KF_S1_PLD_Slot2-38_1_8058_diatracer.mod.pep.xml']", '--spectra', 'D:\\20240927_SW-KF\\PLD_method\\raw\\20240927_SW-KF_S1_PLD_Slot2-38_1_8058_diatracer.mzML', '--exclude-range', '-1.5,3.5', '--psms', '20240927_SW-KF_S1_PLD_Slot2-38_1_8058_diatracer.psmpkl', '--peaks', '20240927_SW-KF_S1_PLD_Slot2-38_1_8058_diatracer.peakpkl'] 2024-10-04 06:08:47 - Info: Converting ['D:\\20240927_SW-KF\\PLD_method\\output\\interact-20240927_SW-KF_S1_PLD_Slot2-38_1_8058_diatracer.mod.pep.xml']. 2024-10-04 06:08:47 - Info: Parsing run 20240927_SW-KF_S1_PLD_Slot2-38_1_8058_diatracer. 2024-10-04 06:08:47 - Info: Parsing pepXML: D:\20240927_SW-KF\PLD_method\output\interact-20240927_SW-KF_S1_PLD_Slot2-38_1_8058_diatracer.mod.pep.xml 2024-10-04 06:08:57 - Info: 82198 PSMs parsed. 2024-10-04 06:08:57 - Info: Generate theoretical spectra. Warning: unknown C-terminal modification '87.026746' - adding it to the database Warning: unknown modification '216.074623' of residue 'E' - adding it to the database Warning: unknown modification '245.101173' of residue 'D' - adding it to the database occurred 4 times Warning: unknown modification '202.058973' of residue 'D' - adding it to the database Warning: unknown C-terminal modification '87.026746' - adding it to the database Warning: unknown modification '259.116823' of residue 'E' - adding it to the database 2024-10-04 06:09:03 - Info: Processing spectra from file D:\20240927_SW-KF\PLD_method\raw\20240927_SW-KF_S1_PLD_Slot2-38_1_8058_diatracer.mzML. 2024-10-04 06:12:46 - Info: Loaded 1130205 spectra 2024-10-04 06:12:46 - Info: Collecting PSMs... C:\Users\dubia\anaconda3\Lib\site-packages\numpy\core\fromnumeric.py:59: FutureWarning: 'DataFrame.swapaxes' is deprecated and will be removed in a future version. Please use 'DataFrame.transpose' instead. return bound(*args, **kwds) 2024-10-04 06:12:56 - Info: Got 82198 PSMs 2024-10-04 06:12:56 - Info: Generating Transitions... 2024-10-04 06:12:58 - Info: Generated 1145047 transitions 2024-10-04 06:13:00 - Info: PSMs successfully converted and stored in 20240927_SW-KF_S1_PLD_Slot2-38_1_8058_diatracer.psmpkl. 2024-10-04 06:13:01 - Info: Peaks successfully converted and stored in 20240927_SW-KF_S1_PLD_Slot2-38_1_8058_diatracer.peakpkl. 2024-10-04 06:13:01 - Info: Total elapsed time 4.22 minutes. occurred 529 times Executing ['C:\\Users\\dubia\\anaconda3\\Scripts\\easypqp.exe', 'convert', '--unimod', 'C:/Users/dubia/OneDrive/Desktop/FragPipe-jre-22.0/fragpipe/tools/unimod_old.xml', '--max_delta_unimod', '0.02', '--max_delta_ppm', '15.0', '--fragment_types', "['b','y',]", '--enable_unannotated', '--pepxml', "['D:\\\\20240927_SW-KF\\\\PLD_method\\\\output\\\\interact-20240927_SW-KF_S1_sup_Slot2-37_1_8056_diatracer.mod.pep.xml']", '--spectra', 'D:\\20240927_SW-KF\\PLD_method\\raw\\20240927_SW-KF_S1_sup_Slot2-37_1_8056_diatracer.mzML', '--exclude-range', '-1.5,3.5', '--psms', '20240927_SW-KF_S1_sup_Slot2-37_1_8056_diatracer.psmpkl', '--peaks', '20240927_SW-KF_S1_sup_Slot2-37_1_8056_diatracer.peakpkl'] 2024-10-04 06:13:04 - Info: Converting ['D:\\20240927_SW-KF\\PLD_method\\output\\interact-20240927_SW-KF_S1_sup_Slot2-37_1_8056_diatracer.mod.pep.xml']. 2024-10-04 06:13:04 - Info: Parsing run 20240927_SW-KF_S1_sup_Slot2-37_1_8056_diatracer. 2024-10-04 06:13:05 - Info: Parsing pepXML: D:\20240927_SW-KF\PLD_method\output\interact-20240927_SW-KF_S1_sup_Slot2-37_1_8056_diatracer.mod.pep.xml 2024-10-04 06:13:27 - Info: 186751 PSMs parsed. 2024-10-04 06:13:27 - Info: Generate theoretical spectra. Warning: unknown modification '216.074623' of residue 'E' - adding it to the database Warning: unknown modification '259.116823' of residue 'E' - adding it to the database Warning: unknown C-terminal modification '87.026746' - adding it to the database Warning: unknown modification '202.058973' of residue 'D' - adding it to the database Warning: unknown modification '245.101173' of residue 'D' - adding it to the database 2024-10-04 06:13:42 - Info: Processing spectra from file D:\20240927_SW-KF\PLD_method\raw\20240927_SW-KF_S1_sup_Slot2-37_1_8056_diatracer.mzML. 2024-10-04 06:17:07 - Info: Loaded 1054573 spectra 2024-10-04 06:17:07 - Info: Collecting PSMs... C:\Users\dubia\anaconda3\Lib\site-packages\numpy\core\fromnumeric.py:59: FutureWarning: 'DataFrame.swapaxes' is deprecated and will be removed in a future version. Please use 'DataFrame.transpose' instead. return bound(*args, **kwds) 2024-10-04 06:17:26 - Info: Got 186751 PSMs 2024-10-04 06:17:26 - Info: Generating Transitions... 2024-10-04 06:17:34 - Info: Generated 2684021 transitions 2024-10-04 06:17:37 - Info: PSMs successfully converted and stored in 20240927_SW-KF_S1_sup_Slot2-37_1_8056_diatracer.psmpkl. 2024-10-04 06:17:38 - Info: Peaks successfully converted and stored in 20240927_SW-KF_S1_sup_Slot2-37_1_8056_diatracer.peakpkl. 2024-10-04 06:17:38 - Info: Total elapsed time 4.55 minutes. occurred 793 times Executing ['C:\\Users\\dubia\\anaconda3\\Scripts\\easypqp.exe', 'convert', '--unimod', 'C:/Users/dubia/OneDrive/Desktop/FragPipe-jre-22.0/fragpipe/tools/unimod_old.xml', '--max_delta_unimod', '0.02', '--max_delta_ppm', '15.0', '--fragment_types', "['b','y',]", '--enable_unannotated', '--pepxml', "['D:\\\\20240927_SW-KF\\\\PLD_method\\\\output\\\\interact-20240927_SW-KF_S1_total_Slot2-36_1_8055_diatracer.mod.pep.xml']", '--spectra', 'D:\\20240927_SW-KF\\PLD_method\\raw\\20240927_SW-KF_S1_total_Slot2-36_1_8055_diatracer.mzML', '--exclude-range', '-1.5,3.5', '--psms', '20240927_SW-KF_S1_total_Slot2-36_1_8055_diatracer.psmpkl', '--peaks', '20240927_SW-KF_S1_total_Slot2-36_1_8055_diatracer.peakpkl'] 2024-10-04 06:17:42 - Info: Converting ['D:\\20240927_SW-KF\\PLD_method\\output\\interact-20240927_SW-KF_S1_total_Slot2-36_1_8055_diatracer.mod.pep.xml']. 2024-10-04 06:17:42 - Info: Parsing run 20240927_SW-KF_S1_total_Slot2-36_1_8055_diatracer. 2024-10-04 06:17:42 - Info: Parsing pepXML: D:\20240927_SW-KF\PLD_method\output\interact-20240927_SW-KF_S1_total_Slot2-36_1_8055_diatracer.mod.pep.xml 2024-10-04 06:18:04 - Info: 195503 PSMs parsed. 2024-10-04 06:18:04 - Info: Generate theoretical spectra. Warning: unknown modification '216.074623' of residue 'E' - adding it to the database Warning: unknown modification '202.058973' of residue 'D' - adding it to the database Warning: unknown C-terminal modification '87.026746' - adding it to the database Warning: unknown modification '245.101173' of residue 'D' - adding it to the database Warning: unknown modification '259.116823' of residue 'E' - adding it to the database 2024-10-04 06:18:18 - Info: Processing spectra from file D:\20240927_SW-KF\PLD_method\raw\20240927_SW-KF_S1_total_Slot2-36_1_8055_diatracer.mzML. 2024-10-04 06:21:47 - Info: Loaded 1078367 spectra 2024-10-04 06:21:47 - Info: Collecting PSMs... C:\Users\dubia\anaconda3\Lib\site-packages\numpy\core\fromnumeric.py:59: FutureWarning: 'DataFrame.swapaxes' is deprecated and will be removed in a future version. Please use 'DataFrame.transpose' instead. return bound(*args, **kwds) 2024-10-04 06:22:17 - Info: Got 195503 PSMs 2024-10-04 06:22:17 - Info: Generating Transitions... 2024-10-04 06:22:22 - Info: Generated 2775951 transitions 2024-10-04 06:22:25 - Info: PSMs successfully converted and stored in 20240927_SW-KF_S1_total_Slot2-36_1_8055_diatracer.psmpkl. 2024-10-04 06:22:25 - Info: Peaks successfully converted and stored in 20240927_SW-KF_S1_total_Slot2-36_1_8055_diatracer.peakpkl. 2024-10-04 06:22:25 - Info: Total elapsed time 4.72 minutes. occurred 688 times Executing ['C:\\Users\\dubia\\anaconda3\\Scripts\\easypqp.exe', 'convert', '--unimod', 'C:/Users/dubia/OneDrive/Desktop/FragPipe-jre-22.0/fragpipe/tools/unimod_old.xml', '--max_delta_unimod', '0.02', '--max_delta_ppm', '15.0', '--fragment_types', "['b','y',]", '--enable_unannotated', '--pepxml', "['D:\\\\20240927_SW-KF\\\\PLD_method\\\\output\\\\interact-20240927_SW-KF_S2_PLD_Slot2-41_1_8063_diatracer.mod.pep.xml']", '--spectra', 'D:\\20240927_SW-KF\\PLD_method\\raw\\20240927_SW-KF_S2_PLD_Slot2-41_1_8063_diatracer.mzML', '--exclude-range', '-1.5,3.5', '--psms', '20240927_SW-KF_S2_PLD_Slot2-41_1_8063_diatracer.psmpkl', '--peaks', '20240927_SW-KF_S2_PLD_Slot2-41_1_8063_diatracer.peakpkl'] 2024-10-04 06:22:29 - Info: Converting ['D:\\20240927_SW-KF\\PLD_method\\output\\interact-20240927_SW-KF_S2_PLD_Slot2-41_1_8063_diatracer.mod.pep.xml']. 2024-10-04 06:22:29 - Info: Parsing run 20240927_SW-KF_S2_PLD_Slot2-41_1_8063_diatracer. 2024-10-04 06:22:29 - Info: Parsing pepXML: D:\20240927_SW-KF\PLD_method\output\interact-20240927_SW-KF_S2_PLD_Slot2-41_1_8063_diatracer.mod.pep.xml 2024-10-04 06:22:35 - Info: 44936 PSMs parsed. 2024-10-04 06:22:35 - Info: Generate theoretical spectra. Warning: unknown C-terminal modification '87.026746' - adding it to the database Warning: unknown modification '202.058973' of residue 'D' - adding it to the database Warning: unknown modification '216.074623' of residue 'E' - adding it to the database Warning: unknown modification '259.116823' of residue 'E' - adding it to the database Warning: unknown modification '245.101173' of residue 'D' - adding it to the database 2024-10-04 06:22:38 - Info: Processing spectra from file D:\20240927_SW-KF\PLD_method\raw\20240927_SW-KF_S2_PLD_Slot2-41_1_8063_diatracer.mzML. 2024-10-04 06:25:04 - Info: Loaded 740867 spectra 2024-10-04 06:25:04 - Info: Collecting PSMs... C:\Users\dubia\anaconda3\Lib\site-packages\numpy\core\fromnumeric.py:59: FutureWarning: 'DataFrame.swapaxes' is deprecated and will be removed in a future version. Please use 'DataFrame.transpose' instead. return bound(*args, **kwds) 2024-10-04 06:25:11 - Info: Got 44936 PSMs 2024-10-04 06:25:11 - Info: Generating Transitions... 2024-10-04 06:25:12 - Info: Generated 541643 transitions 2024-10-04 06:25:14 - Info: PSMs successfully converted and stored in 20240927_SW-KF_S2_PLD_Slot2-41_1_8063_diatracer.psmpkl. 2024-10-04 06:25:14 - Info: Peaks successfully converted and stored in 20240927_SW-KF_S2_PLD_Slot2-41_1_8063_diatracer.peakpkl. 2024-10-04 06:25:14 - Info: Total elapsed time 2.74 minutes. occurred 434 times Executing ['C:\\Users\\dubia\\anaconda3\\Scripts\\easypqp.exe', 'convert', '--unimod', 'C:/Users/dubia/OneDrive/Desktop/FragPipe-jre-22.0/fragpipe/tools/unimod_old.xml', '--max_delta_unimod', '0.02', '--max_delta_ppm', '15.0', '--fragment_types', "['b','y',]", '--enable_unannotated', '--pepxml', "['D:\\\\20240927_SW-KF\\\\PLD_method\\\\output\\\\interact-20240927_SW-KF_S2_sup_Slot2-40_1_8061_diatracer.mod.pep.xml']", '--spectra', 'D:\\20240927_SW-KF\\PLD_method\\raw\\20240927_SW-KF_S2_sup_Slot2-40_1_8061_diatracer.mzML', '--exclude-range', '-1.5,3.5', '--psms', '20240927_SW-KF_S2_sup_Slot2-40_1_8061_diatracer.psmpkl', '--peaks', '20240927_SW-KF_S2_sup_Slot2-40_1_8061_diatracer.peakpkl'] 2024-10-04 06:25:17 - Info: Converting ['D:\\20240927_SW-KF\\PLD_method\\output\\interact-20240927_SW-KF_S2_sup_Slot2-40_1_8061_diatracer.mod.pep.xml']. 2024-10-04 06:25:17 - Info: Parsing run 20240927_SW-KF_S2_sup_Slot2-40_1_8061_diatracer. 2024-10-04 06:25:17 - Info: Parsing pepXML: D:\20240927_SW-KF\PLD_method\output\interact-20240927_SW-KF_S2_sup_Slot2-40_1_8061_diatracer.mod.pep.xml 2024-10-04 06:25:38 - Info: 189300 PSMs parsed. 2024-10-04 06:25:38 - Info: Generate theoretical spectra. Warning: unknown C-terminal modification '87.026746' - adding it to the database Warning: unknown modification '216.074623' of residue 'E' - adding it to the database Warning: unknown modification '202.058973' of residue 'D' - adding it to the database Warning: unknown modification '259.116823' of residue 'E' - adding it to the database Warning: unknown modification '245.101173' of residue 'D' - adding it to the database 2024-10-04 06:25:52 - Info: Processing spectra from file D:\20240927_SW-KF\PLD_method\raw\20240927_SW-KF_S2_sup_Slot2-40_1_8061_diatracer.mzML. 2024-10-04 06:29:22 - Info: Loaded 1081177 spectra 2024-10-04 06:29:22 - Info: Collecting PSMs... C:\Users\dubia\anaconda3\Lib\site-packages\numpy\core\fromnumeric.py:59: FutureWarning: 'DataFrame.swapaxes' is deprecated and will be removed in a future version. Please use 'DataFrame.transpose' instead. return bound(*args, **kwds) 2024-10-04 06:29:45 - Info: Got 189300 PSMs 2024-10-04 06:29:45 - Info: Generating Transitions... 2024-10-04 06:29:49 - Info: Generated 2759609 transitions 2024-10-04 06:29:53 - Info: PSMs successfully converted and stored in 20240927_SW-KF_S2_sup_Slot2-40_1_8061_diatracer.psmpkl. 2024-10-04 06:29:53 - Info: Peaks successfully converted and stored in 20240927_SW-KF_S2_sup_Slot2-40_1_8061_diatracer.peakpkl. 2024-10-04 06:29:53 - Info: Total elapsed time 4.60 minutes. occurred 748 times Executing ['C:\\Users\\dubia\\anaconda3\\Scripts\\easypqp.exe', 'convert', '--unimod', 'C:/Users/dubia/OneDrive/Desktop/FragPipe-jre-22.0/fragpipe/tools/unimod_old.xml', '--max_delta_unimod', '0.02', '--max_delta_ppm', '15.0', '--fragment_types', "['b','y',]", '--enable_unannotated', '--pepxml', "['D:\\\\20240927_SW-KF\\\\PLD_method\\\\output\\\\interact-20240927_SW-KF_S2_total_Slot2-39_1_8060_diatracer.mod.pep.xml']", '--spectra', 'D:\\20240927_SW-KF\\PLD_method\\raw\\20240927_SW-KF_S2_total_Slot2-39_1_8060_diatracer.mzML', '--exclude-range', '-1.5,3.5', '--psms', '20240927_SW-KF_S2_total_Slot2-39_1_8060_diatracer.psmpkl', '--peaks', '20240927_SW-KF_S2_total_Slot2-39_1_8060_diatracer.peakpkl'] 2024-10-04 06:29:57 - Info: Converting ['D:\\20240927_SW-KF\\PLD_method\\output\\interact-20240927_SW-KF_S2_total_Slot2-39_1_8060_diatracer.mod.pep.xml']. 2024-10-04 06:29:57 - Info: Parsing run 20240927_SW-KF_S2_total_Slot2-39_1_8060_diatracer. 2024-10-04 06:29:57 - Info: Parsing pepXML: D:\20240927_SW-KF\PLD_method\output\interact-20240927_SW-KF_S2_total_Slot2-39_1_8060_diatracer.mod.pep.xml 2024-10-04 06:30:19 - Info: 199305 PSMs parsed. 2024-10-04 06:30:19 - Info: Generate theoretical spectra. Warning: unknown C-terminal modification '87.026746' - adding it to the database Warning: unknown modification '202.058973' of residue 'D' - adding it to the database Warning: unknown modification '216.074623' of residue 'E' - adding it to the database occurred 2 times Warning: unknown modification '259.116823' of residue 'E' - adding it to the database Warning: unknown C-terminal modification '87.026746' - adding it to the database Warning: unknown modification '245.101173' of residue 'D' - adding it to the database 2024-10-04 06:30:35 - Info: Processing spectra from file D:\20240927_SW-KF\PLD_method\raw\20240927_SW-KF_S2_total_Slot2-39_1_8060_diatracer.mzML. 2024-10-04 06:34:11 - Info: Loaded 1112894 spectra 2024-10-04 06:34:11 - Info: Collecting PSMs... C:\Users\dubia\anaconda3\Lib\site-packages\numpy\core\fromnumeric.py:59: FutureWarning: 'DataFrame.swapaxes' is deprecated and will be removed in a future version. Please use 'DataFrame.transpose' instead. return bound(*args, **kwds) 2024-10-04 06:34:34 - Info: Got 199305 PSMs 2024-10-04 06:34:34 - Info: Generating Transitions... 2024-10-04 06:34:39 - Info: Generated 2853558 transitions 2024-10-04 06:34:42 - Info: PSMs successfully converted and stored in 20240927_SW-KF_S2_total_Slot2-39_1_8060_diatracer.psmpkl. 2024-10-04 06:34:43 - Info: Peaks successfully converted and stored in 20240927_SW-KF_S2_total_Slot2-39_1_8060_diatracer.peakpkl. 2024-10-04 06:34:43 - Info: Total elapsed time 4.76 minutes. occurred 825 times 2024-10-04 06:34:46 - Info: There are psm.tsv and peptide.tsv. Will ignore --psm_fdr_threshold, --peptide_fdr_threshold, --protein_fdr_threshold, --pi0_lambda, --proteotypic, and --no-proteotypic. 2024-10-04 06:34:46 - Info: Reading file D:\20240927_SW-KF\PLD_method\output\20240927_SW-KF_S1_PLD_Slot2-38_1_8058_diatracer.psmpkl. 2024-10-04 06:34:47 - Info: Reading file D:\20240927_SW-KF\PLD_method\output\20240927_SW-KF_S1_sup_Slot2-37_1_8056_diatracer.psmpkl. 2024-10-04 06:34:47 - Info: Reading file D:\20240927_SW-KF\PLD_method\output\20240927_SW-KF_S1_total_Slot2-36_1_8055_diatracer.psmpkl. 2024-10-04 06:34:47 - Info: Reading file D:\20240927_SW-KF\PLD_method\output\20240927_SW-KF_S2_PLD_Slot2-41_1_8063_diatracer.psmpkl. 2024-10-04 06:34:47 - Info: Reading file D:\20240927_SW-KF\PLD_method\output\20240927_SW-KF_S2_sup_Slot2-40_1_8061_diatracer.psmpkl. 2024-10-04 06:34:47 - Info: Reading file D:\20240927_SW-KF\PLD_method\output\20240927_SW-KF_S2_total_Slot2-39_1_8060_diatracer.psmpkl. 2024-10-04 06:34:49 - Info: In total 897993 PSMs loaded. 2024-10-04 06:35:04 - Info: 760829 redundant PSMs identified after filtering with D:\20240927_SW-KF\PLD_method\output\psm.tsv and D:\20240927_SW-KF\PLD_method\output\peptide.tsv 2024-10-04 06:35:05 - base_name modified_peptide 0 20240927_SW-KF_S1_PLD_Slot2-38_1_8058_diatracer 24568 1 20240927_SW-KF_S1_sup_Slot2-37_1_8056_diatracer 55892 2 20240927_SW-KF_S1_total_Slot2-36_1_8055_diatracer 58530 3 20240927_SW-KF_S2_PLD_Slot2-41_1_8063_diatracer 13925 4 20240927_SW-KF_S2_sup_Slot2-40_1_8061_diatracer 56242 5 20240927_SW-KF_S2_total_Slot2-39_1_8060_diatracer 59039 2024-10-04 06:35:05 - Info: easypqp_rt_alignment_20240927_SW-KF_S1_PLD_Slot2-38_1_8058_diatracer; Peptide overlap between run and reference: 18047. 2024-10-04 06:35:10 - Info: easypqp_rt_alignment_20240927_SW-KF_S1_PLD_Slot2-38_1_8058_diatracer; Lowess fraction used: 0.08. 2024-10-04 06:35:11 - Info: easypqp_rt_alignment_20240927_SW-KF_S1_sup_Slot2-37_1_8056_diatracer; Peptide overlap between run and reference: 46896. 2024-10-04 06:35:14 - Info: easypqp_rt_alignment_20240927_SW-KF_S1_sup_Slot2-37_1_8056_diatracer; Lowess fraction used: 0.01. 2024-10-04 06:35:15 - Info: easypqp_rt_alignment_20240927_SW-KF_S1_total_Slot2-36_1_8055_diatracer; Peptide overlap between run and reference: 49506. 2024-10-04 06:35:17 - Info: easypqp_rt_alignment_20240927_SW-KF_S1_total_Slot2-36_1_8055_diatracer; Lowess fraction used: 0.02. 2024-10-04 06:35:18 - Info: easypqp_rt_alignment_20240927_SW-KF_S2_PLD_Slot2-41_1_8063_diatracer; Peptide overlap between run and reference: 11334. 2024-10-04 06:35:19 - Info: easypqp_rt_alignment_20240927_SW-KF_S2_PLD_Slot2-41_1_8063_diatracer; Lowess fraction used: 0.04. 2024-10-04 06:35:19 - Info: easypqp_rt_alignment_20240927_SW-KF_S2_sup_Slot2-40_1_8061_diatracer; Peptide overlap between run and reference: 47406. 2024-10-04 06:35:21 - Info: easypqp_rt_alignment_20240927_SW-KF_S2_sup_Slot2-40_1_8061_diatracer; Lowess fraction used: 0.02. 2024-10-04 06:35:21 - Info: easypqp_rt_alignment_20240927_SW-KF_S2_total_Slot2-39_1_8060_diatracer; Peptide overlap between run and reference: 59039. 2024-10-04 06:35:24 - Info: easypqp_rt_alignment_20240927_SW-KF_S2_total_Slot2-39_1_8060_diatracer; Lowess fraction used: 0.08. 2024-10-04 06:35:25 - base_name modified_peptide 0 20240927_SW-KF_S1_PLD_Slot2-38_1_8058_diatracer 24568 1 20240927_SW-KF_S1_sup_Slot2-37_1_8056_diatracer 55892 2 20240927_SW-KF_S1_total_Slot2-36_1_8055_diatracer 58530 3 20240927_SW-KF_S2_PLD_Slot2-41_1_8063_diatracer 13925 4 20240927_SW-KF_S2_sup_Slot2-40_1_8061_diatracer 56242 5 20240927_SW-KF_S2_total_Slot2-39_1_8060_diatracer 59039 2024-10-04 06:35:26 - Info: easypqp_im_alignment_20240927_SW-KF_S1_PLD_Slot2-38_1_8058_diatracer; Peptide overlap between run and reference: 18047. 2024-10-04 06:35:26 - Info: easypqp_im_alignment_20240927_SW-KF_S1_sup_Slot2-37_1_8056_diatracer; Peptide overlap between run and reference: 46896. 2024-10-04 06:35:28 - Info: easypqp_im_alignment_20240927_SW-KF_S1_total_Slot2-36_1_8055_diatracer; Peptide overlap between run and reference: 49506. 2024-10-04 06:35:29 - Info: easypqp_im_alignment_20240927_SW-KF_S2_PLD_Slot2-41_1_8063_diatracer; Peptide overlap between run and reference: 11334. 2024-10-04 06:35:29 - Info: easypqp_im_alignment_20240927_SW-KF_S2_sup_Slot2-40_1_8061_diatracer; Peptide overlap between run and reference: 47406. 2024-10-04 06:35:30 - Info: easypqp_im_alignment_20240927_SW-KF_S2_total_Slot2-39_1_8060_diatracer; Peptide overlap between run and reference: 59039. 2024-10-04 06:35:33 - Info: Parsing file D:\20240927_SW-KF\PLD_method\output\20240927_SW-KF_S1_PLD_Slot2-38_1_8058_diatracer.peakpkl. 2024-10-04 06:35:36 - Info: Parsing file D:\20240927_SW-KF\PLD_method\output\20240927_SW-KF_S1_sup_Slot2-37_1_8056_diatracer.peakpkl. 2024-10-04 06:35:44 - Info: Parsing file D:\20240927_SW-KF\PLD_method\output\20240927_SW-KF_S1_total_Slot2-36_1_8055_diatracer.peakpkl. 2024-10-04 06:35:53 - Info: Parsing file D:\20240927_SW-KF\PLD_method\output\20240927_SW-KF_S2_PLD_Slot2-41_1_8063_diatracer.peakpkl. 2024-10-04 06:35:55 - Info: Parsing file D:\20240927_SW-KF\PLD_method\output\20240927_SW-KF_S2_sup_Slot2-40_1_8061_diatracer.peakpkl. 2024-10-04 06:36:03 - Info: Parsing file D:\20240927_SW-KF\PLD_method\output\20240927_SW-KF_S2_total_Slot2-39_1_8060_diatracer.peakpkl. 2024-10-04 06:36:27 - Info: Library successfully generated. 2024-10-04 06:36:27 - Info: Total elapsed time: 1.67 minutes. C:\Users\dubia\OneDrive\Desktop\FragPipe-jre-22.0\fragpipe\tools\speclib\gen_con_spec_lib.py:375: FutureWarning: A value is trying to be set on a copy of a DataFrame or Series through chained assignment using an inplace method. The behavior will change in pandas 3.0. This inplace method will never work because the intermediate object on which we are setting values always behaves as a copy. For example, when doing 'df[col].method(value, inplace=True)', try using 'df.method({col: value}, inplace=True)' or df[col] = df[col].method(value) instead, to perform the operation inplace on the original object. df_lib['Proteotypic'].fillna(0, inplace=True) Done generating spectral library 2024-10-04 06:37:12,215:INFO:took 0:28:41.267437 Process 'SpecLibGen' finished, exit code: 0 DIA-NN [Work dir: D:\20240927_SW-KF\PLD_method\output] C:\Users\dubia\OneDrive\Desktop\FragPipe-jre-22.0\fragpipe\tools\diann\1.8.2_beta_8\win\DiaNN.exe --lib library.tsv --threads 23 --verbose 1 --out diann-output\report.tsv --qvalue 0.01 --matrices --no-prot-inf --smart-profiling --no-quant-files --peak-center --no-ifs-removal --report-lib-info --cfg D:\20240927_SW-KF\PLD_method\output\filelist_diann.txt DIA-NN 1.8.2 beta 8 (Data-Independent Acquisition by Neural Networks) Compiled on Sep 15 2022 18:28:57 Current date and time: Fri Oct 4 06:37:13 2024 CPU: GenuineIntel 12th Gen Intel(R) Core(TM) i7-12700H SIMD instructions: AVX AVX2 FMA SSE4.1 SSE4.2 Logical CPU cores: 20 Thread number set to 23 Output will be filtered at 0.01 FDR Precursor/protein x samples expression level matrices will be saved along with the main report Protein inference will not be performed When generating a spectral library, in silico predicted spectra will be retained if deemed more reliable than experimental ones .quant files will not be saved to the disk Fixed-width center of each elution peak will be used for quantification Interference removal from fragment elution curves disabled DIA-NN will optimise the mass accuracy automatically using the first run in the experiment. This is useful primarily for quick initial analyses, when it is not yet known which mass accuracy setting works best for a particular acquisition scheme. 6 files will be processed [0:00] Loading spectral library library.tsv [0:06] Spectral library loaded: 6870 protein isoforms, 6870 protein groups and 80916 precursors in 68290 elution groups. [0:06] Initialising library [0:06] Saving the library to library.tsv.speclib [0:06] File #1/6 [0:06] Loading run D:\20240927_SW-KF\PLD_method\raw\20240927_SW-KF_S1_PLD_Slot2-38_1_8058.d For most diaPASEF datasets it is better to manually fix both the MS1 and MS2 mass accuracies to values in the range 10-15 ppm. [0:54] 80916 library precursors are potentially detectable [0:54] Processing... [1:01] RT window set to 0.976757 [1:01] Ion mobility window set to 0.0147316 [1:01] Peak width: 4.996 [1:01] Scan window radius set to 10 [1:01] Recommended MS1 mass accuracy setting: 13.6953 ppm [1:06] Optimised mass accuracy: 15.4327 ppm [1:23] Removing low confidence identifications [1:23] Removing interfering precursors [1:26] Training neural networks: 76398 targets, 77490 decoys [1:31] Number of IDs at 0.01 FDR: 52569 [1:32] Calculating protein q-values [1:32] Number of protein isoforms identified at 1% FDR: 5787 (precursor-level), 5618 (protein-level) (inference performed using proteotypic peptides only) [1:32] Quantification [1:35] File #2/6 [1:35] Loading run D:\20240927_SW-KF\PLD_method\raw\20240927_SW-KF_S2_sup_Slot2-40_1_8061.d [2:19] 80916 library precursors are potentially detectable [2:19] Processing... [2:22] RT window set to 0.979977 [2:22] Ion mobility window set to 0.0128568 [2:22] Recommended MS1 mass accuracy setting: 14.0939 ppm [2:36] Removing low confidence identifications [2:36] Removing interfering precursors [2:39] Training neural networks: 77215 targets, 76166 decoys [2:44] Number of IDs at 0.01 FDR: 73039 [2:46] Calculating protein q-values [2:46] Number of protein isoforms identified at 1% FDR: 6606 (precursor-level), 6589 (protein-level) (inference performed using proteotypic peptides only) [2:46] Quantification [2:49] File #3/6 [2:49] Loading run D:\20240927_SW-KF\PLD_method\raw\20240927_SW-KF_S2_total_Slot2-39_1_8060.d [3:33] 80916 library precursors are potentially detectable [3:33] Processing... [3:35] RT window set to 0.983175 [3:35] Ion mobility window set to 0.0129505 [3:35] Recommended MS1 mass accuracy setting: 13.2947 ppm [3:49] Removing low confidence identifications [3:49] Removing interfering precursors [3:52] Training neural networks: 77272 targets, 76198 decoys [3:57] Number of IDs at 0.01 FDR: 74031 [3:59] Calculating protein q-values [3:59] Number of protein isoforms identified at 1% FDR: 6618 (precursor-level), 6612 (protein-level) (inference performed using proteotypic peptides only) [3:59] Quantification [4:03] File #4/6 [4:03] Loading run D:\20240927_SW-KF\PLD_method\raw\20240927_SW-KF_S1_sup_Slot2-37_1_8056.d [4:46] 80916 library precursors are potentially detectable [4:46] Processing... [4:48] RT window set to 0.968604 [4:48] Ion mobility window set to 0.012755 [4:48] Recommended MS1 mass accuracy setting: 12.8255 ppm [5:02] Removing low confidence identifications [5:02] Removing interfering precursors [5:05] Training neural networks: 77026 targets, 75344 decoys [5:10] Number of IDs at 0.01 FDR: 73352 [5:11] Calculating protein q-values [5:11] Number of protein isoforms identified at 1% FDR: 6605 (precursor-level), 6590 (protein-level) (inference performed using proteotypic peptides only) [5:11] Quantification [5:16] File #5/6 [5:16] Loading run D:\20240927_SW-KF\PLD_method\raw\20240927_SW-KF_S1_total_Slot2-36_1_8055.d [5:58] 80916 library precursors are potentially detectable [5:58] Processing... [6:01] RT window set to 0.983664 [6:01] Ion mobility window set to 0.0128464 [6:01] Recommended MS1 mass accuracy setting: 13.9401 ppm [6:15] Removing low confidence identifications [6:15] Removing interfering precursors [6:18] Training neural networks: 77241 targets, 75628 decoys [6:23] Number of IDs at 0.01 FDR: 74215 [6:25] Calculating protein q-values [6:25] Number of protein isoforms identified at 1% FDR: 6617 (precursor-level), 6603 (protein-level) (inference performed using proteotypic peptides only) [6:25] Quantification [6:29] File #6/6 [6:29] Loading run D:\20240927_SW-KF\PLD_method\raw\20240927_SW-KF_S2_PLD_Slot2-41_1_8063.d [7:09] 80916 library precursors are potentially detectable [7:09] Processing... [7:18] RT window set to 0.975762 [7:18] Ion mobility window set to 0.0145434 [7:18] Recommended MS1 mass accuracy setting: 14.1188 ppm [7:33] Removing low confidence identifications [7:33] Removing interfering precursors [7:36] Training neural networks: 74785 targets, 74135 decoys [7:40] Number of IDs at 0.01 FDR: 40980 [7:41] Calculating protein q-values [7:41] Number of protein isoforms identified at 1% FDR: 5263 (precursor-level), 5074 (protein-level) (inference performed using proteotypic peptides only) [7:41] Quantification [7:45] Cross-run analysis [7:45] Reading quantification information: 6 files [7:46] Quantifying peptides [7:48] Quantifying proteins [7:48] Calculating q-values for protein and gene groups [7:49] Calculating global q-values for protein and gene groups [7:49] Writing report [8:19] Report saved to diann-output\report.tsv. [8:19] Saving precursor levels matrix [8:20] Precursor levels matrix (1% precursor and protein group FDR) saved to diann-output\report.pr_matrix.tsv. [8:20] Saving protein group levels matrix [8:20] Protein group levels matrix (1% precursor FDR and protein group FDR) saved to diann-output\report.pg_matrix.tsv. [8:20] Saving gene group levels matrix [8:20] Gene groups levels matrix (1% precursor FDR and protein group FDR) saved to diann-output\report.gg_matrix.tsv. [8:20] Saving unique genes levels matrix [8:20] Unique genes levels matrix (1% precursor FDR and protein group FDR) saved to diann-output\report.unique_genes_matrix.tsv. [8:20] Stats report saved to diann-output\report.stats.tsv [8:20] Log saved to diann-output\report.log.txt Finished Process 'DIA-NN' finished, exit code: 0 DIA-NN [Work dir: D:\20240927_SW-KF\PLD_method\output] C:\Users\dubia\OneDrive\Desktop\FragPipe-jre-22.0\fragpipe\tools\diann\1.8.2_beta_8\win\dia-nn-plotter.exe diann-output\report.stats.tsv diann-output\report.tsv diann-output\report.pdf Generating report. Stats, main report, output file: diann-output\report.stats.tsv, diann-output\report.tsv, diann-output\report.pdf Process 'DIA-NN' finished, exit code: 0 DIA-NN: Propagate information [Work dir: D:\20240927_SW-KF\PLD_method\output\diann-output] C:\Users\dubia\OneDrive\Desktop\FragPipe-jre-22.0\fragpipe\jre\bin\java.exe -cp C:\Users\dubia\OneDrive\Desktop\FragPipe-jre-22.0\fragpipe\tools\batmass-io-1.33.4.jar;C:\Users\dubia\OneDrive\Desktop\FragPipe-jre-22.0\fragpipe\lib\fragpipe-22.0.jar;C:\Users\dubia\OneDrive\Desktop\FragPipe-jre-22.0\fragpipe\lib\fragpipe-22.0.jar com.dmtavt.fragpipe.tools.diann.Propagation D:\20240927_SW-KF\PLD_method\output java.lang.ArrayIndexOutOfBoundsException: Index 0 out of bounds for length 0 at com.dmtavt.fragpipe.tools.diann.LocalizedPeptide.getBestLocalization(LocalizedPeptide.java:89) at com.dmtavt.fragpipe.tools.diann.Propagation.editReport(Propagation.java:290) at com.dmtavt.fragpipe.tools.diann.Propagation.propagate(Propagation.java:190) at com.dmtavt.fragpipe.tools.diann.Propagation.main(Propagation.java:69) Process 'DIA-NN: Propagate information' finished, exit code: 1 Process returned non-zero exit code, stopping ~~~~~~~~~~~~~~~~~~~~ Cancelling 2 remaining tasks