diff --git a/package.json b/package.json index c5d460fc..d075553f 100644 --- a/package.json +++ b/package.json @@ -28,7 +28,7 @@ "@hyphy_software/gard-analysis-result-visualization": "https://api.observablehq.com/@hyphy_software/gard-analysis-result-visualization@916.tgz?v=3", "@hyphy_software/multi-hit-analysis-result-visualization": "https://api.observablehq.com/@hyphy_software/multi-hit-analysis-result-visualization.tgz?v=3", "@observablehq/runtime": "4", - "alignment.js": "^0.3.0", + "alignment.js": "0.3.0", "bootstrap": "4.x", "chi-squared": "^1.1.0", "circos": "^2.1.0", diff --git a/yarn.lock b/yarn.lock index 061163bf..be366a2d 100644 --- a/yarn.lock +++ b/yarn.lock @@ -3801,7 +3801,7 @@ copy-descriptor@^0.1.0: resolved "https://registry.yarnpkg.com/copy-descriptor/-/copy-descriptor-0.1.1.tgz#676f6eb3c39997c2ee1ac3a924fd6124748f578d" integrity sha512-XgZ0pFcakEUlbwQEVNg3+QAis1FyTL3Qel9FYy8pSkQqoG3PNoT0bOCQtOXcOkur21r2Eq2kI+IE+gsmAEVlYw== -copy-to-clipboard@^3: +copy-to-clipboard@^3.3.1: version "3.3.1" resolved "https://registry.yarnpkg.com/copy-to-clipboard/-/copy-to-clipboard-3.3.1.tgz#115aa1a9998ffab6196f93076ad6da3b913662ae" integrity sha512-i13qo6kIHTTpCm8/Wup+0b1mVWETvu2kIMzKoK8FpkLkFxlt0znUAHcMzox+T8sPlqtZXq3CulEjQHsYiGFJUw== @@ -5684,43 +5684,7 @@ expose-loader@^3.0.0: resolved "https://registry.yarnpkg.com/expose-loader/-/expose-loader-3.1.0.tgz#7a0bdecb345b921ca238a8c4715a4ea7e227213f" integrity sha512-2RExSo0yJiqP+xiUue13jQa2IHE8kLDzTI7b6kn+vUlBVvlzNSiLDzo4e5Pp5J039usvTUnxZ8sUOhv0Kg15NA== -express@^4.16.2, express@^4.16.4: - version "4.17.1" - resolved "https://registry.yarnpkg.com/express/-/express-4.17.1.tgz#4491fc38605cf51f8629d39c2b5d026f98a4c134" - integrity sha512-mHJ9O79RqluphRrcw2X/GTh3k9tVv8YcoyY4Kkh4WDMUYKRZUq0h1o0w2rrrxBqM7VoeUVqgb27xlEMXTnYt4g== - dependencies: - accepts "~1.3.7" - array-flatten "1.1.1" - body-parser "1.19.0" - content-disposition "0.5.3" - content-type "~1.0.4" - cookie "0.4.0" - cookie-signature "1.0.6" - debug "2.6.9" - depd "~1.1.2" - encodeurl "~1.0.2" - escape-html "~1.0.3" - etag "~1.8.1" - finalhandler "~1.1.2" - fresh "0.5.2" - merge-descriptors "1.0.1" - methods "~1.1.2" - on-finished "~2.3.0" - parseurl "~1.3.3" - path-to-regexp "0.1.7" - proxy-addr "~2.0.5" - qs "6.7.0" - range-parser "~1.2.1" - safe-buffer "5.1.2" - send "0.17.1" - serve-static "1.14.1" - setprototypeof "1.1.1" - statuses "~1.5.0" - type-is "~1.6.18" - utils-merge "1.0.1" - vary "~1.1.2" - -express@^4.17.1: +express@^4.16.2, express@^4.17.1: version "4.18.1" resolved "https://registry.yarnpkg.com/express/-/express-4.18.1.tgz#7797de8b9c72c857b9cd0e14a5eea80666267caf" integrity sha512-zZBcOX9TfehHQhtupq57OF8lFZ3UZi08Y97dwFCkD8p9d/d2Y3M+ykKcwaMDEL+4qyUolgBDX6AblpR3fL212Q== @@ -5757,6 +5721,42 @@ express@^4.17.1: utils-merge "1.0.1" vary "~1.1.2" +express@^4.16.4: + version "4.17.1" + resolved "https://registry.yarnpkg.com/express/-/express-4.17.1.tgz#4491fc38605cf51f8629d39c2b5d026f98a4c134" + integrity sha512-mHJ9O79RqluphRrcw2X/GTh3k9tVv8YcoyY4Kkh4WDMUYKRZUq0h1o0w2rrrxBqM7VoeUVqgb27xlEMXTnYt4g== + dependencies: + accepts "~1.3.7" + array-flatten "1.1.1" + body-parser "1.19.0" + content-disposition "0.5.3" + content-type "~1.0.4" + cookie "0.4.0" + cookie-signature "1.0.6" + debug "2.6.9" + depd "~1.1.2" + encodeurl "~1.0.2" + escape-html "~1.0.3" + etag "~1.8.1" + finalhandler "~1.1.2" + fresh "0.5.2" + merge-descriptors "1.0.1" + methods "~1.1.2" + on-finished "~2.3.0" + parseurl "~1.3.3" + path-to-regexp "0.1.7" + proxy-addr "~2.0.5" + qs "6.7.0" + range-parser "~1.2.1" + safe-buffer "5.1.2" + send "0.17.1" + serve-static "1.14.1" + setprototypeof "1.1.1" + statuses "~1.5.0" + type-is "~1.6.18" + utils-merge "1.0.1" + vary "~1.1.2" + ext@^1.1.2: version "1.4.0" resolved "https://registry.yarnpkg.com/ext/-/ext-1.4.0.tgz#89ae7a07158f79d35517882904324077e4379244" @@ -7930,14 +7930,16 @@ jquery-ui-bundle@^1.11.4: integrity sha1-1r4uTDd0lOI3ixyuKSCpHRGC2MQ= jquery-ui-dist@^1.12.1: - version "1.12.1" - resolved "https://registry.yarnpkg.com/jquery-ui-dist/-/jquery-ui-dist-1.12.1.tgz#5c0815d3cc6f90ff5faaf5b268a6e23b4ca904fa" - integrity sha1-XAgV08xvkP9fqvWyaKbiO0ypBPo= + version "1.13.1" + resolved "https://registry.yarnpkg.com/jquery-ui-dist/-/jquery-ui-dist-1.13.1.tgz#47dcc1bf9cec141221ece59b2c8eaabad846ec0e" + integrity sha512-Y711Pu4BRVrAlL58KSxX4ail74jaCJZaZcdNDLava+MgZeNwmVWmyYiK7KxyoJu1MB73eSunjJvYDbOuNrOA7w== + dependencies: + jquery ">=1.8.0 <4.0.0" jquery-ui@1.x: - version "1.13.0" - resolved "https://registry.yarnpkg.com/jquery-ui/-/jquery-ui-1.13.0.tgz#ab5ac65f37ca093c51b3478c4097f55bbc008f36" - integrity sha512-Osf7ECXNTYHtKBkn9xzbIf9kifNrBhfywFEKxOeB/OVctVmLlouV9mfc2qXCp6uyO4Pn72PXKOnj09qXetopCw== + version "1.13.1" + resolved "https://registry.yarnpkg.com/jquery-ui/-/jquery-ui-1.13.1.tgz#d0b7a42e73a04c31bb5706adf86f6f8942f64eaa" + integrity sha512-2VlU59N5P4HaumDK1Z3XEVjSvegFbEOQRgpHUBaB2Ak98Axl3hFhJ6RFcNQNuk9SfL6WxIbuLst8dW/U56NSiA== dependencies: jquery ">=1.8.0 <4.0.0" @@ -9978,16 +9980,7 @@ prop-types-extra@^1.1.0: react-is "^16.3.2" warning "^4.0.0" -prop-types@^15.5.10, prop-types@^15.5.8, prop-types@^15.6.1, prop-types@^15.6.2: - version "15.7.2" - resolved "https://registry.yarnpkg.com/prop-types/-/prop-types-15.7.2.tgz#52c41e75b8c87e72b9d9360e0206b99dcbffa6c5" - integrity sha512-8QQikdH7//R2vurIJSutZ1smHYTcLpRWEOlHnzcWHmBYrOGUysKwSsrC89BCiFj3CbrfJ/nXFdJepOVrY1GCHQ== - dependencies: - loose-envify "^1.4.0" - object-assign "^4.1.1" - react-is "^16.8.1" - -prop-types@^15.7.2, prop-types@^15.8.1: +prop-types@^15.5.10, prop-types@^15.7.2, prop-types@^15.8.1: version "15.8.1" resolved "https://registry.yarnpkg.com/prop-types/-/prop-types-15.8.1.tgz#67d87bf1a694f48435cf332c24af10214a3140b5" integrity sha512-oj87CgZICdulUohogVAR7AjlC0327U4el4L6eAvOqCeudMDVU0NThNaV+b9Df4dXgSP1gXMTnPdhfe/2qDH5cg== @@ -9996,6 +9989,15 @@ prop-types@^15.7.2, prop-types@^15.8.1: object-assign "^4.1.1" react-is "^16.13.1" +prop-types@^15.6.1, prop-types@^15.6.2: + version "15.7.2" + resolved "https://registry.yarnpkg.com/prop-types/-/prop-types-15.7.2.tgz#52c41e75b8c87e72b9d9360e0206b99dcbffa6c5" + integrity sha512-8QQikdH7//R2vurIJSutZ1smHYTcLpRWEOlHnzcWHmBYrOGUysKwSsrC89BCiFj3CbrfJ/nXFdJepOVrY1GCHQ== + dependencies: + loose-envify "^1.4.0" + object-assign "^4.1.1" + react-is "^16.8.1" + proxy-addr@~2.0.5, proxy-addr@~2.0.7: version "2.0.7" resolved "https://registry.yarnpkg.com/proxy-addr/-/proxy-addr-2.0.7.tgz#f19fe69ceab311eeb94b42e70e8c2070f9ba1025" @@ -10183,12 +10185,12 @@ react-bootstrap@^1.0.0-beta.9: warning "^4.0.3" react-copy-to-clipboard@^5.0.0: - version "5.0.4" - resolved "https://registry.yarnpkg.com/react-copy-to-clipboard/-/react-copy-to-clipboard-5.0.4.tgz#42ec519b03eb9413b118af92d1780c403a5f19bf" - integrity sha512-IeVAiNVKjSPeGax/Gmkqfa/+PuMTBhutEvFUaMQLwE2tS0EXrAdgOpWDX26bWTXF3HrioorR7lr08NqeYUWQCQ== + version "5.1.0" + resolved "https://registry.yarnpkg.com/react-copy-to-clipboard/-/react-copy-to-clipboard-5.1.0.tgz#09aae5ec4c62750ccb2e6421a58725eabc41255c" + integrity sha512-k61RsNgAayIJNoy9yDsYzDe/yAZAzEbEgcz3DZMhF686LEyukcE1hzurxe85JandPUG+yTfGVFzuEw3xt8WP/A== dependencies: - copy-to-clipboard "^3" - prop-types "^15.5.8" + copy-to-clipboard "^3.3.1" + prop-types "^15.8.1" react-dom@^16.13.0, react-dom@^16.6.3: version "16.14.0" @@ -10280,9 +10282,9 @@ react-phylotree@0.4.3: underscore "^1.9.1" react-range@^1.8.9: - version "1.8.11" - resolved "https://registry.yarnpkg.com/react-range/-/react-range-1.8.11.tgz#7d9ae1e4a263108566897acee2dde8d5b78901e1" - integrity sha512-LaF5xwYy6u0Rnp0hRBBLKqJx0DmNpW2GqMSoj8OJ0IYiCM7GmSNf0UKxmN4cN0BCb2EwzD3zA9nw6Fkug2c3mg== + version "1.8.12" + resolved "https://registry.yarnpkg.com/react-range/-/react-range-1.8.12.tgz#61fe79421a519a4d77c76838012d895b75ead42f" + integrity sha512-vY2eCNDvKlXtEpl8xx5AQVIBeE4ZZ46dLVL+82f4FcS9XrPqz4+XagPHmq3IPqYuVQ2H4b8UArXzvVAsd/B03Q== react-router-dom@5.1.2: version "5.1.2"