diff --git a/.github/workflows/ci.yaml b/.github/workflows/ci.yaml index aadeadc5..3c8de9e9 100644 --- a/.github/workflows/ci.yaml +++ b/.github/workflows/ci.yaml @@ -15,7 +15,6 @@ jobs: matrix: python-version: [3.7] poetry-version: [1.1.8] - if: ${{ github.event_name == 'pull_request' }} steps: #---------------------------------------------- # cancel any pending actions diff --git a/README.md b/README.md index 533f70b8..51a202df 100644 --- a/README.md +++ b/README.md @@ -1,6 +1,7 @@ [![continuous-integration](https://github.com/vicariousinc/PGMax/actions/workflows/ci.yaml/badge.svg)](https://github.com/vicariousinc/PGMax/actions/workflows/ci.yaml) [![PyPI version](https://badge.fury.io/py/pgmax.svg)](https://badge.fury.io/py/pgmax) [![pre-commit.ci status](https://results.pre-commit.ci/badge/github/vicariousinc/PGMax/master.svg)](https://results.pre-commit.ci/latest/github/vicariousinc/PGMax/master) +[![codecov](https://codecov.io/gh/vicariousinc/PGMax/branch/master/graph/badge.svg?token=FrRlTDCFjk)](https://codecov.io/gh/vicariousinc/PGMax) # PGMax diff --git a/poetry.lock b/poetry.lock index 0c6bece9..d8870028 100644 --- a/poetry.lock +++ b/poetry.lock @@ -1,6 +1,6 @@ [[package]] name = "absl-py" -version = "0.13.0" +version = "0.15.0" description = "Abseil Python Common Libraries, see https://github.com/abseil/abseil-py." category = "main" optional = false @@ -41,19 +41,18 @@ test = ["coverage", "flake8", "pexpect", "wheel"] [[package]] name = "argon2-cffi" -version = "20.1.0" +version = "21.1.0" description = "The secure Argon2 password hashing algorithm." category = "main" optional = false -python-versions = "*" +python-versions = ">=3.5" [package.dependencies] cffi = ">=1.0.0" -six = "*" [package.extras] -dev = ["coverage[toml] (>=5.0.2)", "hypothesis", "pytest", "sphinx", "wheel", "pre-commit"] -docs = ["sphinx"] +dev = ["coverage[toml] (>=5.0.2)", "hypothesis", "pytest", "sphinx", "furo", "wheel", "pre-commit"] +docs = ["sphinx", "furo"] tests = ["coverage[toml] (>=5.0.2)", "hypothesis", "pytest"] [[package]] @@ -114,7 +113,7 @@ testing = ["pytest (>=4.6)", "pytest-flake8", "pytest-cov", "pytest-black (>=0.3 [[package]] name = "bleach" -version = "4.0.0" +version = "4.1.0" description = "An easy safelist-based HTML-sanitizing tool." category = "main" optional = false @@ -127,7 +126,7 @@ webencodings = "*" [[package]] name = "certifi" -version = "2021.5.30" +version = "2021.10.8" description = "Python package for providing Mozilla's CA Bundle." category = "dev" optional = false @@ -135,7 +134,7 @@ python-versions = "*" [[package]] name = "cffi" -version = "1.14.6" +version = "1.15.0" description = "Foreign Function Interface for Python calling C code." category = "main" optional = false @@ -146,7 +145,7 @@ pycparser = "*" [[package]] name = "cfgv" -version = "3.3.0" +version = "3.3.1" description = "Validate configuration and produce human readable error messages." category = "dev" optional = false @@ -154,7 +153,7 @@ python-versions = ">=3.6.1" [[package]] name = "charset-normalizer" -version = "2.0.4" +version = "2.0.7" description = "The Real First Universal Charset Detector. Open, modern and actively maintained alternative to Chardet." category = "dev" optional = false @@ -173,29 +172,26 @@ python-versions = ">=2.7, !=3.0.*, !=3.1.*, !=3.2.*, !=3.3.*, !=3.4.*" [[package]] name = "coverage" -version = "5.5" +version = "6.1.1" description = "Code coverage measurement for Python" category = "dev" optional = false -python-versions = ">=2.7, !=3.0.*, !=3.1.*, !=3.2.*, !=3.3.*, !=3.4.*, <4" +python-versions = ">=3.6" [package.extras] -toml = ["toml"] +toml = ["tomli"] [[package]] name = "cycler" -version = "0.10.0" +version = "0.11.0" description = "Composable style cycles" category = "main" optional = false -python-versions = "*" - -[package.dependencies] -six = "*" +python-versions = ">=3.6" [[package]] name = "debugpy" -version = "1.4.1" +version = "1.5.1" description = "An implementation of the Debug Adapter Protocol for Python" category = "main" optional = false @@ -203,7 +199,7 @@ python-versions = ">=2.7,!=3.0.*,!=3.1.*,!=3.2.*,!=3.3.*,!=3.4.*" [[package]] name = "decorator" -version = "5.0.9" +version = "5.1.0" description = "Decorators for Humans" category = "main" optional = false @@ -219,7 +215,7 @@ python-versions = ">=2.7, !=3.0.*, !=3.1.*, !=3.2.*, !=3.3.*, !=3.4.*" [[package]] name = "distlib" -version = "0.3.2" +version = "0.3.3" description = "Distribution utilities" category = "dev" optional = false @@ -243,11 +239,15 @@ python-versions = ">=2.7" [[package]] name = "filelock" -version = "3.0.12" +version = "3.3.2" description = "A platform independent file lock." category = "dev" optional = false -python-versions = "*" +python-versions = ">=3.6" + +[package.extras] +docs = ["furo (>=2021.8.17b43)", "sphinx (>=4.1)", "sphinx-autodoc-typehints (>=1.12)"] +testing = ["covdefaults (>=1.2.0)", "coverage (>=4)", "pytest (>=4)", "pytest-cov", "pytest-timeout (>=1.4.2)"] [[package]] name = "flatbuffers" @@ -259,7 +259,7 @@ python-versions = "*" [[package]] name = "identify" -version = "2.2.13" +version = "2.3.5" description = "File identification library for Python" category = "dev" optional = false @@ -270,7 +270,7 @@ license = ["editdistance-s"] [[package]] name = "idna" -version = "3.2" +version = "3.3" description = "Internationalized Domain Names in Applications (IDNA)" category = "dev" optional = false @@ -286,7 +286,7 @@ python-versions = ">=2.7, !=3.0.*, !=3.1.*, !=3.2.*, !=3.3.*" [[package]] name = "importlib-metadata" -version = "4.6.4" +version = "4.8.1" description = "Read metadata from Python packages" category = "main" optional = false @@ -301,9 +301,24 @@ docs = ["sphinx", "jaraco.packaging (>=8.2)", "rst.linker (>=1.9)"] perf = ["ipython"] testing = ["pytest (>=4.6)", "pytest-checkdocs (>=2.4)", "pytest-flake8", "pytest-cov", "pytest-enabler (>=1.0.1)", "packaging", "pep517", "pyfakefs", "flufl.flake8", "pytest-perf (>=0.9.2)", "pytest-black (>=0.3.7)", "pytest-mypy", "importlib-resources (>=1.3)"] +[[package]] +name = "importlib-resources" +version = "5.4.0" +description = "Read resources from Python packages" +category = "main" +optional = false +python-versions = ">=3.6" + +[package.dependencies] +zipp = {version = ">=3.1.0", markers = "python_version < \"3.10\""} + +[package.extras] +docs = ["sphinx", "jaraco.packaging (>=8.2)", "rst.linker (>=1.9)"] +testing = ["pytest (>=6)", "pytest-checkdocs (>=2.4)", "pytest-flake8", "pytest-cov", "pytest-enabler (>=1.0.1)", "pytest-black (>=0.3.7)", "pytest-mypy"] + [[package]] name = "ipykernel" -version = "6.2.0" +version = "6.5.0" description = "IPython Kernel for Jupyter" category = "main" optional = false @@ -318,14 +333,14 @@ ipython = ">=7.23.1,<8.0" jupyter-client = "<8.0" matplotlib-inline = ">=0.1.0,<0.2.0" tornado = ">=4.2,<7.0" -traitlets = ">=4.1.0,<6.0" +traitlets = ">=5.1.0,<6.0" [package.extras] test = ["pytest (!=5.3.4)", "pytest-cov", "flaky", "nose", "ipyparallel"] [[package]] name = "ipython" -version = "7.26.0" +version = "7.29.0" description = "IPython: Productive Interactive Computing" category = "main" optional = false @@ -365,7 +380,7 @@ python-versions = "*" [[package]] name = "ipywidgets" -version = "7.6.3" +version = "7.6.5" description = "IPython HTML widgets for Jupyter" category = "main" optional = false @@ -374,6 +389,7 @@ python-versions = "*" [package.dependencies] ipykernel = ">=4.5.1" ipython = {version = ">=4.0.0", markers = "python_version >= \"3.3\""} +ipython-genutils = ">=0.2.0,<0.3.0" jupyterlab-widgets = {version = ">=1.0.0", markers = "python_version >= \"3.6\""} nbformat = ">=4.2.0" traitlets = ">=4.3.1" @@ -384,7 +400,7 @@ test = ["pytest (>=3.6.0)", "pytest-cov", "mock"] [[package]] name = "jax" -version = "0.2.19" +version = "0.2.24" description = "Differentiate, compile, and transform Numpy code." category = "main" optional = false @@ -394,19 +410,20 @@ python-versions = ">=3.7" absl-py = "*" numpy = ">=1.18" opt_einsum = "*" +scipy = ">=1.2.1" +typing_extensions = "*" [package.extras] -cpu = ["jaxlib (==0.1.70)"] -cuda101 = ["jaxlib (==0.1.70+cuda101)"] -cuda102 = ["jaxlib (==0.1.70+cuda102)"] -cuda110 = ["jaxlib (==0.1.70+cuda110)"] -cuda111 = ["jaxlib (==0.1.70+cuda111)"] +cpu = ["jaxlib (==0.1.73)"] +cuda = ["jaxlib (==0.1.73+cuda11.cudnn82)"] +cuda11_cudnn805 = ["jaxlib (==0.1.73+cuda11.cudnn805)"] +cuda11_cudnn82 = ["jaxlib (==0.1.73+cuda11.cudnn82)"] minimum-jaxlib = ["jaxlib (==0.1.69)"] -tpu = ["jaxlib (==0.1.70)", "libtpu-nightly (==0.1.dev20210809)", "requests"] +tpu = ["jaxlib (==0.1.73)", "libtpu-nightly (==0.1.dev20211018)", "requests"] [[package]] name = "jaxlib" -version = "0.1.70" +version = "0.1.73" description = "XLA library for JAX" category = "main" optional = false @@ -435,7 +452,7 @@ testing = ["Django (<3.1)", "colorama", "docopt", "pytest (<6.0.0)"] [[package]] name = "jinja2" -version = "3.0.1" +version = "3.0.2" description = "A very fast and expressive template engine." category = "main" optional = false @@ -449,21 +466,21 @@ i18n = ["Babel (>=2.7)"] [[package]] name = "jsonschema" -version = "3.2.0" +version = "4.2.1" description = "An implementation of JSON Schema validation for Python" category = "main" optional = false -python-versions = "*" +python-versions = ">=3.7" [package.dependencies] attrs = ">=17.4.0" importlib-metadata = {version = "*", markers = "python_version < \"3.8\""} -pyrsistent = ">=0.14.0" -six = ">=1.11.0" +importlib-resources = {version = ">=1.4.0", markers = "python_version < \"3.9\""} +pyrsistent = ">=0.14.0,<0.17.0 || >0.17.0,<0.17.1 || >0.17.1,<0.17.2 || >0.17.2" [package.extras] -format = ["idna", "jsonpointer (>1.13)", "rfc3987", "strict-rfc3339", "webcolors"] -format_nongpl = ["idna", "jsonpointer (>1.13)", "webcolors", "rfc3986-validator (>0.1.0)", "rfc3339-validator"] +format = ["fqdn", "idna", "isoduration", "jsonpointer (>1.13)", "rfc3339-validator", "rfc3987", "uri-template", "webcolors (>=1.11)"] +format_nongpl = ["fqdn", "idna", "isoduration", "jsonpointer (>1.13)", "rfc3339-validator", "rfc3986-validator (>0.1.0)", "uri-template", "webcolors (>=1.11)"] [[package]] name = "jupyter" @@ -483,7 +500,7 @@ qtconsole = "*" [[package]] name = "jupyter-client" -version = "7.0.1" +version = "7.0.6" description = "Jupyter protocol implementation and client libraries" category = "main" optional = false @@ -522,14 +539,14 @@ test = ["pexpect"] [[package]] name = "jupyter-core" -version = "4.7.1" +version = "4.9.1" description = "Jupyter core package. A base package on which Jupyter projects rely." category = "main" optional = false python-versions = ">=3.6" [package.dependencies] -pywin32 = {version = ">=1.0", markers = "sys_platform == \"win32\""} +pywin32 = {version = ">=1.0", markers = "sys_platform == \"win32\" and platform_python_implementation != \"PyPy\""} traitlets = "*" [[package]] @@ -545,7 +562,7 @@ pygments = ">=2.4.1,<3" [[package]] name = "jupyterlab-widgets" -version = "1.0.0" +version = "1.0.2" description = "A JupyterLab extension." category = "main" optional = false @@ -553,9 +570,9 @@ python-versions = ">=3.6" [[package]] name = "jupytext" -version = "1.11.4" +version = "1.13.1" description = "Jupyter notebooks as Markdown documents, Julia, Python or R scripts" -category = "dev" +category = "main" optional = false python-versions = "~=3.6" @@ -572,17 +589,17 @@ toml = ["toml"] [[package]] name = "kiwisolver" -version = "1.3.1" +version = "1.3.2" description = "A fast implementation of the Cassowary constraint solver" category = "main" optional = false -python-versions = ">=3.6" +python-versions = ">=3.7" [[package]] name = "markdown-it-py" version = "1.1.0" description = "Python port of markdown-it. Markdown parsing, done right!" -category = "dev" +category = "main" optional = false python-versions = "~=3.6" @@ -624,7 +641,7 @@ python-dateutil = ">=2.7" [[package]] name = "matplotlib-inline" -version = "0.1.2" +version = "0.1.3" description = "Inline Matplotlib backend for Jupyter" category = "main" optional = false @@ -637,7 +654,7 @@ traitlets = "*" name = "mdit-py-plugins" version = "0.2.8" description = "Collection of plugins for markdown-it-py" -category = "dev" +category = "main" optional = false python-versions = "~=3.6" @@ -659,7 +676,7 @@ python-versions = "*" [[package]] name = "more-itertools" -version = "8.8.0" +version = "8.10.0" description = "More routines for operating on iterables, beyond itertools" category = "dev" optional = false @@ -667,7 +684,7 @@ python-versions = ">=3.5" [[package]] name = "nbclient" -version = "0.5.4" +version = "0.5.5" description = "A client library for executing notebooks. Formerly nbconvert's ExecutePreprocessor." category = "main" optional = false @@ -686,7 +703,7 @@ test = ["codecov", "coverage", "ipython", "ipykernel", "ipywidgets", "pytest (>= [[package]] name = "nbconvert" -version = "6.1.0" +version = "6.2.0" description = "Converting Jupyter Notebooks" category = "main" optional = false @@ -708,11 +725,11 @@ testpath = "*" traitlets = ">=5.0" [package.extras] -all = ["pytest", "pytest-cov", "pytest-dependency", "ipykernel", "ipywidgets (>=7)", "pyppeteer (==0.2.2)", "tornado (>=4.0)", "sphinx (>=1.5.1)", "sphinx-rtd-theme", "nbsphinx (>=0.2.12)", "ipython"] +all = ["pytest", "pytest-cov", "pytest-dependency", "ipykernel", "ipywidgets (>=7)", "pyppeteer (==0.2.6)", "tornado (>=4.0)", "sphinx (>=1.5.1)", "sphinx-rtd-theme", "nbsphinx (>=0.2.12)", "ipython"] docs = ["sphinx (>=1.5.1)", "sphinx-rtd-theme", "nbsphinx (>=0.2.12)", "ipython"] serve = ["tornado (>=4.0)"] -test = ["pytest", "pytest-cov", "pytest-dependency", "ipykernel", "ipywidgets (>=7)", "pyppeteer (==0.2.2)"] -webpdf = ["pyppeteer (==0.2.2)"] +test = ["pytest", "pytest-cov", "pytest-dependency", "ipykernel", "ipywidgets (>=7)", "pyppeteer (==0.2.6)"] +webpdf = ["pyppeteer (==0.2.6)"] [[package]] name = "nbformat" @@ -750,7 +767,7 @@ python-versions = "*" [[package]] name = "notebook" -version = "6.4.3" +version = "6.4.5" description = "A web-based notebook environment for interactive computing" category = "main" optional = false @@ -779,7 +796,7 @@ test = ["pytest", "coverage", "requests", "nbval", "selenium", "pytest-cov", "re [[package]] name = "numpy" -version = "1.21.2" +version = "1.21.4" description = "NumPy is the fundamental package for array computing with Python." category = "main" optional = false @@ -802,18 +819,18 @@ tests = ["pytest", "pytest-cov", "pytest-pep8"] [[package]] name = "packaging" -version = "21.0" +version = "21.2" description = "Core utilities for Python packages" category = "main" optional = false python-versions = ">=3.6" [package.dependencies] -pyparsing = ">=2.0.2" +pyparsing = ">=2.0.2,<3" [[package]] name = "pandocfilters" -version = "1.4.3" +version = "1.5.0" description = "Utilities for writing pandoc filters in python" category = "main" optional = false @@ -852,7 +869,7 @@ python-versions = "*" [[package]] name = "pillow" -version = "8.3.1" +version = "8.4.0" description = "Python Imaging Library (Fork)" category = "main" optional = false @@ -860,7 +877,7 @@ python-versions = ">=3.6" [[package]] name = "platformdirs" -version = "2.2.0" +version = "2.4.0" description = "A small Python module for determining appropriate platform-specific dirs, e.g. a \"user data dir\"." category = "dev" optional = false @@ -886,7 +903,7 @@ dev = ["pre-commit", "tox"] [[package]] name = "pre-commit" -version = "2.14.0" +version = "2.15.0" description = "A framework for managing and maintaining multi-language pre-commit hooks." category = "dev" optional = false @@ -903,7 +920,7 @@ virtualenv = ">=20.0.8" [[package]] name = "prometheus-client" -version = "0.11.0" +version = "0.12.0" description = "Python client for the Prometheus monitoring system." category = "main" optional = false @@ -914,7 +931,7 @@ twisted = ["twisted"] [[package]] name = "prompt-toolkit" -version = "3.0.20" +version = "3.0.22" description = "Library for building powerful interactive command lines in Python" category = "main" optional = false @@ -933,15 +950,15 @@ python-versions = "*" [[package]] name = "py" -version = "1.10.0" +version = "1.11.0" description = "library with cross-python path, ini-parsing, io, code, log facilities" category = "main" optional = false -python-versions = ">=2.7, !=3.0.*, !=3.1.*, !=3.2.*, !=3.3.*" +python-versions = ">=2.7, !=3.0.*, !=3.1.*, !=3.2.*, !=3.3.*, !=3.4.*" [[package]] name = "pycparser" -version = "2.20" +version = "2.21" description = "C parser in Python" category = "main" optional = false @@ -1023,7 +1040,7 @@ six = ">=1.5" [[package]] name = "pytz" -version = "2021.1" +version = "2021.3" description = "World timezone definitions, modern and historical" category = "dev" optional = false @@ -1031,7 +1048,7 @@ python-versions = "*" [[package]] name = "pywin32" -version = "301" +version = "302" description = "Python for Window Extensions" category = "main" optional = false @@ -1039,7 +1056,7 @@ python-versions = "*" [[package]] name = "pywinpty" -version = "1.1.3" +version = "1.1.5" description = "Pseudo terminal support for Windows from Python." category = "main" optional = false @@ -1047,15 +1064,15 @@ python-versions = ">=3.6" [[package]] name = "pyyaml" -version = "5.4.1" +version = "6.0" description = "YAML parser and emitter for Python" -category = "dev" +category = "main" optional = false -python-versions = ">=2.7, !=3.0.*, !=3.1.*, !=3.2.*, !=3.3.*, !=3.4.*, !=3.5.*" +python-versions = ">=3.6" [[package]] name = "pyzmq" -version = "22.2.1" +version = "22.3.0" description = "Python bindings for 0MQ" category = "main" optional = false @@ -1067,7 +1084,7 @@ py = {version = "*", markers = "implementation_name == \"pypy\""} [[package]] name = "qtconsole" -version = "5.1.1" +version = "5.2.0" description = "Jupyter Qt console" category = "main" optional = false @@ -1089,7 +1106,7 @@ test = ["flaky", "pytest", "pytest-qt"] [[package]] name = "qtpy" -version = "1.10.0" +version = "1.11.2" description = "Provides an abstraction layer on top of the various Qt bindings (PyQt5, PyQt4 and PySide) and additional custom QWidgets." category = "main" optional = false @@ -1115,11 +1132,11 @@ use_chardet_on_py3 = ["chardet (>=3.0.2,<5)"] [[package]] name = "scipy" -version = "1.7.1" +version = "1.7.2" description = "SciPy: Scientific Library for Python" category = "main" optional = false -python-versions = ">=3.7,<3.10" +python-versions = ">=3.7,<3.11" [package.dependencies] numpy = ">=1.16.5,<1.23.0" @@ -1272,7 +1289,7 @@ test = ["pytest"] [[package]] name = "terminado" -version = "0.11.1" +version = "0.12.1" description = "Tornado websocket backend for the Xterm.js Javascript terminal emulator library." category = "main" optional = false @@ -1301,7 +1318,7 @@ test = ["pytest", "pathlib2"] name = "toml" version = "0.10.2" description = "Python Library for Tom's Obvious, Minimal Language" -category = "dev" +category = "main" optional = false python-versions = ">=2.6, !=3.0.*, !=3.1.*, !=3.2.*" @@ -1313,23 +1330,36 @@ category = "main" optional = false python-versions = ">= 3.5" +[[package]] +name = "tqdm" +version = "4.62.3" +description = "Fast, Extensible Progress Meter" +category = "main" +optional = false +python-versions = "!=3.0.*,!=3.1.*,!=3.2.*,!=3.3.*,>=2.7" + +[package.dependencies] +colorama = {version = "*", markers = "platform_system == \"Windows\""} + +[package.extras] +dev = ["py-make (>=0.1.0)", "twine", "wheel"] +notebook = ["ipywidgets (>=6)"] +telegram = ["requests"] + [[package]] name = "traitlets" -version = "5.0.5" +version = "5.1.1" description = "Traitlets Python configuration system" category = "main" optional = false python-versions = ">=3.7" -[package.dependencies] -ipython-genutils = "*" - [package.extras] test = ["pytest"] [[package]] name = "typing-extensions" -version = "3.10.0.0" +version = "3.10.0.2" description = "Backported and Experimental Type Hints for Python 3.5+" category = "main" optional = false @@ -1337,7 +1367,7 @@ python-versions = "*" [[package]] name = "urllib3" -version = "1.26.6" +version = "1.26.7" description = "HTTP library with thread-safe connection pooling, file post, and more." category = "dev" optional = false @@ -1350,7 +1380,7 @@ socks = ["PySocks (>=1.5.6,!=1.5.7,<2.0)"] [[package]] name = "virtualenv" -version = "20.7.2" +version = "20.10.0" description = "Virtual Python Environment builder" category = "dev" optional = false @@ -1359,13 +1389,13 @@ python-versions = "!=3.0.*,!=3.1.*,!=3.2.*,!=3.3.*,!=3.4.*,>=2.7" [package.dependencies] "backports.entry-points-selectable" = ">=1.0.4" distlib = ">=0.3.1,<1" -filelock = ">=3.0.0,<4" +filelock = ">=3.2,<4" importlib-metadata = {version = ">=0.12", markers = "python_version < \"3.8\""} platformdirs = ">=2,<3" six = ">=1.9.0,<2" [package.extras] -docs = ["proselint (>=0.10.2)", "sphinx (>=3)", "sphinx-argparse (>=0.2.5)", "sphinx-rtd-theme (>=0.4.3)", "towncrier (>=19.9.0rc1)"] +docs = ["proselint (>=0.10.2)", "sphinx (>=3)", "sphinx-argparse (>=0.2.5)", "sphinx-rtd-theme (>=0.4.3)", "towncrier (>=21.3)"] testing = ["coverage (>=4)", "coverage-enable-subprocess (>=1)", "flaky (>=3)", "pytest (>=4)", "pytest-env (>=0.6.2)", "pytest-freezegun (>=0.4.1)", "pytest-mock (>=2)", "pytest-randomly (>=1)", "pytest-timeout (>=1)", "packaging (>=20.0)"] [[package]] @@ -1386,7 +1416,7 @@ python-versions = "*" [[package]] name = "widgetsnbextension" -version = "3.5.1" +version = "3.5.2" description = "IPython HTML widgets for Jupyter" category = "main" optional = false @@ -1397,7 +1427,7 @@ notebook = ">=4.4.1" [[package]] name = "zipp" -version = "3.5.0" +version = "3.6.0" description = "Backport of 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Kumar ", "Miguel Lazaro-Gredilla ", "Dileep George "] # Additional info license = "MIT" readme = "README.md" @@ -16,17 +16,18 @@ keywords = ["PGMax", "jax"] [tool.poetry.dependencies] python = ">=3.7,<3.8" jupyter = "^1.0.0" -matplotlib = "^3.4.2" +matplotlib = "^3.2.0" jax = "^0.2.14" jaxlib = "^0.1.67" -numpy = "^1.20.3" -scipy = "^1.6.3" +numpy = "^1.19.0" +scipy = "^1.2.3" +jupytext = "^1.11.3" +tqdm = "^4.61.0" [tool.poetry.dev-dependencies] pytest = "^5.2" Sphinx = "^3.0.0" pre-commit = "^2.13.0" -jupytext = "^1.11.3" sphinx-rtd-theme = "^0.5.2" pytest-cov = "^2.12.1" diff --git a/tests/test_pgmax.py b/tests/test_pgmax.py index 4968c8e1..f7fb4ecb 100644 --- a/tests/test_pgmax.py +++ b/tests/test_pgmax.py @@ -30,92 +30,94 @@ def create_valid_suppression_config_arr(suppression_diameter): return ret_arr true_final_msgs_output = jax.device_put( - [ - 0.0000000e00, - -2.9802322e-08, - 0.0000000e00, - 0.0000000e00, - 0.0000000e00, - -6.2903470e-01, - 0.0000000e00, - -3.0177221e-01, - -3.0177209e-01, - -2.8220856e-01, - 0.0000000e00, - -6.0928625e-01, - -1.2259892e-01, - -5.7227510e-01, - 0.0000000e00, - -1.2259889e-01, - 0.0000000e00, - -7.0657951e-01, - 0.0000000e00, - -5.8416575e-01, - -4.4967628e-01, - -1.2259889e-01, - -4.4967628e-01, - 0.0000000e00, - 0.0000000e00, - -5.8398044e-01, - -1.1587733e-01, - -1.8589476e-01, - 0.0000000e00, - -3.0177209e-01, - 0.0000000e00, - -1.1920929e-07, - -2.9802322e-08, - 0.0000000e00, - 0.0000000e00, - -7.2534859e-01, - -2.1119976e-01, - -1.1224430e00, - 0.0000000e00, - -2.9802322e-08, - -2.9802322e-08, - 0.0000000e00, - -1.1587762e-01, - -4.8865837e-01, - 0.0000000e00, - 0.0000000e00, - 0.0000000e00, - -2.9802322e-08, - 0.0000000e00, - -1.7563977e00, - -1.7563977e00, - 0.0000000e00, - -2.0581698e00, - -2.0581698e00, - 0.0000000e00, - -2.1994662e00, - -2.1994662e00, - 0.0000000e00, - -1.6154857e00, - -1.6154857e00, - 0.0000000e00, - -2.0535989e00, - -2.0535989e00, - 0.0000000e00, - -1.7265215e00, - -1.7265215e00, - 0.0000000e00, - -1.7238994e00, - -1.7238994e00, - 0.0000000e00, - -2.0509768e00, - -2.0509768e00, - 0.0000000e00, - -1.8303051e00, - -1.8303051e00, - 0.0000000e00, - -2.7415483e00, - -2.7415483e00, - 0.0000000e00, - -2.0552459e00, - -2.0552459e00, - 0.0000000e00, - -2.1711233e00, - -2.1711233e00, - ] + jnp.array( + [ + 0.0000000e00, + -2.9802322e-08, + 0.0000000e00, + 0.0000000e00, + 0.0000000e00, + -6.2903470e-01, + 0.0000000e00, + -3.0177221e-01, + -3.0177209e-01, + -2.8220856e-01, + 0.0000000e00, + -6.0928625e-01, + -1.2259892e-01, + -5.7227510e-01, + 0.0000000e00, + -1.2259889e-01, + 0.0000000e00, + -7.0657951e-01, + 0.0000000e00, + -5.8416575e-01, + -4.4967628e-01, + -1.2259889e-01, + -4.4967628e-01, + 0.0000000e00, + 0.0000000e00, + -5.8398044e-01, + -1.1587733e-01, + -1.8589476e-01, + 0.0000000e00, + -3.0177209e-01, + 0.0000000e00, + -1.1920929e-07, + -2.9802322e-08, + 0.0000000e00, + 0.0000000e00, + -7.2534859e-01, + -2.1119976e-01, + -1.1224430e00, + 0.0000000e00, + -2.9802322e-08, + -2.9802322e-08, + 0.0000000e00, + -1.1587762e-01, + -4.8865837e-01, + 0.0000000e00, + 0.0000000e00, + 0.0000000e00, + -2.9802322e-08, + 0.0000000e00, + -1.7563977e00, + -1.7563977e00, + 0.0000000e00, + -2.0581698e00, + -2.0581698e00, + 0.0000000e00, + -2.1994662e00, + -2.1994662e00, + 0.0000000e00, + -1.6154857e00, + -1.6154857e00, + 0.0000000e00, + -2.0535989e00, + -2.0535989e00, + 0.0000000e00, + -1.7265215e00, + -1.7265215e00, + 0.0000000e00, + -1.7238994e00, + -1.7238994e00, + 0.0000000e00, + -2.0509768e00, + -2.0509768e00, + 0.0000000e00, + -1.8303051e00, + -1.8303051e00, + 0.0000000e00, + -2.7415483e00, + -2.7415483e00, + 0.0000000e00, + -2.0552459e00, + -2.0552459e00, + 0.0000000e00, + -2.1711233e00, + -2.1711233e00, + ] + ) ) true_map_state_output = { ("grid_vars", 0, 0, 0): 2,