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Currently, the user needs to manually configure parameters for wrapper classes like AnnDataWrapper:
AnnDataWrapper( adata_path=zarr_filepath, obs_embedding_paths=["obsm/X_umap"], obs_embedding_names=["UMAP"], obs_set_paths=["obs/CellType"], obs_set_names=["Cell Type"], obs_feature_matrix_path="X", feature_filter_path="var/top_highly_variable" )
but maybe we could support a static method like
AnnDataWrapper.from_object(adata)
or for SpatialData (depends on #286 )
SpatialDataWrapper.from_object(adata)
The text was updated successfully, but these errors were encountered:
Or this could just be defined in a separate Wrapper class like
AutoAnnDataWrapper(adata)
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Or perhaps the AnnDataWrapper class should do this by default, or with an opt-in parameter like
AnnDataWrapper(adata, auto_init=True)
SpatialData
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Currently, the user needs to manually configure parameters for wrapper classes like AnnDataWrapper:
but maybe we could support a static method like
or for SpatialData (depends on #286 )
The text was updated successfully, but these errors were encountered: