#458 PR version

458_bin2cell/bin2cell.eb

@@ -1,4 +1,3 @@
-# should be compatible with Single-cell-python-bundle/2024.02-foss-2023a
 easyblock = 'PythonBundle'
 
 name = 'bin2cell'
@@ -10,18 +9,6 @@ which can be done on the morphology image and/or a visualisation of the gene exp
 
 toolchain = {'name': 'foss', 'version': '2023a'}
 
-# DEPS:
-    # ok build_backend: flit_core >=3.2,<4
-    # OK "numpy < 2",
-    # OK "scanpy",
-    # OK UPDATE - "stardist",
-    # OK "opencv-python", -> with OpenVC -> bin2cell 0.3.2 requires opencv-python, which is not installed.
-        # OpenCV is ok, but pip check will fail on this -> sed it out -> "import cv2"
-    # OK UPDATE - "fastparquet"
-builddependencies = [
-    ('scikit-build', '0.17.6'),
-    ('CMake', '3.26.3'),
-]
 dependencies = [
     ('Python', '3.11.3'),
     ('SciPy-bundle', '2023.07'),
@@ -35,10 +22,6 @@ exts_list = [
     ('flit_core', '3.9.0', {
         'checksums': ['72ad266176c4a3fcfab5f2930d76896059851240570ce9a98733b658cb786eba'],
     }),
-    # ('opencv-python', '4.8.1.78', {
-    #     'moduename': 'cv2',
-    #     'checksums': ['cc7adbbcd1112877a39274106cb2752e04984bc01a031162952e97450d6117f6'],
-    # }),
     (name, version, {
         # opencv-python is installed via OpenCV, python module name is 'cv2'
         'preinstallopts': "sed -i '/opencv-python/d' pyproject.toml &&",

458_bin2cell/stardist.eb

@@ -11,12 +11,6 @@ toolchain = {'name': 'foss', 'version': '2023a'}
 sources = [SOURCE_TAR_GZ]
 checksums = ['260a31df86ca711e5e98cb91597c6cb9a10dcd1dc3c6b826d41b7c73c9646a1e']
 
-# DEPS:
-    # 'csbdeep>=0.8.0', -> for 0.9.1 -> NO use older version
-    # 'csbdeep>=0.7.4', -> for 0.8.5 seems ok
-    # OK 'scikit-image',
-    # OK 'numba',
-    # OK 'imageio',
 dependencies = [
     ('Python', '3.11.3'),
     ('TensorFlow', '2.13.0'),