From 465d834d3f8804d60dcfa2111f12dbedb792ffae Mon Sep 17 00:00:00 2001 From: Qiang Wang Date: Wed, 21 Jun 2023 20:57:45 +0800 Subject: [PATCH] Misc changes --- templates/ass_collect.tera.sh | 2 +- templates/ass_finish.tera.sh | 2 +- 2 files changed, 2 insertions(+), 2 deletions(-) diff --git a/templates/ass_collect.tera.sh b/templates/ass_collect.tera.sh index a367f57..72ec52f 100644 --- a/templates/ass_collect.tera.sh +++ b/templates/ass_collect.tera.sh @@ -7,7 +7,7 @@ log_warn collect.sh touch check.lst -echo -e "name\t{{ ass_columns | join(sep="\t") }}" \ +echo -e "#name\t{{ ass_columns | join(sep="\t") }}" \ > collect.tsv cat url.tsv | diff --git a/templates/ass_finish.tera.sh b/templates/ass_finish.tera.sh index 8bde329..4f47fe7 100644 --- a/templates/ass_finish.tera.sh +++ b/templates/ass_finish.tera.sh @@ -42,7 +42,7 @@ cat "collect.pass.tsv" | log_info "Representative or reference strains" cat collect.pass.tsv | tsv-filter -H --not-empty "RefSeq_category" | - tsv-select -H -f name | + tsv-select -f 1 | sed '1d' \ > rep.lst