diff --git a/.coveragerc b/.coveragerc index 4b5d00b..c0228fb 100644 --- a/.coveragerc +++ b/.coveragerc @@ -1,2 +1,4 @@ [report] exclude_lines = pass + pragma: no cover + raise NotImplementedError \ No newline at end of file diff --git a/Dockerfile b/Dockerfile index 93f0713..ddb6f86 100644 --- a/Dockerfile +++ b/Dockerfile @@ -12,6 +12,7 @@ RUN poetry config virtualenvs.create false && \ COPY . . EXPOSE 8000 +EXPOSE 9200 COPY entrypoint.sh /entrypoint.sh diff --git a/app/celery.py b/app/celery.py new file mode 100644 index 0000000..5766982 --- /dev/null +++ b/app/celery.py @@ -0,0 +1,38 @@ +import os +from celery import Celery + +from typing import Dict +from app.indexer.indexer_file_manager import IndexerFileManager +from app.downloaders.s3 import S3FileDownloader + +from app.handlers.nexus import NexusRESTClient +from app.text_splitters import TextSplitter, character_text_splitter + + +celery = Celery(__name__) +celery.conf.broker_url = os.environ.get( + "CELERY_BROKER_URL", "redis://localhost:6379" + ) +celery.conf.result_backend = os.environ.get( + "CELERY_RESULT_BACKEND", "redis://localhost:6379" + ) + + +@celery.task(name="index_file") +def index_file_data(content_base: Dict) -> bool: + from app.main import main_app + + file_downloader = S3FileDownloader( + os.environ.get("AWS_STORAGE_ACCESS_KEY"), + os.environ.get("AWS_STORAGE_SECRET_KEY") + ) + text_splitter = TextSplitter(character_text_splitter()) + manager = IndexerFileManager(file_downloader, main_app.content_base_indexer, text_splitter) + index_result: bool = manager.index_file_url(content_base) + NexusRESTClient().index_succedded( + task_succeded=index_result, + nexus_task_uuid=content_base.get("task_uuid"), + file_type=content_base.get("extension_file") + ) + + return index_result diff --git a/app/config.py b/app/config.py index 67b68f5..9f77593 100644 --- a/app/config.py +++ b/app/config.py @@ -1,4 +1,7 @@ import os +from dotenv import load_dotenv + +load_dotenv() class AppConfig: @@ -24,3 +27,17 @@ def __init__(self): "HUGGINGFACE_API_TOKEN", "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" ), } + + self.sagemaker_aws ={ + "endpoint_name": os.environ.get( + "SAGEMAKER_ENDPOINT_NAME", + "huggingface-pytorch-inference-2023-10-25-14-25-59-713", + ), + "region_name": os.environ.get("SAGEMAKER_REGION_NAME", "us-east-1"), + "aws_key": os.environ.get("SAGE_MAKER_AWS_KEY"), + "aws_secret": os.environ.get("SAGE_MAKER_AWS_SECRET"), + } + + self.content_base_index_name = os.environ.get( + "INDEX_CONTENTBASES_NAME", "content_bases" + ) diff --git a/app/downloaders/__init__.py b/app/downloaders/__init__.py new file mode 100644 index 0000000..2e0f087 --- /dev/null +++ b/app/downloaders/__init__.py @@ -0,0 +1,27 @@ +from abc import ABC, abstractmethod +from app.downloaders.exceptions import FileDownloaderException + + +class IFileDownloader(ABC): + @abstractmethod + def authenticate(self): + pass + + @abstractmethod + def download_file(self): + pass + + @abstractmethod + def download_file_batch(self): + pass + + @abstractmethod + def download_file_bulk(self): + pass + +def download_file(file_downloader, file_name: str) -> None: + handler = file_downloader + try: + handler.download_file(file_name) + except Exception as err: + raise FileDownloaderException(err) \ No newline at end of file diff --git a/app/downloaders/exceptions.py b/app/downloaders/exceptions.py new file mode 100644 index 0000000..fdcbc3f --- /dev/null +++ b/app/downloaders/exceptions.py @@ -0,0 +1,2 @@ +class FileDownloaderException(BaseException): + pass \ No newline at end of file diff --git a/app/downloaders/s3/__init__.py b/app/downloaders/s3/__init__.py new file mode 100644 index 0000000..7adb506 --- /dev/null +++ b/app/downloaders/s3/__init__.py @@ -0,0 +1 @@ +from app.downloaders.s3.file_downloader import S3FileDownloader \ No newline at end of file diff --git a/app/downloaders/s3/file_downloader.py b/app/downloaders/s3/file_downloader.py new file mode 100644 index 0000000..8e9f6b9 --- /dev/null +++ b/app/downloaders/s3/file_downloader.py @@ -0,0 +1,46 @@ +import os +import boto3 +from app.downloaders import IFileDownloader +from fastapi.logger import logger +from urllib.parse import urlparse +from typing import Tuple, List + + +class S3FileDownloader(IFileDownloader): + + def __init__(self, + access_key: str, + secret_key: str, + bucket_name: str = os.environ.get("AWS_STORAGE_BUCKET_NAME"), + ) -> None: + self.bucket_name = bucket_name + self.access_key = access_key + self.secret_key = secret_key + self.client = self.authenticate() + + def authenticate(self): + return boto3.client( + "s3", + aws_access_key_id=self.access_key, + aws_secret_access_key=self.secret_key + ) + + def download_file(self, file_name): + bucket = self.bucket_name + key = file_name + local_path = f"app/files/{file_name}" + + self.client.download_file(bucket, key, local_path) + + def download_file_batch(self): + raise NotImplementedError + + def download_file_bulk(self): + raise NotImplementedError + + +def get_s3_bucket_and_file_name(file_url: str)-> Tuple[str, ...]: + result = urlparse(file_url) + bucket_name = result.netloc.split('.s3')[0] + file_name = result.path.strip('/') + return bucket_name, file_name diff --git a/app/embedders/__init__.py b/app/embedders/__init__.py new file mode 100644 index 0000000..e69de29 diff --git a/app/embedders/embedders.py b/app/embedders/embedders.py new file mode 100644 index 0000000..4de451a --- /dev/null +++ b/app/embedders/embedders.py @@ -0,0 +1,79 @@ +from pydantic.v1 import root_validator +import time +from langchain.embeddings import SagemakerEndpointEmbeddings +from typing import Dict, List + + +class SagemakerEndpointEmbeddingsKeys(SagemakerEndpointEmbeddings): + aws_key: str = "" + aws_secret: str = "" + + @root_validator(skip_on_failure=True) + def validate_environment(cls, values: Dict) -> Dict: + import boto3 + + session = boto3.Session( + aws_access_key_id=values["aws_key"], + aws_secret_access_key=values["aws_secret"] + ) + + values["client"] = session.client( + "sagemaker-runtime", region_name=values["region_name"] + ) + + return values + + def embed_documents( + self, texts: List[str], chunk_size: int = 32 + ) -> List[List[float]]: + """Compute doc embeddings using a SageMaker Inference Endpoint. + + Args: + texts: The list of texts to embed. + chunk_size: The chunk size defines how many input texts will + be grouped together as request. If None, will use the + chunk size specified by the class. + + + Returns: + List of embeddings, one for each text. + """ + results = [] + _chunk_size = len(texts) if chunk_size > len(texts) else chunk_size + for i in range(0, len(texts), _chunk_size): + response = self._embedding_func(texts[i:i + _chunk_size]) + results.extend(response) + return results + + def _embedding_func(self, texts: List[str]) -> List[List[float]]: + """Call out to SageMaker Inference embedding endpoint.""" + # replace newlines, which can negatively affect performance. + texts = list(map(lambda x: x.replace("\n", " "), texts)) + _model_kwargs = self.model_kwargs or {} + _endpoint_kwargs = self.endpoint_kwargs or {} + + body = self.content_handler.transform_input(texts, _model_kwargs) + content_type = self.content_handler.content_type + accepts = self.content_handler.accepts + + # send request + while True: + try: + response = self.client.invoke_endpoint( + EndpointName=self.endpoint_name, + Body=body, + ContentType=content_type, + Accept=accepts, + **_endpoint_kwargs, + ) + return self.content_handler.transform_output(response["Body"]) + except Exception as e: + print( + f"Error raised by inference endpoint: {e}\nBody: . Trying again in 5 seconds." + ) + time.sleep(60 * 5) + + raise ValueError( + f"Error raised by inference endpoint: {e}. Trying again in 5 seconds." + ) + return self.content_handler.transform_output(response["Body"]) \ No newline at end of file diff --git a/app/files/__init__.py b/app/files/__init__.py new file mode 100644 index 0000000..e69de29 diff --git a/app/handlers/authorizations.py b/app/handlers/authorizations.py new file mode 100644 index 0000000..b6e5a8c --- /dev/null +++ b/app/handlers/authorizations.py @@ -0,0 +1,8 @@ +import os +from fastapi import HTTPException + + +def token_verification(token: str): + if os.environ.get("SENTENX_TOKEN") == token: + return + raise HTTPException(status_code=401, detail=[{"msg": str("Unauthorized")}]) diff --git a/app/handlers/content_bases.py b/app/handlers/content_bases.py new file mode 100644 index 0000000..f9f021c --- /dev/null +++ b/app/handlers/content_bases.py @@ -0,0 +1,95 @@ +from fastapi import APIRouter, Header +from pydantic import BaseModel + +from app.handlers import IDocumentHandler +from app.indexer import IDocumentIndexer + +from app.celery import index_file_data +from typing import List +from typing import Annotated +from app.handlers.authorizations import token_verification + + +class ContentBaseIndexRequest(BaseModel): + file: str + filename: str + file_uuid: str + extension_file: str + task_uuid: str + content_base: str + + +class ContentBaseIndexResponse(BaseModel): + file: str + filename: str + task_uuid: str + + +class ContentBaseSearchRequest(BaseModel): + search: str + filter: dict[str, str] = None + threshold: float = 1.5 + + +class ContentBaseSearchResponse(BaseModel): + response: List[str] + + +class ContentBaseDeleteRequest(BaseModel): + filename: str + content_base: str + file_uuid: str + + +class ContentBaseDeleteResponse(BaseModel): + deleted: bool + + +class ContentBaseHandler(IDocumentHandler): + def __init__(self, content_base_indexer: IDocumentIndexer): + self.content_base_indexer = content_base_indexer + self.router = APIRouter() + self.router.add_api_route( + "/content_base/index", endpoint=self.index, methods=["PUT"] + ) + self.router.add_api_route( + "/content_base/search", endpoint=self.search, methods=["POST"] + ) + self.router.add_api_route( + "/content_base/delete", endpoint=self.delete, methods=["DELETE"] + ) + + def index(self, request: ContentBaseIndexRequest, Authorization: Annotated[str | None, Header()] = None): + token_verification(Authorization) + content_base = request.__dict__ + task = index_file_data.delay(content_base) + + return ContentBaseIndexResponse( + file=request.file, + filename=request.filename, + task_uuid=task.id, + ) + + def batch_index(self): + raise NotImplementedError + + def delete(self, request: ContentBaseDeleteRequest, Authorization: Annotated[str | None, Header()] = None): + token_verification(Authorization) + self.content_base_indexer.delete( + request.content_base, + request.filename, + request.file_uuid, + ) + return ContentBaseDeleteResponse(deleted=True) + + def delete_batch(self): + raise NotImplementedError + + def search(self, request: ContentBaseSearchRequest, Authorization: Annotated[str | None, Header()] = None): + token_verification(Authorization) + response = self.content_base_indexer.search( + search=request.search.lower(), + threshold=request.threshold, + filter=request.filter + ) + return ContentBaseSearchResponse(response=response) diff --git a/app/handlers/nexus.py b/app/handlers/nexus.py new file mode 100644 index 0000000..1ea94d8 --- /dev/null +++ b/app/handlers/nexus.py @@ -0,0 +1,25 @@ + +import os +import json +import requests + + +class NexusRESTClient: + token = os.environ.get("NEXUS_AI_TOKEN") + base_url = os.environ.get("NEXUS_AI_URL") + + def __init__(self) -> None: + self.headers = { + 'Authorization': self.token, + 'Content-Type': "application/json" + } + + def index_succedded(self, task_succeded: bool, nexus_task_uuid: str, file_type: str) -> None: + endpoint = f'{self.base_url}/api/v1/content-base-file' + data = { + "status": int(task_succeded), + "task_uuid": nexus_task_uuid, + "file_type": "text" if file_type == "txt" else "file", + } + response = requests.patch(url=endpoint, data=json.dumps(data), headers=self.headers) + response.raise_for_status() diff --git a/app/indexer/content_bases.py b/app/indexer/content_bases.py new file mode 100644 index 0000000..c14f7bf --- /dev/null +++ b/app/indexer/content_bases.py @@ -0,0 +1,80 @@ +from langchain.docstore.document import Document + +from app.handlers.products import Product +from app.indexer import IDocumentIndexer +from app.store import IStorage +from typing import List +from uuid import UUID + + +class ContentBaseIndexer(IDocumentIndexer): + def __init__(self, storage: IStorage): + self.storage = storage + + def index_documents(self, docs: List[Document]): + file_uuid = docs[0].metadata["file_uuid"] + content_base_uuid = docs[0].metadata["content_base_uuid"] + + results = self._search_docs_by_content_base_uuid( + content_base_uuid=content_base_uuid, + file_uuid=file_uuid, + ) + ids = [] + if len(results) > 0: + ids = [item["_id"] for item in results] + self.storage.delete(ids=ids) + + return self.storage.save(docs) + + def index(self, texts: List, metadatas: dict): + results = self._search_docs_by_content_base_uuid( + content_base_uuid=metadatas.get('content_base_uuid') + ) + ids = [] + if len(results) > 0: + ids = [item["_id"] for item in results] + self.storage.delete(ids=ids) + + docs = [ + Document(page_content=text.lower(), metadata=metadatas) + for text in texts + ] + + return self.storage.save(docs) + + def index_batch(self): + raise NotImplementedError + + def search(self, search, filter=None, threshold=0.1) -> list[Product]: + matched_responses = self.storage.search(search, filter, threshold) + return set([doc.metadata.get("full_page") for doc in matched_responses]) + + def _search_docs_by_content_base_uuid(self, content_base_uuid: UUID, file_uuid: str = None): + search_filter = { + "metadata.content_base_uuid": content_base_uuid + } + if file_uuid: + search_filter.update({"metadata.file_uuid": file_uuid}) + return self.storage.query_search(search_filter) + + def delete(self, content_base_uuid: UUID, filename: str, file_uuid: str): + search_filter = { + "metadata.content_base_uuid": content_base_uuid, + "metadata.file_uuid": file_uuid, + } + + if filename: + search_filter.update({"metadata.source": filename}) + + scroll_id, results = self.storage.search_delete(search_filter) + ids = [] + + while len(results) > 0: + ids += [item["_id"] for item in results] + scroll_id, results = self.storage.search_delete(search_filter, scroll_id) + + if ids: + self.storage.delete(ids=ids) + + def delete_batch(self): + raise NotImplementedError diff --git a/app/indexer/indexer_file_manager.py b/app/indexer/indexer_file_manager.py new file mode 100644 index 0000000..c5f093c --- /dev/null +++ b/app/indexer/indexer_file_manager.py @@ -0,0 +1,91 @@ +from app.loaders import load_file_and_get_raw_text, load_file_url_and_get_raw_text, load_file_url_and_get_pages_text, load_file_url_and_split_text +from app.text_splitters import get_split_text +from typing import Dict, List +from fastapi.logger import logger +from langchain.schema.document import Document +from app.indexer import IDocumentIndexer +from app.downloaders import IFileDownloader +from app.text_splitters import ITextSplitter + + +def get_file_metadata(content_base: Dict) -> Dict[str, str]: + return { + 'source': content_base.get("filename"), + "content_base_uuid": str(content_base.get('content_base')) + } + +def add_file_metadata(document_pages: List[Document], content_base: Dict) -> List[Document]: + metadata = { + "content_base_uuid": str(content_base.get('content_base')), + "filename": content_base.get("filename"), + "file_uuid": content_base.get("file_uuid") + + } + for page in document_pages: + page.metadata.update(metadata) + + return document_pages + +class IndexerFileManager: + + """Business rule to index a file""" + + def __init__(self, + file_downloader: IFileDownloader, + content_base_indexer: IDocumentIndexer, + text_splitter: ITextSplitter + ) -> None: + self.file_downloader = file_downloader + self.content_base_indexer = content_base_indexer + self.text_splitter = text_splitter + + def index_file_url(self, content_base) -> bool: + docs: List[Document] = load_file_url_and_split_text( + content_base.get("file"), + content_base.get('extension_file'), + self.text_splitter + ) + document_pages: List[Document] = add_file_metadata(docs, content_base) + try: + self.content_base_indexer.index_documents(document_pages) + return True + except Exception as e: # TODO: handle exceptions + logger.exception(e) + return False + + + def index_file_url_raw_text(self, content_base): + file_raw_text: str = load_file_url_and_get_raw_text( + content_base.get("file"), content_base.get('extension_file') + ) + metadatas: Dict[str, str] = get_file_metadata(content_base) + texts: List[str] = get_split_text(file_raw_text) + + try: + self.content_base_indexer.index(texts, metadatas) + return True + except Exception as e: # TODO: handle exceptions + logger.exception(e) + return False + + def index_file(self, content_base): + filename: str = content_base.get("filename") + + try: + self.file_downloader.download_file(filename) + except Exception as err: + logger.exception(err) + return False + + file_raw_text: str = load_file_and_get_raw_text( + filename, content_base.get('extension_file') + ) + metadatas: Dict[str, str] = get_file_metadata(content_base) + texts: List[str] = get_split_text(file_raw_text) + + try: + self.content_base_indexer.index(texts, metadatas) + return True + except Exception as e: # TODO: handle exceptions + logger.exception(e) + return False diff --git a/app/loaders/__init__.py b/app/loaders/__init__.py new file mode 100644 index 0000000..a119461 --- /dev/null +++ b/app/loaders/__init__.py @@ -0,0 +1,48 @@ + +import os +from app.loaders.loaders import (DataLoader, txt_loader, pdf_loader, docx_loader, xlsx_loader, DataLoaderCls, PDFLoader, DocxLoader, TxtLoader, XlsxLoader) +from langchain.schema.document import Document +from typing import List +from app.text_splitters import ITextSplitter +supported_loaders = { + 'txt': txt_loader, + 'pdf': pdf_loader, + 'doc': docx_loader, + 'docx': docx_loader, + 'xls': xlsx_loader, + 'xlsx': xlsx_loader, +} + +supported_loaders_cls = { + 'pdf': PDFLoader, + 'doc': DocxLoader, + 'docx': DocxLoader, + 'txt': TxtLoader, + 'xlsx': XlsxLoader, + 'xls': XlsxLoader, +} + + +def load_file_and_get_raw_text(file_name: str, file_type: str) -> str: + file_path = f'{os.environ.get("FILE_PATH")}/{file_name}' + loader = supported_loaders.get(file_type) + data_loader = DataLoader(loader, file_path) + return data_loader.raw_text() + + +def load_file_url_and_get_raw_text(file_url: str, file_type: str) -> str: + loader = supported_loaders.get(file_type) + data_loader = DataLoader(loader, file_url) + return data_loader.raw_text() + + +def load_file_url_and_get_pages_text(file_url: str, file_type: str) -> List[Document]: + loader = supported_loaders.get(file_type) + data_loader = DataLoader(loader, file_url) + return data_loader.load() + + +def load_file_url_and_split_text(file_url: str, file_type: str, text_splitter: ITextSplitter) -> List[Document]: + loader = supported_loaders_cls.get(file_type) + data_loader = DataLoaderCls(loader, file_url) + return data_loader.load_and_split_text(text_splitter) \ No newline at end of file diff --git a/app/loaders/loaders.py b/app/loaders/loaders.py index bc53ad8..bffe77a 100644 --- a/app/loaders/loaders.py +++ b/app/loaders/loaders.py @@ -1,9 +1,37 @@ +import os +import uuid +import requests +from abc import ABC, abstractmethod + from langchain.document_loaders import ( TextLoader, PyPDFLoader, UnstructuredExcelLoader, UnstructuredWordDocumentLoader, Docx2txtLoader ) -from typing import Callable, List from langchain.schema.document import Document +from typing import Callable, List +from app.text_splitters import ITextSplitter + + +class DocumentLoader(ABC): + + @abstractmethod + def load(self): + pass + + +class DataLoaderCls: + def __init__(self, loader: DocumentLoader, file: str) -> None: + self.loader = loader(file) + self.file = file + + def load(self) -> List[Document]: + return self.loader.load() + + def load_and_split_text(self, text_splitter: ITextSplitter) -> List[Document]: + return self.loader.load_and_split_text(text_splitter) + + def raw_text(self) -> str: + return self.loader.raw_text() class DataLoader: @@ -28,6 +56,71 @@ def txt_loader(file: str) -> Callable: loader = TextLoader(file) return loader.load() +class TxtLoader(DocumentLoader): + def _get_file(self, file: str): + if os.environ.get("AWS_STORAGE_BUCKET_NAME") in file: + response = requests.get(file) + if response.status_code == 200: + file_path = f"/tmp/{uuid.uuid4()}.txt" + text = response.text + with open(file_path, "w") as file: + file.write(text) + return file_path + return file + + def __init__(self, file:str) -> None: + self.file = self._get_file(file) + self.loader = TextLoader(self.file) + + def load(self) -> List[Document]: + return self.loader.load_and_split() + + def load_and_split_text(self, text_splitter: ITextSplitter) -> List[Document]: + pages = self.load() + split_pages = [] + for page in pages: + page_content = page.page_content.lower() + metadatas = page.metadata + metadatas.update({"full_page": page_content}) + + text_chunks = text_splitter.split_text(page_content) + for chunk in text_chunks: + split_pages.append(Document(page_content=chunk, metadata=metadatas)) + return split_pages + + +class PDFLoader(DocumentLoader): + def __init__(self, file: str) -> None: + self.loader = PyPDFLoader(file) + + def load(self) -> List[Document]: + pages = self.loader.load_and_split() + return pages + + def load_and_split_text(self, text_splitter: ITextSplitter) -> List[Document]: + pages = self.load() + split_pages = [] + + for page in pages: + page_content = page.page_content.lower() + metadatas = page.metadata + metadatas.update({"full_page": page_content}) + + text_chunks = text_splitter.split_text(page_content) + for chunk in text_chunks: + split_pages.append(Document(page_content=chunk, metadata=metadatas)) + + return split_pages + + def raw_text(self) -> str: + pages = self.load() + raw_text = "" + for i, page in enumerate(pages): + text = page.page_content + if text: + raw_text += text.lower() + return raw_text + def pdf_loader(file: str) -> Callable: loader = PyPDFLoader(file) @@ -35,6 +128,27 @@ def pdf_loader(file: str) -> Callable: return pages +class DocxLoader(DocumentLoader): + def __init__(self, file:str) -> None: + self.loader = Docx2txtLoader(file) + + def load(self) -> List[Document]: + return self.loader.load_and_split() + + def load_and_split_text(self, text_splitter: ITextSplitter) -> List[Document]: + pages = self.load() + split_pages = [] + for page in pages: + page_content = page.page_content.lower() + metadatas = page.metadata + metadatas.update({"full_page": page_content}) + + text_chunks = text_splitter.split_text(page_content) + for chunk in text_chunks: + split_pages.append(Document(page_content=chunk, metadata=metadatas)) + return split_pages + + def docx_loader(file: str) -> Callable: loader = Docx2txtLoader(file) return loader.load() @@ -50,3 +164,33 @@ def xlsx_loader(file: str) -> Callable: """Loads .xlsx and .xls files""" loader = UnstructuredExcelLoader(file, mode="elements") return loader.load() + +from urllib.request import urlretrieve +from urllib.parse import urlparse +class XlsxLoader(DocumentLoader): + def __init__(self, file:str) -> None: + tmp_file, _ = self._get_temp_file(file) + self.loader = UnstructuredExcelLoader(tmp_file, mode="single") + + def _get_temp_file(self, file_url: str): + result = urlparse(file_url) + filename = result.path.strip("/") + file_path, message = urlretrieve(file_url, f"/tmp/{filename}") + return file_path, message + + + def load(self) -> List[Document]: + return self.loader.load_and_split() + + def load_and_split_text(self, text_splitter: ITextSplitter) -> List[Document]: + pages = self.load() + split_pages = [] + for page in pages: + page_content = page.page_content.lower() + metadatas = page.metadata + metadatas.update({"full_page": page_content}) + + text_chunks = text_splitter.split_text(page_content) + for chunk in text_chunks: + split_pages.append(Document(page_content=chunk, metadata=metadatas)) + return split_pages diff --git a/app/main.py b/app/main.py index 5558f05..23cc841 100644 --- a/app/main.py +++ b/app/main.py @@ -7,11 +7,16 @@ from app.handlers.products import ProductsHandler from app.indexer import IDocumentIndexer from app.indexer.products import ProductsIndexer -from app.store.elasticsearch_vector_store import ElasticsearchVectorStoreIndex +from app.store.elasticsearch_vector_store import ElasticsearchVectorStoreIndex, ContentBaseElasticsearchVectorStoreIndex from app.config import AppConfig from app.util import ContentHandler +from app.handlers.content_bases import ContentBaseHandler +from app.indexer.content_bases import ContentBaseIndexer +from app.embedders.embedders import SagemakerEndpointEmbeddingsKeys + + class App: api: FastAPI config: AppConfig @@ -49,6 +54,23 @@ def __init__(self, config: AppConfig): self.products_handler = ProductsHandler(self.products_indexer) self.api.include_router(self.products_handler.router) + content_base_content_handler = ContentHandler() + self.content_base_embeddings = SagemakerEndpointEmbeddingsKeys( + aws_key=config.sagemaker_aws["aws_key"], + aws_secret=config.sagemaker_aws["aws_secret"], + endpoint_name=config.sagemaker_aws["endpoint_name"], + region_name=config.sagemaker_aws["region_name"], + content_handler=content_base_content_handler, + ) + self.content_base_vectorstore = ElasticVectorSearch( + elasticsearch_url=config.es_url, + index_name=config.content_base_index_name, + embedding=self.content_base_embeddings, + ) + self.custom_elasticStore = ContentBaseElasticsearchVectorStoreIndex(self.content_base_vectorstore) + self.content_base_indexer = ContentBaseIndexer(self.custom_elasticStore) + self.content_base_handler = ContentBaseHandler(self.content_base_indexer) + self.api.include_router(self.content_base_handler.router) config = AppConfig() main_app = App(config) diff --git a/app/store/elasticsearch_vector_store.py b/app/store/elasticsearch_vector_store.py index c237613..95124f9 100644 --- a/app/store/elasticsearch_vector_store.py +++ b/app/store/elasticsearch_vector_store.py @@ -1,9 +1,10 @@ +import os + from langchain.vectorstores import VectorStore from langchain.docstore.document import Document from app.store import IStorage - - +from fastapi.logger import logger class ElasticsearchVectorStoreIndex(IStorage): def __init__(self, vectorstore: VectorStore, score=1.55): self.vectorstore = vectorstore @@ -50,3 +51,80 @@ def query_search(self, search_filter: dict) -> list[dict]: def delete(self, ids: list[str] = []) -> bool: return self.vectorstore.delete(ids) + + +class ContentBaseElasticsearchVectorStoreIndex(ElasticsearchVectorStoreIndex): + + def save(self, docs: list[Document])-> list[str]: + index = os.environ.get("INDEX_CONTENTBASES_NAME", "content_bases") + res = self.vectorstore.from_documents(docs, self.vectorstore.embeddings, index_name=index) + return res + + def query_search(self, search_filter: dict) -> list[dict]: + match_field: str = list(search_filter.keys())[0] + match_value: str = search_filter[match_field] + + query_script = { + "bool": { + "must": [{"match": {match_field: match_value}}], + } + } + try: + self.vectorstore.client.indices.get(index=self.vectorstore.index_name) + except Exception as e: + return [] + + source = ["metadata"] + response = self.vectorstore.client.search( + index=self.vectorstore.index_name, query=query_script, source=source + ) + hits = [hit for hit in response["hits"]["hits"]] + return hits + + def search_delete(self, search_filter: dict, scroll_id: str = None) -> tuple[str, dict]: + + if scroll_id: + response = self.vectorstore.client.scroll(scroll_id=scroll_id, scroll='2m') + scroll_id = response["_scroll_id"] + hits = [hit for hit in response["hits"]["hits"]] + return scroll_id, hits + + match_field1: str = list(search_filter.keys())[0] + match_value1: str = search_filter[match_field1] + match_field2 = list(search_filter.keys())[1] + match_value2 = search_filter[match_field2] + + query_script = { + "bool": { + "must": [ + {"match": {match_field1: match_value1}}, + {"match": {match_field2: match_value2}} + ], + } + } + + try: + self.vectorstore.client.indices.get(index=self.vectorstore.index_name) + except Exception as e: + return [] + + source = ["metadata"] + + + response = self.vectorstore.client.search( + index=self.vectorstore.index_name, + query=query_script, + source=source, + scroll="2m", + size=100, + ) + scroll_id = response["_scroll_id"] + hits = [hit for hit in response["hits"]["hits"]] + return scroll_id, hits + + def search(self, search: str, filter=None, threshold=0.1) -> list[Document]: + docs = self.vectorstore.similarity_search_with_score(query=search, k=5, filter=filter) + return [doc[0] for doc in docs if doc[1] > threshold] + + def delete(self, ids: list[str] = []) -> bool: + return self.vectorstore.delete(ids) diff --git a/app/tests/test_document_loader.py b/app/tests/test_document_loader.py index 440da47..bc6a96d 100644 --- a/app/tests/test_document_loader.py +++ b/app/tests/test_document_loader.py @@ -1,25 +1,43 @@ import unittest from app.loaders.loaders import ( DataLoader, + DataLoaderCls, + PDFLoader, + DocxLoader, + TxtLoader, pdf_loader, txt_loader, docx_loader, u_docx_loader, xlsx_loader ) +from unittest import mock +from app.loaders import ( + load_file_url_and_split_text, + load_file_url_and_get_pages_text, + load_file_and_get_raw_text, + load_file_url_and_get_raw_text +) import os import pathlib import shutil import xlsxwriter from docx import Document from reportlab.pdfgen.canvas import Canvas +from app.text_splitters import TextSplitter, character_text_splitter +from typing import List + + +TEST_DIR = pathlib.Path(__file__).parent.resolve() +TEST_FILE_PATH = os.path.join(TEST_DIR, 'test_files') class TestDocumentLoader(unittest.TestCase): - test_dir = pathlib.Path(__file__).parent.resolve() - path = os.path.join(test_dir, 'test_files') + test_dir = TEST_DIR + path = TEST_FILE_PATH text_string = 'Hello, World!' file_name = 'test_file' + text_splitter = TextSplitter(character_text_splitter()) @staticmethod def _create_test_dir(): @@ -104,6 +122,67 @@ def test_load_xlsx(self): raw_text = data_loader.raw_text() self.assertEqual(type(raw_text), str) + def test_pdf_loader_cls(self): + file_path = f'{self.path}/{self.file_name}.pdf' + pdf_loader = PDFLoader(file_path) + split_pages: List[Document] = pdf_loader.load_and_split_text(self.text_splitter) + self.assertEqual(list, type(split_pages)) + + def test_docx_loader_cls(self): + file_path = f'{self.path}/{self.file_name}.docx' + docx_loader = DocxLoader(file_path) + split_pages: List[Document] = docx_loader.load_and_split_text(self.text_splitter) + self.assertEqual(list, type(split_pages)) + + def test_txt_loader_cls(self): + file_path = f'{self.path}/{self.file_name}.txt' + docx_loader = TxtLoader(file_path) + split_pages: List[Document] = docx_loader.load_and_split_text(self.text_splitter) + self.assertEqual(list, type(split_pages)) + + def test_load_file_url_and_split_text(self): + file_path = f'{self.path}/{self.file_name}.pdf' + file_type = "pdf" + docs = load_file_url_and_split_text(file_path, file_type, self.text_splitter) + self.assertEqual(list, type(docs)) + + def test_load_file_url_and_get_pages_text(self): # this function is deprecated + file_path = f'{self.path}/{self.file_name}.pdf' + file_type = "pdf" + docs = load_file_url_and_get_pages_text(file_path ,file_type) + self.assertEqual(list, type(docs)) + + @mock.patch.dict(os.environ, {"FILE_PATH": TEST_FILE_PATH}) + def test_load_file_and_get_raw_text(self): # this function is deprecated + file_type = "pdf" + raw_text = load_file_and_get_raw_text(f"{self.file_name}.{file_type}" ,file_type) + self.assertEqual(str, type(raw_text)) + + def test_file_url_and_get_raw_text(self): # this function is deprecated + file_path = f'{self.path}/{self.file_name}.pdf' + file_type = "pdf" + raw_text = load_file_url_and_get_raw_text(file_path ,file_type) + self.assertEqual(str, type(raw_text)) + + def test_pdf_loader_cls_raw_text(self): + file_path = f'{self.path}/{self.file_name}.pdf' + pdf_loader = PDFLoader(file_path) + raw_text = pdf_loader.raw_text() + self.assertEqual(str, type(raw_text)) + + def test_data_loader_cls(self): + file_path = f'{self.path}/{self.file_name}.pdf' + data_loader = DataLoaderCls(PDFLoader, file_path) + loaded_data: List[Document] = data_loader.load() + self.assertEqual(list, type(loaded_data)) + + def test_data_loader_raw_text(self): + file_path = f'{self.path}/{self.file_name}.pdf' + data_loader = DataLoaderCls(PDFLoader, file_path) + loaded_data: str = data_loader.raw_text() + self.assertEqual(str, type(loaded_data)) + + @classmethod def tearDownClass(cls): if os.path.exists(TestDocumentLoader.path): diff --git a/app/tests/test_elasticsearch_vector_store.py b/app/tests/test_elasticsearch_vector_store.py index da9f9ce..3efb301 100644 --- a/app/tests/test_elasticsearch_vector_store.py +++ b/app/tests/test_elasticsearch_vector_store.py @@ -2,7 +2,7 @@ from langchain.vectorstores import ElasticVectorSearch from langchain.docstore.document import Document -from app.store.elasticsearch_vector_store import ElasticsearchVectorStoreIndex +from app.store.elasticsearch_vector_store import ElasticsearchVectorStoreIndex, ContentBaseElasticsearchVectorStoreIndex from unittest.mock import Mock @@ -84,3 +84,114 @@ def test_query_search_with_exception(self): {"doc_generic_id": "123", "metadata.sku": ["SKU-123"]} ) self.assertEqual(result, []) + + +class ContentBaseElasticsearchVectorStoreIndexTest(unittest.TestCase): + def setUp(self): + self.vectorstore = Mock(spec=ElasticVectorSearch) + self.vectorstore.index_name = "index_test" + self.vectorstore.client = Mock() + self.vectorstore.embeddings = Mock() + self.vectorstore.client.indices = Mock() + self.storage = ContentBaseElasticsearchVectorStoreIndex(self.vectorstore) + self.doc = Document(page_content="test doc", metadata={"full_page": "test document index", "content_base_uuid": "dfff32e7-dce6-40f7-a86e-8f9618887977"}) + def test_save(self): + self.vectorstore.from_documents.return_value = [ + "f40a4707-549e-4847-8f48-19b1987b8149" + ] + doc = Document(page_content="test doc", metadata={ + "full_page": "test document index", + "content_base_uuid": "dfff32e7-dce6-40f7-a86e-8f9618887977"} + ) + result = self.storage.save(doc) + self.vectorstore.from_documents( + [self.doc], self.vectorstore.embeddings, self.vectorstore.index_name + ) + self.assertEqual(result, ["f40a4707-549e-4847-8f48-19b1987b8149"]) + + def test_delete(self): + self.vectorstore.delete.return_value = True + result = self.storage.delete(ids=["dfff32e7-dce6-40f7-a86e-8f9618887977"]) + self.assertEqual(True, result) + + def test_search(self): + self.vectorstore.similarity_search_with_score.return_value = [ + ( + self.doc, + 1.5, + ) + ] + query_filter = {"content_base_uuid": "dfff32e7-dce6-40f7-a86e-8f9618887977"} + results = self.storage.search( + search="test", filter=query_filter + ) + self.vectorstore.similarity_search_with_score.assert_called_once_with( + query="test", k=5, filter=query_filter + ) + self.assertEqual(1, len(results)) + self.assertEqual(results[0].page_content, "test doc") + + def test_query_search(self): + self.vectorstore.client.indices.get.return_value = True + mock_search_hits = [{"_id": "53899082-cf01-41d1-ba9b-320a90670755"}] + self.vectorstore.client.search.return_value = { + "hits": {"hits": mock_search_hits} + } + result = self.storage.query_search( + {"metadata.content_base_uuid": "dfff32e7-dce6-40f7-a86e-8f9618887977"} + ) + self.assertEqual(result, mock_search_hits) + + def test_query_search_with_exception(self): + query_filter = {"content_base_uuid": "dfff32e7-dce6-40f7-a86e-8f9618887977"} + + self.vectorstore.client.indices.get.side_effect = RuntimeError( + "Index Not Found" + ) + result = self.storage.query_search( + query_filter + ) + self.assertEqual(result, []) + + def test_search_delete(self): + search_filter = { + "metadata.content_base_uuid": "dfff32e7-dce6-40f7-a86e-8f9618887977", + "metadata.filename": "filename.pdf" + } + self.vectorstore.client.indices.get.return_value = True + self.vectorstore.client.search.return_value = { + "_scroll_id": "dfff32e7", + "hits": { + "hits": [{"_id": "53899082-cf01-41d1-ba9b-320a90670755"}] + } + } + result = self.storage.search_delete(search_filter) + mock_search_tuple = ('dfff32e7', [{'_id': '53899082-cf01-41d1-ba9b-320a90670755'}]) + self.assertEqual(result, mock_search_tuple) + + def test_search_delete_scroll_id(self): + search_filter = { + "metadata.content_base_uuid": "dfff32e7-dce6-40f7-a86e-8f9618887977", + "metadata.filename": "filename.pdf" + } + self.vectorstore.client.indices.get.return_value = True + self.vectorstore.client.scroll.return_value = { + "_scroll_id": "53899082", + "hits": { + "hits": [{"_id": "43899082-cf01-81d1-ba9b-329a90670755"}] + } + } + result = self.storage.search_delete(search_filter, "dfff32e7") + mock_search_tuple = ('53899082', [{'_id': '43899082-cf01-81d1-ba9b-329a90670755'}]) + self.assertEqual(result, mock_search_tuple) + + def test_search_delete_with_exception(self): + search_filter = { + "metadata.content_base_uuid": "dfff32e7-dce6-40f7-a86e-8f9618887977", + "metadata.filename": "filename.pdf" + } + self.vectorstore.client.indices.get.side_effect = RuntimeError( + "Index Not Found" + ) + result = self.storage.search_delete(search_filter) + self.assertEqual(result, []) \ No newline at end of file diff --git a/app/tests/test_text_splitter.py b/app/tests/test_text_splitter.py index dfd9a8f..412545c 100644 --- a/app/tests/test_text_splitter.py +++ b/app/tests/test_text_splitter.py @@ -1,16 +1,39 @@ import unittest from app.text_splitters.text_splitters import ( - TextSplitter, character_text_splitter + TextSplitter, character_text_splitter, get_split_text ) from lorem_text import lorem +from typing import Callable, List, Dict +from langchain.schema.document import Document class TestProductsHandler(unittest.TestCase): def setUp(self): self.text = lorem.paragraphs(5) - def test_character_text_splitter(self): - splitter = TextSplitter(character_text_splitter, self.text) - chunks = splitter.split_text() + def test_character_text_splitter_split_text(self): + chunk_size=75 + splitter = TextSplitter(character_text_splitter(chunk_size=chunk_size)) + chunks = splitter.split_text(self.text) self.assertEqual(type(chunks), list) - self.assertGreaterEqual(len(chunks), len(chunks)) + [self.assertGreaterEqual(len(chunk), chunk_size) for chunk in chunks] + + def test_character_text_splitter_create_documents(self): + chunk_size=75 + metadatas = [{"text_size": len(self.text)}] + text_list = [self.text] + splitter = TextSplitter(character_text_splitter(chunk_size=chunk_size)) + docs = splitter.create_documents(text_list, metadatas) + self.assertIs(list, type(docs)) + self.assertIs(Document, type(docs[0])) + + def test_character_text_splitter_split_documents(self): + chunk_size=75 + splitter = TextSplitter(character_text_splitter(chunk_size=chunk_size)) + doc = Document(page_content=self.text, metadata={"text_size": len(self.text)}) + docs = splitter.split_documents([doc]) + self.assertIs(list, type(docs)) + + def test_get_split_text(self): + texts: List[str] = get_split_text(self.text) + self.assertIs(list, type(texts)) diff --git a/app/text_splitters/__init__.py b/app/text_splitters/__init__.py index e69de29..f3993a3 100644 --- a/app/text_splitters/__init__.py +++ b/app/text_splitters/__init__.py @@ -0,0 +1 @@ +from app.text_splitters.text_splitters import get_split_text, ITextSplitter, TextSplitter, character_text_splitter diff --git a/app/text_splitters/text_splitters.py b/app/text_splitters/text_splitters.py index d07c6f5..94d78ec 100644 --- a/app/text_splitters/text_splitters.py +++ b/app/text_splitters/text_splitters.py @@ -1,24 +1,43 @@ -from typing import Callable, List +import os +from abc import ABC, abstractmethod + +from typing import Callable, List, Dict +from langchain.schema.document import Document from langchain.text_splitter import CharacterTextSplitter from app.util import count_words -import os DEFAULT_CHUNK_SIZE = os.environ.get("DEFAULT_CHUNK_SIZE", 75) DEFAULT_CHUNK_OVERLAP = os.environ.get("DEFAULT_CHUNK_OVERLAP", 75) DEFAULT_SEPARATOR = os.environ.get("DEFAULT_SEPARATOR", "\n") -class TextSplitter: - def __init__(self, splitter: Callable, content: str) -> None: - self.splitter = splitter - self.content = content +class ITextSplitter(ABC): #pragma: no cover + + @abstractmethod + def split_text(self): + raise NotImplementedError + + @abstractmethod + def create_documents(self): + raise NotImplementedError - def split_text(self) -> Callable: - return self.splitter(self.content) + +class TextSplitter(ITextSplitter): + def __init__(self, text_splitter: Callable) -> None: + self.text_splitter = text_splitter + + def split_text(self, content) -> List[str]: + pages = self.text_splitter.split_text(content) + return pages + + def create_documents(self, content: List[str], metadatas: List[Dict]) -> List[Document]: + return self.text_splitter.create_documents(content, metadatas=metadatas) + + def split_documents(self, content: Document): + return self.text_splitter.split_documents(content) def character_text_splitter( - content: str, chunk_size: int = DEFAULT_CHUNK_SIZE, chunk_overlap: int = DEFAULT_CHUNK_OVERLAP, length_function: Callable = count_words, @@ -30,5 +49,10 @@ def character_text_splitter( length_function=length_function, separator=separator, ) - pages = text_splitter.split_text(content) - return pages + return text_splitter + + +def get_split_text(raw_data: str): + text_splitter = TextSplitter(character_text_splitter()) + texts = text_splitter.split_text(raw_data) + return texts \ No newline at end of file diff --git a/docker-compose.yml b/docker-compose.yml index 7c28fca..a691bfb 100644 --- a/docker-compose.yml +++ b/docker-compose.yml @@ -8,12 +8,25 @@ services: - "8000:8000" depends_on: - elasticsearch + - redis environment: - - AWS_SECRET_ACCESS_KEY= - - AWS_ACCESS_KEY_ID= - - ELASTICSEARCH_URL=http://elasticsearch:9200 + - AWS_SECRET_ACCESS_KEY=${AWS_VALID_SECRET_KEY} + - AWS_ACCESS_KEY_ID=${AWS_VALID_ACCESS_KEY} + - CELERY_BROKER_URL=redis://redis:6379/0 + - CELERY_RESULT_BACKEND=redis://redis:6379/0 + - SAGE_MAKER_AWS_KEY=${SAGE_MAKER_AWS_KEY} + - SAGE_MAKER_AWS_SECRET=${SAGE_MAKER_AWS_SECRET} + - AWS_STORAGE_ACCESS_KEY=${AWS_STORAGE_ACCESS_KEY} + - AWS_STORAGE_SECRET_KEY=${AWS_STORAGE_SECRET_KEY} + - AWS_STORAGE_BUCKET_NAME=${AWS_STORAGE_BUCKET_NAME} + - AWS_STORAGE_REGION_NAME=${AWS_STORAGE_REGION_NAME} + - ELASTICSEARCH_URL=${ELASTICSEARCH_URL} + networks: + - default + - sx + elasticsearch: - image: docker.elastic.co/elasticsearch/elasticsearch:8.9.1 + image: docker.elastic.co/elasticsearch/elasticsearch:7.17.16 ports: - "9200:9200" - "9300:9300" @@ -29,3 +42,33 @@ services: - http.cors.allow-credentials=true - network.publish_host=localhost - xpack.security.enabled=false + networks: + - default + - sx + + celery: + build: . + command: celery -A app worker --loglevel=info + environment: + - CELERY_BROKER_URL=redis://redis:6379/0 + - CELERY_RESULT_BACKEND=redis://redis:6379/0 + - SAGE_MAKER_AWS_KEY=${SAGE_MAKER_AWS_KEY} + - SAGE_MAKER_AWS_SECRET=${SAGE_MAKER_AWS_SECRET} + - AWS_STORAGE_ACCESS_KEY=${AWS_STORAGE_ACCESS_KEY} + - AWS_STORAGE_SECRET_KEY=${AWS_STORAGE_SECRET_KEY} + - AWS_STORAGE_BUCKET_NAME=${AWS_STORAGE_BUCKET_NAME} + - AWS_STORAGE_REGION_NAME=${AWS_STORAGE_REGION_NAME} + - ELASTICSEARCH_URL=${ELASTICSEARCH_URL} + networks: + - default + - sx + depends_on: + - app + - redis + + redis: + image: redis:7 + +networks: + sx: + external: true \ No newline at end of file diff --git a/poetry.lock b/poetry.lock index 0a2b1be..747a8de 100644 --- a/poetry.lock +++ b/poetry.lock @@ -2,111 +2,99 @@ [[package]] name = "aiohttp" -version = "3.8.5" +version = "3.9.1" description = "Async http client/server framework (asyncio)" optional = false -python-versions = ">=3.6" +python-versions = ">=3.8" files = [ - {file = "aiohttp-3.8.5-cp310-cp310-macosx_10_9_universal2.whl", hash = "sha256:a94159871304770da4dd371f4291b20cac04e8c94f11bdea1c3478e557fbe0d8"}, - {file = "aiohttp-3.8.5-cp310-cp310-macosx_10_9_x86_64.whl", hash = "sha256:13bf85afc99ce6f9ee3567b04501f18f9f8dbbb2ea11ed1a2e079670403a7c84"}, - {file = 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build-backend = "poetry.core.masonry.api" + + +[tool.taskipy.tasks] +test = 'poetry run coverage run -m unittest discover ./app/tests/' +post_test = 'coverage html' +run = 'uvicorn app.main:main_app.api --reload' \ No newline at end of file