From be5ec7bfcfba014768a2235e23f72e4b50156b87 Mon Sep 17 00:00:00 2001 From: Alisson Date: Fri, 10 Nov 2023 13:24:09 -0300 Subject: [PATCH 01/29] add character text splitter --- app/tests/test_text_splitter.py | 16 +++++++++++++ app/text_splitters/__init__.py | 0 app/text_splitters/text_splitters.py | 34 ++++++++++++++++++++++++++++ app/util.py | 4 ++++ poetry.lock | 16 ++++++++++++- pyproject.toml | 1 + 6 files changed, 70 insertions(+), 1 deletion(-) create mode 100644 app/tests/test_text_splitter.py create mode 100644 app/text_splitters/__init__.py create mode 100644 app/text_splitters/text_splitters.py diff --git a/app/tests/test_text_splitter.py b/app/tests/test_text_splitter.py new file mode 100644 index 0000000..dfd9a8f --- /dev/null +++ b/app/tests/test_text_splitter.py @@ -0,0 +1,16 @@ +import unittest +from app.text_splitters.text_splitters import ( + TextSplitter, character_text_splitter +) +from lorem_text import lorem + + +class TestProductsHandler(unittest.TestCase): + def setUp(self): + self.text = lorem.paragraphs(5) + + def test_character_text_splitter(self): + splitter = TextSplitter(character_text_splitter, self.text) + chunks = splitter.split_text() + self.assertEqual(type(chunks), list) + self.assertGreaterEqual(len(chunks), len(chunks)) diff --git a/app/text_splitters/__init__.py b/app/text_splitters/__init__.py new file mode 100644 index 0000000..e69de29 diff --git a/app/text_splitters/text_splitters.py b/app/text_splitters/text_splitters.py new file mode 100644 index 0000000..d07c6f5 --- /dev/null +++ b/app/text_splitters/text_splitters.py @@ -0,0 +1,34 @@ +from typing import Callable, List +from langchain.text_splitter import CharacterTextSplitter +from app.util import count_words +import os + +DEFAULT_CHUNK_SIZE = os.environ.get("DEFAULT_CHUNK_SIZE", 75) +DEFAULT_CHUNK_OVERLAP = os.environ.get("DEFAULT_CHUNK_OVERLAP", 75) +DEFAULT_SEPARATOR = os.environ.get("DEFAULT_SEPARATOR", "\n") + + +class TextSplitter: + def __init__(self, splitter: Callable, content: str) -> None: + self.splitter = splitter + self.content = content + + def split_text(self) -> Callable: + return self.splitter(self.content) + + +def character_text_splitter( + content: str, + chunk_size: int = DEFAULT_CHUNK_SIZE, + chunk_overlap: int = DEFAULT_CHUNK_OVERLAP, + length_function: Callable = count_words, + separator: str = DEFAULT_SEPARATOR) -> List: + + text_splitter = CharacterTextSplitter( + chunk_size=chunk_size, + chunk_overlap=chunk_overlap, + length_function=length_function, + separator=separator, + ) + pages = text_splitter.split_text(content) + return pages diff --git a/app/util.py b/app/util.py index f4be75f..a4c0aa7 100644 --- a/app/util.py +++ b/app/util.py @@ -14,3 +14,7 @@ def transform_input(self, inputs: list[str], model_kwargs: dict) -> bytes: def transform_output(self, output: bytes) -> list[list[float]]: response_json = json.loads(output.read().decode("utf-8")) return response_json["vectors"] + + +def count_words(string: str): + return len(string.split()) diff --git a/poetry.lock b/poetry.lock index 244f0b9..0a2b1be 100644 --- a/poetry.lock +++ b/poetry.lock @@ -983,6 +983,20 @@ files = [ pydantic = ">=1,<3" requests = ">=2,<3" +[[package]] +name = "lorem-text" +version = "2.1" +description = "Dummy lorem ipsum text generator" +optional = false +python-versions = ">=3.5" +files = [ + {file = "lorem_text-2.1-py2.py3-none-any.whl", hash = "sha256:b512779addd08dcc221460ce428f7911b198f66c5763410f3de6d788eb62ceb3"}, + {file = "lorem_text-2.1.tar.gz", hash = "sha256:b984b5570295084012f5a9385672bab3470965c943b73d8d71a6efcd7a62b5c3"}, +] + +[package.dependencies] +Click = ">=7.0" + [[package]] name = "lxml" version = "4.9.3" @@ -2581,4 +2595,4 @@ multidict = ">=4.0" [metadata] lock-version = "2.0" python-versions = ">=3.10,<3.13" -content-hash = "aa2c338bd2145768e8425023ef0e4c40a884927f5b8d3450c7287f08192eb1f7" +content-hash = "f3004bf6bca262881dee15c649b25b3228066e1619c8c8dc36c5fbeb70756376" diff --git a/pyproject.toml b/pyproject.toml index 641b211..95666ae 100644 --- a/pyproject.toml +++ b/pyproject.toml @@ -29,6 +29,7 @@ black = "^23.9.1" reportlab = "^4.0.7" xlsxwriter = "^3.1.9" flake8 = "^6.1.0" +lorem-text = "^2.1" [build-system] requires = ["poetry-core"] From 192cb496d85107bea830e3ce271bd817f2f8f744 Mon Sep 17 00:00:00 2001 From: Alisson Date: Fri, 10 Nov 2023 15:06:54 -0300 Subject: [PATCH 02/29] add embbeddings --- app/embedders/__init__.py | 0 app/embedders/embedders.py | 64 ++++++++++++++++++++++++++++++++++++++ 2 files changed, 64 insertions(+) create mode 100644 app/embedders/__init__.py create mode 100644 app/embedders/embedders.py diff --git a/app/embedders/__init__.py b/app/embedders/__init__.py new file mode 100644 index 0000000..e69de29 diff --git a/app/embedders/embedders.py b/app/embedders/embedders.py new file mode 100644 index 0000000..e0ea4a9 --- /dev/null +++ b/app/embedders/embedders.py @@ -0,0 +1,64 @@ +from pydantic import model_validator, root_validator +import time +from langchain.embeddings import SagemakerEndpointEmbeddings +from typing import Dict, List + + +class SagemakerEndpointEmbeddingsKeys(SagemakerEndpointEmbeddings): + aws_key: str = "" + aws_secret: str = "" + + def embed_documents( + self, texts: List[str], chunk_size: int = 32 + ) -> List[List[float]]: + """Compute doc embeddings using a SageMaker Inference Endpoint. + + Args: + texts: The list of texts to embed. + chunk_size: The chunk size defines how many input texts will + be grouped together as request. If None, will use the + chunk size specified by the class. + + + Returns: + List of embeddings, one for each text. + """ + results = [] + _chunk_size = len(texts) if chunk_size > len(texts) else chunk_size + for i in range(0, len(texts), _chunk_size): + response = self._embedding_func(texts[i:i + _chunk_size]) + results.extend(response) + return results + + def _embedding_func(self, texts: List[str]) -> List[List[float]]: + """Call out to SageMaker Inference embedding endpoint.""" + # replace newlines, which can negatively affect performance. + texts = list(map(lambda x: x.replace("\n", " "), texts)) + _model_kwargs = self.model_kwargs or {} + _endpoint_kwargs = self.endpoint_kwargs or {} + + body = self.content_handler.transform_input(texts, _model_kwargs) + content_type = self.content_handler.content_type + accepts = self.content_handler.accepts + + # send request + while True: + try: + response = self.client.invoke_endpoint( + EndpointName=self.endpoint_name, + Body=body, + ContentType=content_type, + Accept=accepts, + **_endpoint_kwargs, + ) + return self.content_handler.transform_output(response["Body"]) + except Exception as e: + print( + f"Error raised by inference endpoint: {e}\nBody: {body}. Trying again in 5 seconds." + ) + time.sleep(60 * 5) + + raise ValueError( + f"Error raised by inference endpoint: {e}. Trying again in 5 seconds." + ) + return self.content_handler.transform_output(response["Body"]) \ No newline at end of file From 11c02097ab1741e0f9218e7e095f67b8f2092ddd Mon Sep 17 00:00:00 2001 From: Alisson Date: Thu, 16 Nov 2023 18:12:59 -0300 Subject: [PATCH 03/29] temp code --- app/config.py | 16 ++ app/downloaders/__init__.py | 19 +++ app/downloaders/s3/__init__.py | 0 app/downloaders/s3/file_downloader.py | 50 ++++++ app/embedders/embedders.py | 19 ++- app/files/__init__.py | 0 app/handlers/content_bases.py | 79 ++++++++++ app/indexer/content_bases.py | 47 ++++++ app/loaders/loaders.py | 10 ++ app/main.py | 29 +++- app/store/elasticsearch_vector_store.py | 29 +++- app/text_splitters/text_splitters.py | 20 ++- poetry.lock | 194 +++++++----------------- pyproject.toml | 2 + 14 files changed, 366 insertions(+), 148 deletions(-) create mode 100644 app/downloaders/__init__.py create mode 100644 app/downloaders/s3/__init__.py create mode 100644 app/downloaders/s3/file_downloader.py create mode 100644 app/files/__init__.py create mode 100644 app/handlers/content_bases.py create mode 100644 app/indexer/content_bases.py diff --git a/app/config.py b/app/config.py index 67b68f5..f285c6c 100644 --- a/app/config.py +++ b/app/config.py @@ -1,5 +1,7 @@ import os +from dotenv import load_dotenv +load_dotenv() class AppConfig: def __init__(self): @@ -24,3 +26,17 @@ def __init__(self): "HUGGINGFACE_API_TOKEN", "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" ), } + + self.sagemaker_aws ={ + "endpoint_name": os.environ.get( + "SAGEMAKER_ENDPOINT_NAME", + "huggingface-pytorch-inference-2023-10-25-14-25-59-713", + ), + "region_name": os.environ.get("SAGEMAKER_REGION_NAME", "us-east-1"), + "aws_key": os.environ.get("SAGE_MAKER_AWS_KEY"), + "aws_secret": os.environ.get("SAGE_MAKER_AWS_SECRET"), + } + + self.content_base_index_name = os.environ.get( + "INDEX_PRODUCTS_NAME", "content_bases" + ) diff --git a/app/downloaders/__init__.py b/app/downloaders/__init__.py new file mode 100644 index 0000000..cd93f65 --- /dev/null +++ b/app/downloaders/__init__.py @@ -0,0 +1,19 @@ +from abc import ABC, abstractmethod + + +class IFileDownloader(ABC): + @abstractmethod + def authenticate(self): + pass + + @abstractmethod + def download_file(self): + pass + + @abstractmethod + def download_file_batch(self): + pass + + @abstractmethod + def download_file_bulk(self): + pass diff --git a/app/downloaders/s3/__init__.py b/app/downloaders/s3/__init__.py new file mode 100644 index 0000000..e69de29 diff --git a/app/downloaders/s3/file_downloader.py b/app/downloaders/s3/file_downloader.py new file mode 100644 index 0000000..c32d495 --- /dev/null +++ b/app/downloaders/s3/file_downloader.py @@ -0,0 +1,50 @@ +import os +import boto3 +from app.downloaders import IFileDownloader +from fastapi.logger import logger +from urllib.parse import urlparse +from typing import Tuple, List + +class S3FileDownloader(IFileDownloader): + + def __init__(self, + access_key: str, + secret_key: str, + bucket_name: str = os.environ.get("AWS_STORAGE_BUCKET_NAME"), + ) -> None: + self.bucket_name = bucket_name + self.access_key = access_key + self.secret_key = secret_key + self.client = self.authenticate() + + def authenticate(self): + return boto3.client( + "s3", + aws_access_key_id=self.access_key, + aws_secret_access_key=self.secret_key + ) + + def download_file(self, file_name): + bucket = self.bucket_name + key = file_name + local_path = f"app/files/{file_name}" + + self.client.download_file(bucket, key, local_path) + + def download_file_batch(self): + raise NotImplementedError + + def download_file_bulk(self): + raise NotImplementedError + + +def get_s3_bucket_and_file_name(file_url: str)-> Tuple[str, ...]: + result = urlparse(file_url) + bucket_name = result.netloc.split('.s3')[0] + file_name = result.path.strip('/') + return bucket_name, file_name + + +def download_file(file_downloader, file_name: str): + handler = file_downloader + handler.download_file(file_name) \ No newline at end of file diff --git a/app/embedders/embedders.py b/app/embedders/embedders.py index e0ea4a9..21eaf64 100644 --- a/app/embedders/embedders.py +++ b/app/embedders/embedders.py @@ -1,4 +1,4 @@ -from pydantic import model_validator, root_validator +from pydantic import root_validator import time from langchain.embeddings import SagemakerEndpointEmbeddings from typing import Dict, List @@ -8,6 +8,21 @@ class SagemakerEndpointEmbeddingsKeys(SagemakerEndpointEmbeddings): aws_key: str = "" aws_secret: str = "" + @root_validator(skip_on_failure=True) + def validate_environment(cls, values: Dict) -> Dict: + import boto3 + + session = boto3.Session( + aws_access_key_id=values["aws_key"], + aws_secret_access_key=values["aws_secret"] + ) + + values["client"] = session.client( + "sagemaker-runtime", region_name=values["region_name"] + ) + + return values + def embed_documents( self, texts: List[str], chunk_size: int = 32 ) -> List[List[float]]: @@ -54,7 +69,7 @@ def _embedding_func(self, texts: List[str]) -> List[List[float]]: return self.content_handler.transform_output(response["Body"]) except Exception as e: print( - f"Error raised by inference endpoint: {e}\nBody: {body}. Trying again in 5 seconds." + f"Error raised by inference endpoint: {e}\nBody: . Trying again in 5 seconds." ) time.sleep(60 * 5) diff --git a/app/files/__init__.py b/app/files/__init__.py new file mode 100644 index 0000000..e69de29 diff --git a/app/handlers/content_bases.py b/app/handlers/content_bases.py new file mode 100644 index 0000000..5532ee5 --- /dev/null +++ b/app/handlers/content_bases.py @@ -0,0 +1,79 @@ +from fastapi import APIRouter +from fastapi.logger import logger +from pydantic import BaseModel + +from app.handlers import IDocumentHandler +from app.indexer import IDocumentIndexer +from app.downloaders import IFileDownloader + +from uuid import UUID +from app.text_splitters.text_splitters import get_split_text +from app.downloaders.s3.file_downloader import download_file, get_s3_bucket_and_file_name + + +class ContentBaseIndexRequest(BaseModel): + file_url: str + document_type: str + base_uuid: UUID + + +class ContentBaseIndexResponse(BaseModel): + file_url: str + document_type: str + base_uuid: UUID + + +def get_raw_data(file_name, file_type): + from app.loaders.loaders import supported_loaders, DataLoader + file_path = f'app/files/{file_name}' + loader = supported_loaders.get(file_type) + data_loader = DataLoader(loader, file_path) + return data_loader.raw_text() + +def get_loaded_data(file_name, file_type): + from app.loaders.loaders import supported_loaders, DataLoader + file_path = f'app/files/{file_name}' + loader = supported_loaders.get(file_type) + data_loader = DataLoader(loader, file_path) + return data_loader.load() + + +class ContentBaseHandler(IDocumentHandler): + def __init__(self, content_base_indexer: IDocumentIndexer, file_downloader: IFileDownloader): + self.content_base_indexer = content_base_indexer + self.router = APIRouter() + self.router.add_api_route( + "/content_base/index", endpoint=self.index, methods=["PUT"] + ) + self.file_downloader = file_downloader + + def index(self, request: ContentBaseIndexRequest): + bucket_name, file_name = get_s3_bucket_and_file_name(request.file_url) + + download_file(self.file_downloader, file_name) + + raw_data = get_raw_data(file_name, request.document_type) + + metadatas = {'source': file_name, "content_base_uuid": str(request.base_uuid)} + + texts = get_split_text(raw_data) + + self.content_base_indexer.index(texts, metadatas) + + return ContentBaseIndexResponse( + file_url=request.file_url, + document_type=request.document_type, + base_uuid=request.base_uuid + ) + + def batch_index(self): + raise NotImplementedError + + def delete(self): + raise NotImplementedError + + def delete_batch(self): + raise NotImplementedError + + def search(self): + raise NotImplementedError diff --git a/app/indexer/content_bases.py b/app/indexer/content_bases.py new file mode 100644 index 0000000..52f0fd8 --- /dev/null +++ b/app/indexer/content_bases.py @@ -0,0 +1,47 @@ +from langchain.docstore.document import Document + +from app.handlers.products import Product +from app.indexer import IDocumentIndexer +from app.store import IStorage +from typing import List +from uuid import UUID +from fastapi.logger import logger + + +class ContentBaseIndexer(IDocumentIndexer): + def __init__(self, storage: IStorage): + self.storage = storage + + def index(self, texts: List, metadatas: dict): + results = self._search_products_by_content_base_uuid( + content_base_uuid=metadatas.get('content_base_uuid') + ) + ids = [] + if len(results) > 0: + ids = [item["_id"] for item in results] + self.storage.delete(ids=ids) + + docs = [ + Document(page_content=text, metadata=metadatas) + for text in texts + ] + + return self.storage.save(docs) + + def index_batch(self, catalog_id: str, products: list[Product]): + raise NotImplementedError + + def search(self, search, filter=None, threshold=0.1) -> list[Product]: + raise NotImplementedError + + def _search_products_by_content_base_uuid(self, content_base_uuid: UUID): + search_filter = { + "metadata.content_base_uuid": content_base_uuid + } + return self.storage.query_search(search_filter) + + def delete(self, catalog_id, product_retailer_id): + raise NotImplementedError + + def delete_batch(self, catalog_id, product_retailer_ids): + raise NotImplementedError \ No newline at end of file diff --git a/app/loaders/loaders.py b/app/loaders/loaders.py index bc53ad8..b080d34 100644 --- a/app/loaders/loaders.py +++ b/app/loaders/loaders.py @@ -50,3 +50,13 @@ def xlsx_loader(file: str) -> Callable: """Loads .xlsx and .xls files""" loader = UnstructuredExcelLoader(file, mode="elements") return loader.load() + + +supported_loaders = { + 'txt': txt_loader, + 'pdf': pdf_loader, + 'doc': docx_loader, + 'docx': docx_loader, + 'xls': xlsx_loader, + 'xlsx': xlsx_loader, +} \ No newline at end of file diff --git a/app/main.py b/app/main.py index 5558f05..e3bb3be 100644 --- a/app/main.py +++ b/app/main.py @@ -7,11 +7,19 @@ from app.handlers.products import ProductsHandler from app.indexer import IDocumentIndexer from app.indexer.products import ProductsIndexer -from app.store.elasticsearch_vector_store import ElasticsearchVectorStoreIndex +from app.store.elasticsearch_vector_store import ElasticsearchVectorStoreIndex, ContentBaseElasticsearchVectorStoreIndex from app.config import AppConfig from app.util import ContentHandler +from app.handlers.content_bases import ContentBaseHandler +from app.indexer.content_bases import ContentBaseIndexer +from app.downloaders.s3.file_downloader import S3FileDownloader +import os +from fastapi.logger import logger +from app.embedders.embedders import SagemakerEndpointEmbeddingsKeys + + class App: api: FastAPI config: AppConfig @@ -30,6 +38,15 @@ def __init__(self, config: AppConfig): "huggingfacehub_api_token" ], ) + elif config.embedding_type == "document-indexing": # change to self.custom_embedding, should be able to use sagemaker to product indexing + content_handler = ContentHandler() + self.embeddings = SagemakerEndpointEmbeddingsKeys( + aws_key=config.sagemaker_aws["aws_key"], + aws_secret=config.sagemaker_aws["aws_secret"], + endpoint_name=config.sagemaker_aws["endpoint_name"], + region_name=config.sagemaker_aws["region_name"], + content_handler=content_handler, + ) else: # sagemaker by default content_handler = ContentHandler() self.embeddings = SagemakerEndpointEmbeddings( @@ -49,6 +66,16 @@ def __init__(self, config: AppConfig): self.products_handler = ProductsHandler(self.products_indexer) self.api.include_router(self.products_handler.router) + self.content_base_vectorstore = ElasticVectorSearch( + elasticsearch_url=config.es_url, + index_name=config.content_base_index_name, + embedding=self.embeddings, + ) + self.custom_elasticStore = ContentBaseElasticsearchVectorStoreIndex(self.content_base_vectorstore) + self.file_downloader = S3FileDownloader(os.environ.get("AWS_STORAGE_ACCESS_KEY"), os.environ.get("AWS_STORAGE_SECRET_KEY")) + self.content_ai_indexer = ContentBaseIndexer(self.custom_elasticStore) + self.content_ai_handler = ContentBaseHandler(self.content_ai_indexer, self.file_downloader) + self.api.include_router(self.content_ai_handler.router) config = AppConfig() main_app = App(config) diff --git a/app/store/elasticsearch_vector_store.py b/app/store/elasticsearch_vector_store.py index c237613..9f2417f 100644 --- a/app/store/elasticsearch_vector_store.py +++ b/app/store/elasticsearch_vector_store.py @@ -3,7 +3,7 @@ from app.store import IStorage - +from fastapi.logger import logger class ElasticsearchVectorStoreIndex(IStorage): def __init__(self, vectorstore: VectorStore, score=1.55): self.vectorstore = vectorstore @@ -50,3 +50,30 @@ def query_search(self, search_filter: dict) -> list[dict]: def delete(self, ids: list[str] = []) -> bool: return self.vectorstore.delete(ids) + +class ContentBaseElasticsearchVectorStoreIndex(ElasticsearchVectorStoreIndex): + + def save(self, docs: list[Document])-> list[str]: + res = self.vectorstore.from_documents(docs, self.vectorstore.embeddings, index_name="content_bases") + return res + + def query_search(self, search_filter: dict) -> list[dict]: + match_field: str = list(search_filter.keys())[0] + match_value: str = search_filter[match_field] + + query_script = { + "bool": { + "must": [{"match": {match_field: match_value}}], + } + } + try: + self.vectorstore.client.indices.get(index=self.vectorstore.index_name) + except Exception as e: + return [] + + source = ["metadata"] + response = self.vectorstore.client.search( + index=self.vectorstore.index_name, query=query_script, source=source + ) + hits = [hit for hit in response["hits"]["hits"]] + return hits \ No newline at end of file diff --git a/app/text_splitters/text_splitters.py b/app/text_splitters/text_splitters.py index d07c6f5..f0f3d01 100644 --- a/app/text_splitters/text_splitters.py +++ b/app/text_splitters/text_splitters.py @@ -9,16 +9,19 @@ class TextSplitter: - def __init__(self, splitter: Callable, content: str) -> None: - self.splitter = splitter + def __init__(self, text_splitter: Callable, content: str) -> None: + self.text_splitter = text_splitter self.content = content def split_text(self) -> Callable: - return self.splitter(self.content) + pages = self.text_splitter.split_text(self.content) + return pages + + def create_documents(self, metadatas: dict): + return self.text_splitter.create_documents(self.content, metadatas=metadatas) def character_text_splitter( - content: str, chunk_size: int = DEFAULT_CHUNK_SIZE, chunk_overlap: int = DEFAULT_CHUNK_OVERLAP, length_function: Callable = count_words, @@ -30,5 +33,10 @@ def character_text_splitter( length_function=length_function, separator=separator, ) - pages = text_splitter.split_text(content) - return pages + return text_splitter + + +def get_split_text(raw_data: str): + text_splitter = TextSplitter(character_text_splitter(), raw_data) + texts = text_splitter.split_text() + return texts \ No newline at end of file diff --git a/poetry.lock b/poetry.lock index 0a2b1be..7af303c 100644 --- a/poetry.lock +++ b/poetry.lock @@ -122,17 +122,6 @@ files = [ [package.dependencies] frozenlist = ">=1.1.0" -[[package]] -name = "annotated-types" -version = "0.5.0" -description = "Reusable constraint types to use with typing.Annotated" -optional = false -python-versions = ">=3.7" -files = [ - {file = "annotated_types-0.5.0-py3-none-any.whl", hash = "sha256:58da39888f92c276ad970249761ebea80ba544b77acddaa1a4d6cf78287d45fd"}, - {file = "annotated_types-0.5.0.tar.gz", hash = "sha256:47cdc3490d9ac1506ce92c7aaa76c579dc3509ff11e098fc867e5130ab7be802"}, -] - [[package]] name = "anyio" version = "3.7.1" @@ -1568,140 +1557,55 @@ files = [ [[package]] name = "pydantic" -version = "2.3.0" -description = "Data validation using Python type hints" +version = "1.10.13" +description = "Data validation and settings management using python type hints" optional = false python-versions = ">=3.7" files = [ - {file = "pydantic-2.3.0-py3-none-any.whl", hash = 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key-value pairs from a .env file and set them as environment variables" +optional = false +python-versions = ">=3.8" +files = [ + {file = "python-dotenv-1.0.0.tar.gz", hash = "sha256:a8df96034aae6d2d50a4ebe8216326c61c3eb64836776504fcca410e5937a3ba"}, + {file = "python_dotenv-1.0.0-py3-none-any.whl", hash = "sha256:f5971a9226b701070a4bf2c38c89e5a3f0d64de8debda981d1db98583009122a"}, +] + +[package.extras] +cli = ["click (>=5.0)"] + [[package]] name = "python-iso639" version = "2023.6.15" @@ -2595,4 +2513,4 @@ multidict = ">=4.0" [metadata] lock-version = "2.0" python-versions = ">=3.10,<3.13" -content-hash = "f3004bf6bca262881dee15c649b25b3228066e1619c8c8dc36c5fbeb70756376" +content-hash = "3a18802da80a6986003aa969dc136ca179cac1a9a5d8194bc4aaf38e46c48c6e" diff --git a/pyproject.toml b/pyproject.toml index 95666ae..a4e49d7 100644 --- a/pyproject.toml +++ b/pyproject.toml @@ -21,6 +21,8 @@ docx2txt = "^0.8" networkx = "^3.2.1" pandas = "^2.1.2" openpyxl = "^3.1.2" +python-dotenv = "^1.0.0" +pydantic = "1.10.13" [tool.poetry.group.dev.dependencies] From 78fdc2d8bbd80a771985156dae8aca56ead54571 Mon Sep 17 00:00:00 2001 From: Alisson Date: Fri, 1 Dec 2023 12:05:06 -0300 Subject: [PATCH 04/29] add celery to docker-compose --- Dockerfile | 1 + docker-compose.yml | 45 +++++++++++++++++++++++++++++++++++++++++++++ 2 files changed, 46 insertions(+) diff --git a/Dockerfile b/Dockerfile index 93f0713..ddb6f86 100644 --- a/Dockerfile +++ b/Dockerfile @@ -12,6 +12,7 @@ RUN poetry config virtualenvs.create false && \ COPY . . EXPOSE 8000 +EXPOSE 9200 COPY entrypoint.sh /entrypoint.sh diff --git a/docker-compose.yml b/docker-compose.yml index 7c28fca..1d14b97 100644 --- a/docker-compose.yml +++ b/docker-compose.yml @@ -8,10 +8,24 @@ services: - "8000:8000" depends_on: - elasticsearch + - redis environment: - AWS_SECRET_ACCESS_KEY= - AWS_ACCESS_KEY_ID= + - CELERY_BROKER_URL=redis://redis:6379/0 + - CELERY_RESULT_BACKEND=redis://redis:6379/0 + - SAGE_MAKER_AWS_KEY=${SAGE_MAKER_AWS_KEY} + - SAGE_MAKER_AWS_SECRET=${SAGE_MAKER_AWS_SECRET} + - AWS_STORAGE_ACCESS_KEY=${AWS_STORAGE_ACCESS_KEY} + - AWS_STORAGE_SECRET_KEY=${AWS_STORAGE_SECRET_KEY} + - AWS_STORAGE_BUCKET_NAME=${AWS_STORAGE_BUCKET_NAME} + - AWS_STORAGE_REGION_NAME=${AWS_STORAGE_REGION_NAME} + - EMBEDDING_TYPE=document-indexing - ELASTICSEARCH_URL=http://elasticsearch:9200 + networks: + - default + - sx + elasticsearch: image: docker.elastic.co/elasticsearch/elasticsearch:8.9.1 ports: @@ -29,3 +43,34 @@ services: - http.cors.allow-credentials=true - network.publish_host=localhost - xpack.security.enabled=false + networks: + - default + - sx + + celery: + build: . + command: celery -A app worker --loglevel=info + environment: + - CELERY_BROKER_URL=redis://redis:6379/0 + - CELERY_RESULT_BACKEND=redis://redis:6379/0 + - SAGE_MAKER_AWS_KEY=${SAGE_MAKER_AWS_KEY} + - SAGE_MAKER_AWS_SECRET=${SAGE_MAKER_AWS_SECRET} + - AWS_STORAGE_ACCESS_KEY=${AWS_STORAGE_ACCESS_KEY} + - AWS_STORAGE_SECRET_KEY=${AWS_STORAGE_SECRET_KEY} + - AWS_STORAGE_BUCKET_NAME=${AWS_STORAGE_BUCKET_NAME} + - AWS_STORAGE_REGION_NAME=${AWS_STORAGE_REGION_NAME} + - EMBEDDING_TYPE=document-indexing + - ELASTICSEARCH_URL=http://elasticsearch:9200 + networks: + - default + - sx + depends_on: + - app + - redis + + redis: + image: redis:7 + +networks: + sx: + external: true \ No newline at end of file From ea12e1e35091dcfe60b573de8b1a12254859531b Mon Sep 17 00:00:00 2001 From: Alisson Date: Fri, 1 Dec 2023 14:51:45 -0300 Subject: [PATCH 05/29] add celery and redis dependencies 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hash = "sha256:271d63396460b6607b588555ea27a1a02b717ca2e3f2cf53bdde4013d7790929"}, + {file = "yarl-1.9.3.tar.gz", hash = "sha256:4a14907b597ec55740f63e52d7fee0e9ee09d5b9d57a4f399a7423268e457b57"}, ] [package.dependencies] @@ -2513,4 +2827,4 @@ multidict = ">=4.0" [metadata] lock-version = "2.0" python-versions = ">=3.10,<3.13" -content-hash = "3a18802da80a6986003aa969dc136ca179cac1a9a5d8194bc4aaf38e46c48c6e" +content-hash = "3652d3b09a8e5d13be163e0ebea7860edbfc36ece0e9e9a24abe49b73638b500" diff --git a/pyproject.toml b/pyproject.toml index a4e49d7..9124484 100644 --- a/pyproject.toml +++ b/pyproject.toml @@ -22,7 +22,9 @@ networkx = "^3.2.1" pandas = "^2.1.2" openpyxl = "^3.1.2" python-dotenv = "^1.0.0" -pydantic = "1.10.13" +pydantic = "2.3.0" +celery = "^5.3.6" +redis = "^5.0.1" [tool.poetry.group.dev.dependencies] From b03e32e2be1a7e4a4a3ebd0c5c47ddc88f28a697 Mon Sep 17 00:00:00 2001 From: Alisson Date: Fri, 1 Dec 2023 14:52:40 -0300 Subject: [PATCH 06/29] fix root_validator deprecated warning --- app/embedders/embedders.py | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/app/embedders/embedders.py b/app/embedders/embedders.py index 21eaf64..4de451a 100644 --- a/app/embedders/embedders.py +++ b/app/embedders/embedders.py @@ -1,4 +1,4 @@ -from pydantic import root_validator +from pydantic.v1 import root_validator import time from langchain.embeddings import SagemakerEndpointEmbeddings from typing import Dict, List From 719acdccfc0c0f90e373c05ad4abfb75c9591244 Mon Sep 17 00:00:00 2001 From: Alisson Date: Fri, 1 Dec 2023 16:03:27 -0300 Subject: [PATCH 07/29] add S3 file downloader --- app/downloaders/__init__.py | 8 ++++++++ app/downloaders/exceptions.py | 2 ++ app/downloaders/s3/__init__.py | 1 + app/downloaders/s3/file_downloader.py | 6 +----- 4 files changed, 12 insertions(+), 5 deletions(-) create mode 100644 app/downloaders/exceptions.py diff --git a/app/downloaders/__init__.py b/app/downloaders/__init__.py index cd93f65..2e0f087 100644 --- a/app/downloaders/__init__.py +++ b/app/downloaders/__init__.py @@ -1,4 +1,5 @@ from abc import ABC, abstractmethod +from app.downloaders.exceptions import FileDownloaderException class IFileDownloader(ABC): @@ -17,3 +18,10 @@ def download_file_batch(self): @abstractmethod def download_file_bulk(self): pass + +def download_file(file_downloader, file_name: str) -> None: + handler = file_downloader + try: + handler.download_file(file_name) + except Exception as err: + raise FileDownloaderException(err) \ No newline at end of file diff --git a/app/downloaders/exceptions.py b/app/downloaders/exceptions.py new file mode 100644 index 0000000..fdcbc3f --- /dev/null +++ b/app/downloaders/exceptions.py @@ -0,0 +1,2 @@ +class FileDownloaderException(BaseException): + pass \ No newline at end of file diff --git a/app/downloaders/s3/__init__.py b/app/downloaders/s3/__init__.py index e69de29..7adb506 100644 --- a/app/downloaders/s3/__init__.py +++ b/app/downloaders/s3/__init__.py @@ -0,0 +1 @@ +from app.downloaders.s3.file_downloader import S3FileDownloader \ No newline at end of file diff --git a/app/downloaders/s3/file_downloader.py b/app/downloaders/s3/file_downloader.py index c32d495..8e9f6b9 100644 --- a/app/downloaders/s3/file_downloader.py +++ b/app/downloaders/s3/file_downloader.py @@ -5,6 +5,7 @@ from urllib.parse import urlparse from typing import Tuple, List + class S3FileDownloader(IFileDownloader): def __init__(self, @@ -43,8 +44,3 @@ def get_s3_bucket_and_file_name(file_url: str)-> Tuple[str, ...]: bucket_name = result.netloc.split('.s3')[0] file_name = result.path.strip('/') return bucket_name, file_name - - -def download_file(file_downloader, file_name: str): - handler = file_downloader - handler.download_file(file_name) \ No newline at end of file From f82c1d801c428bd3b9883dfdd8ca3a28802ecb4c Mon Sep 17 00:00:00 2001 From: Alisson Date: Fri, 1 Dec 2023 16:04:40 -0300 Subject: [PATCH 08/29] add celery and content bases api --- app/celery.py | 51 +++++++++++++++++++++++++++++++++++ app/config.py | 1 + app/handlers/content_bases.py | 51 ++++++++++------------------------- app/loaders/__init__.py | 18 +++++++++++++ app/loaders/loaders.py | 10 ------- app/main.py | 19 +++++++------ 6 files changed, 93 insertions(+), 57 deletions(-) create mode 100644 app/celery.py create mode 100644 app/loaders/__init__.py diff --git a/app/celery.py b/app/celery.py new file mode 100644 index 0000000..8cb4cc8 --- /dev/null +++ b/app/celery.py @@ -0,0 +1,51 @@ +import os +from celery import Celery + +from app.text_splitters.text_splitters import get_split_text +from app.loaders import load_file_and_get_raw_text +from typing import List, Dict +from fastapi.logger import logger +from app.downloaders.exceptions import FileDownloaderException +from app.downloaders import download_file + + +celery = Celery(__name__) +celery.conf.broker_url = os.environ.get( + "CELERY_BROKER_URL", "redis://localhost:6379" + ) +celery.conf.result_backend = os.environ.get( + "CELERY_RESULT_BACKEND", "redis://localhost:6379" + ) + + +def get_file_metadata(content_base: Dict) -> Dict[str, str]: + return { + 'source': content_base.get("filename"), + "content_base_uuid": str(content_base.get('content_base')) + } + + +@celery.task(name="index_file") +def index_file_data(content_base: Dict) -> bool: + from app.main import main_app + + filename: str = content_base.get("filename") + + try: + download_file(main_app.file_downloader, filename) + except FileDownloaderException as err: + logger.exception(err) + return False + + file_raw_text: str = load_file_and_get_raw_text( + filename, content_base.get('extension_file') + ) + metadatas: Dict[str, str] = get_file_metadata(content_base) + texts: List[str] = get_split_text(file_raw_text) + + try: + main_app.content_ai_indexer.index(texts, metadatas) + return True + except Exception as e: # TODO: handle exceptions + logger.exception(e) + return False diff --git a/app/config.py b/app/config.py index f285c6c..09b94e3 100644 --- a/app/config.py +++ b/app/config.py @@ -3,6 +3,7 @@ load_dotenv() + class AppConfig: def __init__(self): self.product_index_name = os.environ.get( diff --git a/app/handlers/content_bases.py b/app/handlers/content_bases.py index 5532ee5..c63cd3b 100644 --- a/app/handlers/content_bases.py +++ b/app/handlers/content_bases.py @@ -6,36 +6,21 @@ from app.indexer import IDocumentIndexer from app.downloaders import IFileDownloader -from uuid import UUID -from app.text_splitters.text_splitters import get_split_text -from app.downloaders.s3.file_downloader import download_file, get_s3_bucket_and_file_name +from app.celery import index_file_data, celery class ContentBaseIndexRequest(BaseModel): - file_url: str - document_type: str - base_uuid: UUID + file: str + filename: str + extension_file: str + task_uuid: str + content_base: str class ContentBaseIndexResponse(BaseModel): - file_url: str - document_type: str - base_uuid: UUID - - -def get_raw_data(file_name, file_type): - from app.loaders.loaders import supported_loaders, DataLoader - file_path = f'app/files/{file_name}' - loader = supported_loaders.get(file_type) - data_loader = DataLoader(loader, file_path) - return data_loader.raw_text() - -def get_loaded_data(file_name, file_type): - from app.loaders.loaders import supported_loaders, DataLoader - file_path = f'app/files/{file_name}' - loader = supported_loaders.get(file_type) - data_loader = DataLoader(loader, file_path) - return data_loader.load() + file: str + filename: str + task_uuid: str class ContentBaseHandler(IDocumentHandler): @@ -48,22 +33,14 @@ def __init__(self, content_base_indexer: IDocumentIndexer, file_downloader: IFil self.file_downloader = file_downloader def index(self, request: ContentBaseIndexRequest): - bucket_name, file_name = get_s3_bucket_and_file_name(request.file_url) - - download_file(self.file_downloader, file_name) - - raw_data = get_raw_data(file_name, request.document_type) - - metadatas = {'source': file_name, "content_base_uuid": str(request.base_uuid)} - - texts = get_split_text(raw_data) - self.content_base_indexer.index(texts, metadatas) + content_base = request.__dict__ + task = index_file_data.delay(content_base) return ContentBaseIndexResponse( - file_url=request.file_url, - document_type=request.document_type, - base_uuid=request.base_uuid + file=request.file, + filename=request.filename, + task_uuid=task.id, ) def batch_index(self): diff --git a/app/loaders/__init__.py b/app/loaders/__init__.py new file mode 100644 index 0000000..0785a91 --- /dev/null +++ b/app/loaders/__init__.py @@ -0,0 +1,18 @@ +from app.loaders.loaders import (DataLoader, txt_loader, pdf_loader, docx_loader, xlsx_loader) + + +supported_loaders = { + 'txt': txt_loader, + 'pdf': pdf_loader, + 'doc': docx_loader, + 'docx': docx_loader, + 'xls': xlsx_loader, + 'xlsx': xlsx_loader, +} + + +def load_file_and_get_raw_text(file_name: str, file_type: str): + file_path = f'app/files/{file_name}' + loader = supported_loaders.get(file_type) + data_loader = DataLoader(loader, file_path) + return data_loader.raw_text() \ No newline at end of file diff --git a/app/loaders/loaders.py b/app/loaders/loaders.py index b080d34..bc53ad8 100644 --- a/app/loaders/loaders.py +++ b/app/loaders/loaders.py @@ -50,13 +50,3 @@ def xlsx_loader(file: str) -> Callable: """Loads .xlsx and .xls files""" loader = UnstructuredExcelLoader(file, mode="elements") return loader.load() - - -supported_loaders = { - 'txt': txt_loader, - 'pdf': pdf_loader, - 'doc': docx_loader, - 'docx': docx_loader, - 'xls': xlsx_loader, - 'xlsx': xlsx_loader, -} \ No newline at end of file diff --git a/app/main.py b/app/main.py index e3bb3be..723a432 100644 --- a/app/main.py +++ b/app/main.py @@ -14,7 +14,7 @@ from app.handlers.content_bases import ContentBaseHandler from app.indexer.content_bases import ContentBaseIndexer -from app.downloaders.s3.file_downloader import S3FileDownloader +from app.downloaders.s3 import S3FileDownloader import os from fastapi.logger import logger from app.embedders.embedders import SagemakerEndpointEmbeddingsKeys @@ -38,15 +38,6 @@ def __init__(self, config: AppConfig): "huggingfacehub_api_token" ], ) - elif config.embedding_type == "document-indexing": # change to self.custom_embedding, should be able to use sagemaker to product indexing - content_handler = ContentHandler() - self.embeddings = SagemakerEndpointEmbeddingsKeys( - aws_key=config.sagemaker_aws["aws_key"], - aws_secret=config.sagemaker_aws["aws_secret"], - endpoint_name=config.sagemaker_aws["endpoint_name"], - region_name=config.sagemaker_aws["region_name"], - content_handler=content_handler, - ) else: # sagemaker by default content_handler = ContentHandler() self.embeddings = SagemakerEndpointEmbeddings( @@ -66,6 +57,14 @@ def __init__(self, config: AppConfig): self.products_handler = ProductsHandler(self.products_indexer) self.api.include_router(self.products_handler.router) + content_base_content_handler = ContentHandler() + self.content_base_embeddings = SagemakerEndpointEmbeddingsKeys( + aws_key=config.sagemaker_aws["aws_key"], + aws_secret=config.sagemaker_aws["aws_secret"], + endpoint_name=config.sagemaker_aws["endpoint_name"], + region_name=config.sagemaker_aws["region_name"], + content_handler=content_base_content_handler, + ) self.content_base_vectorstore = ElasticVectorSearch( elasticsearch_url=config.es_url, index_name=config.content_base_index_name, From 0d73358aa8d7ff0022e826310dd9d92043be8d77 Mon Sep 17 00:00:00 2001 From: Alisson Date: Tue, 12 Dec 2023 15:09:44 -0300 Subject: [PATCH 09/29] add IndexerFileManager --- app/celery.py | 42 +++++++---------------------- app/handlers/content_bases.py | 3 +-- app/indexer/indexer_file_manager.py | 42 +++++++++++++++++++++++++++++ app/main.py | 12 +++------ app/text_splitters/__init__.py | 1 + docker-compose.yml | 6 ++--- 6 files changed, 59 insertions(+), 47 deletions(-) create mode 100644 app/indexer/indexer_file_manager.py diff --git a/app/celery.py b/app/celery.py index 8cb4cc8..95cd25a 100644 --- a/app/celery.py +++ b/app/celery.py @@ -1,12 +1,9 @@ import os from celery import Celery -from app.text_splitters.text_splitters import get_split_text -from app.loaders import load_file_and_get_raw_text -from typing import List, Dict -from fastapi.logger import logger -from app.downloaders.exceptions import FileDownloaderException -from app.downloaders import download_file +from typing import Dict +from app.indexer.indexer_file_manager import IndexerFileManager +from app.downloaders.s3 import S3FileDownloader celery = Celery(__name__) @@ -18,34 +15,13 @@ ) -def get_file_metadata(content_base: Dict) -> Dict[str, str]: - return { - 'source': content_base.get("filename"), - "content_base_uuid": str(content_base.get('content_base')) - } - - @celery.task(name="index_file") def index_file_data(content_base: Dict) -> bool: from app.main import main_app - filename: str = content_base.get("filename") - - try: - download_file(main_app.file_downloader, filename) - except FileDownloaderException as err: - logger.exception(err) - return False - - file_raw_text: str = load_file_and_get_raw_text( - filename, content_base.get('extension_file') - ) - metadatas: Dict[str, str] = get_file_metadata(content_base) - texts: List[str] = get_split_text(file_raw_text) - - try: - main_app.content_ai_indexer.index(texts, metadatas) - return True - except Exception as e: # TODO: handle exceptions - logger.exception(e) - return False + file_downloader = S3FileDownloader( + os.environ.get("AWS_STORAGE_ACCESS_KEY"), + os.environ.get("AWS_STORAGE_SECRET_KEY") + ) + manager = IndexerFileManager(file_downloader, main_app.content_base_indexer) + return manager.index_file(content_base) diff --git a/app/handlers/content_bases.py b/app/handlers/content_bases.py index c63cd3b..a8e27a7 100644 --- a/app/handlers/content_bases.py +++ b/app/handlers/content_bases.py @@ -24,13 +24,12 @@ class ContentBaseIndexResponse(BaseModel): class ContentBaseHandler(IDocumentHandler): - def __init__(self, content_base_indexer: IDocumentIndexer, file_downloader: IFileDownloader): + def __init__(self, content_base_indexer: IDocumentIndexer): self.content_base_indexer = content_base_indexer self.router = APIRouter() self.router.add_api_route( "/content_base/index", endpoint=self.index, methods=["PUT"] ) - self.file_downloader = file_downloader def index(self, request: ContentBaseIndexRequest): diff --git a/app/indexer/indexer_file_manager.py b/app/indexer/indexer_file_manager.py new file mode 100644 index 0000000..b2f53de --- /dev/null +++ b/app/indexer/indexer_file_manager.py @@ -0,0 +1,42 @@ +from app.loaders import load_file_and_get_raw_text +from app.text_splitters import get_split_text +from typing import Dict, List +from fastapi.logger import logger + + +def get_file_metadata(content_base: Dict) -> Dict[str, str]: + return { + 'source': content_base.get("filename"), + "content_base_uuid": str(content_base.get('content_base')) + } + + +class IndexerFileManager: + + """Business rule to index a file""" + + def __init__(self, file_downloader, content_base_indexer) -> None: + self.file_downloader = file_downloader + self.content_base_indexer = content_base_indexer + + def index_file(self, content_base): + filename: str = content_base.get("filename") + + try: + self.file_downloader.download_file(filename) + except Exception as err: + logger.exception(err) + return False + + file_raw_text: str = load_file_and_get_raw_text( + filename, content_base.get('extension_file') + ) + metadatas: Dict[str, str] = get_file_metadata(content_base) + texts: List[str] = get_split_text(file_raw_text) + + try: + self.content_base_indexer.index(texts, metadatas) + return True + except Exception as e: # TODO: handle exceptions + logger.exception(e) + return False diff --git a/app/main.py b/app/main.py index 723a432..23cc841 100644 --- a/app/main.py +++ b/app/main.py @@ -14,9 +14,6 @@ from app.handlers.content_bases import ContentBaseHandler from app.indexer.content_bases import ContentBaseIndexer -from app.downloaders.s3 import S3FileDownloader -import os -from fastapi.logger import logger from app.embedders.embedders import SagemakerEndpointEmbeddingsKeys @@ -68,13 +65,12 @@ def __init__(self, config: AppConfig): self.content_base_vectorstore = ElasticVectorSearch( elasticsearch_url=config.es_url, index_name=config.content_base_index_name, - embedding=self.embeddings, + embedding=self.content_base_embeddings, ) self.custom_elasticStore = ContentBaseElasticsearchVectorStoreIndex(self.content_base_vectorstore) - self.file_downloader = S3FileDownloader(os.environ.get("AWS_STORAGE_ACCESS_KEY"), os.environ.get("AWS_STORAGE_SECRET_KEY")) - self.content_ai_indexer = ContentBaseIndexer(self.custom_elasticStore) - self.content_ai_handler = ContentBaseHandler(self.content_ai_indexer, self.file_downloader) - self.api.include_router(self.content_ai_handler.router) + self.content_base_indexer = ContentBaseIndexer(self.custom_elasticStore) + self.content_base_handler = ContentBaseHandler(self.content_base_indexer) + self.api.include_router(self.content_base_handler.router) config = AppConfig() main_app = App(config) diff --git a/app/text_splitters/__init__.py b/app/text_splitters/__init__.py index e69de29..c8a8d11 100644 --- a/app/text_splitters/__init__.py +++ b/app/text_splitters/__init__.py @@ -0,0 +1 @@ +from app.text_splitters.text_splitters import get_split_text diff --git a/docker-compose.yml b/docker-compose.yml index 1d14b97..510d23c 100644 --- a/docker-compose.yml +++ b/docker-compose.yml @@ -10,8 +10,8 @@ services: - elasticsearch - redis environment: - - AWS_SECRET_ACCESS_KEY= - - AWS_ACCESS_KEY_ID= + - AWS_SECRET_ACCESS_KEY=${AWS_VALID_SECRET_KEY} + - AWS_ACCESS_KEY_ID=${AWS_VALID_ACCESS_KEY} - CELERY_BROKER_URL=redis://redis:6379/0 - CELERY_RESULT_BACKEND=redis://redis:6379/0 - SAGE_MAKER_AWS_KEY=${SAGE_MAKER_AWS_KEY} @@ -20,7 +20,6 @@ services: - AWS_STORAGE_SECRET_KEY=${AWS_STORAGE_SECRET_KEY} - AWS_STORAGE_BUCKET_NAME=${AWS_STORAGE_BUCKET_NAME} - AWS_STORAGE_REGION_NAME=${AWS_STORAGE_REGION_NAME} - - EMBEDDING_TYPE=document-indexing - ELASTICSEARCH_URL=http://elasticsearch:9200 networks: - default @@ -59,7 +58,6 @@ services: - AWS_STORAGE_SECRET_KEY=${AWS_STORAGE_SECRET_KEY} - AWS_STORAGE_BUCKET_NAME=${AWS_STORAGE_BUCKET_NAME} - AWS_STORAGE_REGION_NAME=${AWS_STORAGE_REGION_NAME} - - EMBEDDING_TYPE=document-indexing - ELASTICSEARCH_URL=http://elasticsearch:9200 networks: - default From 0b2bf894df5e324925fea04b4c5a2ef6b75b341e Mon Sep 17 00:00:00 2001 From: Alisson Date: Thu, 14 Dec 2023 16:26:05 -0300 Subject: [PATCH 10/29] add content base search endpoint --- app/handlers/content_bases.py | 24 +++++++++++++++++++----- app/indexer/content_bases.py | 5 +++-- app/store/elasticsearch_vector_store.py | 7 ++++++- docker-compose.yml | 6 +++--- 4 files changed, 31 insertions(+), 11 deletions(-) diff --git a/app/handlers/content_bases.py b/app/handlers/content_bases.py index a8e27a7..e39817f 100644 --- a/app/handlers/content_bases.py +++ b/app/handlers/content_bases.py @@ -1,12 +1,11 @@ from fastapi import APIRouter -from fastapi.logger import logger from pydantic import BaseModel from app.handlers import IDocumentHandler from app.indexer import IDocumentIndexer -from app.downloaders import IFileDownloader -from app.celery import index_file_data, celery +from app.celery import index_file_data +from typing import List class ContentBaseIndexRequest(BaseModel): @@ -23,6 +22,17 @@ class ContentBaseIndexResponse(BaseModel): task_uuid: str +class ContentBaseSearchRequest(BaseModel): + search: str + filter: dict[str, str] = None + threshold: float = 1.5 + content_base: str + + +class ContentBaseSearchResponse(BaseModel): + response: List[str] + + class ContentBaseHandler(IDocumentHandler): def __init__(self, content_base_indexer: IDocumentIndexer): self.content_base_indexer = content_base_indexer @@ -30,6 +40,9 @@ def __init__(self, content_base_indexer: IDocumentIndexer): self.router.add_api_route( "/content_base/index", endpoint=self.index, methods=["PUT"] ) + self.router.add_api_route( + "/content_base/search", endpoint=self.search, methods=["GET"] + ) def index(self, request: ContentBaseIndexRequest): @@ -51,5 +64,6 @@ def delete(self): def delete_batch(self): raise NotImplementedError - def search(self): - raise NotImplementedError + def search(self, request: ContentBaseSearchRequest): + response = self.content_base_indexer.search(search=request.search.lower(), threshold=request.threshold) + return ContentBaseSearchResponse(response=response) diff --git a/app/indexer/content_bases.py b/app/indexer/content_bases.py index 52f0fd8..b6b9428 100644 --- a/app/indexer/content_bases.py +++ b/app/indexer/content_bases.py @@ -22,7 +22,7 @@ def index(self, texts: List, metadatas: dict): self.storage.delete(ids=ids) docs = [ - Document(page_content=text, metadata=metadatas) + Document(page_content=text.lower(), metadata=metadatas) for text in texts ] @@ -32,7 +32,8 @@ def index_batch(self, catalog_id: str, products: list[Product]): raise NotImplementedError def search(self, search, filter=None, threshold=0.1) -> list[Product]: - raise NotImplementedError + matched_responses = self.storage.search(search, filter, threshold) + return [doc.page_content for doc in matched_responses] def _search_products_by_content_base_uuid(self, content_base_uuid: UUID): search_filter = { diff --git a/app/store/elasticsearch_vector_store.py b/app/store/elasticsearch_vector_store.py index 9f2417f..7e3a621 100644 --- a/app/store/elasticsearch_vector_store.py +++ b/app/store/elasticsearch_vector_store.py @@ -51,6 +51,7 @@ def query_search(self, search_filter: dict) -> list[dict]: def delete(self, ids: list[str] = []) -> bool: return self.vectorstore.delete(ids) + class ContentBaseElasticsearchVectorStoreIndex(ElasticsearchVectorStoreIndex): def save(self, docs: list[Document])-> list[str]: @@ -76,4 +77,8 @@ def query_search(self, search_filter: dict) -> list[dict]: index=self.vectorstore.index_name, query=query_script, source=source ) hits = [hit for hit in response["hits"]["hits"]] - return hits \ No newline at end of file + return hits + + def search(self, search: str, filter=None, threshold=0.1) -> list[Document]: + docs = self.vectorstore.similarity_search_with_score(query=search, k=5, filter=filter) + return [doc[0] for doc in docs if doc[1] > threshold] diff --git a/docker-compose.yml b/docker-compose.yml index 510d23c..a691bfb 100644 --- a/docker-compose.yml +++ b/docker-compose.yml @@ -20,13 +20,13 @@ services: - AWS_STORAGE_SECRET_KEY=${AWS_STORAGE_SECRET_KEY} - AWS_STORAGE_BUCKET_NAME=${AWS_STORAGE_BUCKET_NAME} - AWS_STORAGE_REGION_NAME=${AWS_STORAGE_REGION_NAME} - - ELASTICSEARCH_URL=http://elasticsearch:9200 + - ELASTICSEARCH_URL=${ELASTICSEARCH_URL} networks: - default - sx elasticsearch: - image: docker.elastic.co/elasticsearch/elasticsearch:8.9.1 + image: docker.elastic.co/elasticsearch/elasticsearch:7.17.16 ports: - "9200:9200" - "9300:9300" @@ -58,7 +58,7 @@ services: - AWS_STORAGE_SECRET_KEY=${AWS_STORAGE_SECRET_KEY} - AWS_STORAGE_BUCKET_NAME=${AWS_STORAGE_BUCKET_NAME} - AWS_STORAGE_REGION_NAME=${AWS_STORAGE_REGION_NAME} - - ELASTICSEARCH_URL=http://elasticsearch:9200 + - ELASTICSEARCH_URL=${ELASTICSEARCH_URL} networks: - default - sx From 2b5693941f4985bad476a4643969468fc320ec5b Mon Sep 17 00:00:00 2001 From: Alisson Date: Fri, 15 Dec 2023 15:49:30 -0300 Subject: [PATCH 11/29] add token verification to content bases handler --- app/handlers/authorizations.py | 8 ++++++++ app/handlers/content_bases.py | 18 ++++++++++++------ app/indexer/content_bases.py | 13 ++++++------- 3 files changed, 26 insertions(+), 13 deletions(-) create mode 100644 app/handlers/authorizations.py diff --git a/app/handlers/authorizations.py b/app/handlers/authorizations.py new file mode 100644 index 0000000..9c37447 --- /dev/null +++ b/app/handlers/authorizations.py @@ -0,0 +1,8 @@ +import os +from fastapi import HTTPException + + +def token_verification(token: str): + if os.environ.get("NEXUS_AI_TOKEN") == token: + return + raise HTTPException(status_code=401, detail=[{"msg": str("Unauthorized")}]) \ No newline at end of file diff --git a/app/handlers/content_bases.py b/app/handlers/content_bases.py index e39817f..434c590 100644 --- a/app/handlers/content_bases.py +++ b/app/handlers/content_bases.py @@ -1,4 +1,4 @@ -from fastapi import APIRouter +from fastapi import APIRouter, Header from pydantic import BaseModel from app.handlers import IDocumentHandler @@ -6,6 +6,8 @@ from app.celery import index_file_data from typing import List +from typing import Annotated +from app.handlers.authorizations import token_verification class ContentBaseIndexRequest(BaseModel): @@ -26,7 +28,6 @@ class ContentBaseSearchRequest(BaseModel): search: str filter: dict[str, str] = None threshold: float = 1.5 - content_base: str class ContentBaseSearchResponse(BaseModel): @@ -44,8 +45,8 @@ def __init__(self, content_base_indexer: IDocumentIndexer): "/content_base/search", endpoint=self.search, methods=["GET"] ) - def index(self, request: ContentBaseIndexRequest): - + def index(self, request: ContentBaseIndexRequest, Authorization: Annotated[str | None, Header()] = None): + token_verification(Authorization) content_base = request.__dict__ task = index_file_data.delay(content_base) @@ -64,6 +65,11 @@ def delete(self): def delete_batch(self): raise NotImplementedError - def search(self, request: ContentBaseSearchRequest): - response = self.content_base_indexer.search(search=request.search.lower(), threshold=request.threshold) + def search(self, request: ContentBaseSearchRequest, Authorization: Annotated[str | None, Header()] = None): + token_verification(Authorization) + response = self.content_base_indexer.search( + search=request.search.lower(), + threshold=request.threshold, + filter=request.filter + ) return ContentBaseSearchResponse(response=response) diff --git a/app/indexer/content_bases.py b/app/indexer/content_bases.py index b6b9428..c479c73 100644 --- a/app/indexer/content_bases.py +++ b/app/indexer/content_bases.py @@ -5,7 +5,6 @@ from app.store import IStorage from typing import List from uuid import UUID -from fastapi.logger import logger class ContentBaseIndexer(IDocumentIndexer): @@ -13,7 +12,7 @@ def __init__(self, storage: IStorage): self.storage = storage def index(self, texts: List, metadatas: dict): - results = self._search_products_by_content_base_uuid( + results = self._search_docs_by_content_base_uuid( content_base_uuid=metadatas.get('content_base_uuid') ) ids = [] @@ -28,21 +27,21 @@ def index(self, texts: List, metadatas: dict): return self.storage.save(docs) - def index_batch(self, catalog_id: str, products: list[Product]): + def index_batch(self): raise NotImplementedError def search(self, search, filter=None, threshold=0.1) -> list[Product]: matched_responses = self.storage.search(search, filter, threshold) return [doc.page_content for doc in matched_responses] - def _search_products_by_content_base_uuid(self, content_base_uuid: UUID): + def _search_docs_by_content_base_uuid(self, content_base_uuid: UUID): search_filter = { "metadata.content_base_uuid": content_base_uuid } return self.storage.query_search(search_filter) - def delete(self, catalog_id, product_retailer_id): + def delete(self): raise NotImplementedError - def delete_batch(self, catalog_id, product_retailer_ids): - raise NotImplementedError \ No newline at end of file + def delete_batch(self): + raise NotImplementedError From 36f064a35e2603fc493d58f9912cab632d9d9248 Mon Sep 17 00:00:00 2001 From: Alisson Date: Tue, 19 Dec 2023 13:38:23 -0300 Subject: [PATCH 12/29] Add: NexusRESTClient; call nexus endpoint after indexing document --- app/celery.py | 4 ++++ app/handlers/content_bases.py | 22 ++++++++++++++++++++++ 2 files changed, 26 insertions(+) diff --git a/app/celery.py b/app/celery.py index 95cd25a..2a1cef6 100644 --- a/app/celery.py +++ b/app/celery.py @@ -5,6 +5,7 @@ from app.indexer.indexer_file_manager import IndexerFileManager from app.downloaders.s3 import S3FileDownloader +from app.handlers.content_bases import NexusRESTClient celery = Celery(__name__) celery.conf.broker_url = os.environ.get( @@ -24,4 +25,7 @@ def index_file_data(content_base: Dict) -> bool: os.environ.get("AWS_STORAGE_SECRET_KEY") ) manager = IndexerFileManager(file_downloader, main_app.content_base_indexer) + index_result: bool = manager.index_file(content_base) + NexusRESTClient().index_succedded(task_succeded=index_result, nexus_task_uuid=content_base.get("task_uuid")) + return manager.index_file(content_base) diff --git a/app/handlers/content_bases.py b/app/handlers/content_bases.py index 434c590..6d42bf9 100644 --- a/app/handlers/content_bases.py +++ b/app/handlers/content_bases.py @@ -9,6 +9,8 @@ from typing import Annotated from app.handlers.authorizations import token_verification +import requests, os + class ContentBaseIndexRequest(BaseModel): file: str @@ -73,3 +75,23 @@ def search(self, request: ContentBaseSearchRequest, Authorization: Annotated[str filter=request.filter ) return ContentBaseSearchResponse(response=response) + + +class NexusRESTClient: + token = os.environ.get("NEXUS_AI_TOKEN") + base_url = os.environ.get("NEXUS_AI_URL") + + def __init__(self) -> None: + self.headers = { + 'Authorization': self.token, + 'Content-Type': "application/json" + } + + def index_succedded(self, task_succeded: bool, nexus_task_uuid: str) -> None: + endpoint = f'{self.base_url}/api/v1/content-base-file' + data = { + "status": int(task_succeded), + "task_uuid": nexus_task_uuid, + } + response = requests.patch(url=endpoint, data=data, headers=self.headers) + response.raise_for_status() From f15a4bb25936a1ee63f6f2ce3045e8b3413e5513 Mon Sep 17 00:00:00 2001 From: Alisson Date: Wed, 27 Dec 2023 14:32:53 -0300 Subject: [PATCH 13/29] fix: NexusRESTClient circular import --- app/celery.py | 2 +- app/handlers/content_bases.py | 22 ---------------------- app/handlers/nexus.py | 24 ++++++++++++++++++++++++ 3 files changed, 25 insertions(+), 23 deletions(-) create mode 100644 app/handlers/nexus.py diff --git a/app/celery.py b/app/celery.py index 2a1cef6..6e00643 100644 --- a/app/celery.py +++ b/app/celery.py @@ -5,7 +5,7 @@ from app.indexer.indexer_file_manager import IndexerFileManager from app.downloaders.s3 import S3FileDownloader -from app.handlers.content_bases import NexusRESTClient +from app.handlers.nexus import NexusRESTClient celery = Celery(__name__) celery.conf.broker_url = os.environ.get( diff --git a/app/handlers/content_bases.py b/app/handlers/content_bases.py index 6d42bf9..434c590 100644 --- a/app/handlers/content_bases.py +++ b/app/handlers/content_bases.py @@ -9,8 +9,6 @@ from typing import Annotated from app.handlers.authorizations import token_verification -import requests, os - class ContentBaseIndexRequest(BaseModel): file: str @@ -75,23 +73,3 @@ def search(self, request: ContentBaseSearchRequest, Authorization: Annotated[str filter=request.filter ) return ContentBaseSearchResponse(response=response) - - -class NexusRESTClient: - token = os.environ.get("NEXUS_AI_TOKEN") - base_url = os.environ.get("NEXUS_AI_URL") - - def __init__(self) -> None: - self.headers = { - 'Authorization': self.token, - 'Content-Type': "application/json" - } - - def index_succedded(self, task_succeded: bool, nexus_task_uuid: str) -> None: - endpoint = f'{self.base_url}/api/v1/content-base-file' - data = { - "status": int(task_succeded), - "task_uuid": nexus_task_uuid, - } - response = requests.patch(url=endpoint, data=data, headers=self.headers) - response.raise_for_status() diff --git a/app/handlers/nexus.py b/app/handlers/nexus.py new file mode 100644 index 0000000..5c378aa --- /dev/null +++ b/app/handlers/nexus.py @@ -0,0 +1,24 @@ + +import os +import json +import requests + + +class NexusRESTClient: + token = os.environ.get("NEXUS_AI_TOKEN") + base_url = os.environ.get("NEXUS_AI_URL") + + def __init__(self) -> None: + self.headers = { + 'Authorization': self.token, + 'Content-Type': "application/json" + } + + def index_succedded(self, task_succeded: bool, nexus_task_uuid: str) -> None: + endpoint = f'{self.base_url}/api/v1/content-base-file' + data = { + "status": int(task_succeded), + "task_uuid": nexus_task_uuid, + } + response = requests.patch(url=endpoint, data=json.dumps(data), headers=self.headers) + response.raise_for_status() From ac87404bee9be8d46f77ac626c0287682546d22f Mon Sep 17 00:00:00 2001 From: Alisson Date: Wed, 27 Dec 2023 18:20:59 -0300 Subject: [PATCH 14/29] add: delete content base file endpoint --- app/handlers/content_bases.py | 19 +++++++++-- app/indexer/content_bases.py | 17 ++++++++-- app/store/elasticsearch_vector_store.py | 44 +++++++++++++++++++++++++ 3 files changed, 76 insertions(+), 4 deletions(-) diff --git a/app/handlers/content_bases.py b/app/handlers/content_bases.py index 434c590..8d33b79 100644 --- a/app/handlers/content_bases.py +++ b/app/handlers/content_bases.py @@ -34,6 +34,13 @@ class ContentBaseSearchResponse(BaseModel): response: List[str] +class ContentBaseDeleteRequest(BaseModel): + filename: str + content_base: str + +class ContentBaseDeleteResponse(BaseModel): + deleted: bool + class ContentBaseHandler(IDocumentHandler): def __init__(self, content_base_indexer: IDocumentIndexer): self.content_base_indexer = content_base_indexer @@ -44,6 +51,9 @@ def __init__(self, content_base_indexer: IDocumentIndexer): self.router.add_api_route( "/content_base/search", endpoint=self.search, methods=["GET"] ) + self.router.add_api_route( + "/content_base/delete", endpoint=self.delete, methods=["DELETE"] + ) def index(self, request: ContentBaseIndexRequest, Authorization: Annotated[str | None, Header()] = None): token_verification(Authorization) @@ -59,8 +69,13 @@ def index(self, request: ContentBaseIndexRequest, Authorization: Annotated[str | def batch_index(self): raise NotImplementedError - def delete(self): - raise NotImplementedError + def delete(self, request: ContentBaseDeleteRequest, Authorization: Annotated[str | None, Header()] = None): + token_verification(Authorization) + self.content_base_indexer.delete( + request.content_base, + request.filename + ) + return ContentBaseDeleteResponse(deleted=True) def delete_batch(self): raise NotImplementedError diff --git a/app/indexer/content_bases.py b/app/indexer/content_bases.py index c479c73..4136723 100644 --- a/app/indexer/content_bases.py +++ b/app/indexer/content_bases.py @@ -40,8 +40,21 @@ def _search_docs_by_content_base_uuid(self, content_base_uuid: UUID): } return self.storage.query_search(search_filter) - def delete(self): - raise NotImplementedError + def delete(self, content_base_uuid: UUID, filename: str): + search_filter = { + "metadata.content_base_uuid": content_base_uuid, + "metadata.source": filename, + } + + scroll_id, results = self.storage.search_delete(search_filter) + ids = [] + + while len(results) > 0: + ids += [item["_id"] for item in results] + scroll_id, results = self.storage.search_delete(search_filter, scroll_id) + + if ids: + self.storage.delete(ids=ids) def delete_batch(self): raise NotImplementedError diff --git a/app/store/elasticsearch_vector_store.py b/app/store/elasticsearch_vector_store.py index 7e3a621..9800143 100644 --- a/app/store/elasticsearch_vector_store.py +++ b/app/store/elasticsearch_vector_store.py @@ -79,6 +79,50 @@ def query_search(self, search_filter: dict) -> list[dict]: hits = [hit for hit in response["hits"]["hits"]] return hits + def search_delete(self, search_filter: dict, scroll_id: str = None) -> tuple[str, dict]: + + if scroll_id: + response = self.vectorstore.client.scroll(scroll_id=scroll_id, scroll='2m') + scroll_id = response["_scroll_id"] + hits = [hit for hit in response["hits"]["hits"]] + return scroll_id, hits + + match_field1: str = list(search_filter.keys())[0] + match_value1: str = search_filter[match_field1] + match_field2 = list(search_filter.keys())[1] + match_value2 = search_filter[match_field2] + + query_script = { + "bool": { + "must": [ + {"match": {match_field1: match_value1}}, + {"match": {match_field2: match_value2}} + ], + } + } + + try: + self.vectorstore.client.indices.get(index=self.vectorstore.index_name) + except Exception as e: + return [] + + source = ["metadata"] + + + response = self.vectorstore.client.search( + index=self.vectorstore.index_name, + query=query_script, + source=source, + scroll="2m", + size=100, + ) + scroll_id = response["_scroll_id"] + hits = [hit for hit in response["hits"]["hits"]] + return scroll_id, hits + def search(self, search: str, filter=None, threshold=0.1) -> list[Document]: docs = self.vectorstore.similarity_search_with_score(query=search, k=5, filter=filter) return [doc[0] for doc in docs if doc[1] > threshold] + + def delete(self, ids: list[str] = []) -> bool: + return self.vectorstore.delete(ids) From 43fe32d8a6e6aedbff65b0ebd86c249ac8403e89 Mon Sep 17 00:00:00 2001 From: Alisson Date: Wed, 10 Jan 2024 17:17:31 -0300 Subject: [PATCH 15/29] add index_file_url --- app/celery.py | 2 +- app/handlers/authorizations.py | 2 +- app/handlers/content_bases.py | 2 +- app/indexer/indexer_file_manager.py | 16 +++++++++++++++- app/loaders/__init__.py | 6 ++++++ 5 files changed, 24 insertions(+), 4 deletions(-) diff --git a/app/celery.py b/app/celery.py index 6e00643..d921760 100644 --- a/app/celery.py +++ b/app/celery.py @@ -28,4 +28,4 @@ def index_file_data(content_base: Dict) -> bool: index_result: bool = manager.index_file(content_base) NexusRESTClient().index_succedded(task_succeded=index_result, nexus_task_uuid=content_base.get("task_uuid")) - return manager.index_file(content_base) + return index_result diff --git a/app/handlers/authorizations.py b/app/handlers/authorizations.py index 9c37447..8b38899 100644 --- a/app/handlers/authorizations.py +++ b/app/handlers/authorizations.py @@ -3,6 +3,6 @@ def token_verification(token: str): - if os.environ.get("NEXUS_AI_TOKEN") == token: + if os.environ.get("SENTENX_TOKEN") == token: return raise HTTPException(status_code=401, detail=[{"msg": str("Unauthorized")}]) \ No newline at end of file diff --git a/app/handlers/content_bases.py b/app/handlers/content_bases.py index 8d33b79..b60c111 100644 --- a/app/handlers/content_bases.py +++ b/app/handlers/content_bases.py @@ -49,7 +49,7 @@ def __init__(self, content_base_indexer: IDocumentIndexer): "/content_base/index", endpoint=self.index, methods=["PUT"] ) self.router.add_api_route( - "/content_base/search", endpoint=self.search, methods=["GET"] + "/content_base/search", endpoint=self.search, methods=["POST"] ) self.router.add_api_route( "/content_base/delete", endpoint=self.delete, methods=["DELETE"] diff --git a/app/indexer/indexer_file_manager.py b/app/indexer/indexer_file_manager.py index b2f53de..353483f 100644 --- a/app/indexer/indexer_file_manager.py +++ b/app/indexer/indexer_file_manager.py @@ -1,4 +1,4 @@ -from app.loaders import load_file_and_get_raw_text +from app.loaders import load_file_and_get_raw_text, load_file_url_and_get_raw_text from app.text_splitters import get_split_text from typing import Dict, List from fastapi.logger import logger @@ -19,6 +19,20 @@ def __init__(self, file_downloader, content_base_indexer) -> None: self.file_downloader = file_downloader self.content_base_indexer = content_base_indexer + def index_file_url(self, content_base): + file_raw_text: str = load_file_url_and_get_raw_text( + content_base.get("file"), content_base.get('extension_file') + ) + metadatas: Dict[str, str] = get_file_metadata(content_base) + texts: List[str] = get_split_text(file_raw_text) + + try: + self.content_base_indexer.index(texts, metadatas) + return True + except Exception as e: # TODO: handle exceptions + logger.exception(e) + return False + def index_file(self, content_base): filename: str = content_base.get("filename") diff --git a/app/loaders/__init__.py b/app/loaders/__init__.py index 0785a91..e4ebc05 100644 --- a/app/loaders/__init__.py +++ b/app/loaders/__init__.py @@ -15,4 +15,10 @@ def load_file_and_get_raw_text(file_name: str, file_type: str): file_path = f'app/files/{file_name}' loader = supported_loaders.get(file_type) data_loader = DataLoader(loader, file_path) + return data_loader.raw_text() + + +def load_file_url_and_get_raw_text(file_url: str, file_type: str): + loader = supported_loaders.get(file_type) + data_loader = DataLoader(loader, file_url) return data_loader.raw_text() \ No newline at end of file From a5db3e84164f20d5ce5733e61df6627fd27e0935 Mon Sep 17 00:00:00 2001 From: Alisson Date: Wed, 10 Jan 2024 17:24:22 -0300 Subject: [PATCH 16/29] add a line at the end of files --- app/handlers/authorizations.py | 2 +- app/loaders/__init__.py | 2 +- 2 files changed, 2 insertions(+), 2 deletions(-) diff --git a/app/handlers/authorizations.py b/app/handlers/authorizations.py index 8b38899..b6e5a8c 100644 --- a/app/handlers/authorizations.py +++ b/app/handlers/authorizations.py @@ -5,4 +5,4 @@ def token_verification(token: str): if os.environ.get("SENTENX_TOKEN") == token: return - raise HTTPException(status_code=401, detail=[{"msg": str("Unauthorized")}]) \ No newline at end of file + raise HTTPException(status_code=401, detail=[{"msg": str("Unauthorized")}]) diff --git a/app/loaders/__init__.py b/app/loaders/__init__.py index e4ebc05..d830e78 100644 --- a/app/loaders/__init__.py +++ b/app/loaders/__init__.py @@ -21,4 +21,4 @@ def load_file_and_get_raw_text(file_name: str, file_type: str): def load_file_url_and_get_raw_text(file_url: str, file_type: str): loader = supported_loaders.get(file_type) data_loader = DataLoader(loader, file_url) - return data_loader.raw_text() \ No newline at end of file + return data_loader.raw_text() From 56b2099eca4e90ac10157ace9543ce187daed465 Mon Sep 17 00:00:00 2001 From: Alisson Date: Fri, 12 Jan 2024 19:41:11 -0300 Subject: [PATCH 17/29] return full page at content base search, add PDFLoader and DataLoaderCls classes --- .coveragerc | 2 + app/celery.py | 7 +- app/indexer/content_bases.py | 5 +- app/indexer/indexer_file_manager.py | 42 +- app/loaders/__init__.py | 29 +- app/loaders/loaders.py | 57 + app/tests/test_document_loader.py | 69 +- app/tests/test_elasticsearch_vector_store.py | 113 +- app/tests/test_text_splitter.py | 33 +- app/text_splitters/__init__.py | 2 +- app/text_splitters/text_splitters.py | 38 +- poetry.lock | 1762 +++++++++--------- pyproject.toml | 7 + 13 files changed, 1295 insertions(+), 871 deletions(-) diff --git a/.coveragerc b/.coveragerc index 4b5d00b..c0228fb 100644 --- a/.coveragerc +++ b/.coveragerc @@ -1,2 +1,4 @@ [report] exclude_lines = pass + pragma: no cover + raise NotImplementedError \ No newline at end of file diff --git a/app/celery.py b/app/celery.py index d921760..a8c8de2 100644 --- a/app/celery.py +++ b/app/celery.py @@ -6,6 +6,8 @@ from app.downloaders.s3 import S3FileDownloader from app.handlers.nexus import NexusRESTClient +from app.text_splitters import TextSplitter, character_text_splitter + celery = Celery(__name__) celery.conf.broker_url = os.environ.get( @@ -24,8 +26,9 @@ def index_file_data(content_base: Dict) -> bool: os.environ.get("AWS_STORAGE_ACCESS_KEY"), os.environ.get("AWS_STORAGE_SECRET_KEY") ) - manager = IndexerFileManager(file_downloader, main_app.content_base_indexer) - index_result: bool = manager.index_file(content_base) + text_splitter = TextSplitter(character_text_splitter()) + manager = IndexerFileManager(file_downloader, main_app.content_base_indexer, text_splitter) + index_result: bool = manager.index_file_url(content_base) NexusRESTClient().index_succedded(task_succeded=index_result, nexus_task_uuid=content_base.get("task_uuid")) return index_result diff --git a/app/indexer/content_bases.py b/app/indexer/content_bases.py index 4136723..5310087 100644 --- a/app/indexer/content_bases.py +++ b/app/indexer/content_bases.py @@ -11,6 +11,9 @@ class ContentBaseIndexer(IDocumentIndexer): def __init__(self, storage: IStorage): self.storage = storage + def index_documents(self, docs: List[Document]): + return self.storage.save(docs) + def index(self, texts: List, metadatas: dict): results = self._search_docs_by_content_base_uuid( content_base_uuid=metadatas.get('content_base_uuid') @@ -32,7 +35,7 @@ def index_batch(self): def search(self, search, filter=None, threshold=0.1) -> list[Product]: matched_responses = self.storage.search(search, filter, threshold) - return [doc.page_content for doc in matched_responses] + return set([doc.metadata.get("full_page") for doc in matched_responses]) def _search_docs_by_content_base_uuid(self, content_base_uuid: UUID): search_filter = { diff --git a/app/indexer/indexer_file_manager.py b/app/indexer/indexer_file_manager.py index 353483f..b4e28b7 100644 --- a/app/indexer/indexer_file_manager.py +++ b/app/indexer/indexer_file_manager.py @@ -1,7 +1,11 @@ -from app.loaders import load_file_and_get_raw_text, load_file_url_and_get_raw_text +from app.loaders import load_file_and_get_raw_text, load_file_url_and_get_raw_text, load_file_url_and_get_pages_text, load_file_url_and_split_text from app.text_splitters import get_split_text from typing import Dict, List from fastapi.logger import logger +from langchain.schema.document import Document +from app.indexer import IDocumentIndexer +from app.downloaders import IFileDownloader +from app.text_splitters import ITextSplitter def get_file_metadata(content_base: Dict) -> Dict[str, str]: @@ -10,16 +14,46 @@ def get_file_metadata(content_base: Dict) -> Dict[str, str]: "content_base_uuid": str(content_base.get('content_base')) } +def add_file_metadata(document_pages: List[Document], content_base: Dict) -> List[Document]: + metadata = { + "content_base_uuid": str(content_base.get('content_base')), + "filename": content_base.get("filename"), + + } + for page in document_pages: + page.metadata.update(metadata) + + return document_pages class IndexerFileManager: """Business rule to index a file""" - def __init__(self, file_downloader, content_base_indexer) -> None: + def __init__(self, + file_downloader: IFileDownloader, + content_base_indexer: IDocumentIndexer, + text_splitter: ITextSplitter + ) -> None: self.file_downloader = file_downloader self.content_base_indexer = content_base_indexer - - def index_file_url(self, content_base): + self.text_splitter = text_splitter + + def index_file_url(self, content_base) -> bool: + docs: List[Document] = load_file_url_and_split_text( + content_base.get("file"), + content_base.get('extension_file'), + self.text_splitter + ) + document_pages: List[Document] = add_file_metadata(docs, content_base) + try: + self.content_base_indexer.index_documents(document_pages) + return True + except Exception as e: # TODO: handle exceptions + logger.exception(e) + return False + + + def index_file_url_raw_text(self, content_base): file_raw_text: str = load_file_url_and_get_raw_text( content_base.get("file"), content_base.get('extension_file') ) diff --git a/app/loaders/__init__.py b/app/loaders/__init__.py index d830e78..220f5de 100644 --- a/app/loaders/__init__.py +++ b/app/loaders/__init__.py @@ -1,6 +1,9 @@ -from app.loaders.loaders import (DataLoader, txt_loader, pdf_loader, docx_loader, xlsx_loader) - +import os +from app.loaders.loaders import (DataLoader, txt_loader, pdf_loader, docx_loader, xlsx_loader, DataLoaderCls, PDFLoader) +from langchain.schema.document import Document +from typing import List +from app.text_splitters import ITextSplitter supported_loaders = { 'txt': txt_loader, 'pdf': pdf_loader, @@ -10,15 +13,31 @@ 'xlsx': xlsx_loader, } +supported_loaders_cls = { + 'pdf': PDFLoader +} + -def load_file_and_get_raw_text(file_name: str, file_type: str): - file_path = f'app/files/{file_name}' +def load_file_and_get_raw_text(file_name: str, file_type: str) -> str: + file_path = f'{os.environ.get("FILE_PATH")}/{file_name}' loader = supported_loaders.get(file_type) data_loader = DataLoader(loader, file_path) return data_loader.raw_text() -def load_file_url_and_get_raw_text(file_url: str, file_type: str): +def load_file_url_and_get_raw_text(file_url: str, file_type: str) -> str: loader = supported_loaders.get(file_type) data_loader = DataLoader(loader, file_url) return data_loader.raw_text() + + +def load_file_url_and_get_pages_text(file_url: str, file_type: str) -> List[Document]: + loader = supported_loaders.get(file_type) + data_loader = DataLoader(loader, file_url) + return data_loader.load() + + +def load_file_url_and_split_text(file_url: str, file_type: str, text_splitter: ITextSplitter) -> List[Document]: + loader = supported_loaders_cls.get(file_type) + data_loader = DataLoaderCls(loader, file_url) + return data_loader.load_and_split_text(text_splitter) \ No newline at end of file diff --git a/app/loaders/loaders.py b/app/loaders/loaders.py index bc53ad8..777c2a9 100644 --- a/app/loaders/loaders.py +++ b/app/loaders/loaders.py @@ -4,6 +4,30 @@ ) from typing import Callable, List from langchain.schema.document import Document +from abc import ABC, abstractmethod +from app.text_splitters import ITextSplitter + + +class DocumentLoader(ABC): + + @abstractmethod + def load(self): + pass + + +class DataLoaderCls: + def __init__(self, loader: DocumentLoader, file: str) -> None: + self.loader = loader(file) + self.file = file + + def load(self) -> List[Document]: + return self.loader.load() + + def load_and_split_text(self, text_splitter: ITextSplitter) -> List[Document]: + return self.loader.load_and_split_text(text_splitter) + + def raw_text(self) -> str: + return self.loader.raw_text() class DataLoader: @@ -29,6 +53,39 @@ def txt_loader(file: str) -> Callable: return loader.load() +class PDFLoader(DocumentLoader): + def __init__(self, file: str) -> None: + self.loader = PyPDFLoader(file) + + def load(self) -> List[Document]: + pages = self.loader.load_and_split() + return pages + + def load_and_split_text(self, text_splitter: ITextSplitter) -> List[Document]: + pages = self.load() + split_pages = [] + + for page in pages: + page_content = page.page_content.lower() + metadatas = page.metadata + metadatas.update({"full_page": page_content}) + + text_chunks = text_splitter.split_text(page_content) + for chunk in text_chunks: + split_pages.append(Document(page_content=chunk, metadata=metadatas)) + + return split_pages + + def raw_text(self) -> str: + pages = self.load() + raw_text = "" + for i, page in enumerate(pages): + text = page.page_content + if text: + raw_text += text.lower() + return raw_text + + def pdf_loader(file: str) -> Callable: loader = PyPDFLoader(file) pages = loader.load_and_split() diff --git a/app/tests/test_document_loader.py b/app/tests/test_document_loader.py index 440da47..1e35151 100644 --- a/app/tests/test_document_loader.py +++ b/app/tests/test_document_loader.py @@ -1,25 +1,41 @@ import unittest from app.loaders.loaders import ( DataLoader, + DataLoaderCls, + PDFLoader, pdf_loader, txt_loader, docx_loader, u_docx_loader, xlsx_loader ) +from unittest import mock +from app.loaders import ( + load_file_url_and_split_text, + load_file_url_and_get_pages_text, + load_file_and_get_raw_text, + load_file_url_and_get_raw_text +) import os import pathlib import shutil import xlsxwriter from docx import Document from reportlab.pdfgen.canvas import Canvas +from app.text_splitters import TextSplitter, character_text_splitter +from typing import List + + +TEST_DIR = pathlib.Path(__file__).parent.resolve() +TEST_FILE_PATH = os.path.join(TEST_DIR, 'test_files') class TestDocumentLoader(unittest.TestCase): - test_dir = pathlib.Path(__file__).parent.resolve() - path = os.path.join(test_dir, 'test_files') + test_dir = TEST_DIR + path = TEST_FILE_PATH text_string = 'Hello, World!' file_name = 'test_file' + text_splitter = TextSplitter(character_text_splitter()) @staticmethod def _create_test_dir(): @@ -104,6 +120,55 @@ def test_load_xlsx(self): raw_text = data_loader.raw_text() self.assertEqual(type(raw_text), str) + def test_pdf_loader_cls(self): + file_path = f'{self.path}/{self.file_name}.pdf' + pdf_loader = PDFLoader(file_path) + split_pages: List[Document] = pdf_loader.load_and_split_text(self.text_splitter) + self.assertEqual(list, type(split_pages)) + + def test_load_file_url_and_split_text(self): + file_path = f'{self.path}/{self.file_name}.pdf' + file_type = "pdf" + docs = load_file_url_and_split_text(file_path, file_type, self.text_splitter) + self.assertEqual(list, type(docs)) + + def test_load_file_url_and_get_pages_text(self): # this function is deprecated + file_path = f'{self.path}/{self.file_name}.pdf' + file_type = "pdf" + docs = load_file_url_and_get_pages_text(file_path ,file_type) + self.assertEqual(list, type(docs)) + + @mock.patch.dict(os.environ, {"FILE_PATH": TEST_FILE_PATH}) + def test_load_file_and_get_raw_text(self): # this function is deprecated + file_type = "pdf" + raw_text = load_file_and_get_raw_text(f"{self.file_name}.{file_type}" ,file_type) + self.assertEqual(str, type(raw_text)) + + def test_file_url_and_get_raw_text(self): # this function is deprecated + file_path = f'{self.path}/{self.file_name}.pdf' + file_type = "pdf" + raw_text = load_file_url_and_get_raw_text(file_path ,file_type) + self.assertEqual(str, type(raw_text)) + + def test_pdf_loader_cls_raw_text(self): + file_path = f'{self.path}/{self.file_name}.pdf' + pdf_loader = PDFLoader(file_path) + raw_text = pdf_loader.raw_text() + self.assertEqual(str, type(raw_text)) + + def test_data_loader_cls(self): + file_path = f'{self.path}/{self.file_name}.pdf' + data_loader = DataLoaderCls(PDFLoader, file_path) + loaded_data: List[Document] = data_loader.load() + self.assertEqual(list, type(loaded_data)) + + def test_data_loader_raw_text(self): + file_path = f'{self.path}/{self.file_name}.pdf' + data_loader = DataLoaderCls(PDFLoader, file_path) + loaded_data: str = data_loader.raw_text() + self.assertEqual(str, type(loaded_data)) + + @classmethod def tearDownClass(cls): if os.path.exists(TestDocumentLoader.path): diff --git a/app/tests/test_elasticsearch_vector_store.py b/app/tests/test_elasticsearch_vector_store.py index da9f9ce..3efb301 100644 --- a/app/tests/test_elasticsearch_vector_store.py +++ b/app/tests/test_elasticsearch_vector_store.py @@ -2,7 +2,7 @@ from langchain.vectorstores import ElasticVectorSearch from langchain.docstore.document import Document -from app.store.elasticsearch_vector_store import ElasticsearchVectorStoreIndex +from app.store.elasticsearch_vector_store import ElasticsearchVectorStoreIndex, ContentBaseElasticsearchVectorStoreIndex from unittest.mock import Mock @@ -84,3 +84,114 @@ def test_query_search_with_exception(self): {"doc_generic_id": "123", "metadata.sku": ["SKU-123"]} ) self.assertEqual(result, []) + + +class ContentBaseElasticsearchVectorStoreIndexTest(unittest.TestCase): + def setUp(self): + self.vectorstore = Mock(spec=ElasticVectorSearch) + self.vectorstore.index_name = "index_test" + self.vectorstore.client = Mock() + self.vectorstore.embeddings = Mock() + self.vectorstore.client.indices = Mock() + self.storage = ContentBaseElasticsearchVectorStoreIndex(self.vectorstore) + self.doc = Document(page_content="test doc", metadata={"full_page": "test document index", "content_base_uuid": "dfff32e7-dce6-40f7-a86e-8f9618887977"}) + def test_save(self): + self.vectorstore.from_documents.return_value = [ + "f40a4707-549e-4847-8f48-19b1987b8149" + ] + doc = Document(page_content="test doc", metadata={ + "full_page": "test document index", + "content_base_uuid": "dfff32e7-dce6-40f7-a86e-8f9618887977"} + ) + result = self.storage.save(doc) + self.vectorstore.from_documents( + [self.doc], self.vectorstore.embeddings, self.vectorstore.index_name + ) + self.assertEqual(result, ["f40a4707-549e-4847-8f48-19b1987b8149"]) + + def test_delete(self): + self.vectorstore.delete.return_value = True + result = self.storage.delete(ids=["dfff32e7-dce6-40f7-a86e-8f9618887977"]) + self.assertEqual(True, result) + + def test_search(self): + self.vectorstore.similarity_search_with_score.return_value = [ + ( + self.doc, + 1.5, + ) + ] + query_filter = {"content_base_uuid": "dfff32e7-dce6-40f7-a86e-8f9618887977"} + results = self.storage.search( + search="test", filter=query_filter + ) + self.vectorstore.similarity_search_with_score.assert_called_once_with( + query="test", k=5, filter=query_filter + ) + self.assertEqual(1, len(results)) + self.assertEqual(results[0].page_content, "test doc") + + def test_query_search(self): + self.vectorstore.client.indices.get.return_value = True + mock_search_hits = [{"_id": "53899082-cf01-41d1-ba9b-320a90670755"}] + self.vectorstore.client.search.return_value = { + "hits": {"hits": mock_search_hits} + } + result = self.storage.query_search( + {"metadata.content_base_uuid": "dfff32e7-dce6-40f7-a86e-8f9618887977"} + ) + self.assertEqual(result, mock_search_hits) + + def test_query_search_with_exception(self): + query_filter = {"content_base_uuid": "dfff32e7-dce6-40f7-a86e-8f9618887977"} + + self.vectorstore.client.indices.get.side_effect = RuntimeError( + "Index Not Found" + ) + result = self.storage.query_search( + query_filter + ) + self.assertEqual(result, []) + + def test_search_delete(self): + search_filter = { + "metadata.content_base_uuid": "dfff32e7-dce6-40f7-a86e-8f9618887977", + "metadata.filename": "filename.pdf" + } + self.vectorstore.client.indices.get.return_value = True + self.vectorstore.client.search.return_value = { + "_scroll_id": "dfff32e7", + "hits": { + "hits": [{"_id": "53899082-cf01-41d1-ba9b-320a90670755"}] + } + } + result = self.storage.search_delete(search_filter) + mock_search_tuple = ('dfff32e7', [{'_id': '53899082-cf01-41d1-ba9b-320a90670755'}]) + self.assertEqual(result, mock_search_tuple) + + def test_search_delete_scroll_id(self): + search_filter = { + "metadata.content_base_uuid": "dfff32e7-dce6-40f7-a86e-8f9618887977", + "metadata.filename": "filename.pdf" + } + self.vectorstore.client.indices.get.return_value = True + self.vectorstore.client.scroll.return_value = { + "_scroll_id": "53899082", + "hits": { + "hits": [{"_id": "43899082-cf01-81d1-ba9b-329a90670755"}] + } + } + result = self.storage.search_delete(search_filter, "dfff32e7") + mock_search_tuple = ('53899082', [{'_id': '43899082-cf01-81d1-ba9b-329a90670755'}]) + self.assertEqual(result, mock_search_tuple) + + def test_search_delete_with_exception(self): + search_filter = { + "metadata.content_base_uuid": "dfff32e7-dce6-40f7-a86e-8f9618887977", + "metadata.filename": "filename.pdf" + } + self.vectorstore.client.indices.get.side_effect = RuntimeError( + "Index Not Found" + ) + result = self.storage.search_delete(search_filter) + self.assertEqual(result, []) \ No newline at end of file diff --git a/app/tests/test_text_splitter.py b/app/tests/test_text_splitter.py index dfd9a8f..412545c 100644 --- a/app/tests/test_text_splitter.py +++ b/app/tests/test_text_splitter.py @@ -1,16 +1,39 @@ import unittest from app.text_splitters.text_splitters import ( - TextSplitter, character_text_splitter + TextSplitter, character_text_splitter, get_split_text ) from lorem_text import lorem +from typing import Callable, List, Dict +from langchain.schema.document import Document class TestProductsHandler(unittest.TestCase): def setUp(self): self.text = lorem.paragraphs(5) - def test_character_text_splitter(self): - splitter = TextSplitter(character_text_splitter, self.text) - chunks = splitter.split_text() + def test_character_text_splitter_split_text(self): + chunk_size=75 + splitter = TextSplitter(character_text_splitter(chunk_size=chunk_size)) + chunks = splitter.split_text(self.text) self.assertEqual(type(chunks), list) - self.assertGreaterEqual(len(chunks), len(chunks)) + [self.assertGreaterEqual(len(chunk), chunk_size) for chunk in chunks] + + def test_character_text_splitter_create_documents(self): + chunk_size=75 + metadatas = [{"text_size": len(self.text)}] + text_list = [self.text] + splitter = TextSplitter(character_text_splitter(chunk_size=chunk_size)) + docs = splitter.create_documents(text_list, metadatas) + self.assertIs(list, type(docs)) + self.assertIs(Document, type(docs[0])) + + def test_character_text_splitter_split_documents(self): + chunk_size=75 + splitter = TextSplitter(character_text_splitter(chunk_size=chunk_size)) + doc = Document(page_content=self.text, metadata={"text_size": len(self.text)}) + docs = splitter.split_documents([doc]) + self.assertIs(list, type(docs)) + + def test_get_split_text(self): + texts: List[str] = get_split_text(self.text) + self.assertIs(list, type(texts)) diff --git a/app/text_splitters/__init__.py b/app/text_splitters/__init__.py index c8a8d11..f3993a3 100644 --- a/app/text_splitters/__init__.py +++ b/app/text_splitters/__init__.py @@ -1 +1 @@ -from app.text_splitters.text_splitters import get_split_text +from app.text_splitters.text_splitters import get_split_text, ITextSplitter, TextSplitter, character_text_splitter diff --git a/app/text_splitters/text_splitters.py b/app/text_splitters/text_splitters.py index f0f3d01..94d78ec 100644 --- a/app/text_splitters/text_splitters.py +++ b/app/text_splitters/text_splitters.py @@ -1,24 +1,40 @@ -from typing import Callable, List +import os +from abc import ABC, abstractmethod + +from typing import Callable, List, Dict +from langchain.schema.document import Document from langchain.text_splitter import CharacterTextSplitter from app.util import count_words -import os DEFAULT_CHUNK_SIZE = os.environ.get("DEFAULT_CHUNK_SIZE", 75) DEFAULT_CHUNK_OVERLAP = os.environ.get("DEFAULT_CHUNK_OVERLAP", 75) DEFAULT_SEPARATOR = os.environ.get("DEFAULT_SEPARATOR", "\n") -class TextSplitter: - def __init__(self, text_splitter: Callable, content: str) -> None: +class ITextSplitter(ABC): #pragma: no cover + + @abstractmethod + def split_text(self): + raise NotImplementedError + + @abstractmethod + def create_documents(self): + raise NotImplementedError + + +class TextSplitter(ITextSplitter): + def __init__(self, text_splitter: Callable) -> None: self.text_splitter = text_splitter - self.content = content - def split_text(self) -> Callable: - pages = self.text_splitter.split_text(self.content) + def split_text(self, content) -> List[str]: + pages = self.text_splitter.split_text(content) return pages - def create_documents(self, metadatas: dict): - return self.text_splitter.create_documents(self.content, metadatas=metadatas) + def create_documents(self, content: List[str], metadatas: List[Dict]) -> List[Document]: + return self.text_splitter.create_documents(content, metadatas=metadatas) + + def split_documents(self, content: Document): + return self.text_splitter.split_documents(content) def character_text_splitter( @@ -37,6 +53,6 @@ def character_text_splitter( def get_split_text(raw_data: str): - text_splitter = TextSplitter(character_text_splitter(), raw_data) - texts = text_splitter.split_text() + text_splitter = TextSplitter(character_text_splitter()) + texts = text_splitter.split_text(raw_data) return texts \ No newline at end of file diff --git a/poetry.lock b/poetry.lock index dcb0a77..747a8de 100644 --- a/poetry.lock +++ b/poetry.lock @@ -169,21 +169,22 @@ files = [ [[package]] name = "attrs" -version = "23.1.0" +version = "23.2.0" description = "Classes Without Boilerplate" optional = false python-versions = ">=3.7" files = [ - {file = "attrs-23.1.0-py3-none-any.whl", hash = "sha256:1f28b4522cdc2fb4256ac1a020c78acf9cba2c6b461ccd2c126f3aa8e8335d04"}, - {file = "attrs-23.1.0.tar.gz", hash = "sha256:6279836d581513a26f1bf235f9acd333bc9115683f14f7e8fae46c98fc50e015"}, + 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"f8d8c0c240311fcb449d2f2b86f21dec403402589d53549276b560ab51578a80" diff --git a/pyproject.toml b/pyproject.toml index 9124484..500cb4e 100644 --- a/pyproject.toml +++ b/pyproject.toml @@ -34,7 +34,14 @@ reportlab = "^4.0.7" xlsxwriter = "^3.1.9" flake8 = "^6.1.0" lorem-text = "^2.1" +taskipy = "^1.12.2" [build-system] requires = ["poetry-core"] build-backend = "poetry.core.masonry.api" + + +[tool.taskipy.tasks] +test = 'poetry run coverage run -m unittest discover ./app/tests/' +post_test = 'coverage html' +run = 'uvicorn app.main:main_app.api --reload' \ No newline at end of file From 8bdbf8e21feb304ad1a7c8ff27a5e3a39145ea6b Mon Sep 17 00:00:00 2001 From: Alisson Date: Thu, 18 Jan 2024 11:58:55 -0300 Subject: [PATCH 18/29] add txt and docx class loaders --- app/loaders/__init__.py | 7 ++++-- app/loaders/loaders.py | 41 +++++++++++++++++++++++++++++++ app/tests/test_document_loader.py | 14 +++++++++++ 3 files changed, 60 insertions(+), 2 deletions(-) diff --git a/app/loaders/__init__.py b/app/loaders/__init__.py index 220f5de..42d750b 100644 --- a/app/loaders/__init__.py +++ b/app/loaders/__init__.py @@ -1,6 +1,6 @@ import os -from app.loaders.loaders import (DataLoader, txt_loader, pdf_loader, docx_loader, xlsx_loader, DataLoaderCls, PDFLoader) +from app.loaders.loaders import (DataLoader, txt_loader, pdf_loader, docx_loader, xlsx_loader, DataLoaderCls, PDFLoader, DocxLoader, TxtLoader) from langchain.schema.document import Document from typing import List from app.text_splitters import ITextSplitter @@ -14,7 +14,10 @@ } supported_loaders_cls = { - 'pdf': PDFLoader + 'pdf': PDFLoader, + 'doc': DocxLoader, + 'docx': DocxLoader, + 'txt': TxtLoader, } diff --git a/app/loaders/loaders.py b/app/loaders/loaders.py index 777c2a9..a40c887 100644 --- a/app/loaders/loaders.py +++ b/app/loaders/loaders.py @@ -52,6 +52,26 @@ def txt_loader(file: str) -> Callable: loader = TextLoader(file) return loader.load() +class TxtLoader(DocumentLoader): + def __init__(self, file:str) -> None: + self.loader = TextLoader(file) + + def load(self) -> List[Document]: + return self.loader.load_and_split() + + def load_and_split_text(self, text_splitter: ITextSplitter) -> List[Document]: + pages = self.load() + split_pages = [] + for page in pages: + page_content = page.page_content.lower() + metadatas = page.metadata + metadatas.update({"full_page": page_content}) + + text_chunks = text_splitter.split_text(page_content) + for chunk in text_chunks: + split_pages.append(Document(page_content=chunk, metadata=metadatas)) + return split_pages + class PDFLoader(DocumentLoader): def __init__(self, file: str) -> None: @@ -92,6 +112,27 @@ def pdf_loader(file: str) -> Callable: return pages +class DocxLoader(DocumentLoader): + def __init__(self, file:str) -> None: + self.loader = UnstructuredWordDocumentLoader(file) + + def load(self) -> List[Document]: + return self.loader.load_and_split() + + def load_and_split_text(self, text_splitter: ITextSplitter) -> List[Document]: + pages = self.load() + split_pages = [] + for page in pages: + page_content = page.page_content.lower() + metadatas = page.metadata + metadatas.update({"full_page": page_content}) + + text_chunks = text_splitter.split_text(page_content) + for chunk in text_chunks: + split_pages.append(Document(page_content=chunk, metadata=metadatas)) + return split_pages + + def docx_loader(file: str) -> Callable: loader = Docx2txtLoader(file) return loader.load() diff --git a/app/tests/test_document_loader.py b/app/tests/test_document_loader.py index 1e35151..bc6a96d 100644 --- a/app/tests/test_document_loader.py +++ b/app/tests/test_document_loader.py @@ -3,6 +3,8 @@ DataLoader, DataLoaderCls, PDFLoader, + DocxLoader, + TxtLoader, pdf_loader, txt_loader, docx_loader, @@ -126,6 +128,18 @@ def test_pdf_loader_cls(self): split_pages: List[Document] = pdf_loader.load_and_split_text(self.text_splitter) self.assertEqual(list, type(split_pages)) + def test_docx_loader_cls(self): + file_path = f'{self.path}/{self.file_name}.docx' + docx_loader = DocxLoader(file_path) + split_pages: List[Document] = docx_loader.load_and_split_text(self.text_splitter) + self.assertEqual(list, type(split_pages)) + + def test_txt_loader_cls(self): + file_path = f'{self.path}/{self.file_name}.txt' + docx_loader = TxtLoader(file_path) + split_pages: List[Document] = docx_loader.load_and_split_text(self.text_splitter) + self.assertEqual(list, type(split_pages)) + def test_load_file_url_and_split_text(self): file_path = f'{self.path}/{self.file_name}.pdf' file_type = "pdf" From 288d17606ba4cbacc1689f8a989e045055b679ab Mon Sep 17 00:00:00 2001 From: Alisson Date: Fri, 19 Jan 2024 18:14:46 -0300 Subject: [PATCH 19/29] ajust txt loader to save file temp --- app/loaders/loaders.py | 22 +++++++++++++++++++--- 1 file changed, 19 insertions(+), 3 deletions(-) diff --git a/app/loaders/loaders.py b/app/loaders/loaders.py index a40c887..7ad578e 100644 --- a/app/loaders/loaders.py +++ b/app/loaders/loaders.py @@ -1,10 +1,14 @@ +import os +import uuid +import requests +from abc import ABC, abstractmethod + from langchain.document_loaders import ( TextLoader, PyPDFLoader, UnstructuredExcelLoader, UnstructuredWordDocumentLoader, Docx2txtLoader ) -from typing import Callable, List from langchain.schema.document import Document -from abc import ABC, abstractmethod +from typing import Callable, List from app.text_splitters import ITextSplitter @@ -53,8 +57,20 @@ def txt_loader(file: str) -> Callable: return loader.load() class TxtLoader(DocumentLoader): + def _get_file(self, file: str): + if os.environ.get("AWS_STORAGE_BUCKET_NAME") in file: + response = requests.get(file) + if response.status_code == 200: + file_path = f"/tmp/{uuid.uuid4()}.txt" + text = response.text + with open(file_path, "w") as file: + file.write(text) + return file_path + return file + def __init__(self, file:str) -> None: - self.loader = TextLoader(file) + self.file = self._get_file(file) + self.loader = TextLoader(self.file) def load(self) -> List[Document]: return self.loader.load_and_split() From 2a24bc71192eeb6cabd35371f286f3a62502e35d Mon Sep 17 00:00:00 2001 From: Alisson Date: Mon, 22 Jan 2024 16:09:35 -0300 Subject: [PATCH 20/29] send file type in the request --- app/celery.py | 6 +++++- app/handlers/nexus.py | 3 ++- 2 files changed, 7 insertions(+), 2 deletions(-) diff --git a/app/celery.py b/app/celery.py index a8c8de2..5766982 100644 --- a/app/celery.py +++ b/app/celery.py @@ -29,6 +29,10 @@ def index_file_data(content_base: Dict) -> bool: text_splitter = TextSplitter(character_text_splitter()) manager = IndexerFileManager(file_downloader, main_app.content_base_indexer, text_splitter) index_result: bool = manager.index_file_url(content_base) - NexusRESTClient().index_succedded(task_succeded=index_result, nexus_task_uuid=content_base.get("task_uuid")) + NexusRESTClient().index_succedded( + task_succeded=index_result, + nexus_task_uuid=content_base.get("task_uuid"), + file_type=content_base.get("extension_file") + ) return index_result diff --git a/app/handlers/nexus.py b/app/handlers/nexus.py index 5c378aa..34ea2f7 100644 --- a/app/handlers/nexus.py +++ b/app/handlers/nexus.py @@ -14,11 +14,12 @@ def __init__(self) -> None: 'Content-Type': "application/json" } - def index_succedded(self, task_succeded: bool, nexus_task_uuid: str) -> None: + def index_succedded(self, task_succeded: bool, nexus_task_uuid: str, file_type: str) -> None: endpoint = f'{self.base_url}/api/v1/content-base-file' data = { "status": int(task_succeded), "task_uuid": nexus_task_uuid, + "file_type": file_type, } response = requests.patch(url=endpoint, data=json.dumps(data), headers=self.headers) response.raise_for_status() From 4b019c5b67591232d20dee5481dd8f25f7c61b5c Mon Sep 17 00:00:00 2001 From: Alisson Date: Mon, 22 Jan 2024 16:38:26 -0300 Subject: [PATCH 21/29] send text of file in file_type --- app/handlers/nexus.py | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/app/handlers/nexus.py b/app/handlers/nexus.py index 34ea2f7..1ea94d8 100644 --- a/app/handlers/nexus.py +++ b/app/handlers/nexus.py @@ -19,7 +19,7 @@ def index_succedded(self, task_succeded: bool, nexus_task_uuid: str, file_type: data = { "status": int(task_succeded), "task_uuid": nexus_task_uuid, - "file_type": file_type, + "file_type": "text" if file_type == "txt" else "file", } response = requests.patch(url=endpoint, data=json.dumps(data), headers=self.headers) response.raise_for_status() From b4953aef256e7b23157c15be9647198bfa926a74 Mon Sep 17 00:00:00 2001 From: Alisson Date: Thu, 25 Jan 2024 11:15:03 -0300 Subject: [PATCH 22/29] fix INDEX_CONTENTBASES_NAME env var --- app/config.py | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/app/config.py b/app/config.py index 09b94e3..9f77593 100644 --- a/app/config.py +++ b/app/config.py @@ -39,5 +39,5 @@ def __init__(self): } self.content_base_index_name = os.environ.get( - "INDEX_PRODUCTS_NAME", "content_bases" + "INDEX_CONTENTBASES_NAME", "content_bases" ) From adc476b89e2d71cca3514ecf0101b87940c21049 Mon Sep 17 00:00:00 2001 From: Alisson Date: Mon, 29 Jan 2024 16:01:11 -0300 Subject: [PATCH 23/29] add file_uuid to metadata --- app/handlers/content_bases.py | 1 + app/indexer/indexer_file_manager.py | 1 + 2 files changed, 2 insertions(+) diff --git a/app/handlers/content_bases.py b/app/handlers/content_bases.py index b60c111..a7cb999 100644 --- a/app/handlers/content_bases.py +++ b/app/handlers/content_bases.py @@ -13,6 +13,7 @@ class ContentBaseIndexRequest(BaseModel): file: str filename: str + file_uuid: str extension_file: str task_uuid: str content_base: str diff --git a/app/indexer/indexer_file_manager.py b/app/indexer/indexer_file_manager.py index b4e28b7..c5f093c 100644 --- a/app/indexer/indexer_file_manager.py +++ b/app/indexer/indexer_file_manager.py @@ -18,6 +18,7 @@ def add_file_metadata(document_pages: List[Document], content_base: Dict) -> Lis metadata = { "content_base_uuid": str(content_base.get('content_base')), "filename": content_base.get("filename"), + "file_uuid": content_base.get("file_uuid") } for page in document_pages: From 5f7cc9cbb38e368ee74e3e63330d78deb0cf79a7 Mon Sep 17 00:00:00 2001 From: Alisson Date: Mon, 29 Jan 2024 16:16:28 -0300 Subject: [PATCH 24/29] update elasticsearch vectors, search by file_uuid --- app/indexer/content_bases.py | 16 +++++++++++++++- 1 file changed, 15 insertions(+), 1 deletion(-) diff --git a/app/indexer/content_bases.py b/app/indexer/content_bases.py index 5310087..e5d6f1f 100644 --- a/app/indexer/content_bases.py +++ b/app/indexer/content_bases.py @@ -12,6 +12,18 @@ def __init__(self, storage: IStorage): self.storage = storage def index_documents(self, docs: List[Document]): + file_uuid = docs[0].metadata["file_uuid"] + content_base_uuid = docs[0].metadata["content_base_uuid"] + + results = self._search_docs_by_content_base_uuid( + content_base_uuid=content_base_uuid, + file_uuid=file_uuid, + ) + ids = [] + if len(results) > 0: + ids = [item["_id"] for item in results] + self.storage.delete(ids=ids) + return self.storage.save(docs) def index(self, texts: List, metadatas: dict): @@ -37,10 +49,12 @@ def search(self, search, filter=None, threshold=0.1) -> list[Product]: matched_responses = self.storage.search(search, filter, threshold) return set([doc.metadata.get("full_page") for doc in matched_responses]) - def _search_docs_by_content_base_uuid(self, content_base_uuid: UUID): + def _search_docs_by_content_base_uuid(self, content_base_uuid: UUID, file_uuid: str = None): search_filter = { "metadata.content_base_uuid": content_base_uuid } + if file_uuid: + search_filter.update({"metadata.file_uuid": file_uuid}) return self.storage.query_search(search_filter) def delete(self, content_base_uuid: UUID, filename: str): From 6d3ab6462115c6e12f8b725bc13e7074528c7bb7 Mon Sep 17 00:00:00 2001 From: Alisson Date: Mon, 29 Jan 2024 17:54:54 -0300 Subject: [PATCH 25/29] delete file by uuid --- app/handlers/content_bases.py | 6 +++++- app/indexer/content_bases.py | 7 +++++-- 2 files changed, 10 insertions(+), 3 deletions(-) diff --git a/app/handlers/content_bases.py b/app/handlers/content_bases.py index a7cb999..f9f021c 100644 --- a/app/handlers/content_bases.py +++ b/app/handlers/content_bases.py @@ -38,10 +38,13 @@ class ContentBaseSearchResponse(BaseModel): class ContentBaseDeleteRequest(BaseModel): filename: str content_base: str + file_uuid: str + class ContentBaseDeleteResponse(BaseModel): deleted: bool + class ContentBaseHandler(IDocumentHandler): def __init__(self, content_base_indexer: IDocumentIndexer): self.content_base_indexer = content_base_indexer @@ -74,7 +77,8 @@ def delete(self, request: ContentBaseDeleteRequest, Authorization: Annotated[str token_verification(Authorization) self.content_base_indexer.delete( request.content_base, - request.filename + request.filename, + request.file_uuid, ) return ContentBaseDeleteResponse(deleted=True) diff --git a/app/indexer/content_bases.py b/app/indexer/content_bases.py index e5d6f1f..c14f7bf 100644 --- a/app/indexer/content_bases.py +++ b/app/indexer/content_bases.py @@ -57,12 +57,15 @@ def _search_docs_by_content_base_uuid(self, content_base_uuid: UUID, file_uuid: search_filter.update({"metadata.file_uuid": file_uuid}) return self.storage.query_search(search_filter) - def delete(self, content_base_uuid: UUID, filename: str): + def delete(self, content_base_uuid: UUID, filename: str, file_uuid: str): search_filter = { "metadata.content_base_uuid": content_base_uuid, - "metadata.source": filename, + "metadata.file_uuid": file_uuid, } + if filename: + search_filter.update({"metadata.source": filename}) + scroll_id, results = self.storage.search_delete(search_filter) ids = [] From 257cdf571dfc93dacc45bb0b64a650d845a0f519 Mon Sep 17 00:00:00 2001 From: Alisson Date: Tue, 30 Jan 2024 14:21:13 -0300 Subject: [PATCH 26/29] index as environment variable --- app/store/elasticsearch_vector_store.py | 6 ++++-- 1 file changed, 4 insertions(+), 2 deletions(-) diff --git a/app/store/elasticsearch_vector_store.py b/app/store/elasticsearch_vector_store.py index 9800143..95124f9 100644 --- a/app/store/elasticsearch_vector_store.py +++ b/app/store/elasticsearch_vector_store.py @@ -1,8 +1,9 @@ +import os + from langchain.vectorstores import VectorStore from langchain.docstore.document import Document from app.store import IStorage - from fastapi.logger import logger class ElasticsearchVectorStoreIndex(IStorage): def __init__(self, vectorstore: VectorStore, score=1.55): @@ -55,7 +56,8 @@ def delete(self, ids: list[str] = []) -> bool: class ContentBaseElasticsearchVectorStoreIndex(ElasticsearchVectorStoreIndex): def save(self, docs: list[Document])-> list[str]: - res = self.vectorstore.from_documents(docs, self.vectorstore.embeddings, index_name="content_bases") + index = os.environ.get("INDEX_CONTENTBASES_NAME", "content_bases") + res = self.vectorstore.from_documents(docs, self.vectorstore.embeddings, index_name=index) return res def query_search(self, search_filter: dict) -> list[dict]: From f980c535239675813c9c9752a9b512c9ca744fbc Mon Sep 17 00:00:00 2001 From: Alisson Date: Tue, 30 Jan 2024 15:40:51 -0300 Subject: [PATCH 27/29] change docx loader --- app/loaders/loaders.py | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/app/loaders/loaders.py b/app/loaders/loaders.py index 7ad578e..0c6e530 100644 --- a/app/loaders/loaders.py +++ b/app/loaders/loaders.py @@ -130,7 +130,7 @@ def pdf_loader(file: str) -> Callable: class DocxLoader(DocumentLoader): def __init__(self, file:str) -> None: - self.loader = UnstructuredWordDocumentLoader(file) + self.loader = Docx2txtLoader(file) def load(self) -> List[Document]: return self.loader.load_and_split() From 66831572870075386c62eb266c480b5a5847cadb Mon Sep 17 00:00:00 2001 From: Alisson Date: Tue, 30 Jan 2024 18:51:32 -0300 Subject: [PATCH 28/29] add: xlsx and xls support --- app/loaders/__init__.py | 4 +++- app/loaders/loaders.py | 20 ++++++++++++++++++++ 2 files changed, 23 insertions(+), 1 deletion(-) diff --git a/app/loaders/__init__.py b/app/loaders/__init__.py index 42d750b..a119461 100644 --- a/app/loaders/__init__.py +++ b/app/loaders/__init__.py @@ -1,6 +1,6 @@ import os -from app.loaders.loaders import (DataLoader, txt_loader, pdf_loader, docx_loader, xlsx_loader, DataLoaderCls, PDFLoader, DocxLoader, TxtLoader) +from app.loaders.loaders import (DataLoader, txt_loader, pdf_loader, docx_loader, xlsx_loader, DataLoaderCls, PDFLoader, DocxLoader, TxtLoader, XlsxLoader) from langchain.schema.document import Document from typing import List from app.text_splitters import ITextSplitter @@ -18,6 +18,8 @@ 'doc': DocxLoader, 'docx': DocxLoader, 'txt': TxtLoader, + 'xlsx': XlsxLoader, + 'xls': XlsxLoader, } diff --git a/app/loaders/loaders.py b/app/loaders/loaders.py index 0c6e530..10dc853 100644 --- a/app/loaders/loaders.py +++ b/app/loaders/loaders.py @@ -164,3 +164,23 @@ def xlsx_loader(file: str) -> Callable: """Loads .xlsx and .xls files""" loader = UnstructuredExcelLoader(file, mode="elements") return loader.load() + +class XlsxLoader(DocumentLoader): + def __init__(self, file:str) -> None: + self.loader = UnstructuredExcelLoader(file, mode="single") + + def load(self) -> List[Document]: + return self.loader.load_and_split() + + def load_and_split_text(self, text_splitter: ITextSplitter) -> List[Document]: + pages = self.load() + split_pages = [] + for page in pages: + page_content = page.page_content.lower() + metadatas = page.metadata + metadatas.update({"full_page": page_content}) + + text_chunks = text_splitter.split_text(page_content) + for chunk in text_chunks: + split_pages.append(Document(page_content=chunk, metadata=metadatas)) + return split_pages From b575f23cda666713c64875b4a2c3e80c09ab3c6c Mon Sep 17 00:00:00 2001 From: Alisson Date: Tue, 30 Jan 2024 19:20:44 -0300 Subject: [PATCH 29/29] xlsx: save temp file --- app/loaders/loaders.py | 12 +++++++++++- 1 file changed, 11 insertions(+), 1 deletion(-) diff --git a/app/loaders/loaders.py b/app/loaders/loaders.py index 10dc853..bffe77a 100644 --- a/app/loaders/loaders.py +++ b/app/loaders/loaders.py @@ -165,9 +165,19 @@ def xlsx_loader(file: str) -> Callable: loader = UnstructuredExcelLoader(file, mode="elements") return loader.load() +from urllib.request import urlretrieve +from urllib.parse import urlparse class XlsxLoader(DocumentLoader): def __init__(self, file:str) -> None: - self.loader = UnstructuredExcelLoader(file, mode="single") + tmp_file, _ = self._get_temp_file(file) + self.loader = UnstructuredExcelLoader(tmp_file, mode="single") + + def _get_temp_file(self, file_url: str): + result = urlparse(file_url) + filename = result.path.strip("/") + file_path, message = urlretrieve(file_url, f"/tmp/{filename}") + return file_path, message + def load(self) -> List[Document]: return self.loader.load_and_split()