comment out GitHub Actions to focus on fastANI failure #6
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name: build-on-push-to-master | |
on: | |
push: | |
branches: master | |
# To be able to trigger a manual build | |
workflow_dispatch: | |
jobs: | |
build: | |
runs-on: macos-latest | |
env: | |
GITHUB_PAT: ${{ secrets.GITHUB_TOKEN }} | |
steps: | |
- name: Checkout Repo | |
uses: actions/checkout@v4 | |
- name: Install Python | |
uses: actions/setup-python@v5 | |
with: | |
python-version: "3.11" | |
- name: Install Miniconda | |
uses: conda-incubator/setup-miniconda@v3 | |
with: | |
auto-update-conda: true | |
python-version: "3.11" | |
activate-environment: pyani-github | |
channels: defaults,bioconda,conda-forge | |
channel-priority: flexible | |
- name: Install pip | |
run: python -m pip install --upgrade pip | |
# - name: Install Development Requirements | |
# run: conda install --file requirements-dev.txt -y | |
# - name: Install Requirements | |
# run: conda install --file requirements.txt -y | |
# - name: Install third-party tools | |
# run: conda install --file requirements-thirdparty.txt -y | |
- name: Install FastANI | |
run: conda install --file requirements-fastani.txt -y | |
- name: Install PyQT | |
run: conda install --file requirements-pyqt-conda.txt -y | |
- name: Install pip requirements | |
run: pip install -r requirements-pip.txt | |
- name: Install pyani | |
run: pip install -e . | |
# - name: Run Fast Tests with pytest | |
# run: python -m pytest -v -m "not slow" --cov=pyani --cov-report xml:.coverage_fast.xml | |
# - name: Upload pytest Results | |
# uses: actions/upload-artifact@v4 | |
# with: | |
# name: pytest-results-3.11 | |
# path: /pyani/test-results-3.11.xml | |
# retention-days: 1 | |
# if: ${{ always() }} | |