Merge pull request #439 from peterjc/sim_errors_diagonal

Default diagonal for sim-errors should be zero
widdowquinn · Oct 16, 2024 · d224ced · d224ced
2 parents c5539a4 + ea00f32
commit d224ced
Showing 1 changed file with 1 addition and 1 deletion.
diff --git a/pyani/pyani_orm.py b/pyani/pyani_orm.py
@@ -635,7 +635,7 @@ def update_comparison_matrices(session, run) -> None:
     # Set appropriate diagonals for each matrix
     np.fill_diagonal(df_identity.values, 1.0)
     np.fill_diagonal(df_coverage.values, 1.0)
-    np.fill_diagonal(df_simerrors.values, 1.0)
+    np.fill_diagonal(df_simerrors.values, 0.0)
     np.fill_diagonal(df_hadamard.values, 1.0)
     for genome in run.genomes.all():
         df_alnlength.loc[genome.genome_id, genome.genome_id] = genome.length