From 5ae3a11f0618037a5d91e4d9940936720901b777 Mon Sep 17 00:00:00 2001
From: jfi22496 <conor.wild@sky.com>
Date: Fri, 25 Aug 2023 17:02:15 +0100
Subject: [PATCH] Added some testing

---
 xchemalign/aligner.py | 3 ++-
 1 file changed, 2 insertions(+), 1 deletion(-)

diff --git a/xchemalign/aligner.py b/xchemalign/aligner.py
index 411f387..1227325 100644
--- a/xchemalign/aligner.py
+++ b/xchemalign/aligner.py
@@ -599,7 +599,8 @@ def _perform_alignments(self, meta):
 
         new_meta[Constants.META_TRANSFORMS] = {}
         print(new_meta[Constants.META_REFERENCE_ALIGNMENTS])
-        raise Exception
+        if len(fs_model.reference_alignments) > 1:
+            raise Exception
 
         ## Get the observation to conformer site transforms
         ligand_neighbourhood_transforms = read_yaml(fs_model.ligand_neighbourhood_transforms)