From aec6602dc2c59f891e141dd08b6778a601b11199 Mon Sep 17 00:00:00 2001 From: jfi22496 Date: Tue, 15 Aug 2023 17:27:24 +0100 Subject: [PATCH] Debuging collator --- xchemalign/aligner.py | 4 ++-- 1 file changed, 2 insertions(+), 2 deletions(-) diff --git a/xchemalign/aligner.py b/xchemalign/aligner.py index 453cb13..256e3bc 100644 --- a/xchemalign/aligner.py +++ b/xchemalign/aligner.py @@ -166,11 +166,11 @@ def __init__(self, version_dir, metadata, xtalforms, assemblies, logger=None): self.xtal_dir = self.version_dir / Constants.META_XTAL_FILES # e.g. path/to/upload_1/crystallographic_files self.metadata_file = self.version_dir / metadata # e.g. path/to/upload_1/meta_collator.yaml if xtalforms: - self.xtalforms_file = xtalforms + self.xtalforms_file = Path(xtalforms) else: self.xtalforms_file = self.base_dir / Constants.XTALFORMS_FILENAME # e.g. path/to/xtalforms.yaml if assemblies: - self.assemblies_file = assemblies + self.assemblies_file = Path(assemblies) else: self.assemblies_file = self.base_dir / Constants.ASSEMBLIES_FILENAME # e.g. path/to/assemblies.yaml if logger: