Bump conda-incubator/setup-miniconda from 2.3.0 to 3.0.1 #1587
Conversation
This file contains bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters
![dependabot[bot]](https://avatars.githubusercontent.com/in/29110?s=60&v=4){kind=small}
Bumps [conda-incubator/setup-miniconda](https://github.com/conda-incubator/setup-miniconda) from 2.3.0 to 3.0.1. - [Release notes](https://github.com/conda-incubator/setup-miniconda/releases) - [Changelog](https://github.com/conda-incubator/setup-miniconda/blob/main/CHANGELOG.md) - [Commits](conda-incubator/setup-miniconda@v2.3.0...v3.0.1) --- updated-dependencies: - dependency-name: conda-incubator/setup-miniconda dependency-type: direct:production update-type: version-update:semver-major ... Signed-off-by: dependabot[bot] <support@github.com>
dependabot
bot
added
dependencies
github-actions
bot
added
the
needs release notes
joshmoore
deleted the
dependabot/github_actions/conda-incubator/setup-miniconda-3.0.1
branch
jhamman
pushed a commit
to jhamman/zarr-python
that referenced
this pull request
Jan 24, 2024
…pers#1587) Bumps [conda-incubator/setup-miniconda](https://github.com/conda-incubator/setup-miniconda) from 2.3.0 to 3.0.1. - [Release notes](https://github.com/conda-incubator/setup-miniconda/releases) - [Changelog](https://github.com/conda-incubator/setup-miniconda/blob/main/CHANGELOG.md) - [Commits](conda-incubator/setup-miniconda@v2.3.0...v3.0.1) --- updated-dependencies: - dependency-name: conda-incubator/setup-miniconda dependency-type: direct:production update-type: version-update:semver-major ... Signed-off-by: dependabot[bot] <support@github.com> Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com>
jhamman
added a commit
that referenced
this pull request
Oct 11, 2024
* Bump pypa/gh-action-pypi-publish from 1.8.10 to 1.8.11 (#1586)
Bumps [pypa/gh-action-pypi-publish](https://github.com/pypa/gh-action-pypi-publish) from 1.8.10 to 1.8.11.
- [Release notes](https://github.com/pypa/gh-action-pypi-publish/releases)
- [Commits](https://github.com/pypa/gh-action-pypi-publish/compare/v1.8.10...v1.8.11)
---
updated-dependencies:
- dependency-name: pypa/gh-action-pypi-publish
dependency-type: direct:production
update-type: version-update:semver-patch
...
Signed-off-by: dependabot[bot] <support@github.com>
Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com>
* Bump conda-incubator/setup-miniconda from 2.3.0 to 3.0.1 (#1587)
Bumps [conda-incubator/setup-miniconda](https://github.com/conda-incubator/setup-miniconda) from 2.3.0 to 3.0.1.
- [Release notes](https://github.com/conda-incubator/setup-miniconda/releases)
- [Changelog](https://github.com/conda-incubator/setup-miniconda/blob/main/CHANGELOG.md)
- [Commits](https://github.com/conda-incubator/setup-miniconda/compare/v2.3.0...v3.0.1)
---
updated-dependencies:
- dependency-name: conda-incubator/setup-miniconda
dependency-type: direct:production
update-type: version-update:semver-major
...
Signed-off-by: dependabot[bot] <support@github.com>
Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com>
* * Cache result of FSStore._fsspec_installed (#1581)
Prevent runtime-overhead in doing this check multiple times
* Bump version of black in pre-commit (#1559)
* Use list comprehension where applicable (#1555)
Even if this is only a test, list comprehensions are faster than
repeatedly call append().
Also use tuple instead of list when possible.
Co-authored-by: Davis Bennett <davis.v.bennett@gmail.com>
* Bump numcodecs from 0.11.0 to 0.12.1 (#1580)
Bumps [numcodecs](https://github.com/zarr-developers/numcodecs) from 0.11.0 to 0.12.1.
- [Release notes](https://github.com/zarr-developers/numcodecs/releases)
- [Changelog](https://github.com/zarr-developers/numcodecs/blob/main/docs/release.rst)
- [Commits](https://github.com/zarr-developers/numcodecs/compare/v0.11.0...v0.12.1)
---
updated-dependencies:
- dependency-name: numcodecs
dependency-type: direct:development
update-type: version-update:semver-minor
...
Signed-off-by: dependabot[bot] <support@github.com>
Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com>
Co-authored-by: Joe Hamman <joe@earthmover.io>
* Use format specification mini-language to format string (#1558)
Co-authored-by: Joe Hamman <joe@earthmover.io>
* Single startswith() call instead of multiple ones (#1556)
It's faster and probably more readable.
Co-authored-by: Davis Bennett <davis.v.bennett@gmail.com>
Co-authored-by: Joe Hamman <joe@earthmover.io>
* Bump pymongo from 4.5.0 to 4.6.1 (#1585)
Bumps [pymongo](https://github.com/mongodb/mongo-python-driver) from 4.5.0 to 4.6.1.
- [Release notes](https://github.com/mongodb/mongo-python-driver/releases)
- [Changelog](https://github.com/mongodb/mongo-python-driver/blob/master/doc/changelog.rst)
- [Commits](https://github.com/mongodb/mongo-python-driver/compare/4.5.0...4.6.1)
---
updated-dependencies:
- dependency-name: pymongo
dependency-type: direct:development
update-type: version-update:semver-minor
...
Signed-off-by: dependabot[bot] <support@github.com>
Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com>
Co-authored-by: Joe Hamman <joe@earthmover.io>
* Move codespell options around (#1196)
Starting with codespell 2.2.2, options can be specified in
`pyrpoject.toml` in addition to `setup.cfg`:
https://github.com/codespell-project/codespell#using-a-config-file
Specifying options in a config file instead of command line options in
`.pre-commit-config.yaml` ensures codespell uses the same options when
run as pre-commit hook or from the command line in the repository root
directory.
* Bump fsspec from 2023.10.0 to 2023.12.1 (#1600)
* Bump fsspec from 2023.10.0 to 2023.12.1
Bumps [fsspec](https://github.com/fsspec/filesystem_spec) from 2023.10.0 to 2023.12.1.
- [Commits](https://github.com/fsspec/filesystem_spec/compare/2023.10.0...2023.12.1)
---
updated-dependencies:
- dependency-name: fsspec
dependency-type: direct:development
update-type: version-update:semver-minor
...
Signed-off-by: dependabot[bot] <support@github.com>
* Update s3fs as well
* Fix s3fs
---------
Signed-off-by: dependabot[bot] <support@github.com>
Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com>
Co-authored-by: Josh Moore <josh@openmicroscopy.org>
* Add type hints to zarr.create (#1536)
* Add type hints to zarr.create
* Use protocol for MetaArray
* Use protocol for Synchronizer
* Fix Path typing
* Add release note
* Fix dim separator typing
* Ignore ... in coverage reporting
* Fix chunk typing
---------
Co-authored-by: Davis Bennett <davis.v.bennett@gmail.com>
* Remove unused mypy ignore comments (#1602)
Co-authored-by: Davis Bennett <davis.v.bennett@gmail.com>
* Bump actions/setup-python from 4.7.1 to 5.0.0 (#1605)
Bumps [actions/setup-python](https://github.com/actions/setup-python) from 4.7.1 to 5.0.0.
- [Release notes](https://github.com/actions/setup-python/releases)
- [Commits](https://github.com/actions/setup-python/compare/v4.7.1...v5.0.0)
---
updated-dependencies:
- dependency-name: actions/setup-python
dependency-type: direct:production
update-type: version-update:semver-major
...
Signed-off-by: dependabot[bot] <support@github.com>
Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com>
Co-authored-by: Joe Hamman <joe@earthmover.io>
* Bump github/codeql-action from 2 to 3 (#1609)
Bumps [github/codeql-action](https://github.com/github/codeql-action) from 2 to 3.
- [Release notes](https://github.com/github/codeql-action/releases)
- [Changelog](https://github.com/github/codeql-action/blob/main/CHANGELOG.md)
- [Commits](https://github.com/github/codeql-action/compare/v2...v3)
---
updated-dependencies:
- dependency-name: github/codeql-action
dependency-type: direct:production
update-type: version-update:semver-major
...
Signed-off-by: dependabot[bot] <support@github.com>
Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com>
* chore: update pre-commit hooks (#1448)
* chore: update pre-commit hooks
updates:
- https://github.com/charliermarsh/ruff-pre-commit → https://github.com/astral-sh/ruff-pre-commit
- [github.com/astral-sh/ruff-pre-commit: v0.0.224 → v0.1.8](https://github.com/astral-sh/ruff-pre-commit/compare/v0.0.224...v0.1.8)
- [github.com/psf/black: 23.10.1 → 23.12.0](https://github.com/psf/black/compare/23.10.1...23.12.0)
- [github.com/codespell-project/codespell: v2.2.5 → v2.2.6](https://github.com/codespell-project/codespell/compare/v2.2.5...v2.2.6)
- [github.com/pre-commit/pre-commit-hooks: v4.4.0 → v4.5.0](https://github.com/pre-commit/pre-commit-hooks/compare/v4.4.0...v4.5.0)
- [github.com/pre-commit/mirrors-mypy: v1.3.0 → v1.7.1](https://github.com/pre-commit/mirrors-mypy/compare/v1.3.0...v1.7.1)
* Attempt to fix ruff
* Use isinstance
---------
Co-authored-by: pre-commit-ci[bot] <66853113+pre-commit-ci[bot]@users.noreply.github.com>
Co-authored-by: Josh Moore <josh@openmicroscopy.org>
* chore: update pre-commit hooks (#1618)
updates:
- [github.com/astral-sh/ruff-pre-commit: v0.1.8 → v0.1.9](https://github.com/astral-sh/ruff-pre-commit/compare/v0.1.8...v0.1.9)
- [github.com/psf/black: 23.12.0 → 23.12.1](https://github.com/psf/black/compare/23.12.0...23.12.1)
- [github.com/pre-commit/mirrors-mypy: v1.7.1 → v1.8.0](https://github.com/pre-commit/mirrors-mypy/compare/v1.7.1...v1.8.0)
Co-authored-by: pre-commit-ci[bot] <66853113+pre-commit-ci[bot]@users.noreply.github.com>
* Bump fsspec from 2023.12.1 to 2023.12.2 (#1606)
* Bump fsspec from 2023.12.1 to 2023.12.2
Bumps [fsspec](https://github.com/fsspec/filesystem_spec) from 2023.12.1 to 2023.12.2.
- [Commits](https://github.com/fsspec/filesystem_spec/compare/2023.12.1...2023.12.2)
---
updated-dependencies:
- dependency-name: fsspec
dependency-type: direct:development
update-type: version-update:semver-patch
...
Signed-off-by: dependabot[bot] <support@github.com>
* Update requirements_dev_optional.txt
---------
Signed-off-by: dependabot[bot] <support@github.com>
Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com>
Co-authored-by: Joe Hamman <joe@earthmover.io>
* Bump pytest-doctestplus from 1.0.0 to 1.1.0 (#1619)
Bumps [pytest-doctestplus](https://github.com/scientific-python/pytest-doctestplus) from 1.0.0 to 1.1.0.
- [Release notes](https://github.com/scientific-python/pytest-doctestplus/releases)
- [Changelog](https://github.com/scientific-python/pytest-doctestplus/blob/main/CHANGES.rst)
- [Commits](https://github.com/scientific-python/pytest-doctestplus/compare/v1.0.0...v1.1.0)
---
updated-dependencies:
- dependency-name: pytest-doctestplus
dependency-type: direct:development
update-type: version-update:semver-minor
...
Signed-off-by: dependabot[bot] <support@github.com>
Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com>
* Bump pytest from 7.4.3 to 7.4.4 (#1622)
* chore: update pre-commit hooks (#1626)
updates:
- [github.com/astral-sh/ruff-pre-commit: v0.1.9 → v0.1.11](https://github.com/astral-sh/ruff-pre-commit/compare/v0.1.9...v0.1.11)
Co-authored-by: pre-commit-ci[bot] <66853113+pre-commit-ci[bot]@users.noreply.github.com>
* Create TEAM.md (#1628)
* Drop python 3.8 and numpy 1.20 (#1557)
* Drop 3.8 and add 3.12
* Try removing line_profiler
* Also bump the minimal numpy to 1.21
* Drop 3.12 again
* Revert "Try removing line_profiler"
This reverts commit 837854bec99a9d25aece2ead9666f01690d228cc.
* Update release.rst
---------
Co-authored-by: Joe Hamman <joe@earthmover.io>
Co-authored-by: jakirkham <jakirkham@gmail.com>
* Add Norman Rzepka to core-dev team (#1630)
* chore: update pre-commit hooks (#1633)
updates:
- [github.com/astral-sh/ruff-pre-commit: v0.1.11 → v0.1.13](https://github.com/astral-sh/ruff-pre-commit/compare/v0.1.11...v0.1.13)
Co-authored-by: pre-commit-ci[bot] <66853113+pre-commit-ci[bot]@users.noreply.github.com>
* Bump actions/download-artifact from 3 to 4 (#1611)
* Bump actions/download-artifact from 3 to 4
Bumps [actions/download-artifact](https://github.com/actions/download-artifact) from 3 to 4.
- [Release notes](https://github.com/actions/download-artifact/releases)
- [Commits](https://github.com/actions/download-artifact/compare/v3...v4)
---
updated-dependencies:
- dependency-name: actions/download-artifact
dependency-type: direct:production
update-type: version-update:semver-major
...
Signed-off-by: dependabot[bot] <support@github.com>
* Also bump upload-artifact
see https://github.com/actions/download-artifact?tab=readme-ov-file#breaking-changes
> Downloading artifacts that were created from action/upload-artifact@v3 and below are not supported.
---------
Signed-off-by: dependabot[bot] <support@github.com>
Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com>
Co-authored-by: Joe Hamman <joe@earthmover.io>
Co-authored-by: Josh Moore <josh@openmicroscopy.org>
* Update tutorial.rst to include section about accessing Zip Files on S3 (#1615)
* Update tutorial.rst to include section about accessing Zip Files on S3
Per discussion here, add information about about accessing zip files on s3:
https://github.com/zarr-developers/zarr-python/discussions/1613
* Update release.rst
* Implement d-v-b's suggestions
---------
Co-authored-by: Davis Bennett <davis.v.bennett@gmail.com>
Co-authored-by: Josh Moore <josh@openmicroscopy.org>
* doc(v3): add v3 roadmap and design document (#1583)
* doc(v3): add v3 roadmap and design document
* Update v3-roadmap-and-design.md
* updates after latest round of reviews
* Update v3-roadmap-and-design.md
Co-authored-by: Norman Rzepka <code@normanrz.com>
* Update v3-roadmap-and-design.md
Co-authored-by: Sanket Verma <svsanketverma5@gmail.com>
---------
Co-authored-by: Norman Rzepka <code@normanrz.com>
Co-authored-by: Sanket Verma <svsanketverma5@gmail.com>
* chore: update pre-commit hooks (#1636)
updates:
- [github.com/astral-sh/ruff-pre-commit: v0.1.13 → v0.1.14](https://github.com/astral-sh/ruff-pre-commit/compare/v0.1.13...v0.1.14)
Co-authored-by: pre-commit-ci[bot] <66853113+pre-commit-ci[bot]@users.noreply.github.com>
* Fix zarr sync (#1663)
This patch removes fasteners and disables zarr.sync which uses process and thread
Co-authored-by: Wei Ouyang <oeway007@gmail.com>
* Update release.rst (#1621)
* Update release.rst
* Update release.rst
* Change 2.16.2 → 2.17.0
* Update moto for test_s3
* Skip bsddb3 tests to prevent warning failure
* Fix more user warning tests
* Fix even more user warning tests
* Skip coverage for importorskips
* Move to have_X skip method for deps
* Update release.rst (PR#1663)
* Fix test_core.py 'compile' issues
* Add black formatting
* Drop Windows/3.9 build due to unrelated failures
* fix typo
---------
Co-authored-by: Davis Bennett <davis.v.bennett@gmail.com>
Co-authored-by: Josh Moore <josh@openmicroscopy.org>
* Bump numpy from 1.24.3 to 1.26.1 (#1543)
Bumps [numpy](https://github.com/numpy/numpy) from 1.24.3 to 1.26.1.
- [Release notes](https://github.com/numpy/numpy/releases)
- [Changelog](https://github.com/numpy/numpy/blob/main/doc/RELEASE_WALKTHROUGH.rst)
- [Commits](https://github.com/numpy/numpy/compare/v1.24.3...v1.26.1)
---
updated-dependencies:
- dependency-name: numpy
dependency-type: direct:development
update-type: version-update:semver-minor
...
Signed-off-by: dependabot[bot] <support@github.com>
Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com>
Co-authored-by: Davis Bennett <davis.v.bennett@gmail.com>
Co-authored-by: Josh Moore <josh@openmicroscopy.org>
Co-authored-by: Joe Hamman <joe@earthmover.io>
* chore: update pre-commit hooks (#1642)
* chore: update pre-commit hooks
updates:
- [github.com/astral-sh/ruff-pre-commit: v0.1.14 → v0.2.1](https://github.com/astral-sh/ruff-pre-commit/compare/v0.1.14...v0.2.1)
- [github.com/psf/black: 23.12.1 → 24.2.0](https://github.com/psf/black/compare/23.12.1...24.2.0)
* run black incl. comments for '...'
---------
Co-authored-by: pre-commit-ci[bot] <66853113+pre-commit-ci[bot]@users.noreply.github.com>
Co-authored-by: Josh Moore <josh@openmicroscopy.org>
* Bump ipywidgets from 8.1.0 to 8.1.1 (#1538)
Bumps [ipywidgets](https://github.com/jupyter-widgets/ipywidgets) from 8.1.0 to 8.1.1.
- [Release notes](https://github.com/jupyter-widgets/ipywidgets/releases)
- [Commits](https://github.com/jupyter-widgets/ipywidgets/compare/8.1.0...8.1.1)
---
updated-dependencies:
- dependency-name: ipywidgets
dependency-type: direct:development
update-type: version-update:semver-patch
...
Signed-off-by: dependabot[bot] <support@github.com>
Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com>
Co-authored-by: Davis Bennett <davis.v.bennett@gmail.com>
Co-authored-by: Josh Moore <josh@openmicroscopy.org>
* Proper argument for numpy.reshape (#1425)
`numpy.reshape` not only accepts a tuple of ints, but also a simple int.
Besides `(10)` is not a tuple and is identical to `10`, unlike `(10,)`.
* Bump ipywidgets from 8.1.1 to 8.1.2 (#1666)
Bumps [ipywidgets](https://github.com/jupyter-widgets/ipywidgets) from 8.1.1 to 8.1.2.
- [Release notes](https://github.com/jupyter-widgets/ipywidgets/releases)
- [Commits](https://github.com/jupyter-widgets/ipywidgets/compare/8.1.1...8.1.2)
---
updated-dependencies:
- dependency-name: ipywidgets
dependency-type: direct:development
update-type: version-update:semver-patch
...
Signed-off-by: dependabot[bot] <support@github.com>
Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com>
* docs: ZIP-related tweaks (#1641)
* docs: use 'ZIP archive' instead of 'zip file'; clarify utility of caching in s3 + ZIP example; style
* docs: update release notes, correct spelling of greg lee's name in past release notes, and fix markup in past release notes
* docs: use 'ZIP archive' instead of 'zip file'; clarify utility of caching in s3 + ZIP example; style
* docs: update release notes, correct spelling of greg lee's name in past release notes, and fix markup in past release notes
* Bump numpy from 1.26.1 to 1.26.4 (#1669)
Bumps [numpy](https://github.com/numpy/numpy) from 1.26.1 to 1.26.4.
- [Release notes](https://github.com/numpy/numpy/releases)
- [Changelog](https://github.com/numpy/numpy/blob/main/doc/RELEASE_WALKTHROUGH.rst)
- [Commits](https://github.com/numpy/numpy/compare/v1.26.1...v1.26.4)
---
updated-dependencies:
- dependency-name: numpy
dependency-type: direct:development
update-type: version-update:semver-patch
...
Signed-off-by: dependabot[bot] <support@github.com>
Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com>
* Change occurrences of % and format() to f-strings (#1423)
Co-authored-by: Joe Hamman <joe@earthmover.io>
Co-authored-by: Josh Moore <josh@openmicroscopy.org>
* chore: update pre-commit hooks (#1672)
updates:
- [github.com/astral-sh/ruff-pre-commit: v0.2.1 → v0.2.2](https://github.com/astral-sh/ruff-pre-commit/compare/v0.2.1...v0.2.2)
Co-authored-by: pre-commit-ci[bot] <66853113+pre-commit-ci[bot]@users.noreply.github.com>
* Bump pymongo from 4.6.1 to 4.6.2 (#1674)
Bumps [pymongo](https://github.com/mongodb/mongo-python-driver) from 4.6.1 to 4.6.2.
- [Release notes](https://github.com/mongodb/mongo-python-driver/releases)
- [Changelog](https://github.com/mongodb/mongo-python-driver/blob/4.6.2/doc/changelog.rst)
- [Commits](https://github.com/mongodb/mongo-python-driver/compare/4.6.1...4.6.2)
---
updated-dependencies:
- dependency-name: pymongo
dependency-type: direct:development
update-type: version-update:semver-patch
...
Signed-off-by: dependabot[bot] <support@github.com>
Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com>
* Bump conda-incubator/setup-miniconda from 3.0.1 to 3.0.2 (#1677)
Bumps [conda-incubator/setup-miniconda](https://github.com/conda-incubator/setup-miniconda) from 3.0.1 to 3.0.2.
- [Release notes](https://github.com/conda-incubator/setup-miniconda/releases)
- [Changelog](https://github.com/conda-incubator/setup-miniconda/blob/main/CHANGELOG.md)
- [Commits](https://github.com/conda-incubator/setup-miniconda/compare/v3.0.1...v3.0.2)
---
updated-dependencies:
- dependency-name: conda-incubator/setup-miniconda
dependency-type: direct:production
update-type: version-update:semver-patch
...
Signed-off-by: dependabot[bot] <support@github.com>
Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com>
* Update config.yml with Zulip
* Type dimension separator (#1620)
Co-authored-by: Davis Bennett <davis.v.bennett@gmail.com>
* Replace Gitter with new Zulip Chat link (#1685)
* Replace Gitter with Zulip
* Replace Gitter with Zulip in remaining places
* Bump redis from 5.0.1 to 5.0.2 (#1688)
Bumps [redis](https://github.com/redis/redis-py) from 5.0.1 to 5.0.2.
- [Release notes](https://github.com/redis/redis-py/releases)
- [Changelog](https://github.com/redis/redis-py/blob/master/CHANGES)
- [Commits](https://github.com/redis/redis-py/compare/v5.0.1...v5.0.2)
---
updated-dependencies:
- dependency-name: redis
dependency-type: direct:development
update-type: version-update:semver-patch
...
Signed-off-by: dependabot[bot] <support@github.com>
Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com>
* Bump pypa/gh-action-pypi-publish from 1.8.11 to 1.8.12 (#1691)
Bumps [pypa/gh-action-pypi-publish](https://github.com/pypa/gh-action-pypi-publish) from 1.8.11 to 1.8.12.
- [Release notes](https://github.com/pypa/gh-action-pypi-publish/releases)
- [Commits](https://github.com/pypa/gh-action-pypi-publish/compare/v1.8.11...v1.8.12)
---
updated-dependencies:
- dependency-name: pypa/gh-action-pypi-publish
dependency-type: direct:production
update-type: version-update:semver-patch
...
Signed-off-by: dependabot[bot] <support@github.com>
Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com>
* Bump pytest-doctestplus from 1.1.0 to 1.2.0 (#1693)
Bumps [pytest-doctestplus](https://github.com/scientific-python/pytest-doctestplus) from 1.1.0 to 1.2.0.
- [Release notes](https://github.com/scientific-python/pytest-doctestplus/releases)
- [Changelog](https://github.com/scientific-python/pytest-doctestplus/blob/main/CHANGES.rst)
- [Commits](https://github.com/scientific-python/pytest-doctestplus/compare/v1.1.0...v1.2.0)
---
updated-dependencies:
- dependency-name: pytest-doctestplus
dependency-type: direct:development
update-type: version-update:semver-minor
...
Signed-off-by: dependabot[bot] <support@github.com>
Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com>
* Fix RTD build (#1694)
* Update release.rst for v2.17.1 (#1673)
* Update release.rst for v2.17.1
* Change the copyright year from 2023 → 2024.
* Update release.rst for v2.17.1
* Bump pytest-timeout from 2.2.0 to 2.3.1 (#1697)
Bumps [pytest-timeout](https://github.com/pytest-dev/pytest-timeout) from 2.2.0 to 2.3.1.
- [Commits](https://github.com/pytest-dev/pytest-timeout/compare/2.2.0...2.3.1)
---
updated-dependencies:
- dependency-name: pytest-timeout
dependency-type: direct:development
update-type: version-update:semver-minor
...
Signed-off-by: dependabot[bot] <support@github.com>
Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com>
* Bump conda-incubator/setup-miniconda from 3.0.2 to 3.0.3 (#1690)
Bumps [conda-incubator/setup-miniconda](https://github.com/conda-incubator/setup-miniconda) from 3.0.2 to 3.0.3.
- [Release notes](https://github.com/conda-incubator/setup-miniconda/releases)
- [Changelog](https://github.com/conda-incubator/setup-miniconda/blob/main/CHANGELOG.md)
- [Commits](https://github.com/conda-incubator/setup-miniconda/compare/v3.0.2...v3.0.3)
---
updated-dependencies:
- dependency-name: conda-incubator/setup-miniconda
dependency-type: direct:production
update-type: version-update:semver-patch
...
Signed-off-by: dependabot[bot] <support@github.com>
Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com>
Co-authored-by: Sanket Verma <svsanketverma5@gmail.com>
* docs(tutorial.rst): fix link to GCSMap (#1689)
* Update installation.rst stating version support policy (#1665)
* Update installation.rst stating version support policy
* Update docs/installation.rst
Co-authored-by: Joe Hamman <jhamman1@gmail.com>
* Update docs/installation.rst
---------
Co-authored-by: Joe Hamman <jhamman1@gmail.com>
* Bump pypa/gh-action-pypi-publish from 1.8.12 to 1.8.14 (#1700)
Bumps [pypa/gh-action-pypi-publish](https://github.com/pypa/gh-action-pypi-publish) from 1.8.12 to 1.8.14.
- [Release notes](https://github.com/pypa/gh-action-pypi-publish/releases)
- [Commits](https://github.com/pypa/gh-action-pypi-publish/compare/v1.8.12...v1.8.14)
---
updated-dependencies:
- dependency-name: pypa/gh-action-pypi-publish
dependency-type: direct:production
update-type: version-update:semver-patch
...
Signed-off-by: dependabot[bot] <support@github.com>
Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com>
* Bump pytest-doctestplus from 1.2.0 to 1.2.1 (#1699)
Bumps [pytest-doctestplus](https://github.com/scientific-python/pytest-doctestplus) from 1.2.0 to 1.2.1.
- [Release notes](https://github.com/scientific-python/pytest-doctestplus/releases)
- [Changelog](https://github.com/scientific-python/pytest-doctestplus/blob/main/CHANGES.rst)
- [Commits](https://github.com/scientific-python/pytest-doctestplus/compare/v1.2.0...v1.2.1)
---
updated-dependencies:
- dependency-name: pytest-doctestplus
dependency-type: direct:development
update-type: version-update:semver-patch
...
Signed-off-by: dependabot[bot] <support@github.com>
Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com>
Co-authored-by: Sanket Verma <svsanketverma5@gmail.com>
* Bump redis from 5.0.2 to 5.0.3 (#1698)
Bumps [redis](https://github.com/redis/redis-py) from 5.0.2 to 5.0.3.
- [Release notes](https://github.com/redis/redis-py/releases)
- [Changelog](https://github.com/redis/redis-py/blob/master/CHANGES)
- [Commits](https://github.com/redis/redis-py/compare/v5.0.2...v5.0.3)
---
updated-dependencies:
- dependency-name: redis
dependency-type: direct:development
update-type: version-update:semver-patch
...
Signed-off-by: dependabot[bot] <support@github.com>
Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com>
Co-authored-by: Sanket Verma <svsanketverma5@gmail.com>
* Add Python 3.12 to CI (#1719)
* Update python-package.yml
* bump numpy versions
* bump min python version
* Update release.rst
* Bump pytest-cov from 4.1.0 to 5.0.0 (#1722)
Bumps [pytest-cov](https://github.com/pytest-dev/pytest-cov) from 4.1.0 to 5.0.0.
- [Changelog](https://github.com/pytest-dev/pytest-cov/blob/master/CHANGELOG.rst)
- [Commits](https://github.com/pytest-dev/pytest-cov/compare/v4.1.0...v5.0.0)
---
updated-dependencies:
- dependency-name: pytest-cov
dependency-type: direct:development
update-type: version-update:semver-major
...
Signed-off-by: dependabot[bot] <support@github.com>
Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com>
* chore: update pre-commit hooks (#1708)
updates:
- [github.com/astral-sh/ruff-pre-commit: v0.2.2 → v0.3.3](https://github.com/astral-sh/ruff-pre-commit/compare/v0.2.2...v0.3.3)
- [github.com/psf/black: 24.2.0 → 24.3.0](https://github.com/psf/black/compare/24.2.0...24.3.0)
- [github.com/pre-commit/mirrors-mypy: v1.8.0 → v1.9.0](https://github.com/pre-commit/mirrors-mypy/compare/v1.8.0...v1.9.0)
Co-authored-by: pre-commit-ci[bot] <66853113+pre-commit-ci[bot]@users.noreply.github.com>
Co-authored-by: Sanket Verma <svsanketverma5@gmail.com>
* chore: update pre-commit hooks (#1723)
updates:
- [github.com/astral-sh/ruff-pre-commit: v0.3.3 → v0.3.4](https://github.com/astral-sh/ruff-pre-commit/compare/v0.3.3...v0.3.4)
Co-authored-by: pre-commit-ci[bot] <66853113+pre-commit-ci[bot]@users.noreply.github.com>
* Fix release notes (following #1719) (#1725)
* Override ipython repr methods. (#1724)
Closes #1716
This avoids expensive lookups against object stores.
* Bump pymongo from 4.6.2 to 4.6.3 (#1729)
* Remove v1 and v2 specification (#1582)
* Remove v1 and v2 specification
* fix warning
---------
Co-authored-by: Davis Bennett <davis.v.bennett@gmail.com>
* chore: update pre-commit hooks (#1738)
updates:
- [github.com/astral-sh/ruff-pre-commit: v0.3.4 → v0.3.5](https://github.com/astral-sh/ruff-pre-commit/compare/v0.3.4...v0.3.5)
Co-authored-by: pre-commit-ci[bot] <66853113+pre-commit-ci[bot]@users.noreply.github.com>
* Optimize Array.info and Group.info (#1733)
* Optimize Array.info.
Avoid repeated computes of the same value (getsize)
* Don't have InfoReporter query items twice.
Apparently IPython will run both __repr__ and _repr_html_
so we were calling `getsize` twice.
* Group too
* Apply suggestions from code review
Co-authored-by: Joe Hamman <jhamman1@gmail.com>
---------
Co-authored-by: Joe Hamman <jhamman1@gmail.com>
* Bump actions/setup-python from 5.0.0 to 5.1.0 (#1736)
Bumps [actions/setup-python](https://github.com/actions/setup-python) from 5.0.0 to 5.1.0.
- [Release notes](https://github.com/actions/setup-python/releases)
- [Commits](https://github.com/actions/setup-python/compare/v5.0.0...v5.1.0)
---
updated-dependencies:
- dependency-name: actions/setup-python
dependency-type: direct:production
update-type: version-update:semver-minor
...
Signed-off-by: dependabot[bot] <support@github.com>
Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com>
* Couple fixes (#1737)
* Use `is` when comparing `type` of two objects
* Unnecessary `None` provided as default
* Fix tests with Pytest 8 (#1714)
* Bump pytest version
* Use editable install when testing
---------
Co-authored-by: Sanket Verma <svsanketverma5@gmail.com>
* Avoid redundant __contains__ (#1739)
Let's try grabbing the array.json and group.json files,
and check for `*NotFoundError`, instead of using contains first.
Co-authored-by: Davis Bennett <davis.v.bennett@gmail.com>
* Array & Group: Use already loaded attributes to populate cache. (#1734)
* Array: Use already loaded attributes to populate cache.
* Group: Use already loaded attributes to populate cache.
* Fix
* Add release note
* Optimize attribute setting (#1741)
* Optimize attribute setting
* Add release note
---------
Co-authored-by: Davis Bennett <davis.v.bennett@gmail.com>
* Make sure fs exceptions are raised if not MissingFs exceptions (clone) (#1604)
* Make sure fs exceptions are raised if not Missing
* lint
* add missing argument in tests, lint
* clear memory filesystem during test
* improve commenting
* add memory_store fixture, getitems performance
* Update release.rst
* improve FSStore.test_exception coverage
---------
Co-authored-by: Martin Durant <martin.durant@alumni.utoronto.ca>
Co-authored-by: Joe Hamman <joe@earthmover.io>
Co-authored-by: Josh Moore <josh@openmicroscopy.org>
Co-authored-by: Sanket Verma <svsanketverma5@gmail.com>
* chore(release): update changelog for 2.17.2 (#1775)
* chore(docs): reset release notes as unreleased (#1776)
* Bump codecov/codecov-action from 3 to 4 (#1647)
* Bump codecov/codecov-action from 3 to 4
Bumps [codecov/codecov-action](https://github.com/codecov/codecov-action) from 3 to 4.
- [Release notes](https://github.com/codecov/codecov-action/releases)
- [Changelog](https://github.com/codecov/codecov-action/blob/main/CHANGELOG.md)
- [Commits](https://github.com/codecov/codecov-action/compare/v3...v4)
---
updated-dependencies:
- dependency-name: codecov/codecov-action
dependency-type: direct:production
update-type: version-update:semver-major
...
Signed-off-by: dependabot[bot] <support@github.com>
* Set codecov env
---------
Signed-off-by: dependabot[bot] <support@github.com>
Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com>
Co-authored-by: Josh Moore <josh@openmicroscopy.org>
* Update release.rst for v2.17.2 (#1778)
* Update release.rst for v2.17.2
* Minor edits
---------
Co-authored-by: Joe Hamman <joe@earthmover.io>
* Deprecate the experimental v3 implementation (#1802)
* deprecate(exp-v3): Add a future warning about the pending removal of the experimental v3 implementation
* ignore warning
* add test
* chore: update pre-commit hooks (#1779)
updates:
- [github.com/astral-sh/ruff-pre-commit: v0.3.5 → v0.3.7](https://github.com/astral-sh/ruff-pre-commit/compare/v0.3.5...v0.3.7)
- [github.com/psf/black: 24.3.0 → 24.4.0](https://github.com/psf/black/compare/24.3.0...24.4.0)
- [github.com/pre-commit/pre-commit-hooks: v4.5.0 → v4.6.0](https://github.com/pre-commit/pre-commit-hooks/compare/v4.5.0...v4.6.0)
Co-authored-by: pre-commit-ci[bot] <66853113+pre-commit-ci[bot]@users.noreply.github.com>
* Fix `is_total_slice` for size-1 dimensions (#1800)
Closes #1730
Co-authored-by: Ryan Abernathey <ryan.abernathey@gmail.com>
Co-authored-by: Joe Hamman <joe@earthmover.io>
* add note to the top of the release page noting the plan for 2.18.* and 3.0 (#1816)
* Bump conda-incubator/setup-miniconda from 3.0.3 to 3.0.4 (#1824)
Bumps [conda-incubator/setup-miniconda](https://github.com/conda-incubator/setup-miniconda) from 3.0.3 to 3.0.4.
- [Release notes](https://github.com/conda-incubator/setup-miniconda/releases)
- [Changelog](https://github.com/conda-incubator/setup-miniconda/blob/main/CHANGELOG.md)
- [Commits](https://github.com/conda-incubator/setup-miniconda/compare/v3.0.3...v3.0.4)
---
updated-dependencies:
- dependency-name: conda-incubator/setup-miniconda
dependency-type: direct:production
update-type: version-update:semver-patch
...
Signed-off-by: dependabot[bot] <support@github.com>
Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com>
* dep(docs): deprecate experimental v3 support in docs (#1807)
* dep(docs): deprecate experimental v3 support in docs
* Apply suggestions from code review
Co-authored-by: Josh Moore <josh@openmicroscopy.org>
Co-authored-by: Sanket Verma <svsanketverma5@gmail.com>
---------
Co-authored-by: Josh Moore <josh@openmicroscopy.org>
Co-authored-by: Sanket Verma <svsanketverma5@gmail.com>
* Bump h5py from 3.10.0 to 3.11.0 (#1786)
Bumps [h5py](https://github.com/h5py/h5py) from 3.10.0 to 3.11.0.
- [Release notes](https://github.com/h5py/h5py/releases)
- [Changelog](https://github.com/h5py/h5py/blob/master/docs/release_guide.rst)
- [Commits](https://github.com/h5py/h5py/compare/3.10.0...3.11.0)
---
updated-dependencies:
- dependency-name: h5py
dependency-type: direct:development
update-type: version-update:semver-minor
...
Signed-off-by: dependabot[bot] <support@github.com>
Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com>
Co-authored-by: Joe Hamman <joe@earthmover.io>
* Bump redis from 5.0.3 to 5.0.4 (#1810)
Bumps [redis](https://github.com/redis/redis-py) from 5.0.3 to 5.0.4.
- [Release notes](https://github.com/redis/redis-py/releases)
- [Changelog](https://github.com/redis/redis-py/blob/master/CHANGES)
- [Commits](https://github.com/redis/redis-py/compare/v5.0.3...v5.0.4)
---
updated-dependencies:
- dependency-name: redis
dependency-type: direct:development
update-type: version-update:semver-patch
...
Signed-off-by: dependabot[bot] <support@github.com>
Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com>
* deprecate(stores): add deprecation warnings to stores that we plan to remove in v3 (#1801)
* deprecate(stores): add deprecation warnings to DBMStore, LMDBStore, SQLiteStore, MongoDBStore, RedisStore, and ABSStore
* filter warnings in pytest config
* more deprecation warnings in docstrings
* add release note
* use np.inf instead of PINF/NINF (#1842)
* use np.inf instead of PINF/NINF
* update release notes
* chore: update pre-commit hooks (#1825)
updates:
- [github.com/astral-sh/ruff-pre-commit: v0.4.1 → v0.4.3](https://github.com/astral-sh/ruff-pre-commit/compare/v0.4.1...v0.4.3)
- [github.com/psf/black: 24.4.0 → 24.4.2](https://github.com/psf/black/compare/24.4.0...24.4.2)
- [github.com/pre-commit/mirrors-mypy: v1.9.0 → v1.10.0](https://github.com/pre-commit/mirrors-mypy/compare/v1.9.0...v1.10.0)
Co-authored-by: pre-commit-ci[bot] <66853113+pre-commit-ci[bot]@users.noreply.github.com>
* Enable ruff/bugbear rules (B) and fix issues (#1702)
* Enable ruff/bugbear rules (B)
As suggested by Repo-Review.
* Fix ruff/bugbear issue (B007)
B007 Loop control variable `key` not used within loop body
https://docs.astral.sh/ruff/rules/unused-loop-control-variable/
* Fix ruff/bugbear issue (B015)
B015 Pointless comparison. Did you mean to assign a value?
Otherwise, prepend `assert` or remove it.
https://docs.astral.sh/ruff/rules/useless-comparison/
* Fix ruff/bugbear issues (B028)
B028 No explicit `stacklevel` keyword argument found
https://docs.astral.sh/ruff/rules/no-explicit-stacklevel/
* Fix ruff/bugbear issues (B904)
B904 Within an `except` clause, raise exceptions with `raise ... from err` or
`raise ... from None` to distinguish them from errors in exception handling
https://docs.astral.sh/ruff/rules/raise-without-from-inside-except/
* Document changes in docs/release.rst
* Disable ruff/bugbear rule (B017)
B017 `pytest.raises(Exception)` should be considered evil
https://docs.astral.sh/ruff/rules/assert-raises-exception/
---------
Co-authored-by: Joe Hamman <joe@earthmover.io>
* Release notes for 2.18.0 (#1843)
* doc: cleanup release notes for 2.18.0
* Update release.rst (#1850)
* Group dependabot updates (#1854)
* chore: update pre-commit hooks (#1876)
updates:
- [github.com/astral-sh/ruff-pre-commit: v0.4.3 → v0.4.4](https://github.com/astral-sh/ruff-pre-commit/compare/v0.4.3...v0.4.4)
Co-authored-by: pre-commit-ci[bot] <66853113+pre-commit-ci[bot]@users.noreply.github.com>
* Fix a regression with scalar indexing due to #1800 (#1875)
* release notes for 2.18.1 (#1885)
* reset release notes (#1886)
* Add zstd to old V3 supported codecs (#1914)
* add zstd to old V3 supported codecs
* get to full test coverage and add release note
* fix pre-commit
* doc: update release notes for 2.18.2 (#1915)
* Drop support for Python 3.9
* Revert "Drop support for Python 3.9"
This reverts commit a054afbbdaf7c8560d0ce5df77af969bc863e335.
* Update TEAM.md (#2071)
* [v2] Fix doctests with numpy 2.0 (#2073)
* Fix version number in built docs (#2044)
* Fix orthogonal indexing with scalar. (#1947)
Co-authored-by: David Stansby <dstansby@gmail.com>
* Bump the requirements group across 1 directory with 7 updates (#2092)
Bumps the requirements group with 7 updates in the / directory:
| Package | From | To |
| --- | --- | --- |
| [numpy](https://github.com/numpy/numpy) | `1.26.4` | `2.0.1` |
| [ipywidgets](https://github.com/jupyter-widgets/ipywidgets) | `8.1.2` | `8.1.3` |
| [setuptools-scm](https://github.com/pypa/setuptools_scm) | `8.0.4` | `8.1.0` |
| [pytest](https://github.com/pytest-dev/pytest) | `8.1.1` | `8.3.2` |
| [lmdb](https://github.com/jnwatson/py-lmdb) | `1.4.1` | `1.5.1` |
| [redis](https://github.com/redis/redis-py) | `5.0.4` | `5.0.8` |
| [pymongo](https://github.com/mongodb/mongo-python-driver) | `4.6.3` | `4.8.0` |
Updates `numpy` from 1.26.4 to 2.0.1
- [Release notes](https://github.com/numpy/numpy/releases)
- [Changelog](https://github.com/numpy/numpy/blob/main/doc/RELEASE_WALKTHROUGH.rst)
- [Commits](https://github.com/numpy/numpy/compare/v1.26.4...v2.0.1)
Updates `ipywidgets` from 8.1.2 to 8.1.3
- [Release notes](https://github.com/jupyter-widgets/ipywidgets/releases)
- [Commits](https://github.com/jupyter-widgets/ipywidgets/compare/8.1.2...8.1.3)
Updates `setuptools-scm` from 8.0.4 to 8.1.0
- [Release notes](https://github.com/pypa/setuptools_scm/releases)
- [Changelog](https://github.com/pypa/setuptools_scm/blob/main/CHANGELOG.md)
- [Commits](https://github.com/pypa/setuptools_scm/compare/v8.0.4...v8.1.0)
Updates `pytest` from 8.1.1 to 8.3.2
- [Release notes](https://github.com/pytest-dev/pytest/releases)
- [Changelog](https://github.com/pytest-dev/pytest/blob/main/CHANGELOG.rst)
- [Commits](https://github.com/pytest-dev/pytest/compare/8.1.1...8.3.2)
Updates `lmdb` from 1.4.1 to 1.5.1
- [Changelog](https://github.com/jnwatson/py-lmdb/blob/master/ChangeLog)
- [Commits](https://github.com/jnwatson/py-lmdb/compare/py-lmdb_1.4.1...py-lmdb_1.5.1)
Updates `redis` from 5.0.4 to 5.0.8
- [Release notes](https://github.com/redis/redis-py/releases)
- [Changelog](https://github.com/redis/redis-py/blob/master/CHANGES)
- [Commits](https://github.com/redis/redis-py/compare/v5.0.4...v5.0.8)
Updates `pymongo` from 4.6.3 to 4.8.0
- [Release notes](https://github.com/mongodb/mongo-python-driver/releases)
- [Changelog](https://github.com/mongodb/mongo-python-driver/blob/master/doc/changelog.rst)
- [Commits](https://github.com/mongodb/mongo-python-driver/compare/4.6.3...4.8.0)
---
updated-dependencies:
- dependency-name: numpy
dependency-type: direct:development
update-type: version-update:semver-major
dependency-group: requirements
- dependency-name: ipywidgets
dependency-type: direct:development
update-type: version-update:semver-patch
dependency-group: requirements
- dependency-name: setuptools-scm
dependency-type: direct:development
update-type: version-update:semver-minor
dependency-group: requirements
- dependency-name: pytest
dependency-type: direct:development
update-type: version-update:semver-minor
dependency-group: requirements
- dependency-name: lmdb
dependency-type: direct:development
update-type: version-update:semver-minor
dependency-group: requirements
- dependency-name: redis
dependency-type: direct:development
update-type: version-update:semver-patch
dependency-group: requirements
- dependency-name: pymongo
dependency-type: direct:development
update-type: version-update:semver-minor
dependency-group: requirements
...
Signed-off-by: dependabot[bot] <support@github.com>
Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com>
* Bump the actions group with 2 updates (#2087)
Bumps the actions group with 2 updates: [actions/setup-python](https://github.com/actions/setup-python) and [pypa/gh-action-pypi-publish](https://github.com/pypa/gh-action-pypi-publish).
Updates `actions/setup-python` from 5.1.0 to 5.1.1
- [Release notes](https://github.com/actions/setup-python/releases)
- [Commits](https://github.com/actions/setup-python/compare/v5.1.0...v5.1.1)
Updates `pypa/gh-action-pypi-publish` from 1.8.14 to 1.9.0
- [Release notes](https://github.com/pypa/gh-action-pypi-publish/releases)
- [Commits](https://github.com/pypa/gh-action-pypi-publish/compare/v1.8.14...v1.9.0)
---
updated-dependencies:
- dependency-name: actions/setup-python
dependency-type: direct:production
update-type: version-update:semver-patch
dependency-group: actions
- dependency-name: pypa/gh-action-pypi-publish
dependency-type: direct:production
update-type: version-update:semver-minor
dependency-group: actions
...
Signed-off-by: dependabot[bot] <support@github.com>
Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com>
* [v2] Drop support for Python 3.9 (#2074)
* Drop support for Python 3.9
* Ignore B905 ruff rule
* Fix release notes
* Fix Array.__array__ for numpy 2.1 (#2106)
* Fix Array.__array__ for numpy 2.1
* Add changelog
* Depend on np.array for array coercions
* Bump test version of numcodecs (#2114)
* Bump test version of numcodecs
* Fix test for numcodecs 0.13
* fix: numpy 1.24 compat for Array.__array__ (#2123)
* Deprecate N5Store (#2103)
* deprecate(n5): add deprecation warning to N5Store
* also deprecate N5FSStore
* docs
* fix doc
* Run tests on numpy 1.23 (#2124)
* Bump the requirements group across 1 directory with 3 updates (#2129)
Bumps the requirements group with 3 updates in the / directory: [numpy](https://github.com/numpy/numpy), [ipywidgets](https://github.com/jupyter-widgets/ipywidgets) and [azure-storage-blob](https://github.com/Azure/azure-sdk-for-python).
Updates `numpy` from 2.0.1 to 2.1.0
- [Release notes](https://github.com/numpy/numpy/releases)
- [Changelog](https://github.com/numpy/numpy/blob/main/doc/RELEASE_WALKTHROUGH.rst)
- [Commits](https://github.com/numpy/numpy/compare/v2.0.1...v2.1.0)
Updates `ipywidgets` from 8.1.3 to 8.1.5
- [Release notes](https://github.com/jupyter-widgets/ipywidgets/releases)
- [Commits](https://github.com/jupyter-widgets/ipywidgets/compare/8.1.3...8.1.5)
Updates `azure-storage-blob` from 12.16.0 to 12.21.0
- [Release notes](https://github.com/Azure/azure-sdk-for-python/releases)
- [Changelog](https://github.com/Azure/azure-sdk-for-python/blob/main/doc/esrp_release.md)
- [Commits](https://github.com/Azure/azure-sdk-for-python/compare/azure-storage-blob_12.16.0...azure-storage-blob_12.21.0)
---
updated-dependencies:
- dependency-name: numpy
dependency-type: direct:development
update-type: version-update:semver-minor
dependency-group: requirements
- dependency-name: ipywidgets
dependency-type: direct:development
update-type: version-update:semver-patch
dependency-group: requirements
- dependency-name: azure-storage-blob
dependency-type: direct:development
update-type: version-update:semver-minor
dependency-group: requirements
...
Signed-off-by: dependabot[bot] <support@github.com>
Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com>
* chore: bump minimum numpy version to 1.24 (#2127)
* chore: bump minimum version to 1.24
* Update .github/workflows/python-package.yml
* Remove un-needed package installs in CI (#2095)
* Bump the actions group with 2 updates (#2146)
Bumps the actions group with 2 updates: [actions/setup-python](https://github.com/actions/setup-python) and [pypa/gh-action-pypi-publish](https://github.com/pypa/gh-action-pypi-publish).
Updates `actions/setup-python` from 5.1.1 to 5.2.0
- [Release notes](https://github.com/actions/setup-python/releases)
- [Commits](https://github.com/actions/setup-python/compare/v5.1.1...v5.2.0)
Updates `pypa/gh-action-pypi-publish` from 1.9.0 to 1.10.0
- [Release notes](https://github.com/pypa/gh-action-pypi-publish/releases)
- [Commits](https://github.com/pypa/gh-action-pypi-publish/compare/v1.9.0...v1.10.0)
---
updated-dependencies:
- dependency-name: actions/setup-python
dependency-type: direct:production
update-type: version-update:semver-minor
dependency-group: actions
- dependency-name: pypa/gh-action-pypi-publish
dependency-type: direct:production
update-type: version-update:semver-minor
dependency-group: actions
...
Signed-off-by: dependabot[bot] <support@github.com>
Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com>
* Bump numpy from 2.1.0 to 2.1.1 in the requirements group (#2151)
Bumps the requirements group with 1 update: [numpy](https://github.com/numpy/numpy).
Updates `numpy` from 2.1.0 to 2.1.1
- [Release notes](https://github.com/numpy/numpy/releases)
- [Changelog](https://github.com/numpy/numpy/blob/main/doc/RELEASE_WALKTHROUGH.rst)
- [Commits](https://github.com/numpy/numpy/compare/v2.1.0...v2.1.1)
---
updated-dependencies:
- dependency-name: numpy
dependency-type: direct:development
update-type: version-update:semver-patch
dependency-group: requirements
...
Signed-off-by: dependabot[bot] <support@github.com>
Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com>
* chore(docs): update release notes ahead of 2.18.4 (#2152)
* Bump pypa/gh-action-pypi-publish from 1.10.0 to 1.10.1 in the actions group (#2161)
Bumps the actions group with 1 update: [pypa/gh-action-pypi-publish](https://github.com/pypa/gh-action-pypi-publish).
Updates `pypa/gh-action-pypi-publish` from 1.10.0 to 1.10.1
- [Release notes](https://github.com/pypa/gh-action-pypi-publish/releases)
- [Commits](https://github.com/pypa/gh-action-pypi-publish/compare/v1.10.0...v1.10.1)
---
updated-dependencies:
- dependency-name: pypa/gh-action-pypi-publish
dependency-type: direct:production
update-type: version-update:semver-patch
dependency-group: actions
...
Signed-off-by: dependabot[bot] <support@github.com>
Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com>
* [docs] remove primary sidebar from tutorial (#2142)
* remove primary sidebar from tutorial
* lint
* Bump pytest from 8.3.2 to 8.3.3 in the requirements group (#2172)
Bumps the requirements group with 1 update: [pytest](https://github.com/pytest-dev/pytest).
Updates `pytest` from 8.3.2 to 8.3.3
- [Release notes](https://github.com/pytest-dev/pytest/releases)
- [Changelog](https://github.com/pytest-dev/pytest/blob/main/CHANGELOG.rst)
- [Commits](https://github.com/pytest-dev/pytest/compare/8.3.2...8.3.3)
---
updated-dependencies:
- dependency-name: pytest
dependency-type: direct:development
update-type: version-update:semver-patch
dependency-group: requirements
...
Signed-off-by: dependabot[bot] <support@github.com>
Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com>
* Bump pypa/gh-action-pypi-publish in the actions group (#2220)
Bumps the actions group with 1 update: [pypa/gh-action-pypi-publish](https://github.com/pypa/gh-action-pypi-publish).
Updates `pypa/gh-action-pypi-publish` from 1.10.1 to 1.10.2
- [Release notes](https://github.com/pypa/gh-action-pypi-publish/releases)
- [Commits](https://github.com/pypa/gh-action-pypi-publish/compare/v1.10.1...v1.10.2)
---
updated-dependencies:
- dependency-name: pypa/gh-action-pypi-publish
dependency-type: direct:production
update-type: version-update:semver-patch
dependency-group: actions
...
Signed-off-by: dependabot[bot] <support@github.com>
Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com>
* Update TEAM.md (#2227)
* Bump the requirements group across 1 directory with 3 updates (#2284)
Bumps the requirements group with 3 updates in the / directory: [redis](https://github.com/redis/redis-py), [pymongo](https://github.com/mongodb/mongo-python-driver) and [h5py](https://github.com/h5py/h5py).
Updates `redis` from 5.0.8 to 5.1.0
- [Release notes](https://github.com/redis/redis-py/releases)
- [Changelog](https://github.com/redis/redis-py/blob/master/CHANGES)
- [Commits](https://github.com/redis/redis-py/compare/v5.0.8...v5.1.0)
Updates `pymongo` from 4.8.0 to 4.10.0
- [Release notes](https://github.com/mongodb/mongo-python-driver/releases)
- [Changelog](https://github.com/mongodb/mongo-python-driver/blob/master/doc/changelog.rst)
- [Commits](https://github.com/mongodb/mongo-python-driver/compare/4.8.0...4.10.0)
Updates `h5py` from 3.11.0 to 3.12.1
- [Release notes](https://github.com/h5py/h5py/releases)
- [Changelog](https://github.com/h5py/h5py/blob/master/docs/release_guide.rst)
- [Commits](https://github.com/h5py/h5py/compare/3.11.0...3.12.1)
---
updated-dependencies:
- dependency-name: redis
dependency-type: direct:development
update-type: version-update:semver-minor
dependency-group: requirements
- dependency-name: pymongo
dependency-type: direct:development
update-type: version-update:semver-minor
dependency-group: requirements
- dependency-name: h5py
dependency-type: direct:development
update-type: version-update:semver-minor
dependency-group: requirements
...
Signed-off-by: dependabot[bot] <support@github.com>
Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com>
* Bump pymongo from 4.10.0 to 4.10.1 in the requirements group (#2288)
Bumps the requirements group with 1 update: [pymongo](https://github.com/mongodb/mongo-python-driver).
Updates `pymongo` from 4.10.0 to 4.10.1
- [Release notes](https://github.com/mongodb/mongo-python-driver/releases)
- [Changelog](https://github.com/mongodb/mongo-python-driver/blob/master/doc/changelog.rst)
- [Commits](https://github.com/mongodb/mongo-python-driver/compare/4.10.0...4.10.1)
---
updated-dependencies:
- dependency-name: pymongo
dependency-type: direct:development
update-type: version-update:semver-patch
dependency-group: requirements
...
Signed-off-by: dependabot[bot] <support@github.com>
Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com>
* Fix low contrast box titles (#2287) (#2292)
* Bump pypa/gh-action-pypi-publish in the actions group (#2304)
Bumps the actions group with 1 update: [pypa/gh-action-pypi-publish](https://github.com/pypa/gh-action-pypi-publish).
Updates `pypa/gh-action-pypi-publish` from 1.10.2 to 1.10.3
- [Release notes](https://github.com/pypa/gh-action-pypi-publish/releases)
- [Commits](https://github.com/pypa/gh-action-pypi-publish/compare/v1.10.2...v1.10.3)
---
updated-dependencies:
- dependency-name: pypa/gh-action-pypi-publish
dependency-type: direct:production
update-type: version-update:semver-patch
dependency-group: actions
...
Signed-off-by: dependabot[bot] <support@github.com>
Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com>
* Bump the requirements group with 2 updates (#2303)
Bumps the requirements group with 2 updates: [numpy](https://github.com/numpy/numpy) and [redis](https://github.com/redis/redis-py).
Updates `numpy` from 2.1.1 to 2.1.2
- [Release notes](https://github.com/numpy/numpy/releases)
- [Changelog](https://github.com/numpy/numpy/blob/main/doc/RELEASE_WALKTHROUGH.rst)
- [Commits](https://github.com/numpy/numpy/compare/v2.1.1...v2.1.2)
Updates `redis` from 5.1.0 to 5.1.1
- [Release notes](https://github.com/redis/redis-py/releases)
- [Changelog](https://github.com/redis/redis-py/blob/master/CHANGES)
- [Commits](https://github.com/redis/redis-py/compare/v5.1.0...v5.1.1)
---
updated-dependencies:
- dependency-name: numpy
dependency-type: direct:development
update-type: version-update:semver-patch
dependency-group: requirements
- dependency-name: redis
dependency-type: direct:development
update-type: version-update:semver-patch
dependency-group: requirements
...
Signed-off-by: dependabot[bot] <support@github.com>
Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com>
* Bump numcodecs from 0.13.0 to 0.13.1 in the requirements group (#2326)
Bumps the requirements group with 1 update: [numcodecs](https://github.com/zarr-developers/numcodecs).
Updates `numcodecs` from 0.13.0 to 0.13.1
- [Release notes](https://github.com/zarr-developers/numcodecs/releases)
- [Changelog](https://github.com/zarr-developers/numcodecs/blob/main/docs/release.rst)
- [Commits](https://github.com/zarr-developers/numcodecs/compare/v0.13.0...v0.13.1)
---
updated-dependencies:
- dependency-name: numcodecs
dependency-type: direct:development
update-type: version-update:semver-patch
dependency-group: requirements
...
Signed-off-by: dependabot[bot] <support@github.com>
Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com>
* remove zarr.types from v2
---------
Signed-off-by: dependabot[bot] <support@github.com>
Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com>
Co-authored-by: Janick Martinez Esturo <janick@jme.pub>
Co-authored-by: David Stansby <dstansby@gmail.com>
Co-authored-by: Dimitri Papadopoulos Orfanos <3234522+DimitriPapadopoulos@users.noreply.github.com>
Co-authored-by: Davis Bennett <davis.v.bennett@gmail.com>
Co-authored-by: Josh Moore <josh@openmicroscopy.org>
Co-authored-by: pre-commit-ci[bot] <66853113+pre-commit-ci[bot]@users.noreply.github.com>
Co-authored-by: jakirkham <jakirkham@gmail.com>
Co-authored-by: Jeff Peck <jeffrey.peck@10xgenomics.com>
Co-authored-by: Norman Rzepka <code@normanrz.com>
Co-authored-by: Sanket Verma <svsanketverma5@gmail.com>
Co-authored-by: Hood Chatham <roberthoodchatham@gmail.com>
Co-authored-by: Wei Ouyang <oeway007@gmail.com>
Co-authored-by: Daniel Jahn (dahn) <dahnjahn@gmail.com>
Co-authored-by: Deepak Cherian <dcherian@users.noreply.github.com>
Co-authored-by: Ian Carroll <carroll.ian@gmail.com>
Co-authored-by: Martin Durant <martin.durant@alumni.utoronto.ca>
Co-authored-by: Ryan Abernathey <ryan.abernathey@gmail.com>
Co-authored-by: Jonny Saunders <sneakers-the-rat@protonmail.com>
Sign up for free
to join this conversation on GitHub.
Already have an account?
Sign in to comment
Add this suggestion to a batch that can be applied as a single commit.
This suggestion is invalid because no changes were made to the code.
Suggestions cannot be applied while the pull request is closed.
Suggestions cannot be applied while viewing a subset of changes.
Only one suggestion per line can be applied in a batch.
Add this suggestion to a batch that can be applied as a single commit.
Applying suggestions on deleted lines is not supported.
You must change the existing code in this line in order to create a valid suggestion.
Outdated suggestions cannot be applied.
This suggestion has been applied or marked resolved.
Suggestions cannot be applied from pending reviews.
Suggestions cannot be applied on multi-line comments.
Suggestions cannot be applied while the pull request is queued to merge.
Suggestion cannot be applied right now. Please check back later.
Bumps conda-incubator/setup-miniconda from 2.3.0 to 3.0.1.
Release notes
Sourced from conda-incubator/setup-miniconda's releases.
... (truncated)
Changelog
Sourced from conda-incubator/setup-miniconda's changelog.
... (truncated)
Commits
11b5629Prepare 3.0.1 (#326)8706aa7Fix env activation on win (a v3 regression) due to hard-coded install PATH (#...c585a97Bump conda-incubator/setup-miniconda from 2.3.0 to 3.0.0 (#321)2defc80Prepare release (#320)0d5a56bBump actions/checkout from 2 to 4 (#319)45fd3f9Merge pull request #316 from dbast/timeoutd1e04fcMerge pull request #299 from isuruf/condaBasePathfab0073Merge pull request #318 from dbast/readmefa6bdf9Update with npm run buildd42f8b8Fix condaBasePath when useBundled is false, and there's no pre-existing condaDependabot will resolve any conflicts with this PR as long as you don't alter it yourself. You can also trigger a rebase manually by commenting
@dependabot rebase.Dependabot commands and options
You can trigger Dependabot actions by commenting on this PR:
@dependabot rebasewill rebase this PR@dependabot recreatewill recreate this PR, overwriting any edits that have been made to it@dependabot mergewill merge this PR after your CI passes on it@dependabot squash and mergewill squash and merge this PR after your CI passes on it@dependabot cancel mergewill cancel a previously requested merge and block automerging@dependabot reopenwill reopen this PR if it is closed@dependabot closewill close this PR and stop Dependabot recreating it. You can achieve the same result by closing it manually@dependabot show <dependency name> ignore conditionswill show all of the ignore conditions of the specified dependency@dependabot ignore this major versionwill close this PR and stop Dependabot creating any more for this major version (unless you reopen the PR or upgrade to it yourself)@dependabot ignore this minor versionwill close this PR and stop Dependabot creating any more for this minor version (unless you reopen the PR or upgrade to it yourself)@dependabot ignore this dependencywill close this PR and stop Dependabot creating any more for this dependency (unless you reopen the PR or upgrade to it yourself)