Build site.

docs/index.html

@@ -387,7 +387,7 @@ <h1 class="title toc-ignore">Proteomics and Phosphoproteomics
 <div class="tab-content">
 <div id="summary" class="tab-pane fade in active">
 <p>
-<strong>Last updated:</strong> 2024-06-16
+<strong>Last updated:</strong> 2024-06-17
 </p>
 <p>
 <strong>Checks:</strong> <span
@@ -518,15 +518,15 @@ <h1 class="title toc-ignore">Proteomics and Phosphoproteomics
 <div class="panel panel-default">
 <div class="panel-heading">
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-<a data-toggle="collapse" data-parent="#workflowr-checks" href="#strongRepositoryversionstrongahrefhttpsgithubcomzhenzuo2PPPtree9b65e6b4e6f85ef504ff24e43078b084bdedc5a3targetblank9b65e6ba">
+<a data-toggle="collapse" data-parent="#workflowr-checks" href="#strongRepositoryversionstrongahrefhttpsgithubcomzhenzuo2PPPtree0bc35cf329d2e08d5d8bf6677c61bda803f5463etargetblank0bc35cfa">
 <span class="glyphicon glyphicon-ok text-success"
 aria-hidden="true"></span> <strong>Repository version:</strong>
-<a href="https://github.com/zhenzuo2/PPP/tree/9b65e6b4e6f85ef504ff24e43078b084bdedc5a3" target="_blank">9b65e6b</a>
+<a href="https://github.com/zhenzuo2/PPP/tree/0bc35cf329d2e08d5d8bf6677c61bda803f5463e" target="_blank">0bc35cf</a>
 </a>
 </p>
 </div>
 <div
-id="strongRepositoryversionstrongahrefhttpsgithubcomzhenzuo2PPPtree9b65e6b4e6f85ef504ff24e43078b084bdedc5a3targetblank9b65e6ba"
+id="strongRepositoryversionstrongahrefhttpsgithubcomzhenzuo2PPPtree0bc35cf329d2e08d5d8bf6677c61bda803f5463etargetblank0bc35cfa"
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 <div class="panel-body">
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@@ -536,7 +536,7 @@ <h1 class="title toc-ignore">Proteomics and Phosphoproteomics
 </p>
 <p>
 The results in this page were generated with repository version
-<a href="https://github.com/zhenzuo2/PPP/tree/9b65e6b4e6f85ef504ff24e43078b084bdedc5a3" target="_blank">9b65e6b</a>.
+<a href="https://github.com/zhenzuo2/PPP/tree/0bc35cf329d2e08d5d8bf6677c61bda803f5463e" target="_blank">0bc35cf</a>.
 See the <em>Past versions</em> tab to see a history of the changes made
 to the R Markdown and HTML files.
 </p>
@@ -574,6 +574,9 @@ <h1 class="title toc-ignore">Proteomics and Phosphoproteomics
     Ignored:    output/regulon/.DS_Store
     Ignored:    temp/.DS_Store
 
+Untracked files:
+    Untracked:  data/Figure3.png
+
 </code></pre>
 <p>
 Note that any generated files, e.g. HTML, png, CSS, etc., are not
@@ -622,6 +625,40 @@ <h1 class="title toc-ignore">Proteomics and Phosphoproteomics
 Rmd
 </td>
 <td>
+<a href="https://github.com/zhenzuo2/PPP/blob/0bc35cf329d2e08d5d8bf6677c61bda803f5463e/analysis/index.Rmd" target="_blank">0bc35cf</a>
+</td>
+<td>
+Zhen Zuo
+</td>
+<td>
+2024-06-17
+</td>
+<td>
+Publish files
+</td>
+</tr>
+<tr>
+<td>
+html
+</td>
+<td>
+<a href="https://rawcdn.githack.com/zhenzuo2/PPP/74ab098487a33fd73f8e9ab29c277f4bb4a857f5/docs/index.html" target="_blank">74ab098</a>
+</td>
+<td>
+Zhen Zuo
+</td>
+<td>
+2024-06-16
+</td>
+<td>
+Build site.
+</td>
+</tr>
+<tr>
+<td>
+Rmd
+</td>
+<td>
 <a href="https://github.com/zhenzuo2/PPP/blob/9b65e6b4e6f85ef504ff24e43078b084bdedc5a3/analysis/index.Rmd" target="_blank">9b65e6b</a>
 </td>
 <td>
@@ -1744,8 +1781,9 @@ <h2><span class="header-section-number">2.2</span> Differential
 class="section level2" number="2.3">
 <h2><span class="header-section-number">2.3</span> Master Regulator
 Inference Algorithm (MARINa)</h2>
-<p><em>MARINa, a method to infer the activity of a given protein based
-on the differential expression/phosphorylation of the targets it
+<p><img src="figure/index.Rmd/unnamed-chunk-2-1.png" width="100%" height="100%" style="display: block; margin: auto;" />
+<em>MARINa, a method to infer the activity of a given protein based on
+the differential expression/phosphorylation of the targets it
 regulates.</em></p>
 <div id="input" class="section level3" number="2.3.1">
 <h3><span class="header-section-number">2.3.1</span> Input</h3>