From f3b97ffea78c355a68ff96adaea34ac71d23fe38 Mon Sep 17 00:00:00 2001 From: Fabian Zills <46721498+PythonFZ@users.noreply.github.com> Date: Thu, 6 Oct 2022 17:27:06 +0200 Subject: [PATCH] Undo call cargs change (#402) * reverse change in load vs getitem * bump znjson to "^0.2.1" * add unit test for write_graph --- poetry.lock | 793 +++++++++++------------- pyproject.toml | 2 +- tests/unit_tests/core/test_core_base.py | 28 + zntrack/__init__.py | 2 +- zntrack/core/base.py | 2 +- zntrack/utils/serializer.py | 12 +- zntrack/zn/dependencies.py | 8 +- 7 files changed, 406 insertions(+), 441 deletions(-) diff --git a/poetry.lock b/poetry.lock index 7c53b795..01873cbc 100644 --- a/poetry.lock +++ b/poetry.lock @@ -1,6 +1,6 @@ [[package]] name = "aiohttp" -version = "3.8.1" +version = "3.8.3" description = "Async http client/server framework (asyncio)" category = "main" optional = false @@ -346,7 +346,7 @@ zstd = ["zstandard"] [[package]] name = "certifi" -version = "2022.9.14" +version = "2022.9.24" description = "Python package for providing Mozilla's CA Bundle." category = "main" optional = false @@ -481,7 +481,7 @@ test-no-codebase = ["Pillow", "matplotlib", "pytest"] [[package]] name = "coverage" -version = "6.4.4" +version = "6.5.0" description = "Code coverage measurement for Python" category = "dev" optional = false @@ -622,7 +622,7 @@ pgp = ["gpg"] [[package]] name = "dvc" -version = "2.27.2" +version = "2.29.0" description = "Git for data scientists - manage your code and data together" category = "main" optional = false @@ -634,10 +634,10 @@ colorama = ">=0.3.9" configobj = ">=5.0.6" distro = ">=1.3.0" dpath = ">=2.0.2,<3" -dvc-data = "0.10.0" -dvc-http = "2.19.1" +dvc-data = "0.14.0" +dvc-http = "2.27.2" dvc-render = "0.0.11" -dvc-task = "0.1.2" +dvc-task = "0.1.3" dvclive = ">=0.10.0" flatten-dict = ">=0.4.1,<1" "flufl.lock" = ">=5" @@ -669,7 +669,7 @@ voluptuous = ">=0.11.7" [package.extras] all = ["dvc-azure (==2.20.4)", "dvc-gdrive (==2.19.0)", "dvc-gs (==2.19.1)", "dvc-hdfs (==2.19.0)", "dvc-oss (==2.19.0)", "dvc-s3 (==2.20.1)", "dvc-ssh (==2.19.0)", "dvc-webdav (==2.19.0)", "dvc-webhdfs (==2.19.0)"] azure = ["dvc-azure (==2.20.4)"] -dev = ["astroid (==2.12.9)", "beautifulsoup4 (==4.11.1)", "dvc-azure (==2.20.4)", "dvc-data[cli]", "dvc-gdrive (==2.19.0)", "dvc-gs (==2.19.1)", "dvc-hdfs (==2.19.0)", "dvc-oss (==2.19.0)", "dvc-s3 (==2.20.1)", "dvc-ssh (==2.19.0)", "dvc-webdav (==2.19.0)", "dvc-webhdfs (==2.19.0)", "dvclive[image] (>=0.7.3)", "filelock (==3.8.0)", "flaky (==3.7.0)", "mypy (==0.971)", "pylint (==2.15.2)", "pylint-plugin-utils (==0.7)", "pylint-pytest (==1.1.2)", "pytest (==7.1.3)", "pytest-cov (==3.0.0)", "pytest-docker (==0.11.0)", "pytest-lazy-fixture (==0.6.3)", "pytest-mock (==3.8.2)", "pytest-test-utils (==0.0.8)", "pytest-timeout (==2.1.0)", "pytest-xdist (==2.5.0)", "pywin32 (>=225)", "tpi[ssh] (>=2.1.0)", "types-requests (>=2.27.15)", "types-tabulate (>=0.8.6)", "types-toml (>=0.10.4)"] +dev = ["astroid (==2.12.9)", "beautifulsoup4 (==4.11.1)", "dvc-azure (==2.20.4)", "dvc-data[cli]", "dvc-gdrive (==2.19.0)", "dvc-gs (==2.19.1)", "dvc-hdfs (==2.19.0)", "dvc-oss (==2.19.0)", "dvc-s3 (==2.20.1)", "dvc-ssh (==2.19.0)", "dvc-webdav (==2.19.0)", "dvc-webhdfs (==2.19.0)", "dvclive[image] (>=0.7.3)", "filelock (==3.8.0)", "flaky (==3.7.0)", "mypy (==0.982)", "pylint (==2.15.2)", "pylint-plugin-utils (==0.7)", "pylint-pytest (==1.1.2)", "pytest (==7.1.3)", "pytest-cov (==4.0.0)", "pytest-docker (==0.11.0)", "pytest-lazy-fixture (==0.6.3)", "pytest-mock (==3.9.0)", "pytest-test-utils (==0.0.8)", "pytest-timeout (==2.1.0)", "pytest-xdist (==2.5.0)", "pywin32 (>=225)", "tpi[ssh] (>=2.1.0)", "types-requests (>=2.27.15)", "types-tabulate (>=0.8.6)", "types-toml (>=0.10.4)"] gdrive = ["dvc-gdrive (==2.19.0)"] gs = ["dvc-gs (==2.19.1)"] hdfs = ["dvc-hdfs (==2.19.0)"] @@ -679,14 +679,14 @@ ssh = ["dvc-ssh (==2.19.0)"] ssh_gssapi = ["dvc-ssh[gssapi] (==2.19.0)"] terraform = ["tpi[ssh] (>=2.1.0)"] testing = ["pytest-test-utils (==0.0.8)"] -tests = ["astroid (==2.12.9)", "beautifulsoup4 (==4.11.1)", "dvc-ssh (==2.19.0)", "dvclive[image] (>=0.7.3)", "filelock (==3.8.0)", "flaky (==3.7.0)", "mypy (==0.971)", "pylint (==2.15.2)", "pylint-plugin-utils (==0.7)", "pylint-pytest (==1.1.2)", "pytest (==7.1.3)", "pytest-cov (==3.0.0)", "pytest-docker (==0.11.0)", "pytest-lazy-fixture (==0.6.3)", "pytest-mock (==3.8.2)", "pytest-test-utils (==0.0.8)", "pytest-timeout (==2.1.0)", "pytest-xdist (==2.5.0)", "pywin32 (>=225)", "tpi[ssh] (>=2.1.0)", "types-requests (>=2.27.15)", "types-tabulate (>=0.8.6)", "types-toml (>=0.10.4)"] +tests = ["astroid (==2.12.9)", "beautifulsoup4 (==4.11.1)", "dvc-ssh (==2.19.0)", "dvclive[image] (>=0.7.3)", "filelock (==3.8.0)", "flaky (==3.7.0)", "mypy (==0.982)", "pylint (==2.15.2)", "pylint-plugin-utils (==0.7)", "pylint-pytest (==1.1.2)", "pytest (==7.1.3)", "pytest-cov (==4.0.0)", "pytest-docker (==0.11.0)", "pytest-lazy-fixture (==0.6.3)", "pytest-mock (==3.9.0)", "pytest-test-utils (==0.0.8)", "pytest-timeout (==2.1.0)", "pytest-xdist (==2.5.0)", "pywin32 (>=225)", "tpi[ssh] (>=2.1.0)", "types-requests (>=2.27.15)", "types-tabulate (>=0.8.6)", "types-toml (>=0.10.4)"] webdav = ["dvc-webdav (==2.19.0)"] webhdfs = ["dvc-webhdfs (==2.19.0)"] webhdfs_kerberos = ["dvc-webhdfs[kerberos] (==2.19.0)"] [[package]] name = "dvc-data" -version = "0.10.0" +version = "0.14.0" description = "dvc data" category = "main" optional = false @@ -696,7 +696,7 @@ python-versions = ">=3.8" attrs = ">=21.3.0" dictdiffer = ">=0.8.1" diskcache = ">=5.2.1" -dvc-objects = "0.4.0" +dvc-objects = "0.5.0" funcy = ">=1.14" nanotime = ">=0.5.2" pygtrie = ">=2.3.2" @@ -710,7 +710,7 @@ tests = ["mypy (==0.971)", "pylint (==2.15.0)", "pytest (==7.1.2)", "pytest-benc [[package]] name = "dvc-http" -version = "2.19.1" +version = "2.27.2" description = "http plugin for dvc" category = "main" optional = false @@ -722,11 +722,11 @@ dvc = "*" fsspec = {version = "*", extras = ["http"]} [package.extras] -tests = ["Pygments (==2.10.0)", "collective.checkdocs (==0.2)", "crc32c (==2.2.post0)", "dvc", "filelock (==3.3.2)", "flaky (==3.7.0)", "mock (==4.0.3)", "mypy (==0.910)", "pydocstyle (==6.1.1)", "pylint (==2.11.1)", "pylint-plugin-utils (==0.6)", "pylint-pytest (==1.1.2)", "pytest (==6.2.5)", "pytest-cov (==3.0.0)", "pytest-docker (==0.10.3)", "pytest-lazy-fixture (==0.6.3)", "pytest-mock (==3.6.1)", "pytest-xdist (==2.4.0)", "pywin32 (>=225)", "rangehttpserver (==1.2.0)", "types-requests (==2.25.11)", "types-tabulate (==0.8.3)", "types-toml (==0.10.1)", "wget (==3.2)", "wheel (==0.37.0)", "wsgidav (==3.1.1)", "xmltodict (==0.12.0)"] +tests = ["Pygments (==2.10.0)", "collective.checkdocs (==0.2)", "crc32c (==2.2.post0)", "dvc[testing]", "filelock (==3.3.2)", "flaky (==3.7.0)", "mock (==4.0.3)", "mypy (==0.910)", "pydocstyle (==6.1.1)", "pylint (==2.11.1)", "pylint-plugin-utils (==0.6)", "pylint-pytest (==1.1.2)", "pytest (==6.2.5)", "pytest-cov (==3.0.0)", "pytest-docker (==0.10.3)", "pytest-lazy-fixture (==0.6.3)", "pytest-mock (==3.6.1)", "pytest-xdist (==2.4.0)", "pywin32 (>=225)", "rangehttpserver (==1.2.0)", "types-requests (==2.25.11)", "types-tabulate (==0.8.3)", "types-toml (==0.10.1)", "wget (==3.2)", "wheel (==0.37.0)", "wsgidav (==3.1.1)", "xmltodict (==0.12.0)"] [[package]] name = "dvc-objects" -version = "0.4.0" +version = "0.5.0" description = "dvc objects" category = "main" optional = false @@ -763,7 +763,7 @@ tests = ["funcy (>=1.17)", "matplotlib", "mypy (==0.971)", "pylint (==2.14.5)", [[package]] name = "dvc-task" -version = "0.1.2" +version = "0.1.3" description = "Extensible task queue used in DVC." category = "main" optional = false @@ -777,13 +777,13 @@ pywin32 = {version = ">=225", markers = "sys_platform == \"win32\""} shortuuid = ">=1.0.8" [package.extras] -dev = ["celery-types (>=0.11.0)", "flaky (==3.7.0)", "mkdocs (==1.3.0)", "mkdocs-gen-files (==0.3.4)", "mkdocs-material (==8.3.7)", "mkdocs-section-index (==0.3.4)", "mkdocstrings-python (==0.7.1)", "mypy (==0.961)", "pylint (==2.14.3)", "pytest (==7.1.2)", "pytest-celery", "pytest-cov (==3.0.0)", "pytest-mock (==3.7.0)", "pytest-sugar (==0.9.4)", "pytest-test-utils (>=0.0.6)"] -docs = ["mkdocs (==1.3.0)", "mkdocs-gen-files (==0.3.4)", "mkdocs-material (==8.3.7)", "mkdocs-section-index (==0.3.4)", "mkdocstrings-python (==0.7.1)"] -tests = ["celery-types (>=0.11.0)", "flaky (==3.7.0)", "mypy (==0.961)", "pylint (==2.14.3)", "pytest (==7.1.2)", "pytest-celery", "pytest-cov (==3.0.0)", "pytest-mock (==3.7.0)", "pytest-sugar (==0.9.4)", "pytest-test-utils (>=0.0.6)"] +dev = ["celery-types (>=0.11.0)", "flaky (==3.7.0)", "mkdocs (==1.3.1)", "mkdocs-gen-files (==0.3.5)", "mkdocs-material (==8.4.1)", "mkdocs-section-index (==0.3.4)", "mkdocstrings-python (==0.7.1)", "mypy (==0.971)", "pylint (==2.14.5)", "pytest (==7.1.2)", "pytest-celery", "pytest-cov (==3.0.0)", "pytest-mock (==3.8.2)", "pytest-sugar (==0.9.5)", "pytest-test-utils (>=0.0.6)"] +docs = ["mkdocs (==1.3.1)", "mkdocs-gen-files (==0.3.5)", "mkdocs-material (==8.4.1)", "mkdocs-section-index (==0.3.4)", "mkdocstrings-python (==0.7.1)"] +tests = ["celery-types (>=0.11.0)", "flaky (==3.7.0)", "mypy (==0.971)", "pylint (==2.14.5)", "pytest (==7.1.2)", "pytest-celery", "pytest-cov (==3.0.0)", "pytest-mock (==3.8.2)", "pytest-sugar (==0.9.5)", "pytest-test-utils (>=0.0.6)"] [[package]] name = "dvclive" -version = "0.10.0" +version = "0.11.0" description = "Metric logger for ML projects." category = "main" optional = false @@ -791,19 +791,21 @@ python-versions = ">=3.8" [package.dependencies] dvc-render = {version = ">=0.0.8", extras = ["table"]} +"ruamel.yaml" = ">=0.17.11" [package.extras] -all = ["catalyst (<=21.12)", "datasets", "dvc-render[table] (>=0.0.8)", "fastai", "lightgbm", "mmcv", "pillow", "pytorch-lightning (>=1.6)", "scikit-learn", "tensorflow", "transformers", "xgboost"] +all = ["catalyst (<=21.12)", "datasets", "fastai", "lightgbm", "mmcv", "pillow", "pytorch-lightning (>=1.7)", "scikit-learn", "tensorflow", "transformers", "xgboost"] catalyst = ["catalyst (<=21.12)"] +dev = ["catalyst (<=21.12)", "datasets", "dvc (>=2.0.0)", "fastai", "funcy (>=1.1)", "lightgbm", "mmcv", "mypy (==0.971)", "pandas (>=1.3.1)", "pillow", "pylint (==2.15.0)", "pylint-plugin-utils (>=0.6)", "pytest (==7.1.2)", "pytest-cov (==3.0.0)", "pytest-mock (==3.8.2)", "pytest-sugar (==0.9.5)", "pytorch-lightning (>=1.7)", "scikit-learn", "tensorflow", "transformers", "xgboost"] fastai = ["fastai"] huggingface = ["datasets", "transformers"] image = ["pillow"] lgbm = ["lightgbm"] mmcv = ["mmcv"] plots = ["scikit-learn"] -pytorch_lightning = ["pytorch-lightning (>=1.6)"] +pytorch_lightning = ["pytorch-lightning (>=1.7)"] sklearn = ["scikit-learn"] -tests = ["catalyst (<=21.12)", "datasets", "dvc (>=2.0.0)", "dvc-render[table] (>=0.0.8)", "fastai", "funcy (>=1.14)", "lightgbm", "mmcv", "pandas (>=1.3.1)", "pillow", "pre-commit", "pylint (==2.5.3)", "pylint-plugin-utils (>=0.6)", "pytest (>=6.0.1)", "pytest-cov (>=2.12.1)", "pytest-mock (>=3.6.1)", "pytorch-lightning (>=1.6)", "scikit-learn", "tensorflow", "transformers", "xgboost"] +tests = ["catalyst (<=21.12)", "datasets", "dvc (>=2.0.0)", "fastai", "funcy (>=1.1)", "lightgbm", "mmcv", "mypy (==0.971)", "pandas (>=1.3.1)", "pillow", "pylint (==2.15.0)", "pylint-plugin-utils (>=0.6)", "pytest (==7.1.2)", "pytest-cov (==3.0.0)", "pytest-mock (==3.8.2)", "pytest-sugar (==0.9.5)", "pytorch-lightning (>=1.7)", "scikit-learn", "tensorflow", "transformers", "xgboost"] tf = ["tensorflow"] xgb = ["xgboost"] @@ -828,15 +830,18 @@ testing = ["pre-commit"] [[package]] name = "executing" -version = "1.0.0" +version = "1.1.0" description = "Get the currently executing AST node of a frame, and other information" category = "dev" optional = false python-versions = "*" +[package.extras] +tests = ["asttokens", "littleutils", "pytest", "rich"] + [[package]] name = "fastjsonschema" -version = "2.16.1" +version = "2.16.2" description = "Fastest Python implementation of JSON schema" category = "dev" optional = false @@ -895,7 +900,7 @@ psutil = ">=5.9.0" [[package]] name = "fonttools" -version = "4.37.2" +version = "4.37.4" description = "Tools to manipulate font files" category = "dev" optional = false @@ -1027,7 +1032,7 @@ packaging = "*" [[package]] name = "identify" -version = "2.5.5" +version = "2.5.6" description = "File identification library for Python" category = "dev" optional = false @@ -1054,7 +1059,7 @@ python-versions = ">=2.7, !=3.0.*, !=3.1.*, !=3.2.*, !=3.3.*" [[package]] name = "importlib-metadata" -version = "4.12.0" +version = "5.0.0" description = "Read metadata from Python packages" category = "dev" optional = false @@ -1064,9 +1069,9 @@ python-versions = ">=3.7" zipp = ">=0.5" [package.extras] -docs = ["jaraco.packaging (>=9)", "rst.linker (>=1.9)", "sphinx"] +docs = ["furo", "jaraco.packaging (>=9)", "jaraco.tidelift (>=1.4)", "rst.linker (>=1.9)", "sphinx (>=3.5)"] perf = ["ipython"] -testing = ["flufl.flake8", "importlib-resources (>=1.3)", "packaging", "pyfakefs", "pytest (>=6)", "pytest-black (>=0.3.7)", "pytest-checkdocs (>=2.4)", "pytest-cov", "pytest-enabler (>=1.3)", "pytest-flake8", "pytest-mypy (>=0.9.1)", "pytest-perf (>=0.9.2)"] +testing = ["flake8 (<5)", "flufl.flake8", "importlib-resources (>=1.3)", "packaging", "pyfakefs", "pytest (>=6)", "pytest-black (>=0.3.7)", "pytest-checkdocs (>=2.4)", "pytest-cov", "pytest-enabler (>=1.3)", "pytest-flake8", "pytest-mypy (>=0.9.1)", "pytest-perf (>=0.9.2)"] [[package]] name = "importlib-resources" @@ -1093,7 +1098,7 @@ python-versions = "*" [[package]] name = "ipykernel" -version = "6.15.3" +version = "6.16.0" description = "IPython Kernel for Jupyter" category = "dev" optional = false @@ -1287,7 +1292,7 @@ test = ["ipykernel", "pre-commit", "pytest", "pytest-cov", "pytest-timeout"] [[package]] name = "jupyter-server" -version = "1.18.1" +version = "1.19.1" description = "The backend—i.e. core services, APIs, and REST endpoints—to Jupyter web applications." category = "dev" optional = false @@ -1316,7 +1321,7 @@ test = ["coverage", "ipykernel", "pre-commit", "pytest (>=6.0)", "pytest-console [[package]] name = "jupyterlab" -version = "3.4.7" +version = "3.4.8" description = "JupyterLab computational environment" category = "dev" optional = false @@ -1348,7 +1353,7 @@ python-versions = ">=3.7" [[package]] name = "jupyterlab-server" -version = "2.15.1" +version = "2.15.2" description = "A set of server components for JupyterLab and JupyterLab like applications." category = "dev" optional = false @@ -1366,7 +1371,7 @@ requests = "*" [package.extras] openapi = ["openapi-core (>=0.14.2)", "ruamel-yaml"] -test = ["codecov", "ipykernel", "jupyter-server[test]", "openapi-core (>=0.14.2)", "openapi-spec-validator (<0.5)", "pytest (>=5.3.2)", "pytest-console-scripts", "pytest-cov", "ruamel-yaml", "strict-rfc3339"] +test = ["codecov", "ipykernel", "jupyter-server[test]", "openapi-core (>=0.14.2,<0.15.0)", "openapi-spec-validator (<0.5)", "pytest (>=5.3.2)", "pytest-console-scripts", "pytest-cov", "ruamel-yaml", "strict-rfc3339"] [[package]] name = "kiwisolver" @@ -1404,20 +1409,6 @@ sqs = ["boto3 (>=1.9.12)", "pycurl (>=7.44.1,<7.45.0)", "urllib3 (>=1.26.7)"] yaml = ["PyYAML (>=3.10)"] zookeeper = ["kazoo (>=1.3.1)"] -[[package]] -name = "lxml" -version = "4.9.1" -description = "Powerful and Pythonic XML processing library combining libxml2/libxslt with the ElementTree API." -category = "dev" -optional = false -python-versions = ">=2.7, !=3.0.*, !=3.1.*, !=3.2.*, !=3.3.*, != 3.4.*" - -[package.extras] -cssselect = ["cssselect (>=0.7)"] -html5 = ["html5lib"] -htmlsoup = ["BeautifulSoup4"] -source = ["Cython (>=0.29.7)"] - [[package]] name = "MarkupSafe" version = "2.1.1" @@ -1499,7 +1490,7 @@ python-versions = "*" [[package]] name = "nbclassic" -version = "0.4.3" +version = "0.4.4" description = "A web-based notebook environment for interactive computing" category = "dev" optional = false @@ -1549,7 +1540,7 @@ test = ["black", "check-manifest", "flake8", "ipykernel", "ipython", "ipywidgets [[package]] name = "nbconvert" -version = "7.0.0" +version = "7.1.0" description = "Converting Jupyter Notebooks" category = "dev" optional = false @@ -1563,7 +1554,6 @@ importlib-metadata = {version = ">=3.6", markers = "python_version < \"3.10\""} jinja2 = ">=3.0" jupyter-core = ">=4.7" jupyterlab-pygments = "*" -lxml = "*" markupsafe = ">=2.0" mistune = ">=2.0.3,<3" nbclient = ">=0.5.0" @@ -1585,7 +1575,7 @@ webpdf = ["pyppeteer (>=1,<1.1)"] [[package]] name = "nbformat" -version = "5.5.0" +version = "5.6.1" description = "The Jupyter Notebook format" category = "dev" optional = false @@ -1594,7 +1584,7 @@ python-versions = ">=3.7" [package.dependencies] fastjsonschema = "*" jsonschema = ">=2.6" -jupyter_core = "*" +jupyter-core = "*" traitlets = ">=5.1" [package.extras] @@ -1646,7 +1636,7 @@ sphinx = ">=1.8" [[package]] name = "nest-asyncio" -version = "1.5.5" +version = "1.5.6" description = "Patch asyncio to allow nested event loops" category = "dev" optional = false @@ -1654,7 +1644,7 @@ python-versions = ">=3.5" [[package]] name = "networkx" -version = "2.8.6" +version = "2.8.7" description = "Python package for creating and manipulating graphs and networks" category = "main" optional = false @@ -1662,7 +1652,7 @@ python-versions = ">=3.8" [package.extras] default = ["matplotlib (>=3.4)", "numpy (>=1.19)", "pandas (>=1.3)", "scipy (>=1.8)"] -developer = ["mypy (>=0.961)", "pre-commit (>=2.20)"] +developer = ["mypy (>=0.981)", "pre-commit (>=2.20)"] doc = ["nb2plots (>=0.6)", "numpydoc (>=1.4)", "pillow (>=9.1)", "pydata-sphinx-theme (>=0.9)", "sphinx (>=5)", "sphinx-gallery (>=0.10)", "texext (>=0.6.6)"] extra = ["lxml (>=4.6)", "pydot (>=1.4.2)", "pygraphviz (>=1.9)", "sympy (>=1.10)"] test = ["codecov (>=2.1)", "pytest (>=7.1)", "pytest-cov (>=3.0)"] @@ -1770,7 +1760,7 @@ pyparsing = 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bd445300..90882eac 100644 --- a/tests/unit_tests/core/test_core_base.py +++ b/tests/unit_tests/core/test_core_base.py @@ -304,3 +304,31 @@ def test_matmul_not_supported(): RunTestNode() @ "outs" assert mock.call_count == 3 + + +def test_write_graph(): + example = ExampleDVCOutsNode() + + with patch.object(ExampleDVCOutsNode, "save") as save_mock, patch.object( + ExampleDVCOutsNode, "_handle_nodes_as_methods" + ) as handle_znnodes_mock: + # Patch the methods that write to disk + script = example.write_graph(dry_run=True) + + assert save_mock.called + assert handle_znnodes_mock.called + + assert script == [ + "dvc", + "stage", + "add", + "-n", + "ExampleDVCOutsNode", + "--force", + "--outs", + "example.dat", + ( + 'python3 -c "from test_core_base import ExampleDVCOutsNode; ' + "ExampleDVCOutsNode.load(name='ExampleDVCOutsNode').run_and_save()\" " + ), + ] diff --git a/zntrack/__init__.py b/zntrack/__init__.py index a712c392..afa18b45 100644 --- a/zntrack/__init__.py +++ b/zntrack/__init__.py @@ -23,7 +23,7 @@ from zntrack.zn.dependencies import getdeps # register converters -znjson.register([ZnTrackTypeConverter, MethodConverter, NodeAttributeConverter]) +znjson.config.register([ZnTrackTypeConverter, MethodConverter, NodeAttributeConverter]) __all__ = [ Node.__name__, diff --git a/zntrack/core/base.py b/zntrack/core/base.py index db681511..134a20a2 100644 --- a/zntrack/core/base.py +++ b/zntrack/core/base.py @@ -564,7 +564,7 @@ def write_graph( custom_args += pair if call_args is None: - call_args = f"['{self.node_name}'].run_and_save()" + call_args = f".load(name='{self.node_name}').run_and_save()" script = prepare_dvc_script( node_name=self.node_name, diff --git a/zntrack/utils/serializer.py b/zntrack/utils/serializer.py index 998e104b..642c2178 100644 --- a/zntrack/utils/serializer.py +++ b/zntrack/utils/serializer.py @@ -67,7 +67,7 @@ class ZnTrackTypeConverter(znjson.ConverterBase): representation = "ZnTrackType" level = 10 - def _encode(self, obj: Node) -> dict: + def encode(self, obj: Node) -> dict: """Convert Node to serializable dict""" return dataclasses.asdict( SerializedNode( @@ -77,7 +77,7 @@ def _encode(self, obj: Node) -> dict: ) ) - def _decode(self, value: dict) -> Node: + def decode(self, value: dict) -> Node: """return serialized Node""" serialized_node = SerializedNode(**value) @@ -94,11 +94,11 @@ class NodeAttributeConverter(znjson.ConverterBase): representation = "NodeAttribute" level = 10 - def _encode(self, obj: NodeAttribute) -> dict: + def encode(self, obj: NodeAttribute) -> dict: """Convert NodeAttribute to serializable dict""" return dataclasses.asdict(obj) - def _decode(self, value: dict): + def decode(self, value: dict): """return serialized Node attribute""" node_attribute = NodeAttribute(**value) @@ -115,7 +115,7 @@ class MethodConverter(znjson.ConverterBase): representation = "zn.method" level = 10 - def _encode(self, obj): + def encode(self, obj): """Serialize the object""" serialized_method = SerializedMethod( @@ -147,7 +147,7 @@ def _encode(self, obj): return dataclasses.asdict(serialized_method) - def _decode(self, value: dict): + def decode(self, value: dict): """Deserialize the object""" if "name" in value: diff --git a/zntrack/zn/dependencies.py b/zntrack/zn/dependencies.py index f39e3cf2..f2c49073 100644 --- a/zntrack/zn/dependencies.py +++ b/zntrack/zn/dependencies.py @@ -31,11 +31,11 @@ class RawNodeAttributeConverter(znjson.ConverterBase): representation = "NodeAttribute" level = 999 - def _encode(self, obj: NodeAttribute) -> dict: + def encode(self, obj: NodeAttribute) -> dict: """Convert NodeAttribute to serializable dict""" return dataclasses.asdict(obj) - def _decode(self, value: dict) -> NodeAttribute: + def decode(self, value: dict) -> NodeAttribute: """return serialized Node attribute""" return NodeAttribute(**value) @@ -77,11 +77,11 @@ def get_origin( ------ AttributeError: if the attribute is not of type zn.deps """ - znjson.register(RawNodeAttributeConverter) + znjson.config.register(RawNodeAttributeConverter) new_node = node.load(name=node.node_name) value = getattr(new_node, attribute) - znjson.deregister(RawNodeAttributeConverter) + znjson.config.deregister(RawNodeAttributeConverter) def not_zn_deps_err() -> AttributeError: """Evaluate error message when raising the error"""