Skip to content
New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

Sign up for GitHub

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

Jump to bottom

Dask or Numpy array as input #6

Open
sanjaynagi opened this issue Feb 10, 2023 · 1 comment
Open

Dask or Numpy array as input #6

sanjaynagi opened this issue Feb 10, 2023 · 1 comment

Comments

@sanjaynagi
Copy link

Thank you for the method, it looks great.

Would be really awesome if we could pass a dask or numpy array of haplotypes directly as input to phasedibd, rather than a VCF file. I'd be tempted to try and code this myself, but I'm not familiar with cython code which I think will make it tough.

Would be glad to hear your thoughts.
@sanjaynagi sanjaynagi mentioned this issue Mar 13, 2023
Closed
@sanjaynagi
Copy link
Author

got around to looking at this in #7 , it was super simple in the end!

Sign up for free to join this conversation on GitHub. Already have an account? Sign in to comment
Assignees
No one assigned
Labels
None yet
Projects
None yet
Milestone
No milestone
Development

Successfully merging a pull request may close this issue.

enable np.array input sanjaynagi/phasedibd
1 participant
@sanjaynagi