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setup.py
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setup.py
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from setuptools import setup, find_packages
import os
import shutil
#remove the dist folder first if exists
if os.path.exists("dist"):
shutil.rmtree("dist")
def readme():
this_directory = os.path.abspath(os.path.dirname(__file__))
with open(os.path.join(this_directory, 'README.md'), encoding='latin-1') as f:
long_description = f.read()
return(long_description)
VERSION = '0.0.1'
def write_version_py(filename='HRProfiler/version.py'):
# Copied from numpy setup.py
cnt = """
# THIS FILE IS GENERATED FROM HRProfiler SETUP.PY
short_version = '%(version)s'
version = '%(version)s'
"""
fh = open(filename, 'w')
fh.write(cnt % {'version': VERSION,})
fh.close()
write_version_py()
setup(
name="HRProfiler",
version=VERSION,
description="HRD Prediction from WGS and WES samples",
long_description=readme(),
long_description_content_type="text/markdown",
url="https://github.com/AlexandrovLab/HRProfiler.git",
author="Ammal Abbasi",
author_email="amabbasi@ucsd.edu",
license="UCSD",
packages=["HRProfiler", "HRProfiler.scripts"],
python_requires=">=3.8",
install_requires=[
"sigProfilerPlotting>=1.3.16",
"SigProfilerMatrixGenerator>=1.2.23",
"joblib>=0.16.0",
"scikit-plot==0.3.7",
"scikit-learn>=1.1.3",
"seaborn",
],
include_package_data=True,
zip_safe=False,
)