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I am trying to run makePAV.py and bumping into an issue. I suspect that my inputs are not formatted correctly. I am running python makePAV.py ExonsOnly.gff2bed.bed All.per_base.exons.bed > test.tsv. My inputs are ExonsOnly.gff2bed.bed, which looks like:
1A_a 36329 36387 . . - AUGUSTUS exon . ID=ajg16045.t1.exon1;Parent=ajg16045.t1;
1A_a 36329 36387 . . - AUGUSTUS exon . ID=ajg16045.t2.exon1;Parent=ajg16045.t2;
1A_a 36475 36570 . . - AUGUSTUS exon . ID=ajg16045.t1.exon2;Parent=ajg16045.t1;
1A_a 36475 36570 . . - AUGUSTUS exon . ID=ajg16045.t2.exon2;Parent=ajg16045.t2;
1A_a 37442 37491 . . - AUGUSTUS exon . ID=ajg16045.t2.exon3;Parent=ajg16045.t2;
Hi,
I am trying to run
makePAV.py
and bumping into an issue. I suspect that my inputs are not formatted correctly. I am runningpython makePAV.py ExonsOnly.gff2bed.bed All.per_base.exons.bed > test.tsv
. My inputs areExonsOnly.gff2bed.bed
, which looks like:and
All.per_base.exons.bed
, which looks like:Any advice is appreciated. Thank you.
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